AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0635130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0635130 MtrunA17_Chr4g0014501 94.521 73 4 0 1 73 1 73 8.64e-45 141
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 51 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAACAATTTAAGTAAATT+AGG 0.197434 4_3:-23322044 Msa0635130:five_prime_UTR
TGCTTTGGCTGCCAAGGATT+TGG 0.205335 4_3:-23320792 Msa0635130:CDS
TATCTTTCTCCTGTTTGCTC+TGG 0.298208 4_3:+23320729 None:intergenic
CAACCCTCCCTTTCCACAGC+TGG 0.299373 4_3:+23320755 None:intergenic
ATCTTTCTCCTGTTTGCTCT+GGG 0.318750 4_3:+23320730 None:intergenic
GCTTTGGCTGCCAAGGATTT+GGG 0.347571 4_3:-23320791 Msa0635130:CDS
AAAAGGATTCTCATTTAATT+CGG 0.355730 4_3:-23321797 Msa0635130:intron
GCAAAGAAATGGATAATAAG+AGG 0.358111 4_3:+23321995 None:intergenic
AACCCTCCCTTTCCACAGCT+GGG 0.382418 4_3:+23320756 None:intergenic
ATAATTCTTGTCAGTGTGAT+TGG 0.420699 4_3:+23321856 None:intergenic
TTTGATAGGATTATGAAAAT+CGG 0.423246 4_3:-23322064 Msa0635130:five_prime_UTR
CATAATCCTATCAAAGCTAA+AGG 0.438553 4_3:+23322072 None:intergenic
ATCACTACTTCTGCTTCAAA+AGG 0.440521 4_3:-23321814 Msa0635130:CDS
GTGTGTATCTTGCAAAGAAA+TGG 0.451171 4_3:+23321984 None:intergenic
ATCTCTGTTTGTTGCTACAA+TGG 0.457545 4_3:-23321922 Msa0635130:CDS
CATCGAATGTCCAGGATGTA+AGG 0.459912 4_3:-23321255 Msa0635130:intron
GACACACCTTTAGCTTTGAT+AGG 0.462219 4_3:-23322078 None:intergenic
GGAGCTTTATGAAGAAAAGT+TGG 0.472718 4_3:+23321886 None:intergenic
GTAAAAGTTGCGAAGGCAAA+GGG 0.485475 4_3:-23321280 Msa0635130:CDS
CAACCACTGATCACATTCAC+AGG 0.489081 4_3:-23321960 Msa0635130:five_prime_UTR
GTATGATGGTATAGATGCTT+TGG 0.489880 4_3:-23320807 Msa0635130:intron
AATAATACCACCTTACATCC+TGG 0.499547 4_3:+23321245 None:intergenic
AACTGATCAACCCAAATCCT+TGG 0.501483 4_3:+23320781 None:intergenic
GTCAGTGTGATTGGTTGAAG+TGG 0.502833 4_3:+23321865 None:intergenic
TTTACTAGAGTGAAGAATGC+GGG 0.508425 4_3:-23320678 Msa0635130:exon
AGTTGCCCCAGCTGTGGAAA+GGG 0.528411 4_3:-23320762 Msa0635130:CDS
TGCCCCAGCTGTGGAAAGGG+AGG 0.538968 4_3:-23320759 Msa0635130:CDS
TATAGATGCTTTGGCTGCCA+AGG 0.541351 4_3:-23320798 Msa0635130:intron
CAAAGAAATGGATAATAAGA+GGG 0.541654 4_3:+23321996 None:intergenic
ATAAATGACTTGGATTGCCA+TGG 0.554012 4_3:+23320569 None:intergenic
AAAGGGGCCATCGAATGTCC+AGG 0.555320 4_3:-23321263 Msa0635130:CDS
TAAACTCATAATAAATGACT+TGG 0.558961 4_3:+23320559 None:intergenic
CAGTTGCCCCAGCTGTGGAA+AGG 0.560915 4_3:-23320763 Msa0635130:CDS
AAAAGTTGTAAAAGTTGCGA+AGG 0.564737 4_3:-23321287 Msa0635130:CDS
TAGAGTGAAGAATGCGGGGA+TGG 0.575222 4_3:-23320673 Msa0635130:three_prime_UTR
GCTTTATGAAGAAAAGTTGG+TGG 0.576508 4_3:+23321889 None:intergenic
TCTTTCTCCTGTTTGCTCTG+GGG 0.576960 4_3:+23320731 None:intergenic
GGGTTGACCCCAGAGCAAAC+AGG 0.577880 4_3:-23320738 Msa0635130:CDS
CTTACATCCTGGACATTCGA+TGG 0.580457 4_3:+23321256 None:intergenic
TGTAAAAGTTGCGAAGGCAA+AGG 0.583122 4_3:-23321281 Msa0635130:CDS
TTCCCTGTGAATGTGATCAG+TGG 0.583301 4_3:+23321957 None:intergenic
ACCCTCCCTTTCCACAGCTG+GGG 0.589769 4_3:+23320757 None:intergenic
ATAAGAGGGTTTGTCACGTG+TGG 0.607980 4_3:+23322010 None:intergenic
GCCCCAGCTGTGGAAAGGGA+GGG 0.610418 4_3:-23320758 Msa0635130:CDS
TTGATCAGTTGCCCCAGCTG+TGG 0.611692 4_3:-23320768 Msa0635130:CDS
ATTGTAGCAACAAACAGAGA+TGG 0.617721 4_3:+23321924 None:intergenic
TTGTTGCTACAATGGTGCTG+TGG 0.639295 4_3:-23321914 Msa0635130:CDS
TTACTAGAGTGAAGAATGCG+GGG 0.661098 4_3:-23320677 Msa0635130:exon
GTAGCAACAAACAGAGATGG+AGG 0.667885 4_3:+23321927 None:intergenic
AACCACTGATCACATTCACA+GGG 0.683803 4_3:-23321959 Msa0635130:five_prime_UTR
TAAAAGTTGCGAAGGCAAAG+GGG 0.722942 4_3:-23321279 Msa0635130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTAATGTATAAATTGTTT+AGG + chr4_3:23321424-23321443 None:intergenic 15.0%
!!! TTATGTTTTGATAATTTACA+AGG - chr4_3:23322007-23322026 Msa0635130:five_prime_UTR 15.0%
!! TACTAATGTATAAATTGTTT+AGG + chr4_3:23321424-23321443 None:intergenic 15.0%
!!! TTATGTTTTGATAATTTACA+AGG - chr4_3:23322007-23322026 Msa0635130:five_prime_UTR 15.0%
!! TTTGATAGGATTATGAAAAT+CGG - chr4_3:23320553-23320572 Msa0635130:three_prime_UTR 20.0%
!! AAAAGGATTCTCATTTAATT+CGG - chr4_3:23320820-23320839 Msa0635130:intron 20.0%
!! TATACCTTATACAAACTATA+TGG - chr4_3:23320850-23320869 Msa0635130:intron 20.0%
!!! AAAACCATATAGTTTGTATA+AGG + chr4_3:23320857-23320876 None:intergenic 20.0%
!!! TCAGATGAAACAATTTTAAT+CGG - chr4_3:23321233-23321252 Msa0635130:intron 20.0%
!!! ATTGTTTAGGATTTAATTTG+TGG + chr4_3:23321411-23321430 None:intergenic 20.0%
!!! AGCTATGTTTTTAATTTGAA+TGG - chr4_3:23321479-23321498 Msa0635130:intron 20.0%
!! ATTTGAATGGTTGTTTAATT+TGG - chr4_3:23321492-23321511 Msa0635130:intron 20.0%
!! ATCATACTATTGTATTAGAA+AGG + chr4_3:23321797-23321816 None:intergenic 20.0%
!! TTTCTAATACAATAGTATGA+TGG - chr4_3:23321796-23321815 Msa0635130:intron 20.0%
!! AAAAAGAAAAATAGAAACCA+TGG - chr4_3:23322031-23322050 Msa0635130:five_prime_UTR 20.0%
!! TAAACTCATAATAAATGACT+TGG + chr4_3:23322061-23322080 None:intergenic 20.0%
!! TTTGATAGGATTATGAAAAT+CGG - chr4_3:23320553-23320572 Msa0635130:three_prime_UTR 20.0%
!! AAAAGGATTCTCATTTAATT+CGG - chr4_3:23320820-23320839 Msa0635130:intron 20.0%
!! TATACCTTATACAAACTATA+TGG - chr4_3:23320850-23320869 Msa0635130:intron 20.0%
!!! AAAACCATATAGTTTGTATA+AGG + chr4_3:23320857-23320876 None:intergenic 20.0%
!!! TCAGATGAAACAATTTTAAT+CGG - chr4_3:23321233-23321252 Msa0635130:intron 20.0%
!!! ATTGTTTAGGATTTAATTTG+TGG + chr4_3:23321411-23321430 None:intergenic 20.0%
!!! AGCTATGTTTTTAATTTGAA+TGG - chr4_3:23321479-23321498 Msa0635130:intron 20.0%
!! ATTTGAATGGTTGTTTAATT+TGG - chr4_3:23321492-23321511 Msa0635130:intron 20.0%
!! ATCATACTATTGTATTAGAA+AGG + chr4_3:23321797-23321816 None:intergenic 20.0%
!! TTTCTAATACAATAGTATGA+TGG - chr4_3:23321796-23321815 Msa0635130:intron 20.0%
!! AAAAAGAAAAATAGAAACCA+TGG - chr4_3:23322031-23322050 Msa0635130:five_prime_UTR 20.0%
!! TAAACTCATAATAAATGACT+TGG + chr4_3:23322061-23322080 None:intergenic 20.0%
! CGGAACAATTTAAGTAAATT+AGG - chr4_3:23320573-23320592 Msa0635130:three_prime_UTR 25.0%
! CAAAGAAATGGATAATAAGA+GGG + chr4_3:23320624-23320643 None:intergenic 25.0%
!!! GTTTTTTTTGTTACATTAGC+AGG + chr4_3:23320968-23320987 None:intergenic 25.0%
! AGTATTAATCACAACACTAA+CGG - chr4_3:23321009-23321028 Msa0635130:intron 25.0%
!!! CTTTTAAAAAATATCTGCAC+AGG + chr4_3:23321315-23321334 None:intergenic 25.0%
! TCAGGAAAGAATAAAAAGAA+TGG - chr4_3:23321528-23321547 Msa0635130:intron 25.0%
! AGAATGGAAATATGTTTGAA+CGG - chr4_3:23321544-23321563 Msa0635130:intron 25.0%
! GAGTAAATATGTCAAAATCA+TGG + chr4_3:23321673-23321692 None:intergenic 25.0%
! CACTCTAGTAAAAAAAAAGT+TGG + chr4_3:23321931-23321950 None:intergenic 25.0%
! CGGAACAATTTAAGTAAATT+AGG - chr4_3:23320573-23320592 Msa0635130:three_prime_UTR 25.0%
! CAAAGAAATGGATAATAAGA+GGG + chr4_3:23320624-23320643 None:intergenic 25.0%
!!! GTTTTTTTTGTTACATTAGC+AGG + chr4_3:23320968-23320987 None:intergenic 25.0%
! AGTATTAATCACAACACTAA+CGG - chr4_3:23321009-23321028 Msa0635130:intron 25.0%
!!! CTTTTAAAAAATATCTGCAC+AGG + chr4_3:23321315-23321334 None:intergenic 25.0%
! TCAGGAAAGAATAAAAAGAA+TGG - chr4_3:23321528-23321547 Msa0635130:intron 25.0%
! AGAATGGAAATATGTTTGAA+CGG - chr4_3:23321544-23321563 Msa0635130:intron 25.0%
! GAGTAAATATGTCAAAATCA+TGG + chr4_3:23321673-23321692 None:intergenic 25.0%
! CACTCTAGTAAAAAAAAAGT+TGG + chr4_3:23321931-23321950 None:intergenic 25.0%
CATAATCCTATCAAAGCTAA+AGG + chr4_3:23320548-23320567 None:intergenic 30.0%
GCAAAGAAATGGATAATAAG+AGG + chr4_3:23320625-23320644 None:intergenic 30.0%
ATAATTCTTGTCAGTGTGAT+TGG + chr4_3:23320764-23320783 None:intergenic 30.0%
GATTCTCATTTAATTCGGTT+TGG - chr4_3:23320825-23320844 Msa0635130:intron 30.0%
AAAAGTTGTAAAAGTTGCGA+AGG - chr4_3:23321330-23321349 Msa0635130:intron 30.0%
!! TGTTTAATTTGGACTTTGAC+AGG - chr4_3:23321503-23321522 Msa0635130:intron 30.0%
!! GTTTAATTTGGACTTTGACA+GGG - chr4_3:23321504-23321523 Msa0635130:intron 30.0%
TGATACCAAAGATAATGCAA+GGG + chr4_3:23321587-23321606 None:intergenic 30.0%
ATGATACCAAAGATAATGCA+AGG + chr4_3:23321588-23321607 None:intergenic 30.0%
! TTTTGCAAAAGCTATAAGTG+CGG - chr4_3:23321623-23321642 Msa0635130:intron 30.0%
! TTTTACTAGAGTGAAGAATG+CGG - chr4_3:23321938-23321957 Msa0635130:exon 30.0%
CATAATCCTATCAAAGCTAA+AGG + chr4_3:23320548-23320567 None:intergenic 30.0%
GCAAAGAAATGGATAATAAG+AGG + chr4_3:23320625-23320644 None:intergenic 30.0%
ATAATTCTTGTCAGTGTGAT+TGG + chr4_3:23320764-23320783 None:intergenic 30.0%
GATTCTCATTTAATTCGGTT+TGG - chr4_3:23320825-23320844 Msa0635130:intron 30.0%
AAAAGTTGTAAAAGTTGCGA+AGG - chr4_3:23321330-23321349 Msa0635130:intron 30.0%
!! TGTTTAATTTGGACTTTGAC+AGG - chr4_3:23321503-23321522 Msa0635130:intron 30.0%
!! GTTTAATTTGGACTTTGACA+GGG - chr4_3:23321504-23321523 Msa0635130:intron 30.0%
TGATACCAAAGATAATGCAA+GGG + chr4_3:23321587-23321606 None:intergenic 30.0%
ATGATACCAAAGATAATGCA+AGG + chr4_3:23321588-23321607 None:intergenic 30.0%
! TTTTGCAAAAGCTATAAGTG+CGG - chr4_3:23321623-23321642 Msa0635130:intron 30.0%
! TTTTACTAGAGTGAAGAATG+CGG - chr4_3:23321938-23321957 Msa0635130:exon 30.0%
GTGTGTATCTTGCAAAGAAA+TGG + chr4_3:23320636-23320655 None:intergenic 35.0%
ATTGTAGCAACAAACAGAGA+TGG + chr4_3:23320696-23320715 None:intergenic 35.0%
! ATCTCTGTTTGTTGCTACAA+TGG - chr4_3:23320695-23320714 Msa0635130:CDS 35.0%
GCTTTATGAAGAAAAGTTGG+TGG + chr4_3:23320731-23320750 None:intergenic 35.0%
! GGAGCTTTATGAAGAAAAGT+TGG + chr4_3:23320734-23320753 None:intergenic 35.0%
ATCACTACTTCTGCTTCAAA+AGG - chr4_3:23320803-23320822 Msa0635130:intron 35.0%
! ATGCTACAAGAACATTTTCG+TGG + chr4_3:23320887-23320906 None:intergenic 35.0%
TAATACTGACGATACTTAGC+AGG + chr4_3:23320996-23321015 None:intergenic 35.0%
ACTAGAGTTTCCAAACCATA+TGG - chr4_3:23321096-23321115 Msa0635130:intron 35.0%
TTCCAAACCATATGGTTGAA+AGG - chr4_3:23321104-23321123 Msa0635130:intron 35.0%
TCCAAACCATATGGTTGAAA+GGG - chr4_3:23321105-23321124 Msa0635130:intron 35.0%
AATAATACCACCTTACATCC+TGG + chr4_3:23321375-23321394 None:intergenic 35.0%
ATGGAAATATGTTTGAACGG+TGG - chr4_3:23321547-23321566 Msa0635130:intron 35.0%
! TAGCTTTTGCAAAATCACGA+TGG + chr4_3:23321617-23321636 None:intergenic 35.0%
! AAAGCTATAAGTGCGGTTTT+TGG - chr4_3:23321630-23321649 Msa0635130:intron 35.0%
GTATGATGGTATAGATGCTT+TGG - chr4_3:23321810-23321829 Msa0635130:CDS 35.0%
TTTACTAGAGTGAAGAATGC+GGG - chr4_3:23321939-23321958 Msa0635130:exon 35.0%
! ATAAATGACTTGGATTGCCA+TGG + chr4_3:23322051-23322070 None:intergenic 35.0%
GTGTGTATCTTGCAAAGAAA+TGG + chr4_3:23320636-23320655 None:intergenic 35.0%
ATTGTAGCAACAAACAGAGA+TGG + chr4_3:23320696-23320715 None:intergenic 35.0%
! ATCTCTGTTTGTTGCTACAA+TGG - chr4_3:23320695-23320714 Msa0635130:CDS 35.0%
GCTTTATGAAGAAAAGTTGG+TGG + chr4_3:23320731-23320750 None:intergenic 35.0%
! GGAGCTTTATGAAGAAAAGT+TGG + chr4_3:23320734-23320753 None:intergenic 35.0%
ATCACTACTTCTGCTTCAAA+AGG - chr4_3:23320803-23320822 Msa0635130:intron 35.0%
! ATGCTACAAGAACATTTTCG+TGG + chr4_3:23320887-23320906 None:intergenic 35.0%
TAATACTGACGATACTTAGC+AGG + chr4_3:23320996-23321015 None:intergenic 35.0%
ACTAGAGTTTCCAAACCATA+TGG - chr4_3:23321096-23321115 Msa0635130:intron 35.0%
TTCCAAACCATATGGTTGAA+AGG - chr4_3:23321104-23321123 Msa0635130:intron 35.0%
TCCAAACCATATGGTTGAAA+GGG - chr4_3:23321105-23321124 Msa0635130:intron 35.0%
AATAATACCACCTTACATCC+TGG + chr4_3:23321375-23321394 None:intergenic 35.0%
ATGGAAATATGTTTGAACGG+TGG - chr4_3:23321547-23321566 Msa0635130:intron 35.0%
! TAGCTTTTGCAAAATCACGA+TGG + chr4_3:23321617-23321636 None:intergenic 35.0%
! AAAGCTATAAGTGCGGTTTT+TGG - chr4_3:23321630-23321649 Msa0635130:intron 35.0%
GTATGATGGTATAGATGCTT+TGG - chr4_3:23321810-23321829 Msa0635130:CDS 35.0%
TTTACTAGAGTGAAGAATGC+GGG - chr4_3:23321939-23321958 Msa0635130:exon 35.0%
! ATAAATGACTTGGATTGCCA+TGG + chr4_3:23322051-23322070 None:intergenic 35.0%
AACCACTGATCACATTCACA+GGG - chr4_3:23320658-23320677 Msa0635130:three_prime_UTR 40.0%
TGTCTGTGATCTTGCTAAAG+CGG + chr4_3:23321044-23321063 None:intergenic 40.0%
ACCCTTTCAACCATATGGTT+TGG + chr4_3:23321109-23321128 None:intergenic 40.0%
TTGAAAGGGTCGATGTTGTT+TGG - chr4_3:23321119-23321138 Msa0635130:intron 40.0%
CAATAAGCTGATGTAGCTCA+TGG + chr4_3:23321270-23321289 None:intergenic 40.0%
TGTAAAAGTTGCGAAGGCAA+AGG - chr4_3:23321336-23321355 Msa0635130:intron 40.0%
GTAAAAGTTGCGAAGGCAAA+GGG - chr4_3:23321337-23321356 Msa0635130:intron 40.0%
TAAAAGTTGCGAAGGCAAAG+GGG - chr4_3:23321338-23321357 Msa0635130:intron 40.0%
CTTCTCCCTTGCATTATCTT+TGG - chr4_3:23321579-23321598 Msa0635130:intron 40.0%
AACTGATCAACCCAAATCCT+TGG + chr4_3:23321839-23321858 None:intergenic 40.0%
ATCTTTCTCCTGTTTGCTCT+GGG + chr4_3:23321890-23321909 None:intergenic 40.0%
TATCTTTCTCCTGTTTGCTC+TGG + chr4_3:23321891-23321910 None:intergenic 40.0%
TTACTAGAGTGAAGAATGCG+GGG - chr4_3:23321940-23321959 Msa0635130:exon 40.0%
AACCACTGATCACATTCACA+GGG - chr4_3:23320658-23320677 Msa0635130:three_prime_UTR 40.0%
TGTCTGTGATCTTGCTAAAG+CGG + chr4_3:23321044-23321063 None:intergenic 40.0%
ACCCTTTCAACCATATGGTT+TGG + chr4_3:23321109-23321128 None:intergenic 40.0%
TTGAAAGGGTCGATGTTGTT+TGG - chr4_3:23321119-23321138 Msa0635130:intron 40.0%
CAATAAGCTGATGTAGCTCA+TGG + chr4_3:23321270-23321289 None:intergenic 40.0%
TGTAAAAGTTGCGAAGGCAA+AGG - chr4_3:23321336-23321355 Msa0635130:intron 40.0%
GTAAAAGTTGCGAAGGCAAA+GGG - chr4_3:23321337-23321356 Msa0635130:intron 40.0%
TAAAAGTTGCGAAGGCAAAG+GGG - chr4_3:23321338-23321357 Msa0635130:intron 40.0%
CTTCTCCCTTGCATTATCTT+TGG - chr4_3:23321579-23321598 Msa0635130:intron 40.0%
AACTGATCAACCCAAATCCT+TGG + chr4_3:23321839-23321858 None:intergenic 40.0%
ATCTTTCTCCTGTTTGCTCT+GGG + chr4_3:23321890-23321909 None:intergenic 40.0%
TATCTTTCTCCTGTTTGCTC+TGG + chr4_3:23321891-23321910 None:intergenic 40.0%
TTACTAGAGTGAAGAATGCG+GGG - chr4_3:23321940-23321959 Msa0635130:exon 40.0%
ATAAGAGGGTTTGTCACGTG+TGG + chr4_3:23320610-23320629 None:intergenic 45.0%
CAACCACTGATCACATTCAC+AGG - chr4_3:23320657-23320676 Msa0635130:three_prime_UTR 45.0%
TTCCCTGTGAATGTGATCAG+TGG + chr4_3:23320663-23320682 None:intergenic 45.0%
GTAGCAACAAACAGAGATGG+AGG + chr4_3:23320693-23320712 None:intergenic 45.0%
! TTGTTGCTACAATGGTGCTG+TGG - chr4_3:23320703-23320722 Msa0635130:CDS 45.0%
! GTCAGTGTGATTGGTTGAAG+TGG + chr4_3:23320755-23320774 None:intergenic 45.0%
CATCGACCCTTTCAACCATA+TGG + chr4_3:23321114-23321133 None:intergenic 45.0%
CTTACATCCTGGACATTCGA+TGG + chr4_3:23321364-23321383 None:intergenic 45.0%
CATCGAATGTCCAGGATGTA+AGG - chr4_3:23321362-23321381 Msa0635130:intron 45.0%
TTTGGACTTTGACAGGGATC+AGG - chr4_3:23321510-23321529 Msa0635130:intron 45.0%
TATAGATGCTTTGGCTGCCA+AGG - chr4_3:23321819-23321838 Msa0635130:CDS 45.0%
TCTTTCTCCTGTTTGCTCTG+GGG + chr4_3:23321889-23321908 None:intergenic 45.0%
ATAAGAGGGTTTGTCACGTG+TGG + chr4_3:23320610-23320629 None:intergenic 45.0%
CAACCACTGATCACATTCAC+AGG - chr4_3:23320657-23320676 Msa0635130:three_prime_UTR 45.0%
TTCCCTGTGAATGTGATCAG+TGG + chr4_3:23320663-23320682 None:intergenic 45.0%
GTAGCAACAAACAGAGATGG+AGG + chr4_3:23320693-23320712 None:intergenic 45.0%
! TTGTTGCTACAATGGTGCTG+TGG - chr4_3:23320703-23320722 Msa0635130:CDS 45.0%
! GTCAGTGTGATTGGTTGAAG+TGG + chr4_3:23320755-23320774 None:intergenic 45.0%
CATCGACCCTTTCAACCATA+TGG + chr4_3:23321114-23321133 None:intergenic 45.0%
CTTACATCCTGGACATTCGA+TGG + chr4_3:23321364-23321383 None:intergenic 45.0%
CATCGAATGTCCAGGATGTA+AGG - chr4_3:23321362-23321381 Msa0635130:intron 45.0%
TTTGGACTTTGACAGGGATC+AGG - chr4_3:23321510-23321529 Msa0635130:intron 45.0%
TATAGATGCTTTGGCTGCCA+AGG - chr4_3:23321819-23321838 Msa0635130:CDS 45.0%
TCTTTCTCCTGTTTGCTCTG+GGG + chr4_3:23321889-23321908 None:intergenic 45.0%
CGAATGTCCAGGATGTAAGG+TGG - chr4_3:23321365-23321384 Msa0635130:intron 50.0%
TGCTTTGGCTGCCAAGGATT+TGG - chr4_3:23321825-23321844 Msa0635130:CDS 50.0%
GCTTTGGCTGCCAAGGATTT+GGG - chr4_3:23321826-23321845 Msa0635130:CDS 50.0%
TAGAGTGAAGAATGCGGGGA+TGG - chr4_3:23321944-23321963 Msa0635130:exon 50.0%
CGAATGTCCAGGATGTAAGG+TGG - chr4_3:23321365-23321384 Msa0635130:intron 50.0%
TGCTTTGGCTGCCAAGGATT+TGG - chr4_3:23321825-23321844 Msa0635130:CDS 50.0%
GCTTTGGCTGCCAAGGATTT+GGG - chr4_3:23321826-23321845 Msa0635130:CDS 50.0%
TAGAGTGAAGAATGCGGGGA+TGG - chr4_3:23321944-23321963 Msa0635130:exon 50.0%
AAAGGGGCCATCGAATGTCC+AGG - chr4_3:23321354-23321373 Msa0635130:intron 55.0%
TTGATCAGTTGCCCCAGCTG+TGG - chr4_3:23321849-23321868 Msa0635130:CDS 55.0%
AGTTGCCCCAGCTGTGGAAA+GGG - chr4_3:23321855-23321874 Msa0635130:CDS 55.0%
AACCCTCCCTTTCCACAGCT+GGG + chr4_3:23321864-23321883 None:intergenic 55.0%
AAAGGGGCCATCGAATGTCC+AGG - chr4_3:23321354-23321373 Msa0635130:intron 55.0%
TTGATCAGTTGCCCCAGCTG+TGG - chr4_3:23321849-23321868 Msa0635130:CDS 55.0%
AGTTGCCCCAGCTGTGGAAA+GGG - chr4_3:23321855-23321874 Msa0635130:CDS 55.0%
AACCCTCCCTTTCCACAGCT+GGG + chr4_3:23321864-23321883 None:intergenic 55.0%
CAGTTGCCCCAGCTGTGGAA+AGG - chr4_3:23321854-23321873 Msa0635130:CDS 60.0%
ACCCTCCCTTTCCACAGCTG+GGG + chr4_3:23321863-23321882 None:intergenic 60.0%
CAACCCTCCCTTTCCACAGC+TGG + chr4_3:23321865-23321884 None:intergenic 60.0%
GGGTTGACCCCAGAGCAAAC+AGG - chr4_3:23321879-23321898 Msa0635130:CDS 60.0%
CAGTTGCCCCAGCTGTGGAA+AGG - chr4_3:23321854-23321873 Msa0635130:CDS 60.0%
ACCCTCCCTTTCCACAGCTG+GGG + chr4_3:23321863-23321882 None:intergenic 60.0%
CAACCCTCCCTTTCCACAGC+TGG + chr4_3:23321865-23321884 None:intergenic 60.0%
GGGTTGACCCCAGAGCAAAC+AGG - chr4_3:23321879-23321898 Msa0635130:CDS 60.0%
TGCCCCAGCTGTGGAAAGGG+AGG - chr4_3:23321858-23321877 Msa0635130:CDS 65.0%
GCCCCAGCTGTGGAAAGGGA+GGG - chr4_3:23321859-23321878 Msa0635130:CDS 65.0%
TGCCCCAGCTGTGGAAAGGG+AGG - chr4_3:23321858-23321877 Msa0635130:CDS 65.0%
GCCCCAGCTGTGGAAAGGGA+GGG - chr4_3:23321859-23321878 Msa0635130:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 23320543 23322096 23320543 ID=Msa0635130;Name=Msa0635130
chr4_3 mRNA 23320543 23322096 23320543 ID=Msa0635130-mRNA-1;Parent=Msa0635130;Name=Msa0635130-mRNA-1;_AED=0.10;_eAED=0.10;_QI=143|0.5|1|1|0|0.33|3|150|113
chr4_3 exon 23320543 23320815 23320543 ID=Msa0635130-mRNA-1:exon:6037;Parent=Msa0635130-mRNA-1
chr4_3 exon 23321256 23321318 23321256 ID=Msa0635130-mRNA-1:exon:6036;Parent=Msa0635130-mRNA-1
chr4_3 exon 23321798 23322096 23321798 ID=Msa0635130-mRNA-1:exon:6035;Parent=Msa0635130-mRNA-1
chr4_3 five_prime_UTR 23321954 23322096 23321954 ID=Msa0635130-mRNA-1:five_prime_utr;Parent=Msa0635130-mRNA-1
chr4_3 CDS 23321798 23321953 23321798 ID=Msa0635130-mRNA-1:cds;Parent=Msa0635130-mRNA-1
chr4_3 CDS 23321256 23321318 23321256 ID=Msa0635130-mRNA-1:cds;Parent=Msa0635130-mRNA-1
chr4_3 CDS 23320693 23320815 23320693 ID=Msa0635130-mRNA-1:cds;Parent=Msa0635130-mRNA-1
chr4_3 three_prime_UTR 23320543 23320692 23320543 ID=Msa0635130-mRNA-1:three_prime_utr;Parent=Msa0635130-mRNA-1
Gene Sequence

>Msa0635130

ATGTCCTCCATCTCTGTTTGTTGCTACAATGGTGCTGTGGCTCCACCAACTTTTCTTCATAAAGCTCCACTTCAACCAATCACACTGACAAGAATTATACAACGAAGACAGAGCACAATCACTACTTCTGCTTCAAAAGGATTCTCATTTAATTCGATATTTTTTAAAAGTTGTAAAAGTTGCGAAGGCAAAGGGGCCATCGAATGTCCAGGATGTAAGATGCTTTGGCTGCCAAGGATTTGGGTTGATCAGTTGCCCCAGCTGTGGAAAGGGAGGGTTGACCCCAGAGCAAACAGGAGAAAGATAAAGAAGCTTCAAAACAACCAACTTTTTTTTTACTAG

Protein sequence

>Msa0635130

MSSISVCCYNGAVAPPTFLHKAPLQPITLTRIIQRRQSTITTSASKGFSFNSIFFKSCKSCEGKGAIECPGCKMLWLPRIWVDQLPQLWKGRVDPRANRRKIKKLQNNQLFFY*