Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014321.t1 | XP_003603851.1 | 99.1 | 451 | 4 | 0 | 1 | 451 | 1 | 451 | 1.60E-251 | 878.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014321.t1 | P12859 | 94.0 | 451 | 27 | 0 | 1 | 451 | 1 | 451 | 6.1e-244 | 844.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014321.t1 | G7J5Y4 | 99.1 | 451 | 4 | 0 | 1 | 451 | 1 | 451 | 1.1e-251 | 878.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90626 | MS.gene014321 | PPI |
| MS.gene050456 | MS.gene014321 | PPI |
| MS.gene30174 | MS.gene014321 | PPI |
| MS.gene30177 | MS.gene014321 | PPI |
| MS.gene21888 | MS.gene014321 | PPI |
| MS.gene82740 | MS.gene014321 | PPI |
| MS.gene024753 | MS.gene014321 | PPI |
| MS.gene30172 | MS.gene014321 | PPI |
| MS.gene027071 | MS.gene014321 | PPI |
| MS.gene024334 | MS.gene014321 | PPI |
| MS.gene027074 | MS.gene014321 | PPI |
| MS.gene014321 | MS.gene027072 | PPI |
| MS.gene050457 | MS.gene014321 | PPI |
| MS.gene46611 | MS.gene014321 | PPI |
| MS.gene81658 | MS.gene014321 | PPI |
| MS.gene81660 | MS.gene014321 | PPI |
| MS.gene30176 | MS.gene014321 | PPI |
| MS.gene29768 | MS.gene014321 | PPI |
| MS.gene027073 | MS.gene014321 | PPI |
| MS.gene51927 | MS.gene014321 | PPI |
| MS.gene92674 | MS.gene014321 | PPI |
| MS.gene81663 | MS.gene014321 | PPI |
| MS.gene058128 | MS.gene014321 | PPI |
| MS.gene027075 | MS.gene014321 | PPI |
| MS.gene91851 | MS.gene014321 | PPI |
| MS.gene98540 | MS.gene014321 | PPI |
| MS.gene014321 | MS.gene72216 | PPI |
| MS.gene52287 | MS.gene014321 | PPI |
| MS.gene21734 | MS.gene014321 | PPI |
| MS.gene77885 | MS.gene014321 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014321.t1 | MTR_3g115920 | 99.113 | 451 | 4 | 0 | 1 | 451 | 1 | 451 | 0.0 | 915 |
| MS.gene014321.t1 | MTR_3g115920 | 100.000 | 407 | 0 | 0 | 1 | 407 | 1 | 407 | 0.0 | 828 |
| MS.gene014321.t1 | MTR_3g115920 | 98.738 | 317 | 4 | 0 | 135 | 451 | 1 | 317 | 0.0 | 641 |
| MS.gene014321.t1 | MTR_7g084800 | 74.742 | 388 | 90 | 5 | 38 | 422 | 21 | 403 | 0.0 | 528 |
| MS.gene014321.t1 | MTR_2g065470 | 51.045 | 335 | 156 | 6 | 82 | 414 | 20 | 348 | 2.69e-108 | 325 |
| MS.gene014321.t1 | MTR_2g065470 | 45.346 | 419 | 212 | 10 | 1 | 414 | 1 | 407 | 3.91e-108 | 326 |
| MS.gene014321.t1 | MTR_2g065470 | 44.903 | 412 | 210 | 10 | 1 | 407 | 1 | 400 | 2.11e-104 | 316 |
| MS.gene014321.t1 | MTR_4g103920 | 48.680 | 341 | 166 | 7 | 84 | 421 | 4 | 338 | 1.04e-100 | 305 |
| MS.gene014321.t1 | MTR_3g085850 | 47.447 | 333 | 166 | 7 | 85 | 414 | 6 | 332 | 2.26e-100 | 303 |
| MS.gene014321.t1 | MTR_6g022630 | 46.951 | 328 | 165 | 7 | 83 | 407 | 1 | 322 | 1.30e-95 | 291 |
| MS.gene014321.t1 | MTR_3g085850 | 48.966 | 290 | 142 | 5 | 127 | 414 | 2 | 287 | 8.73e-93 | 283 |
| MS.gene014321.t1 | MTR_4g103920 | 51.751 | 257 | 116 | 6 | 84 | 337 | 4 | 255 | 1.80e-79 | 247 |
| MS.gene014321.t1 | MTR_8g046560 | 44.314 | 255 | 123 | 8 | 166 | 407 | 10 | 258 | 1.49e-54 | 190 |
| MS.gene014321.t1 | MTR_1680s0010 | 52.632 | 133 | 62 | 1 | 262 | 394 | 1 | 132 | 6.93e-33 | 128 |
| MS.gene014321.t1 | MTR_8g464820 | 45.578 | 147 | 69 | 3 | 262 | 407 | 1 | 137 | 4.68e-27 | 112 |
| MS.gene014321.t1 | MTR_7g056277 | 94.444 | 54 | 3 | 0 | 182 | 235 | 132 | 185 | 2.18e-25 | 109 |
| MS.gene014321.t1 | MTR_0776s0010 | 39.669 | 121 | 71 | 2 | 86 | 205 | 1789 | 1908 | 1.27e-19 | 92.8 |
| MS.gene014321.t1 | MTR_5g019590 | 85.714 | 35 | 5 | 0 | 221 | 255 | 38 | 72 | 5.95e-13 | 66.6 |
| MS.gene014321.t1 | MTR_2g078600 | 32.117 | 137 | 91 | 2 | 226 | 361 | 8 | 143 | 8.96e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014321.t1 | AT1G42970 | 84.989 | 453 | 60 | 3 | 1 | 451 | 1 | 447 | 0.0 | 768 |
| MS.gene014321.t1 | AT1G12900 | 75.325 | 385 | 92 | 3 | 38 | 422 | 59 | 440 | 0.0 | 543 |
| MS.gene014321.t1 | AT1G12900 | 75.325 | 385 | 92 | 3 | 38 | 422 | 17 | 398 | 0.0 | 542 |
| MS.gene014321.t1 | AT3G26650 | 75.969 | 387 | 85 | 6 | 39 | 422 | 14 | 395 | 0.0 | 534 |
| MS.gene014321.t1 | AT1G12900 | 81.395 | 344 | 61 | 3 | 79 | 422 | 9 | 349 | 0.0 | 523 |
| MS.gene014321.t1 | AT1G12900 | 81.395 | 344 | 61 | 3 | 79 | 422 | 9 | 349 | 0.0 | 523 |
| MS.gene014321.t1 | AT1G12900 | 85.600 | 250 | 33 | 3 | 173 | 422 | 70 | 316 | 7.78e-134 | 388 |
| MS.gene014321.t1 | AT1G79530 | 51.603 | 343 | 158 | 6 | 79 | 419 | 80 | 416 | 1.38e-111 | 335 |
| MS.gene014321.t1 | AT1G16300 | 44.988 | 409 | 202 | 9 | 28 | 419 | 12 | 414 | 3.36e-108 | 327 |
| MS.gene014321.t1 | AT3G04120 | 48.348 | 333 | 163 | 7 | 85 | 414 | 5 | 331 | 1.20e-100 | 304 |
| MS.gene014321.t1 | AT1G13440 | 47.447 | 333 | 166 | 7 | 85 | 414 | 5 | 331 | 5.64e-100 | 303 |
| MS.gene014321.t1 | AT1G13440 | 42.943 | 333 | 153 | 7 | 85 | 414 | 5 | 303 | 1.35e-81 | 254 |
Find 144 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTCAAAGAGTGGTGGATT+TGG | 0.255900 | 3.4:-98875857 | MS.gene014321:CDS |
| TGTATTTGTGCAGAGGCTTC+TGG | 0.306310 | 3.4:-98876706 | MS.gene014321:intron |
| TGGATGTGCTTTCCGGCTCC+AGG | 0.316464 | 3.4:+98877461 | None:intergenic |
| AGAAGACTCTCTAGCATTAC+TGG | 0.316626 | 3.4:+98878691 | None:intergenic |
| AGAGACTGTTGCCAAGTTAA+AGG | 0.332305 | 3.4:-98878071 | MS.gene014321:CDS |
| TTGAAATATGATTCTATGCT+TGG | 0.332977 | 3.4:-98877796 | MS.gene014321:CDS |
| ACCTGCTTGGATGTGCTTTC+CGG | 0.335594 | 3.4:+98877454 | None:intergenic |
| AATGAGACTATTACAGTTGA+TGG | 0.342734 | 3.4:-98877742 | MS.gene014321:CDS |
| AGCTGTGATGATAACTTTCT+TGG | 0.347115 | 3.4:+98877430 | None:intergenic |
| CTCCCTGCTTGAGCGGTGCC+TGG | 0.347369 | 3.4:+98875811 | None:intergenic |
| GGGATCCTCTTAAGCTTCCT+TGG | 0.348148 | 3.4:-98877693 | MS.gene014321:CDS |
| ATGACAATGAATGGGGTTAC+AGG | 0.348712 | 3.4:-98876308 | MS.gene014321:intron |
| GGAATATCAGCGCCCTTTGC+AGG | 0.358017 | 3.4:+98877407 | None:intergenic |
| AGCCTTGGCTGCTCCTGTGC+TGG | 0.378441 | 3.4:+98876626 | None:intergenic |
| TATATTTCCAGGAATTGTTA+AGG | 0.381383 | 3.4:-98877023 | MS.gene014321:intron |
| TATTGACTCTTCCTTGACTA+TGG | 0.388165 | 3.4:-98876367 | MS.gene014321:CDS |
| TTCGACCGTGCCAGCATCTC+AGG | 0.393236 | 3.4:+98878011 | None:intergenic |
| AATGTTCAGTGCTGCAGCCC+TGG | 0.393594 | 3.4:+98876656 | None:intergenic |
| TGCTCCCTTTGTGAAGATCC+TGG | 0.407466 | 3.4:-98877152 | MS.gene014321:CDS |
| GATATTCCAACTTACGTTGT+TGG | 0.408355 | 3.4:-98877392 | MS.gene014321:CDS |
| GATGGAAATCTTGTGCTTGT+AGG | 0.410234 | 3.4:+98878903 | None:intergenic |
| GCAAATTATAATCAGGCCAT+TGG | 0.410743 | 3.4:-98878112 | MS.gene014321:intron |
| TATGGTCATGGGAGATGATA+TGG | 0.417158 | 3.4:-98876349 | MS.gene014321:CDS |
| ATATTTCCAGGAATTGTTAA+GGG | 0.418720 | 3.4:-98877022 | MS.gene014321:intron |
| CCTTTGAGGCACATTGAGTT+GGG | 0.421860 | 3.4:+98878862 | None:intergenic |
| CTCTTCCTTGACTATGGTCA+TGG | 0.425322 | 3.4:-98876361 | MS.gene014321:CDS |
| GGATCCTCTTAAGCTTCCTT+GGG | 0.426766 | 3.4:-98877692 | MS.gene014321:CDS |
| TTATGATGTCGGCTACTTCA+TGG | 0.429613 | 3.4:+98877348 | None:intergenic |
| TCAGGGAACTGGAGTGTTTG+TGG | 0.437834 | 3.4:-98877489 | MS.gene014321:intron |
| CTTGGCTGCTCCTGTGCTGG+TGG | 0.441233 | 3.4:+98876629 | None:intergenic |
| AATGCAAAGTTTATGAATAG+AGG | 0.442277 | 3.4:-98875741 | None:intergenic |
| AGGTCAACAACTGAAACATT+AGG | 0.444204 | 3.4:+98876540 | None:intergenic |
| AAGCTTCCTTGGGCTGAGCT+TGG | 0.444289 | 3.4:-98877682 | MS.gene014321:CDS |
| CCATCCTTGTTGTCTCTAGC+AGG | 0.444814 | 3.4:-98877714 | MS.gene014321:CDS |
| ATGAAGTAGCCGACATCATA+AGG | 0.446117 | 3.4:-98877346 | MS.gene014321:intron |
| TCAGCCCAAGGAAGCTTAAG+AGG | 0.447395 | 3.4:+98877688 | None:intergenic |
| TTTACTCCAACAACGTAAGT+TGG | 0.460656 | 3.4:+98877386 | None:intergenic |
| AAGATCCTGGATGAAGAATT+CGG | 0.462539 | 3.4:-98877139 | MS.gene014321:intron |
| TTGGCTGCTCCTGTGCTGGT+GGG | 0.463193 | 3.4:+98876630 | None:intergenic |
| TGGCCAGGCACCGCTCAAGC+AGG | 0.465268 | 3.4:-98875814 | MS.gene014321:CDS |
| AAAGAGTGAGAGGCCTTTGA+TGG | 0.466577 | 3.4:+98878885 | None:intergenic |
| ATCAATGGTTTCGGACGCAT+TGG | 0.469023 | 3.4:-98878043 | MS.gene014321:CDS |
| AAGGTAGCAATCAATGGTTT+CGG | 0.472649 | 3.4:-98878052 | MS.gene014321:CDS |
| ACCTTTGAGGCACATTGAGT+TGG | 0.481118 | 3.4:+98878861 | None:intergenic |
| AAGTTAAAGGTAGCAATCAA+TGG | 0.481757 | 3.4:-98878058 | MS.gene014321:CDS |
| CACCAGCACAGGAGCAGCCA+AGG | 0.482178 | 3.4:-98876628 | MS.gene014321:CDS |
| CCCAACTCAATGTGCCTCAA+AGG | 0.482556 | 3.4:-98878862 | MS.gene014321:intron |
| TCTAGTGCTGCCACAGCTCA+AGG | 0.485246 | 3.4:-98876598 | MS.gene014321:CDS |
| ATGGAAATCTTGTGCTTGTA+GGG | 0.485305 | 3.4:+98878904 | None:intergenic |
| TTGCTTGGTATGACAATGAA+TGG | 0.485506 | 3.4:-98876317 | MS.gene014321:CDS |
| CATTGGATCAACTGCTGTGA+GGG | 0.487373 | 3.4:-98878095 | MS.gene014321:CDS |
| AGCAGGGAGTGGAGATCCAT+TGG | 0.488395 | 3.4:-98875797 | MS.gene014321:CDS |
| ATTGATTGCTACCTTTAACT+TGG | 0.488459 | 3.4:+98878060 | None:intergenic |
| TAACTTTCTTGGCACCTGCT+TGG | 0.490883 | 3.4:+98877441 | None:intergenic |
| GAAGAAATTTCCTGAGATGC+TGG | 0.490952 | 3.4:-98878021 | MS.gene014321:CDS |
| CAGAGAGAGTGAAACCTTTG+AGG | 0.495920 | 3.4:+98878848 | None:intergenic |
| AAAGGGAGCAAGACAGTTTG+TGG | 0.498610 | 3.4:+98877165 | None:intergenic |
| CACATCTAGTAGCAAACAAA+TGG | 0.498642 | 3.4:-98875834 | MS.gene014321:CDS |
| TGGAATTGACATTGTCATTG+AGG | 0.500940 | 3.4:-98877662 | MS.gene014321:intron |
| TGCTTGGTATGACAATGAAT+GGG | 0.502219 | 3.4:-98876316 | MS.gene014321:CDS |
| GGCACCGCTCAAGCAGGGAG+TGG | 0.504031 | 3.4:-98875808 | MS.gene014321:CDS |
| TGGCTGCTCCTGTGCTGGTG+GGG | 0.506396 | 3.4:+98876631 | None:intergenic |
| GCTTACCGAATTCTTCATCC+AGG | 0.508541 | 3.4:+98877134 | None:intergenic |
| GGGACCATTGAAAGGTGTAT+TGG | 0.515641 | 3.4:-98876448 | MS.gene014321:CDS |
| TCATCCAGGATCTTCACAAA+GGG | 0.515849 | 3.4:+98877148 | None:intergenic |
| GGAGTGTTTGTGGATGGCCC+TGG | 0.517318 | 3.4:-98877479 | MS.gene014321:CDS |
| GAGATGCTGGCACGGTCGAA+AGG | 0.519276 | 3.4:-98878008 | MS.gene014321:CDS |
| ATCATCACAGCTCCTGCAAA+GGG | 0.520327 | 3.4:-98877419 | MS.gene014321:CDS |
| AACATTGTCCCCACCAGCAC+AGG | 0.520340 | 3.4:-98876639 | MS.gene014321:CDS |
| GCCGGAAAGCACATCCAAGC+AGG | 0.525097 | 3.4:-98877455 | MS.gene014321:CDS |
| GGATGTGCTTTCCGGCTCCA+GGG | 0.530672 | 3.4:+98877462 | None:intergenic |
| TTTGTGGATGGCCCTGGAGC+CGG | 0.533936 | 3.4:-98877473 | MS.gene014321:CDS |
| TGTGGTGAATGTTGCGAAGA+AGG | 0.537700 | 3.4:-98876517 | MS.gene014321:CDS |
| GTCTCCTGTGTAGGAATGTG+TGG | 0.543087 | 3.4:+98876988 | None:intergenic |
| TTGTAGAAGCTAAAGCTGCA+TGG | 0.544120 | 3.4:+98878931 | None:intergenic |
| ACAGGGACTTGAGAAGAGCC+AGG | 0.544310 | 3.4:-98876674 | MS.gene014321:CDS |
| ATAAACTTTGCATTCCTCAT+CGG | 0.548279 | 3.4:+98875750 | None:intergenic |
| CCTCACAGCAGTTGATCCAA+TGG | 0.549314 | 3.4:+98878096 | None:intergenic |
| CTCTCTAGCATTACTGGCAT+AGG | 0.549910 | 3.4:+98878697 | None:intergenic |
| GGCCAGGCACCGCTCAAGCA+GGG | 0.554341 | 3.4:-98875813 | MS.gene014321:CDS |
| TGTAGAAGCTAAAGCTGCAT+GGG | 0.556274 | 3.4:+98878932 | None:intergenic |
| CTTTGCATTCCTCATCGGAC+GGG | 0.556540 | 3.4:+98875755 | None:intergenic |
| TGTTTCAGTTGTTGACCTTG+TGG | 0.563274 | 3.4:-98876535 | MS.gene014321:CDS |
| TTTGCTTGTGCAGAGACTTG+AGG | 0.564688 | 3.4:-98878759 | MS.gene014321:intron |
| AAAGCCTTACCTTATGATGT+CGG | 0.566701 | 3.4:+98877337 | None:intergenic |
| TATCATCACAGCTCCTGCAA+AGG | 0.567484 | 3.4:-98877420 | MS.gene014321:CDS |
| ATATGGTCAAGGTGGTTGCT+TGG | 0.572598 | 3.4:-98876332 | MS.gene014321:CDS |
| GTAGGAATGTGTGGTTGTCA+TGG | 0.573317 | 3.4:+98876997 | None:intergenic |
| ACATCCAATACACCTTTCAA+TGG | 0.575028 | 3.4:+98876444 | None:intergenic |
| GTCTCACAGAAGTCCTCCAA+TGG | 0.575066 | 3.4:+98875781 | None:intergenic |
| CCTGCTAGAGACAACAAGGA+TGG | 0.575224 | 3.4:+98877714 | None:intergenic |
| CATCCTTGTTGTCTCTAGCA+GGG | 0.575538 | 3.4:-98877713 | MS.gene014321:CDS |
| TTGAGCTTTCCCTTGAGCTG+TGG | 0.576142 | 3.4:+98876588 | None:intergenic |
| GCTTGTGCAGAGACTTGAGG+TGG | 0.577189 | 3.4:-98878756 | MS.gene014321:intron |
| GGAGTAAATGAGCAAGACTA+CGG | 0.579497 | 3.4:-98877371 | MS.gene014321:CDS |
| GGCTTCTGGATGCTTCACAC+AGG | 0.580102 | 3.4:-98876692 | MS.gene014321:CDS |
| ATATACCTGGTCTCCTGTGT+AGG | 0.580151 | 3.4:+98876979 | None:intergenic |
| CTAGTAGCAAACAAATGGCC+AGG | 0.581197 | 3.4:-98875829 | MS.gene014321:CDS |
| AGCATTCAGAAAGGCAGCTG+AGG | 0.582409 | 3.4:-98876469 | MS.gene014321:CDS |
| TGATTTCAGTCAAAGAGTGG+TGG | 0.586479 | 3.4:-98875863 | MS.gene014321:intron |
| CTTGAGGTGGCTGAATTCAG+TGG | 0.586722 | 3.4:-98878743 | MS.gene014321:CDS |
| ATCTCCACTCCCTGCTTGAG+CGG | 0.587556 | 3.4:+98875804 | None:intergenic |
| ACATTCCTACACAGGAGACC+AGG | 0.591972 | 3.4:-98876984 | MS.gene014321:intron |
| CTGCTAGAGACAACAAGGAT+GGG | 0.592139 | 3.4:+98877715 | None:intergenic |
| AGGGAGTGGAGATCCATTGG+AGG | 0.594539 | 3.4:-98875794 | MS.gene014321:CDS |
| TTGACAACAATTACTTCGAG+TGG | 0.594963 | 3.4:+98877980 | None:intergenic |
| TTCATCCAGGATCTTCACAA+AGG | 0.595211 | 3.4:+98877147 | None:intergenic |
| GCAGCTGAGGGACCATTGAA+AGG | 0.596252 | 3.4:-98876456 | MS.gene014321:CDS |
| GTCAATAGTTGAAGAAACAT+CGG | 0.596396 | 3.4:+98876383 | None:intergenic |
| GGAACTGGAGTGTTTGTGGA+TGG | 0.597007 | 3.4:-98877485 | MS.gene014321:CDS |
| ACTTTGCATTCCTCATCGGA+CGG | 0.598687 | 3.4:+98875754 | None:intergenic |
| GCATTCAGAAAGGCAGCTGA+GGG | 0.599413 | 3.4:-98876468 | MS.gene014321:CDS |
| TGTCAATGCAGCATTCAGAA+AGG | 0.602285 | 3.4:-98876478 | MS.gene014321:CDS |
| AATTTCCTGAGATGCTGGCA+CGG | 0.602992 | 3.4:-98878016 | MS.gene014321:CDS |
| TCTTCCTTGACTATGGTCAT+GGG | 0.605006 | 3.4:-98876360 | MS.gene014321:CDS |
| CTAGTGCTGCCACAGCTCAA+GGG | 0.606922 | 3.4:-98876597 | MS.gene014321:CDS |
| GTGGTGAATGTTGCGAAGAA+GGG | 0.613677 | 3.4:-98876516 | MS.gene014321:CDS |
| CAGCTCAAGGGAAAGCTCAA+CGG | 0.614061 | 3.4:-98876585 | MS.gene014321:CDS |
| ATCTCCCATGACCATAGTCA+AGG | 0.618363 | 3.4:+98876356 | None:intergenic |
| ACAACTGAAACATTAGGTGT+TGG | 0.619133 | 3.4:+98876546 | None:intergenic |
| TTGAAGAAACATCGGTGCAG+CGG | 0.621950 | 3.4:+98876391 | None:intergenic |
| CAGCACTAGAGAGACAGCCT+TGG | 0.622925 | 3.4:+98876611 | None:intergenic |
| CGGAAGTCAACAGACACAAG+TGG | 0.626646 | 3.4:+98876411 | None:intergenic |
| TCAATTCCAAGCTCAGCCCA+AGG | 0.629195 | 3.4:+98877676 | None:intergenic |
| ATTAGGTGTTGGCACACGAA+GGG | 0.632209 | 3.4:+98876557 | None:intergenic |
| AAGCACAAGATTTCCATCAA+AGG | 0.632662 | 3.4:-98878898 | MS.gene014321:CDS |
| TTGAGTTGGGAAAGAGTGAG+AGG | 0.635785 | 3.4:+98878875 | None:intergenic |
| AGCTGCTCAACTCGCAACCA+AGG | 0.637355 | 3.4:-98878654 | MS.gene014321:intron |
| CATGGGAGATGATATGGTCA+AGG | 0.639283 | 3.4:-98876343 | MS.gene014321:CDS |
| GCTTCTGGATGCTTCACACA+GGG | 0.640300 | 3.4:-98876691 | MS.gene014321:CDS |
| CATTAGGTGTTGGCACACGA+AGG | 0.643390 | 3.4:+98876556 | None:intergenic |
| AGAAGCTAAAGCTGCATGGG+TGG | 0.646501 | 3.4:+98878935 | None:intergenic |
| ACAACCACACATTCCTACAC+AGG | 0.647760 | 3.4:-98876992 | MS.gene014321:CDS |
| ATTGGATCAACTGCTGTGAG+GGG | 0.655692 | 3.4:-98878094 | MS.gene014321:CDS |
| TGAGACAAACCCGTCCGATG+AGG | 0.658525 | 3.4:-98875764 | MS.gene014321:CDS |
| CAGGGACTTGAGAAGAGCCA+GGG | 0.658771 | 3.4:-98876673 | MS.gene014321:CDS |
| GATCCCTGCTAGAGACAACA+AGG | 0.660973 | 3.4:+98877710 | None:intergenic |
| CCATTGGATCAACTGCTGTG+AGG | 0.662223 | 3.4:-98878096 | MS.gene014321:CDS |
| TCTTCGCAACATTCACCACA+AGG | 0.675251 | 3.4:+98876520 | None:intergenic |
| TGGTGATTTCAGTCAAAGAG+TGG | 0.700344 | 3.4:-98875866 | MS.gene014321:intron |
| GCTTGGTATGACAATGAATG+GGG | 0.708873 | 3.4:-98876315 | MS.gene014321:CDS |
| GTAATTGTTGTCAATGACAG+TGG | 0.725098 | 3.4:-98877971 | MS.gene014321:CDS |
| GGGAGATGATATGGTCAAGG+TGG | 0.737175 | 3.4:-98876340 | MS.gene014321:CDS |
| ATTGTTGTCAATGACAGTGG+TGG | 0.737380 | 3.4:-98877968 | MS.gene014321:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATCTAAAAAGAACTTA+TGG | - | chr3.4:98878614-98878633 | MS.gene014321:intron | 15.0% |
| !! | ATTACTTTAATGATCTTTAA+GGG | + | chr3.4:98876485-98876504 | None:intergenic | 15.0% |
| !! | TATTACTTTAATGATCTTTA+AGG | + | chr3.4:98876486-98876505 | None:intergenic | 15.0% |
| !!! | AAATAAATTCAATTTGCTTA+TGG | - | chr3.4:98876545-98876564 | MS.gene014321:CDS | 15.0% |
| !! | AAGCTATTGGAAATAAATAA+TGG | + | chr3.4:98877784-98877803 | None:intergenic | 20.0% |
| !! | TTTATGCTACATATAAAAGA+AGG | + | chr3.4:98876108-98876127 | None:intergenic | 20.0% |
| !!! | AAGTTAATGAATTTTTGTTC+AGG | - | chr3.4:98877176-98877195 | MS.gene014321:CDS | 20.0% |
| !!! | ACATGTTTTATATATCTCAT+TGG | - | chr3.4:98876065-98876084 | MS.gene014321:intron | 20.0% |
| !!! | AGTTAATGAATTTTTGTTCA+GGG | - | chr3.4:98877177-98877196 | MS.gene014321:CDS | 20.0% |
| !!! | TACAATTTTTAGACTTTGTT+TGG | + | chr3.4:98877961-98877980 | None:intergenic | 20.0% |
| ! | AACTAAGTCAACACAATTAA+AGG | + | chr3.4:98876774-98876793 | None:intergenic | 25.0% |
| ! | ATAGATCAAAGATGATTAAG+TGG | + | chr3.4:98877643-98877662 | None:intergenic | 25.0% |
| ! | ATATTTCCAGGAATTGTTAA+GGG | - | chr3.4:98877661-98877680 | MS.gene014321:intron | 25.0% |
| ! | ATCAAACATCATATGTTTGT+TGG | - | chr3.4:98877728-98877747 | MS.gene014321:CDS | 25.0% |
| ! | ATGGATAAGAAGTTACAATA+AGG | - | chr3.4:98877827-98877846 | MS.gene014321:intron | 25.0% |
| ! | ATGTAACTAGAAAATAACCT+TGG | + | chr3.4:98876049-98876068 | None:intergenic | 25.0% |
| ! | ATTCAAACATCATCAATTGT+AGG | - | chr3.4:98877047-98877066 | MS.gene014321:intron | 25.0% |
| ! | GATGTTCTATTTGTATATAC+TGG | + | chr3.4:98878466-98878485 | None:intergenic | 25.0% |
| ! | TAAAAATTGTATTTGTGCAG+AGG | - | chr3.4:98877970-98877989 | MS.gene014321:CDS | 25.0% |
| ! | TATATTTCCAGGAATTGTTA+AGG | - | chr3.4:98877660-98877679 | MS.gene014321:intron | 25.0% |
| ! | TCTATTTGTATATACTGGAA+TGG | + | chr3.4:98878461-98878480 | None:intergenic | 25.0% |
| ! | TTGAAATATGATTCTATGCT+TGG | - | chr3.4:98876887-98876906 | MS.gene014321:intron | 25.0% |
| ! | TTGCAATTAAGTAACATCTT+TGG | - | chr3.4:98876506-98876525 | MS.gene014321:CDS | 25.0% |
| !! | AACAACATTTTCTGAATGAA+GGG | + | chr3.4:98876385-98876404 | None:intergenic | 25.0% |
| !! | ATGATGTTTGATAATATACC+TGG | + | chr3.4:98877720-98877739 | None:intergenic | 25.0% |
| !! | ATGCTTGTATTTTCATTTTG+TGG | + | chr3.4:98877073-98877092 | None:intergenic | 25.0% |
| !! | ATGGTTTGCAAATTATAATC+AGG | - | chr3.4:98876564-98876583 | MS.gene014321:CDS | 25.0% |
| !! | ATTAGTTTCACTGAATTGAA+TGG | - | chr3.4:98876814-98876833 | MS.gene014321:intron | 25.0% |
| !! | GTTATTGATAGTTACAATGT+TGG | - | chr3.4:98878797-98878816 | MS.gene014321:intron | 25.0% |
| !!! | TTTAAGAGAATGGCTTTAAA+AGG | + | chr3.4:98876461-98876480 | None:intergenic | 25.0% |
| AAGTTAAAGGTAGCAATCAA+TGG | - | chr3.4:98876625-98876644 | MS.gene014321:CDS | 30.0% | |
| AATGAGACTATTACAGTTGA+TGG | - | chr3.4:98876941-98876960 | MS.gene014321:intron | 30.0% | |
| ATAAACTTTGCATTCCTCAT+CGG | + | chr3.4:98878936-98878955 | None:intergenic | 30.0% | |
| ATGAAACAAAGCAATCATGA+AGG | + | chr3.4:98875870-98875889 | None:intergenic | 30.0% | |
| ATTGATTGCTACCTTTAACT+TGG | + | chr3.4:98876626-98876645 | None:intergenic | 30.0% | |
| CATCTTTGATCTATATTTCC+AGG | - | chr3.4:98877649-98877668 | MS.gene014321:intron | 30.0% | |
| CTTCATTCAGAAAATGTTGT+TGG | - | chr3.4:98876384-98876403 | MS.gene014321:CDS | 30.0% | |
| GCAAAGTAAAGTGAAGTATA+AGG | + | chr3.4:98875909-98875928 | None:intergenic | 30.0% | |
| GTCAATAGTTGAAGAAACAT+CGG | + | chr3.4:98878303-98878322 | None:intergenic | 30.0% | |
| GTTTATCCTAAAAAGATGCA+TGG | + | chr3.4:98878488-98878507 | None:intergenic | 30.0% | |
| TAAGTAACATCTTTGGTTAC+TGG | - | chr3.4:98876513-98876532 | MS.gene014321:CDS | 30.0% | |
| TGAAAATACAAGCATGTGAT+TGG | - | chr3.4:98877078-98877097 | MS.gene014321:intron | 30.0% | |
| TGACACGAAACTTCATTATA+TGG | + | chr3.4:98878413-98878432 | None:intergenic | 30.0% | |
| TGCTACATATAAAAGAAGGA+AGG | + | chr3.4:98876104-98876123 | None:intergenic | 30.0% | |
| TGTTGACAATGGTAATAGTT+TGG | - | chr3.4:98876179-98876198 | MS.gene014321:intron | 30.0% | |
| TTGAATGTAATCACATGTGT+CGG | - | chr3.4:98876214-98876233 | MS.gene014321:intron | 30.0% | |
| ! | ACTTCTTATCCATTTTCAGT+TGG | + | chr3.4:98877820-98877839 | None:intergenic | 30.0% |
| ! | CAACAACATTTTCTGAATGA+AGG | + | chr3.4:98876386-98876405 | None:intergenic | 30.0% |
| ! | CTTTAAGGGATTTAAGAGAA+TGG | + | chr3.4:98876471-98876490 | None:intergenic | 30.0% |
| !!! | TTGTTTGGCTTGATTTGTTT+TGG | + | chr3.4:98877946-98877965 | None:intergenic | 30.0% |
| AAAGCCTTACCTTATGATGT+CGG | + | chr3.4:98877349-98877368 | None:intergenic | 35.0% | |
| AAGATCCTGGATGAAGAATT+CGG | - | chr3.4:98877544-98877563 | MS.gene014321:intron | 35.0% | |
| AAGATTGACTAGGAAGCTAT+TGG | + | chr3.4:98877797-98877816 | None:intergenic | 35.0% | |
| AAGCACAAGATTTCCATCAA+AGG | - | chr3.4:98875785-98875804 | MS.gene014321:CDS | 35.0% | |
| AAGGTAGCAATCAATGGTTT+CGG | - | chr3.4:98876631-98876650 | MS.gene014321:CDS | 35.0% | |
| ACAACTGAAACATTAGGTGT+TGG | + | chr3.4:98878140-98878159 | None:intergenic | 35.0% | |
| ACACATGTAATCTGAATCGT+CGG | - | chr3.4:98876269-98876288 | MS.gene014321:intron | 35.0% | |
| ACATCCAATACACCTTTCAA+TGG | + | chr3.4:98878242-98878261 | None:intergenic | 35.0% | |
| AGCTGTGATGATAACTTTCT+TGG | + | chr3.4:98877256-98877275 | None:intergenic | 35.0% | |
| AGGTCAACAACTGAAACATT+AGG | + | chr3.4:98878146-98878165 | None:intergenic | 35.0% | |
| ATGGAAATCTTGTGCTTGTA+GGG | + | chr3.4:98875782-98875801 | None:intergenic | 35.0% | |
| CAACACAATTAAAGGAGCAA+TGG | + | chr3.4:98876766-98876785 | None:intergenic | 35.0% | |
| CACATCTAGTAGCAAACAAA+TGG | - | chr3.4:98878849-98878868 | MS.gene014321:intron | 35.0% | |
| GATATTCCAACTTACGTTGT+TGG | - | chr3.4:98877291-98877310 | MS.gene014321:intron | 35.0% | |
| GCAAATTATAATCAGGCCAT+TGG | - | chr3.4:98876571-98876590 | MS.gene014321:CDS | 35.0% | |
| GGTTGCATAACATATTTGCA+TGG | - | chr3.4:98876405-98876424 | MS.gene014321:CDS | 35.0% | |
| GTAATTGTTGTCAATGACAG+TGG | - | chr3.4:98876712-98876731 | MS.gene014321:intron | 35.0% | |
| GTCAATCTTCCAACTGAAAA+TGG | - | chr3.4:98877808-98877827 | MS.gene014321:CDS | 35.0% | |
| TGCTTGGTATGACAATGAAT+GGG | - | chr3.4:98878367-98878386 | MS.gene014321:intron | 35.0% | |
| TGGAATTGACATTGTCATTG+AGG | - | chr3.4:98877021-98877040 | MS.gene014321:intron | 35.0% | |
| TTAAACTGTTTACCTCGTTG+TGG | - | chr3.4:98877374-98877393 | MS.gene014321:CDS | 35.0% | |
| TTGACAACAATTACTTCGAG+TGG | + | chr3.4:98876706-98876725 | None:intergenic | 35.0% | |
| TTGCTTGGTATGACAATGAA+TGG | - | chr3.4:98878366-98878385 | MS.gene014321:intron | 35.0% | |
| TTTACTCCAACAACGTAAGT+TGG | + | chr3.4:98877300-98877319 | None:intergenic | 35.0% | |
| TTTCAGTTGGAAGATTGACT+AGG | + | chr3.4:98877807-98877826 | None:intergenic | 35.0% | |
| ! | GAACATCCATGCATCTTTTT+AGG | - | chr3.4:98878479-98878498 | MS.gene014321:intron | 35.0% |
| ! | TCATCATTTGAGGTCTGTTT+GGG | + | chr3.4:98878721-98878740 | None:intergenic | 35.0% |
| ! | TCCTCTTGTTTCACATATTC+AGG | - | chr3.4:98876853-98876872 | MS.gene014321:intron | 35.0% |
| ! | TGAATTTTTGTTCAGGGAAC+TGG | - | chr3.4:98877183-98877202 | MS.gene014321:intron | 35.0% |
| ! | TGTCAAACAATGACACGTTT+TGG | - | chr3.4:98876237-98876256 | MS.gene014321:intron | 35.0% |
| ! | TTCATCATTTGAGGTCTGTT+TGG | + | chr3.4:98878722-98878741 | None:intergenic | 35.0% |
| !! | TATTGACTCTTCCTTGACTA+TGG | - | chr3.4:98878316-98878335 | MS.gene014321:intron | 35.0% |
| !! | TGTGTTGACTTAGTTTGCTT+TGG | - | chr3.4:98876779-98876798 | MS.gene014321:intron | 35.0% |
| !!! | AAGCTTGTTTTACTTATGCG+TGG | - | chr3.4:98877757-98877776 | MS.gene014321:CDS | 35.0% |
| AACATCTTTGGTTACTGGAC+TGG | - | chr3.4:98876518-98876537 | MS.gene014321:CDS | 40.0% | |
| AGAAGACTCTCTAGCATTAC+TGG | + | chr3.4:98875995-98876014 | None:intergenic | 40.0% | |
| AGAGACTGTTGCCAAGTTAA+AGG | - | chr3.4:98876612-98876631 | MS.gene014321:CDS | 40.0% | |
| ATGAAGTAGCCGACATCATA+AGG | - | chr3.4:98877337-98877356 | MS.gene014321:intron | 40.0% | |
| ATGACAATGAATGGGGTTAC+AGG | - | chr3.4:98878375-98878394 | MS.gene014321:intron | 40.0% | |
| ATGGTTCCCTTAACAATTCC+TGG | + | chr3.4:98877670-98877689 | None:intergenic | 40.0% | |
| ATTGTTGTCAATGACAGTGG+TGG | - | chr3.4:98876715-98876734 | MS.gene014321:intron | 40.0% | |
| CAAATGATGAAAGTTGCTGC+TGG | - | chr3.4:98878731-98878750 | MS.gene014321:CDS | 40.0% | |
| GAAGAAATTTCCTGAGATGC+TGG | - | chr3.4:98876662-98876681 | MS.gene014321:CDS | 40.0% | |
| GATGGAAATCTTGTGCTTGT+AGG | + | chr3.4:98875783-98875802 | None:intergenic | 40.0% | |
| GATGTTGAGGTTGAGAACAA+GGG | - | chr3.4:98877396-98877415 | MS.gene014321:CDS | 40.0% | |
| GCAGCAACTTTCATCATTTG+AGG | + | chr3.4:98878731-98878750 | None:intergenic | 40.0% | |
| GCCTGAATATGTGAAACAAG+AGG | + | chr3.4:98876857-98876876 | None:intergenic | 40.0% | |
| GCTTGGTATGACAATGAATG+GGG | - | chr3.4:98878368-98878387 | MS.gene014321:intron | 40.0% | |
| GGAGTAAATGAGCAAGACTA+CGG | - | chr3.4:98877312-98877331 | MS.gene014321:intron | 40.0% | |
| TATGGTCATGGGAGATGATA+TGG | - | chr3.4:98878334-98878353 | MS.gene014321:intron | 40.0% | |
| TCATCCAGGATCTTCACAAA+GGG | + | chr3.4:98877538-98877557 | None:intergenic | 40.0% | |
| TCTTCCTTGACTATGGTCAT+GGG | - | chr3.4:98878323-98878342 | MS.gene014321:intron | 40.0% | |
| TGATTTCAGTCAAAGAGTGG+TGG | - | chr3.4:98878820-98878839 | MS.gene014321:intron | 40.0% | |
| TGGTGATTTCAGTCAAAGAG+TGG | - | chr3.4:98878817-98878836 | MS.gene014321:intron | 40.0% | |
| TGTAGAAGCTAAAGCTGCAT+GGG | + | chr3.4:98875754-98875773 | None:intergenic | 40.0% | |
| TGTCAATGCAGCATTCAGAA+AGG | - | chr3.4:98878205-98878224 | MS.gene014321:intron | 40.0% | |
| TGTTTCAGTTGTTGACCTTG+TGG | - | chr3.4:98878148-98878167 | MS.gene014321:intron | 40.0% | |
| TGTTTGTGTCAGTGCTTCAT+CGG | + | chr3.4:98876141-98876160 | None:intergenic | 40.0% | |
| TTCATCCAGGATCTTCACAA+AGG | + | chr3.4:98877539-98877558 | None:intergenic | 40.0% | |
| TTGTAGAAGCTAAAGCTGCA+TGG | + | chr3.4:98875755-98875774 | None:intergenic | 40.0% | |
| ! | TTATGATGTCGGCTACTTCA+TGG | + | chr3.4:98877338-98877357 | None:intergenic | 40.0% |
| !! | TGATTAAGTGGCTTTGAGCT+AGG | + | chr3.4:98877631-98877650 | None:intergenic | 40.0% |
| AAAGAGTGAGAGGCCTTTGA+TGG | + | chr3.4:98875801-98875820 | None:intergenic | 45.0% | |
| AAAGGGAGCAAGACAGTTTG+TGG | + | chr3.4:98877521-98877540 | None:intergenic | 45.0% | |
| AATTTCCTGAGATGCTGGCA+CGG | - | chr3.4:98876667-98876686 | MS.gene014321:CDS | 45.0% | |
| ACAACCACACATTCCTACAC+AGG | - | chr3.4:98877691-98877710 | MS.gene014321:CDS | 45.0% | |
| ACTTTGCATTCCTCATCGGA+CGG | + | chr3.4:98878932-98878951 | None:intergenic | 45.0% | |
| ATATACCTGGTCTCCTGTGT+AGG | + | chr3.4:98877707-98877726 | None:intergenic | 45.0% | |
| ATATGGTCAAGGTGGTTGCT+TGG | - | chr3.4:98878351-98878370 | MS.gene014321:intron | 45.0% | |
| ATCAATGGTTTCGGACGCAT+TGG | - | chr3.4:98876640-98876659 | MS.gene014321:CDS | 45.0% | |
| ATCATCACAGCTCCTGCAAA+GGG | - | chr3.4:98877264-98877283 | MS.gene014321:intron | 45.0% | |
| ATCTCCCATGACCATAGTCA+AGG | + | chr3.4:98878330-98878349 | None:intergenic | 45.0% | |
| ATTGGATCAACTGCTGTGAG+GGG | - | chr3.4:98876589-98876608 | MS.gene014321:CDS | 45.0% | |
| CAAAGGTTTCACTCTCTCTG+TGG | - | chr3.4:98875838-98875857 | MS.gene014321:CDS | 45.0% | |
| CAACAAGTCTGCGTCGTATT+TGG | + | chr3.4:98876164-98876183 | None:intergenic | 45.0% | |
| CAGAGAGAGTGAAACCTTTG+AGG | + | chr3.4:98875838-98875857 | None:intergenic | 45.0% | |
| CATGGGAGATGATATGGTCA+AGG | - | chr3.4:98878340-98878359 | MS.gene014321:intron | 45.0% | |
| CATTGGATCAACTGCTGTGA+GGG | - | chr3.4:98876588-98876607 | MS.gene014321:CDS | 45.0% | |
| CTAGTAGCAAACAAATGGCC+AGG | - | chr3.4:98878854-98878873 | MS.gene014321:intron | 45.0% | |
| CTCTCTAGCATTACTGGCAT+AGG | + | chr3.4:98875989-98876008 | None:intergenic | 45.0% | |
| CTCTTCCTTGACTATGGTCA+TGG | - | chr3.4:98878322-98878341 | MS.gene014321:intron | 45.0% | |
| CTGCTAGAGACAACAAGGAT+GGG | + | chr3.4:98876971-98876990 | None:intergenic | 45.0% | |
| GCTTACCGAATTCTTCATCC+AGG | + | chr3.4:98877552-98877571 | None:intergenic | 45.0% | |
| GGATCCTCTTAAGCTTCCTT+GGG | - | chr3.4:98876991-98877010 | MS.gene014321:CDS | 45.0% | |
| GGATGTTGAGGTTGAGAACA+AGG | - | chr3.4:98877395-98877414 | MS.gene014321:CDS | 45.0% | |
| GTAGCCGACATCATAAGGTA+AGG | - | chr3.4:98877342-98877361 | MS.gene014321:intron | 45.0% | |
| GTAGGAATGTGTGGTTGTCA+TGG | + | chr3.4:98877689-98877708 | None:intergenic | 45.0% | |
| GTGGTGAATGTTGCGAAGAA+GGG | - | chr3.4:98878167-98878186 | MS.gene014321:intron | 45.0% | |
| TAACTTTCTTGGCACCTGCT+TGG | + | chr3.4:98877245-98877264 | None:intergenic | 45.0% | |
| TATCATCACAGCTCCTGCAA+AGG | - | chr3.4:98877263-98877282 | MS.gene014321:intron | 45.0% | |
| TCTTCGCAACATTCACCACA+AGG | + | chr3.4:98878166-98878185 | None:intergenic | 45.0% | |
| TGTATTTGTGCAGAGGCTTC+TGG | - | chr3.4:98877977-98877996 | MS.gene014321:CDS | 45.0% | |
| TGTGGTGAATGTTGCGAAGA+AGG | - | chr3.4:98878166-98878185 | MS.gene014321:intron | 45.0% | |
| TTACCTCGTTGTGGATGTTG+AGG | - | chr3.4:98877383-98877402 | MS.gene014321:CDS | 45.0% | |
| TTGAAGAAACATCGGTGCAG+CGG | + | chr3.4:98878295-98878314 | None:intergenic | 45.0% | |
| TTTGCTTGTGCAGAGACTTG+AGG | - | chr3.4:98875924-98875943 | MS.gene014321:intron | 45.0% | |
| ! | CATCCTTGTTGTCTCTAGCA+GGG | - | chr3.4:98876970-98876989 | MS.gene014321:intron | 45.0% |
| ! | GGGACCATTGAAAGGTGTAT+TGG | - | chr3.4:98878235-98878254 | MS.gene014321:intron | 45.0% |
| !! | ACCTTTGAGGCACATTGAGT+TGG | + | chr3.4:98875825-98875844 | None:intergenic | 45.0% |
| !! | ATTAGGTGTTGGCACACGAA+GGG | + | chr3.4:98878129-98878148 | None:intergenic | 45.0% |
| !! | CAGTCAAAGAGTGGTGGATT+TGG | - | chr3.4:98878826-98878845 | MS.gene014321:intron | 45.0% |
| !! | CCTTTGAGGCACATTGAGTT+GGG | + | chr3.4:98875824-98875843 | None:intergenic | 45.0% |
| !! | TTGAGTTGGGAAAGAGTGAG+AGG | + | chr3.4:98875811-98875830 | None:intergenic | 45.0% |
| ACATTCCTACACAGGAGACC+AGG | - | chr3.4:98877699-98877718 | MS.gene014321:CDS | 50.0% | |
| ACCTGCTTGGATGTGCTTTC+CGG | + | chr3.4:98877232-98877251 | None:intergenic | 50.0% | |
| AGAAGCTAAAGCTGCATGGG+TGG | + | chr3.4:98875751-98875770 | None:intergenic | 50.0% | |
| AGCATTCAGAAAGGCAGCTG+AGG | - | chr3.4:98878214-98878233 | MS.gene014321:intron | 50.0% | |
| CAACCTCAACATCCACAACG+AGG | + | chr3.4:98877389-98877408 | None:intergenic | 50.0% | |
| CAGCTCAAGGGAAAGCTCAA+CGG | - | chr3.4:98878098-98878117 | MS.gene014321:CDS | 50.0% | |
| CCATTGGATCAACTGCTGTG+AGG | - | chr3.4:98876587-98876606 | MS.gene014321:CDS | 50.0% | |
| CCCAACTCAATGTGCCTCAA+AGG | - | chr3.4:98875821-98875840 | MS.gene014321:CDS | 50.0% | |
| CCTCACAGCAGTTGATCCAA+TGG | + | chr3.4:98876590-98876609 | None:intergenic | 50.0% | |
| CCTGCTAGAGACAACAAGGA+TGG | + | chr3.4:98876972-98876991 | None:intergenic | 50.0% | |
| CGGAAGTCAACAGACACAAG+TGG | + | chr3.4:98878275-98878294 | None:intergenic | 50.0% | |
| CTTGAGGTGGCTGAATTCAG+TGG | - | chr3.4:98875940-98875959 | MS.gene014321:intron | 50.0% | |
| CTTTGCATTCCTCATCGGAC+GGG | + | chr3.4:98878931-98878950 | None:intergenic | 50.0% | |
| GATCCCTGCTAGAGACAACA+AGG | + | chr3.4:98876976-98876995 | None:intergenic | 50.0% | |
| GCATTCAGAAAGGCAGCTGA+GGG | - | chr3.4:98878215-98878234 | MS.gene014321:intron | 50.0% | |
| GCTTCTGGATGCTTCACACA+GGG | - | chr3.4:98877992-98878011 | MS.gene014321:CDS | 50.0% | |
| GGGAGATGATATGGTCAAGG+TGG | - | chr3.4:98878343-98878362 | MS.gene014321:intron | 50.0% | |
| GGGATCCTCTTAAGCTTCCT+TGG | - | chr3.4:98876990-98877009 | MS.gene014321:CDS | 50.0% | |
| GTCTCACAGAAGTCCTCCAA+TGG | + | chr3.4:98878905-98878924 | None:intergenic | 50.0% | |
| GTCTCCTGTGTAGGAATGTG+TGG | + | chr3.4:98877698-98877717 | None:intergenic | 50.0% | |
| TCAATTCCAAGCTCAGCCCA+AGG | + | chr3.4:98877010-98877029 | None:intergenic | 50.0% | |
| TCAGCCCAAGGAAGCTTAAG+AGG | + | chr3.4:98876998-98877017 | None:intergenic | 50.0% | |
| TGCTCCCTTTGTGAAGATCC+TGG | - | chr3.4:98877531-98877550 | MS.gene014321:intron | 50.0% | |
| TTGAGCTTTCCCTTGAGCTG+TGG | + | chr3.4:98878098-98878117 | None:intergenic | 50.0% | |
| ! | CCATCCTTGTTGTCTCTAGC+AGG | - | chr3.4:98876969-98876988 | MS.gene014321:intron | 50.0% |
| ! | GGAACTGGAGTGTTTGTGGA+TGG | - | chr3.4:98877198-98877217 | MS.gene014321:intron | 50.0% |
| ! | TCAGGGAACTGGAGTGTTTG+TGG | - | chr3.4:98877194-98877213 | MS.gene014321:intron | 50.0% |
| !! | CATTAGGTGTTGGCACACGA+AGG | + | chr3.4:98878130-98878149 | None:intergenic | 50.0% |
| !! | CGACGCAGACTTGTTGACAA+TGG | - | chr3.4:98876168-98876187 | MS.gene014321:intron | 50.0% |
| AACATTGTCCCCACCAGCAC+AGG | - | chr3.4:98878044-98878063 | MS.gene014321:CDS | 55.0% | |
| AAGCTTCCTTGGGCTGAGCT+TGG | - | chr3.4:98877001-98877020 | MS.gene014321:CDS | 55.0% | |
| AATGTTCAGTGCTGCAGCCC+TGG | + | chr3.4:98878030-98878049 | None:intergenic | 55.0% | |
| ACAGGGACTTGAGAAGAGCC+AGG | - | chr3.4:98878009-98878028 | MS.gene014321:CDS | 55.0% | |
| AGCAGGGAGTGGAGATCCAT+TGG | - | chr3.4:98878886-98878905 | MS.gene014321:CDS | 55.0% | |
| AGCTGCTCAACTCGCAACCA+AGG | - | chr3.4:98876029-98876048 | MS.gene014321:intron | 55.0% | |
| AGGGAGTGGAGATCCATTGG+AGG | - | chr3.4:98878889-98878908 | MS.gene014321:CDS | 55.0% | |
| ATCTCCACTCCCTGCTTGAG+CGG | + | chr3.4:98878882-98878901 | None:intergenic | 55.0% | |
| CAGCACTAGAGAGACAGCCT+TGG | + | chr3.4:98878075-98878094 | None:intergenic | 55.0% | |
| CAGGGACTTGAGAAGAGCCA+GGG | - | chr3.4:98878010-98878029 | MS.gene014321:CDS | 55.0% | |
| CTAGTGCTGCCACAGCTCAA+GGG | - | chr3.4:98878086-98878105 | MS.gene014321:CDS | 55.0% | |
| GCAGCTGAGGGACCATTGAA+AGG | - | chr3.4:98878227-98878246 | MS.gene014321:intron | 55.0% | |
| GCTTGTGCAGAGACTTGAGG+TGG | - | chr3.4:98875927-98875946 | MS.gene014321:intron | 55.0% | |
| GGAATATCAGCGCCCTTTGC+AGG | + | chr3.4:98877279-98877298 | None:intergenic | 55.0% | |
| GGCTTCTGGATGCTTCACAC+AGG | - | chr3.4:98877991-98878010 | MS.gene014321:CDS | 55.0% | |
| TCTAGTGCTGCCACAGCTCA+AGG | - | chr3.4:98878085-98878104 | MS.gene014321:CDS | 55.0% | |
| TGAGACAAACCCGTCCGATG+AGG | - | chr3.4:98878919-98878938 | MS.gene014321:CDS | 55.0% | |
| GAGATGCTGGCACGGTCGAA+AGG | - | chr3.4:98876675-98876694 | MS.gene014321:CDS | 60.0% | |
| GGATGTGCTTTCCGGCTCCA+GGG | + | chr3.4:98877224-98877243 | None:intergenic | 60.0% | |
| TGGATGTGCTTTCCGGCTCC+AGG | + | chr3.4:98877225-98877244 | None:intergenic | 60.0% | |
| TTCGACCGTGCCAGCATCTC+AGG | + | chr3.4:98876675-98876694 | None:intergenic | 60.0% | |
| TTTGTGGATGGCCCTGGAGC+CGG | - | chr3.4:98877210-98877229 | MS.gene014321:intron | 60.0% | |
| ! | GCCGGAAAGCACATCCAAGC+AGG | - | chr3.4:98877228-98877247 | MS.gene014321:intron | 60.0% |
| ! | GGAGTGTTTGTGGATGGCCC+TGG | - | chr3.4:98877204-98877223 | MS.gene014321:intron | 60.0% |
| ! | TTGGCTGCTCCTGTGCTGGT+GGG | + | chr3.4:98878056-98878075 | None:intergenic | 60.0% |
| AGCCTTGGCTGCTCCTGTGC+TGG | + | chr3.4:98878060-98878079 | None:intergenic | 65.0% | |
| CACCAGCACAGGAGCAGCCA+AGG | - | chr3.4:98878055-98878074 | MS.gene014321:CDS | 65.0% | |
| CTTGGCTGCTCCTGTGCTGG+TGG | + | chr3.4:98878057-98878076 | None:intergenic | 65.0% | |
| ! | TGGCTGCTCCTGTGCTGGTG+GGG | + | chr3.4:98878055-98878074 | None:intergenic | 65.0% |
| CTCCCTGCTTGAGCGGTGCC+TGG | + | chr3.4:98878875-98878894 | None:intergenic | 70.0% | |
| GGCACCGCTCAAGCAGGGAG+TGG | - | chr3.4:98878875-98878894 | MS.gene014321:CDS | 70.0% | |
| ! | GGCCAGGCACCGCTCAAGCA+GGG | - | chr3.4:98878870-98878889 | MS.gene014321:CDS | 70.0% |
| ! | TGGCCAGGCACCGCTCAAGC+AGG | - | chr3.4:98878869-98878888 | MS.gene014321:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 98875744 | 98878961 | 98875744 | ID=MS.gene014321 |
| chr3.4 | mRNA | 98875744 | 98878961 | 98875744 | ID=MS.gene014321.t1;Parent=MS.gene014321 |
| chr3.4 | exon | 98878863 | 98878961 | 98878863 | ID=MS.gene014321.t1.exon1;Parent=MS.gene014321.t1 |
| chr3.4 | CDS | 98878863 | 98878961 | 98878863 | ID=cds.MS.gene014321.t1;Parent=MS.gene014321.t1 |
| chr3.4 | exon | 98878655 | 98878768 | 98878655 | ID=MS.gene014321.t1.exon2;Parent=MS.gene014321.t1 |
| chr3.4 | CDS | 98878655 | 98878768 | 98878655 | ID=cds.MS.gene014321.t1;Parent=MS.gene014321.t1 |
| chr3.4 | exon | 98877958 | 98878119 | 98877958 | ID=MS.gene014321.t1.exon3;Parent=MS.gene014321.t1 |
| chr3.4 | CDS | 98877958 | 98878119 | 98877958 | ID=cds.MS.gene014321.t1;Parent=MS.gene014321.t1 |
| chr3.4 | exon | 98877663 | 98877830 | 98877663 | ID=MS.gene014321.t1.exon4;Parent=MS.gene014321.t1 |
| chr3.4 | CDS | 98877663 | 98877830 | 98877663 | ID=cds.MS.gene014321.t1;Parent=MS.gene014321.t1 |
| chr3.4 | exon | 98877347 | 98877507 | 98877347 | ID=MS.gene014321.t1.exon5;Parent=MS.gene014321.t1 |
| chr3.4 | CDS | 98877347 | 98877507 | 98877347 | ID=cds.MS.gene014321.t1;Parent=MS.gene014321.t1 |
| chr3.4 | exon | 98877140 | 98877201 | 98877140 | ID=MS.gene014321.t1.exon6;Parent=MS.gene014321.t1 |
| chr3.4 | CDS | 98877140 | 98877201 | 98877140 | ID=cds.MS.gene014321.t1;Parent=MS.gene014321.t1 |
| chr3.4 | exon | 98876985 | 98877034 | 98876985 | ID=MS.gene014321.t1.exon7;Parent=MS.gene014321.t1 |
| chr3.4 | CDS | 98876985 | 98877034 | 98876985 | ID=cds.MS.gene014321.t1;Parent=MS.gene014321.t1 |
| chr3.4 | exon | 98876309 | 98876715 | 98876309 | ID=MS.gene014321.t1.exon8;Parent=MS.gene014321.t1 |
| chr3.4 | CDS | 98876309 | 98876715 | 98876309 | ID=cds.MS.gene014321.t1;Parent=MS.gene014321.t1 |
| chr3.4 | exon | 98875744 | 98875876 | 98875744 | ID=MS.gene014321.t1.exon9;Parent=MS.gene014321.t1 |
| chr3.4 | CDS | 98875744 | 98875876 | 98875744 | ID=cds.MS.gene014321.t1;Parent=MS.gene014321.t1 |
| Gene Sequence |
| Protein sequence |
