AlfalfaGEDB | Msa0202090

M. sativa cultivar zhongmu-4 / Msa0202090

KEGG: -
GO: -
PFAM: PF18052.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202090	XP_003595124.1	94.397	928	27	1	1	903	1	928	0.0	1793

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202090	sp\|Q9SX38\|DRL4_ARATH	37.566	945	458	19	1	902	1	856	0.0	580

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202090	G7IID2	94.397	928	27	1	1	903	1	928	0.0	1793

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003630	Msa0202090	0.832404	9.637587e-56	-8.615850e-47
Msa0010770	Msa0202090	0.820270	7.495884e-53	-8.615850e-47
Msa0017320	Msa0202090	0.849658	2.807097e-60	-8.615850e-47
Msa0022550	Msa0202090	0.802120	6.522590e-49	-8.615850e-47
Msa0031180	Msa0202090	0.803001	4.293569e-49	-8.615850e-47
Msa0042550	Msa0202090	0.835549	1.573366e-56	-8.615850e-47
Msa0043500	Msa0202090	0.833214	6.064503e-56	-8.615850e-47
Msa0043650	Msa0202090	0.829670	4.521053e-55	-8.615850e-47
Msa0045550	Msa0202090	0.807997	3.844873e-50	-8.615850e-47
Msa0054820	Msa0202090	0.840526	8.247211e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202090	MtrunA17_Chr2g0299001	94.397	928	27	1	1	903	1	928	0.0	1793
Msa0202090	MtrunA17_Chr7g0219851	46.954	952	433	15	1	898	3	936	0.0	797
Msa0202090	MtrunA17_Chr5g0404741	34.829	936	509	27	1	880	1	891	4.78e-139	437
Msa0202090	MtrunA17_Chr5g0409971	30.932	944	575	24	1	900	1	911	3.31e-111	364
Msa0202090	MtrunA17_Chr3g0081391	29.718	959	579	29	1	899	1	924	9.40e-108	355
Msa0202090	MtrunA17_Chr3g0081211	29.106	962	580	29	1	899	1	923	4.36e-107	353
Msa0202090	MtrunA17_Chr5g0410021	31.375	953	556	32	1	900	1	908	3.35e-106	350
Msa0202090	MtrunA17_Chr3g0100961	28.662	949	590	24	1	903	1	908	5.04e-106	349
Msa0202090	MtrunA17_Chr5g0410001	30.137	949	566	29	6	900	5	910	7.59e-106	349
Msa0202090	MtrunA17_Chr5g0410031	29.990	957	571	31	1	900	1	915	1.64e-104	346

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202090	AT1G50180.1	37.566	945	458	19	1	902	1	856	0.0	580
Msa0202090	AT5G35450.2	35.646	937	527	21	1	902	1	896	2.70e-172	523
Msa0202090	AT5G35450.1	35.646	937	527	21	1	902	1	896	2.70e-172	523
Msa0202090	AT1G53350.1	34.741	947	533	19	1	903	1	906	5.41e-167	510
Msa0202090	AT5G43470.3	35.775	942	530	20	1	902	1	907	1.06e-166	509
Msa0202090	AT5G43470.2	35.775	942	530	20	1	902	1	907	1.06e-166	509
Msa0202090	AT5G43470.4	35.775	942	530	20	1	902	1	907	1.06e-166	509
Msa0202090	AT5G43470.1	35.775	942	530	20	1	902	1	907	1.06e-166	509
Msa0202090	AT1G58400.3	34.076	942	540	19	1	898	1	905	1.45e-165	506
Msa0202090	AT1G58400.2	34.076	942	540	19	1	898	1	905	1.45e-165	506

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Find 153 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGTGACCTTAACTG+AGG	0.692869	2_1:+24098969	None:intergenic
AAAATCTTAGAACTGAATTA+AGG	0.363148	2_1:-24102466	Msa0202090:CDS
AAACAGCTAGGTTAACTGAA+TGG	0.550430	2_1:-24099730	Msa0202090:CDS
AAAGCTTTATCAAGTTCAAG+TGG	0.544394	2_1:-24101772	Msa0202090:CDS
AAAGGCAAAGAACAACTTCT+AGG	0.334187	2_1:-24100253	Msa0202090:CDS
AAAGGTGCTATGTGTTGTCT+TGG	0.502380	2_1:-24098909	Msa0202090:CDS
AAATTGGGAAGAGAAATGGT+TGG	0.645592	2_1:-24100394	Msa0202090:CDS
AACTCAAGCAACCTTAAATT+TGG	0.242420	2_1:+24099044	None:intergenic
AAGATGAATCTCTCAAGAAT+TGG	0.362537	2_1:-24102400	Msa0202090:CDS
AAGCAAGGGATGTTTGGGAA+GGG	0.586598	2_1:-24101872	Msa0202090:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGAACTGAATTAAGGATGA+TGG	-	chr2_1:24098700-24098719	Msa0202090:exon	30.0%
AAGATGAATCTCTCAAGAAT+TGG	-	chr2_1:24098759-24098778	Msa0202090:CDS	30.0%
GTACCTTAAACAGAATCAAA+AGG	-	chr2_1:24098870-24098889	Msa0202090:CDS	30.0%
AAGCATCAAGTTCAATACAT+GGG	-	chr2_1:24099020-24099039	Msa0202090:CDS	30.0%
TTACTCTCATGTTATTGAAG+AGG	-	chr2_1:24099066-24099085	Msa0202090:CDS	30.0%
AGGTTTAGGAAAAACAACAT+TGG	-	chr2_1:24099186-24099205	Msa0202090:CDS	30.0%
TCTTCTCTTAACTCTTTAGA+AGG	+	chr2_1:24099334-24099353	None:intergenic	30.0%
AAAGTCTAAATCTTCATACC+TGG	+	chr2_1:24099667-24099686	None:intergenic	30.0%
ATGTCTAAATCTACATACAC+GGG	+	chr2_1:24099794-24099813	None:intergenic	30.0%
AAGATATCCCAAAGAGTTTA+TGG	-	chr2_1:24099871-24099890	Msa0202090:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	24098599	24102582	24098599	ID=Msa0202090;Name=Msa0202090
chr2_1	mRNA	24098599	24102582	24098599	ID=Msa0202090-mRNA-1;Parent=Msa0202090;Name=Msa0202090-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0.5\|1\|1\|1\|2\|120\|903
chr2_1	exon	24098599	24100442	24098599	ID=Msa0202090-mRNA-1:exon:9321;Parent=Msa0202090-mRNA-1
chr2_1	exon	24101595	24102582	24101595	ID=Msa0202090-mRNA-1:exon:9320;Parent=Msa0202090-mRNA-1
chr2_1	CDS	24101595	24102582	24101595	ID=Msa0202090-mRNA-1:cds;Parent=Msa0202090-mRNA-1
chr2_1	CDS	24098719	24100442	24098719	ID=Msa0202090-mRNA-1:cds;Parent=Msa0202090-mRNA-1
chr2_1	three_prime_UTR	24098599	24098718	24098599	ID=Msa0202090-mRNA-1:three_prime_utr;Parent=Msa0202090-mRNA-1

Gene Sequence

>Msa0202090

ATGGCCAAACCAATAGTAGACTTCACAGTACAAAAAATCAGTGATTTACTCATTGATGAAGCTGTGTTCTTATATGGAGTGAAAGACAAAGTGCAAAATCTTAGAACTGAATTAAGGATGATGGAATCTTACTTACAAGATGCAGATAGAAAGCAAGATGAAGATGAATCTCTCAAGAATTGGATTTCAGAAATCAGAGAAGCTTCTTATGATTCAGATGATGTCATTGAAGCATATGCACTCAAAGAAGCCTCAAGAAGAAACATGACAGGTACCTTAAACAGAATCAAAAGGTTTGTTTCAATTATCAACAGGTTAATAGAAATTCATCAAGTAGGTTCACAAGTTGATGCTATCATTTCTAGGATAACTAGTCTTACAAAAAGTTTAAAAACTTTTGGTATAAAAAGTGAAATAGGAGAAGCATCAAGTTCAATACATGGGAGAAACAAAGCTTTGAGAAGATCTTACTCTCATGTTATTGAAGAGGATATAATTGGTGTTGAAAATGATGTTAATGTTTTGGAGTCATGTTTGGTTGATAACAACAATAAGGGGTGCAAAATTGTTGCTATTTGGGGTATGGGAGGTTTAGGAAAAACAACATTGGCTAAGAAAGTATATCATAGTACTAAAGTTAGGCAAAATTTTGAGAGCTTAGCTTGGGCTTATATATCACAACATTGTCAAGCAAGGGATGTTTGGGAAGGGATTTTGTTGAAGCTTTTATCTCCTTCTAAAGAGTTAAGAGAAGAACTTGTGAGTATGAGAGACGATGAAGTTGCGAAAAAGCTTTATCAAGTTCAAGTGGAGAAGAAGTGTTTGGTAGTTCTTGATGATATTTGGAGTGTAGGTACTTGGAATAATCTGAGTCCTGGTTTTCCAAATGAGAGATCATTGTCTGTTGTTGGTAGTAAAATATTGCTTACTACTAGGAATACCGAGGTTGCAATGCATATGGATTCTACTTGTTATCGTCATGAACTGAACTCTAGAATCAGCACAGAGATGGAGAAATTGGGAAGAGAAATGGTTGGAAGATGTGGAGGTTTACCTCTAGCCATAATTGTCCTTGGAGGACTATTAGCATCAAAGCCAACATTTTATGAATGGGACACAGTGAGACAGAACATCAATTCATACCTAAGAAAAGCAAAAGGCAAAGAACAACTTCTAGGGGTATCTGAAGTACTAGCTTTGAGCTATTATGAATTACCTTACCAATTAAAACCATGTTTCCTACACTTAGCACATTTCCCTGAAAACTTAGAGATACAAACCAAGAAGCTTATAAGAACATGGGTGGCAGAAGGTATCATATCGTCGGTTCAAAATGCCGGAGATGGCGAGGAAGCTCTCGAGGACGTGGCACGACGTTACTTGACTGAACTCATTGAAAGGTGTATGATTCAGGTGGTTGAAAAGAGTTCAACAGGAAGGATTAGAACAGTTCAAATGCATAATCTCATGAGGGACCTATGTGTGTCTAAGGCATATGAAGAAAACTTTCTTGACATTATTGATTCGAGGAATGCAGATCAAACTAGTACCTCGAAAGCAAGACCGACTGGTAAAGTTCGACGGATTGCGTTATATCTTGATCAGGATGTTGATAGATTCTTCCCTAGACATTTAAAAAACCATCACCATCTTAGGTCTATACTCTGCTACCATGAAAAAACAGCTAGGTTAACTGAATGGAGTTTGATGAAATCAGTTTTCAAAAAGTGCAAGTTACTTAGAGTTTTGAACCTGGAAGGAATTCAATGTCAAATGGGAAAATTACCTAAAGAAATTGGCTTTTTGATCCATTTAAGGTTTCTAAGTCTAAGAAACACAAAAATTGATGAACTGCCAAATTCAATAGGAAATTTAAAGTGCTTGCAAACCCTAGACCTACTCACAGGAAATTCAACAGTTCAAATACCAAATGTCATAGGAAACATGGAAAAATTGGGACATTTATATCTACCTGAATCATGTGGCAATGGCATTGAAAAATGGCAACTATCCAATCTGAAAAACTTGCAAACTTTGGTTAACTTCCCTGCTGAGAAATGTGATGTAAAAGATCTCATGAAACTAACCAATTTAAGAAAATTGGTAATAGATGATCCTAATTATGGCGATATCTTCAAAAGTGCTAATGTAACCTTCAACTACCTCGAGTCATTGTTTTACGTTAGTTCTGAGGAAATATCAGTTCTTGATGTTTCTGCAGGGTGCCCTAATCTTTACAAGCTACACATAGAAGGGCCAATAAGTAATCTTCCACAACCAAGCCAAATTTCATCAAAACTTGCTAAGCTCAAATTACAAGGTTCTGGACTTGTTGCCGATCCAATGACAACATTGGAGAAGCTACCAAATTTAAGGTTGCTTGAGTTACAGCTTGATTCATTTTTAGGAAAGCAAATGGTTTGTTCAAGCAAAGGTTTTCCTCAGTTAAGGTCACTTGTTTTGAGTGATTTGTCTAATCTTGAACAGTGGAAATTGGAGAAAGGTGCTATGTGTTGTCTTGGGAAGCTTGAGATTTCAAATTGTACTAAGCTTGAGGTTGTTCCAGAAGAGATTAGGTTTGTAAGTAGTCTTAAGGATTTGGAGATTAGATCAATGTTTGCTGCATTTAGAATTAAGCTTGAGAAAGGTGGTGATGAACATTACAAAGTTCAACATGTTCCATCTTTGGTATTTCGTTACTGTGACTATTAG

Protein sequence

>Msa0202090

MAKPIVDFTVQKISDLLIDEAVFLYGVKDKVQNLRTELRMMESYLQDADRKQDEDESLKNWISEIREASYDSDDVIEAYALKEASRRNMTGTLNRIKRFVSIINRLIEIHQVGSQVDAIISRITSLTKSLKTFGIKSEIGEASSSIHGRNKALRRSYSHVIEEDIIGVENDVNVLESCLVDNNNKGCKIVAIWGMGGLGKTTLAKKVYHSTKVRQNFESLAWAYISQHCQARDVWEGILLKLLSPSKELREELVSMRDDEVAKKLYQVQVEKKCLVVLDDIWSVGTWNNLSPGFPNERSLSVVGSKILLTTRNTEVAMHMDSTCYRHELNSRISTEMEKLGREMVGRCGGLPLAIIVLGGLLASKPTFYEWDTVRQNINSYLRKAKGKEQLLGVSEVLALSYYELPYQLKPCFLHLAHFPENLEIQTKKLIRTWVAEGIISSVQNAGDGEEALEDVARRYLTELIERCMIQVVEKSSTGRIRTVQMHNLMRDLCVSKAYEENFLDIIDSRNADQTSTSKARPTGKVRRIALYLDQDVDRFFPRHLKNHHHLRSILCYHEKTARLTEWSLMKSVFKKCKLLRVLNLEGIQCQMGKLPKEIGFLIHLRFLSLRNTKIDELPNSIGNLKCLQTLDLLTGNSTVQIPNVIGNMEKLGHLYLPESCGNGIEKWQLSNLKNLQTLVNFPAEKCDVKDLMKLTNLRKLVIDDPNYGDIFKSANVTFNYLESLFYVSSEEISVLDVSAGCPNLYKLHIEGPISNLPQPSQISSKLAKLKLQGSGLVADPMTTLEKLPNLRLLELQLDSFLGKQMVCSSKGFPQLRSLVLSDLSNLEQWKLEKGAMCCLGKLEISNCTKLEVVPEEIRFVSSLKDLEIRSMFAAFRIKLEKGGDEHYKVQHVPSLVFRYCDY*