AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050457


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050457.t1 MTR_3g051690 94.626 428 17 2 1 422 32 459 0.0 843
MS.gene050457.t1 MTR_5g008010 90.398 427 32 4 1 422 32 454 0.0 797
MS.gene050457.t1 MTR_7g106870 74.825 429 97 6 1 422 33 457 0.0 668
MS.gene050457.t1 MTR_7g451830 67.366 429 116 8 2 422 19 431 0.0 566
MS.gene050457.t1 MTR_7g047640 67.366 429 116 8 2 422 19 431 0.0 566
MS.gene050457.t1 MTR_7g057540 64.884 430 125 8 1 422 15 426 0.0 534
MS.gene050457.t1 MTR_7g055590 64.802 429 125 8 1 421 15 425 0.0 531
MS.gene050457.t1 MTR_7g053100 62.005 429 139 7 1 422 25 436 0.0 518
MS.gene050457.t1 MTR_7g034625 70.755 318 86 2 97 407 13 330 1.81e-166 471
MS.gene050457.t1 MTR_2g100540 50.580 431 158 12 2 422 12 397 1.48e-127 374
MS.gene050457.t1 MTR_2g100460 56.560 343 135 5 80 420 52 382 1.63e-126 371
MS.gene050457.t1 MTR_2g060710 44.282 411 207 8 2 398 26 428 2.48e-119 355
MS.gene050457.t1 MTR_3g067940 44.286 420 212 7 2 409 57 466 3.97e-116 348
MS.gene050457.t1 MTR_4g102510 43.198 419 206 7 2 401 51 456 1.04e-110 334
MS.gene050457.t1 MTR_4g415070 58.621 58 24 0 347 404 57 114 1.90e-16 80.1
MS.gene050457.t1 MTR_2g012630 27.397 219 148 8 127 342 35 245 2.76e-15 78.6
MS.gene050457.t1 MTR_1g054300 26.263 297 161 10 147 396 114 399 2.99e-15 77.8
MS.gene050457.t1 MTR_1g054300 26.119 268 170 11 134 394 235 481 2.20e-14 75.1
MS.gene050457.t1 MTR_2g012630 27.397 219 148 8 127 342 35 245 3.23e-15 78.6
MS.gene050457.t1 MTR_6g004040 28.326 233 153 10 113 339 19 243 6.90e-15 77.4
MS.gene050457.t1 MTR_5g016370 23.693 287 163 8 116 394 312 550 1.21e-14 76.3
MS.gene050457.t1 MTR_5g016350 22.997 287 179 7 110 395 294 539 5.78e-13 70.9
MS.gene050457.t1 MTR_5g016350 22.997 287 179 7 110 395 230 475 6.91e-13 70.5
MS.gene050457.t1 MTR_4g095058 24.382 283 168 11 116 395 295 534 5.37e-12 68.2
MS.gene050457.t1 MTR_4g095058 24.382 283 168 11 116 395 293 532 6.46e-12 67.8
MS.gene050457.t1 MTR_3g106080 24.351 308 191 10 128 403 326 623 9.18e-12 67.4
MS.gene050457.t1 MTR_7g086360 23.415 205 150 4 193 395 53 252 2.42e-11 65.1
MS.gene050457.t1 MTR_1g049000 39.362 94 47 3 173 257 8 100 4.80e-11 62.0
MS.gene050457.t1 MTR_4g119620 22.581 248 177 7 155 394 81 321 5.36e-11 63.9
MS.gene050457.t1 MTR_5g022690 27.011 174 120 5 139 310 266 434 8.50e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050457.t1 AT4G33270 77.283 427 89 4 1 422 34 457 0.0 687
MS.gene050457.t1 AT4G33260 77.283 427 89 4 1 422 24 447 0.0 668
MS.gene050457.t1 AT4G33260 75.122 410 94 4 1 405 24 430 0.0 635
MS.gene050457.t1 AT5G27570 68.531 429 120 6 1 422 30 450 0.0 590
MS.gene050457.t1 AT5G27080 67.133 429 126 6 1 422 22 442 0.0 580
MS.gene050457.t1 AT5G26900 66.589 428 129 5 1 422 25 444 0.0 572
MS.gene050457.t1 AT5G27945 61.456 371 123 5 68 422 62 428 1.21e-156 449
MS.gene050457.t1 AT4G22910 42.822 411 216 7 2 401 62 464 8.70e-113 339
MS.gene050457.t1 AT5G13840 51.475 305 145 3 100 404 164 465 1.56e-110 333
MS.gene050457.t1 AT5G13840 51.475 305 145 3 100 404 164 465 1.56e-110 333
MS.gene050457.t1 AT4G11920 42.118 425 212 8 2 407 53 462 1.91e-110 333
MS.gene050457.t1 AT1G11160 28.155 206 131 7 119 313 16 215 4.47e-16 81.3
MS.gene050457.t1 AT1G11160 28.155 206 131 7 119 313 16 215 4.67e-16 81.3
MS.gene050457.t1 AT1G11160 28.155 206 131 7 119 313 16 215 5.53e-16 80.9
MS.gene050457.t1 AT5G08390 29.060 234 136 10 109 339 37 243 1.16e-15 79.7
MS.gene050457.t1 AT1G11160 30.247 162 105 6 154 313 18 173 6.14e-15 77.8
MS.gene050457.t1 AT1G61210 26.339 224 142 8 111 319 6 221 1.68e-14 76.3
MS.gene050457.t1 AT1G61210 26.126 222 145 8 111 319 6 221 1.81e-14 76.3
MS.gene050457.t1 AT1G61210 26.339 224 142 8 111 319 6 221 1.95e-14 76.3
MS.gene050457.t1 AT5G52820 28.226 248 154 12 155 396 244 473 4.13e-14 74.3
MS.gene050457.t1 AT5G23430 28.774 212 138 9 113 319 19 222 1.64e-13 73.2
MS.gene050457.t1 AT5G23430 28.774 212 138 9 113 319 19 222 1.64e-13 73.2
MS.gene050457.t1 AT5G23430 28.774 212 138 9 113 319 19 222 1.79e-13 72.8
MS.gene050457.t1 AT5G25150 25.749 334 209 12 104 409 305 627 3.96e-13 71.6
MS.gene050457.t1 AT5G25150 25.749 334 209 12 104 409 305 627 4.70e-13 71.6
MS.gene050457.t1 AT2G32700 25.610 246 163 11 155 394 574 805 5.98e-13 71.2
MS.gene050457.t1 AT2G32700 25.610 246 163 11 155 394 553 784 6.06e-13 71.2
MS.gene050457.t1 AT2G32700 25.610 246 163 11 155 394 555 786 6.29e-13 71.2
MS.gene050457.t1 AT2G32700 25.610 246 163 11 155 394 555 786 6.29e-13 71.2
MS.gene050457.t1 AT2G32700 25.610 246 163 11 155 394 555 786 6.29e-13 71.2
MS.gene050457.t1 AT2G32700 25.610 246 163 11 155 394 555 786 6.29e-13 71.2
MS.gene050457.t1 AT2G32700 25.610 246 163 11 155 394 555 786 6.29e-13 71.2
MS.gene050457.t1 AT5G67320 25.000 284 165 12 116 395 330 569 1.94e-12 69.3
MS.gene050457.t1 AT3G49660 23.600 250 177 8 151 394 71 312 3.93e-12 67.4
MS.gene050457.t1 AT5G13480 31.319 182 115 7 131 309 218 392 1.02e-11 67.4
MS.gene050457.t1 AT5G13480 27.391 230 148 10 155 377 114 331 1.74e-11 66.6
MS.gene050457.t1 AT2G33340 26.042 192 134 5 207 395 236 422 1.11e-11 67.0
MS.gene050457.t1 AT2G33340 26.042 192 134 5 207 395 236 422 1.11e-11 67.0
MS.gene050457.t1 AT2G41500 25.203 246 134 8 155 398 342 539 1.16e-11 67.0
MS.gene050457.t1 AT2G41500 25.203 246 134 8 155 398 342 539 1.16e-11 67.0
MS.gene050457.t1 AT5G13480 31.319 182 115 7 131 309 241 415 1.17e-11 67.0
MS.gene050457.t1 AT5G13480 27.391 230 148 10 155 377 137 354 1.72e-11 66.6
MS.gene050457.t1 AT5G13480 31.319 182 115 7 131 309 218 392 1.22e-11 67.0
MS.gene050457.t1 AT5G13480 27.391 230 148 10 155 377 114 331 2.12e-11 66.2
MS.gene050457.t1 AT1G04510 25.116 215 152 5 207 417 236 445 1.34e-11 66.6
MS.gene050457.t1 AT2G33340 26.042 192 134 5 207 395 236 422 1.37e-11 66.6
MS.gene050457.t1 AT1G04510 25.116 215 152 5 207 417 236 445 1.55e-11 66.6
MS.gene050457.t1 AT5G13480 31.319 182 115 7 131 309 230 404 1.57e-11 66.6
MS.gene050457.t1 AT5G13480 27.391 230 148 10 155 377 126 343 2.41e-11 66.2
MS.gene050457.t1 AT4G02730 26.852 216 145 9 185 395 34 241 3.89e-11 64.3
MS.gene050457.t1 AT5G56130 23.786 206 113 5 232 395 16 219 7.10e-11 63.5

Find 125 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGATGAAACCTTGAGGTTT+TGG 0.193519 3.2:-44256059 MS.gene050457:CDS
TGACTATTACCTCAATTTAC+TGG 0.257532 3.2:-44257000 MS.gene050457:CDS
GTTGCCACTGTCCAACCATC+TGG 0.273358 3.2:+44256090 None:intergenic
AACGGCTCAGCTCTTGCTTT+TGG 0.277205 3.2:+44255997 None:intergenic
TTACCTCAATTTACTGGATT+GGG 0.283267 3.2:-44256994 MS.gene050457:CDS
AATGTTCTTGCAATTGGATT+AGG 0.295419 3.2:-44256963 MS.gene050457:CDS
CTCCTTCCAGAGAAGCTTAC+AGG 0.301895 3.2:-44257675 MS.gene050457:CDS
AGCGCCAATGTTCTTGCAAT+TGG 0.327966 3.2:-44256969 MS.gene050457:CDS
GTTCTTGAAAGCTAGAATTC+TGG 0.331154 3.2:+44257618 None:intergenic
GCAGACTTCTGAGAGGATAT+TGG 0.341248 3.2:-44257042 MS.gene050457:intron
GGATTGAAATGGTCGGCTTC+TGG 0.343844 3.2:-44256498 MS.gene050457:CDS
ATGATAATCAACTTTACATC+TGG 0.350065 3.2:-44256452 MS.gene050457:CDS
GCGATGAAACCATCAAGTTT+TGG 0.364930 3.2:-44256314 MS.gene050457:CDS
ATTACCTCAATTTACTGGAT+TGG 0.371678 3.2:-44256995 MS.gene050457:CDS
TAGCTTCCTGTAAGCTTCTC+TGG 0.375997 3.2:+44257669 None:intergenic
TCTCATTCTTGTTCCACAAC+AGG 0.376647 3.2:+44256235 None:intergenic
GCTCCTGATGGCCGTCATAT+TGG 0.389395 3.2:-44256846 MS.gene050457:CDS
ATTTCAATCCGCAAACTTCT+CGG 0.394694 3.2:+44256511 None:intergenic
AATAATTCGCCGGGGCTTGA+TGG 0.396021 3.2:+44257522 None:intergenic
CCCTATCACATCTGTAAGTT+GGG 0.396604 3.2:-44256868 MS.gene050457:CDS
TCTGCCATCTTCACCATTGA+AGG 0.397901 3.2:+44256156 None:intergenic
CTCAGTTGACACTGGGTCTC+AGG 0.408962 3.2:-44256265 MS.gene050457:CDS
TAGGAAACACATTGTATTTG+TGG 0.412235 3.2:-44256944 MS.gene050457:CDS
CAAGGGAATTTACTAGCTAC+TGG 0.417964 3.2:-44256348 MS.gene050457:CDS
GCCCTATCACATCTGTAAGT+TGG 0.420766 3.2:-44256869 MS.gene050457:CDS
GAGAAGTTTGCGGATTGAAA+TGG 0.425267 3.2:-44256509 MS.gene050457:CDS
CTCAGGTATGTTCCCTGTTG+TGG 0.426699 3.2:-44256248 MS.gene050457:CDS
TAATAGTCATCCACAATGTC+TGG 0.428065 3.2:+44257014 None:intergenic
CTTGCTTGGTGTCCTTTCCA+AGG 0.428743 3.2:-44256366 MS.gene050457:CDS
GTGGGTATTCCAAAACTTGA+TGG 0.428833 3.2:+44256305 None:intergenic
TAGGCAGCGAGTAGGGTCTT+TGG 0.428851 3.2:-44256637 MS.gene050457:CDS
CAGAAGCTCTAAACATGAAC+AGG 0.436496 3.2:-44257642 MS.gene050457:CDS
GTCGGCTTCTGGTCTACAAT+TGG 0.444050 3.2:-44256487 MS.gene050457:CDS
AAATCCATAGCTGATCTATT+CGG 0.447023 3.2:+44257766 None:intergenic
GCCCAACTTACAGATGTGAT+AGG 0.450468 3.2:+44256867 None:intergenic
AGGAAACACATTGTATTTGT+GGG 0.452538 3.2:-44256943 MS.gene050457:CDS
CTTCAACAAGGTGGCTTCAC+AGG 0.460645 3.2:-44256419 MS.gene050457:CDS
TTGCTTGGTGTCCTTTCCAA+GGG 0.471233 3.2:-44256365 MS.gene050457:CDS
CACAGAATCAGATAACACTT+TGG 0.480456 3.2:-44256185 MS.gene050457:CDS
TCATGAGAGAAGAAATCAAC+TGG 0.484334 3.2:+44257580 None:intergenic
ACAACTCTGAAGTGCAGCTA+TGG 0.484474 3.2:-44256812 MS.gene050457:CDS
GGATACAGCTTCAGATAGAC+AGG 0.484963 3.2:-44256790 MS.gene050457:intron
ATGCCAATATGACGGCCATC+AGG 0.485428 3.2:+44256843 None:intergenic
CTAGCTACTGGCGGAGGCAG+TGG 0.487153 3.2:-44256336 MS.gene050457:CDS
CACTTCAAGAGTTCTTCATA+TGG 0.487383 3.2:-44256121 MS.gene050457:CDS
TTGATTATCATTCCCTCCAC+TGG 0.491219 3.2:+44256464 None:intergenic
TTGCCACTGTCCAACCATCT+GGG 0.492660 3.2:+44256091 None:intergenic
TGGAAGGAGAGCACACTTGT+GGG 0.493184 3.2:+44257689 None:intergenic
ACTTTGGAAATATCCTTCAA+TGG 0.495344 3.2:-44256169 MS.gene050457:CDS
GATGGCCGTCATATTGGCAT+TGG 0.495923 3.2:-44256840 MS.gene050457:CDS
ATATCCTTCAATGGTGAAGA+TGG 0.498891 3.2:-44256160 MS.gene050457:CDS
CGCACTACATGGTGACTGAA+GGG 0.507766 3.2:-44257735 MS.gene050457:CDS
CTGGAAGGAGAGCACACTTG+TGG 0.508404 3.2:+44257688 None:intergenic
AAGAAATCAACTGGCGGCGT+AGG 0.510142 3.2:+44257589 None:intergenic
ATGCGGCTCAAATGTGAAAA+CGG 0.515552 3.2:+44255979 None:intergenic
GGGCATGACCGAGAAGTTTG+CGG 0.518071 3.2:-44256519 MS.gene050457:CDS
AACAGTAACAAGTTCTGAAG+TGG 0.523430 3.2:+44256905 None:intergenic
CTGCAGTTGAGAACTTTGAA+AGG 0.529944 3.2:-44256666 MS.gene050457:intron
GAACTTTGAAAGGTGGGCAT+AGG 0.530523 3.2:-44256656 MS.gene050457:CDS
AATAACCACATACTCACAAC+CGG 0.531617 3.2:-44256609 MS.gene050457:CDS
TCCCTCCGGTTGTGAGTATG+TGG 0.533027 3.2:+44256604 None:intergenic
GCCCCGGCGAATTATTCCTC+AGG 0.533857 3.2:-44257515 MS.gene050457:intron
CTCATTCTTGTTCCACAACA+GGG 0.537252 3.2:+44256236 None:intergenic
CTGCAGTAAAAGCTCTTGCT+TGG 0.539760 3.2:-44256380 MS.gene050457:CDS
ACACCTGAGGAATAATTCGC+CGG 0.542147 3.2:+44257512 None:intergenic
TGATAATCAACTTTACATCT+GGG 0.543770 3.2:-44256451 MS.gene050457:CDS
TTTCGATTATGCGCACTACA+TGG 0.544215 3.2:-44257746 MS.gene050457:CDS
TGCTTGAACTCAGTTGACAC+TGG 0.544299 3.2:-44256273 MS.gene050457:CDS
GACAGTGGCAACAGCTGCAG+CGG 0.545471 3.2:-44256079 MS.gene050457:CDS
AGGGAGCTACTCAGCTCTCA+TGG 0.545560 3.2:-44256213 MS.gene050457:CDS
TATTTGTGGGATGCATCAAA+CGG 0.551368 3.2:-44256930 MS.gene050457:CDS
AAATCAACTGGCGGCGTAGG+TGG 0.551699 3.2:+44257592 None:intergenic
CAACTCTGAAGTGCAGCTAT+GGG 0.552386 3.2:-44256811 MS.gene050457:CDS
TAATCCAATTGCAAGAACAT+TGG 0.554610 3.2:+44256965 None:intergenic
CTCACAACCGGAGGGATGGA+TGG 0.555824 3.2:-44256597 MS.gene050457:CDS
CATATGGCGCAGAGCCCAGA+TGG 0.555918 3.2:-44256105 MS.gene050457:CDS
GTGGGCATAGGCAGCGAGTA+GGG 0.557831 3.2:-44256644 MS.gene050457:CDS
CACCTGAGGAATAATTCGCC+GGG 0.559324 3.2:+44257513 None:intergenic
AGTTGAGAACTTTGAAAGGT+GGG 0.559397 3.2:-44256662 MS.gene050457:CDS
TGGCGCAGAGCCCAGATGGT+TGG 0.562028 3.2:-44256101 MS.gene050457:CDS
TACCTCAATTTACTGGATTG+GGG 0.562441 3.2:-44256993 MS.gene050457:CDS
GCTAGTAAATTCCCTTGGAA+AGG 0.568517 3.2:+44256354 None:intergenic
GTCTACAATTGGCCAGTGGA+GGG 0.570881 3.2:-44256476 MS.gene050457:CDS
GTGAAGATGGCAGAACTCAA+TGG 0.571074 3.2:-44256147 MS.gene050457:CDS
GCGCACTACATGGTGACTGA+AGG 0.571364 3.2:-44257736 MS.gene050457:CDS
CATACTCACAACCGGAGGGA+TGG 0.571933 3.2:-44256601 MS.gene050457:CDS
CAGTTGAGAACTTTGAAAGG+TGG 0.572101 3.2:-44256663 MS.gene050457:CDS
GGTCTACAATTGGCCAGTGG+AGG 0.575013 3.2:-44256477 MS.gene050457:CDS
GTTACTGTTGATGATGAAGA+TGG 0.576596 3.2:-44256891 MS.gene050457:CDS
TTCCCCAATCCAGTAAATTG+AGG 0.576674 3.2:+44256991 None:intergenic
TTCCTGTAAGCTTCTCTGGA+AGG 0.579286 3.2:+44257673 None:intergenic
ACTGAAGGGGCTAAAGCTAA+AGG 0.581037 3.2:-44257721 MS.gene050457:CDS
AGGGGCTAAAGCTAAAGGTA+AGG 0.581254 3.2:-44257716 MS.gene050457:CDS
TCTGTAAGTTGGGCTCCTGA+TGG 0.584539 3.2:-44256858 MS.gene050457:CDS
CCCAACTTACAGATGTGATA+GGG 0.585245 3.2:+44256868 None:intergenic
AATTCTACCATCCATCCCTC+CGG 0.585408 3.2:+44256590 None:intergenic
AAAAGCATTCCAAAACCTCA+AGG 0.587395 3.2:+44256050 None:intergenic
GGTGGGCATAGGCAGCGAGT+AGG 0.596714 3.2:-44256645 MS.gene050457:CDS
CATACCGAATAGATCAGCTA+TGG 0.601151 3.2:-44257770 MS.gene050457:CDS
AGCGAGTAGGGTCTTTGGCA+TGG 0.601597 3.2:-44256632 MS.gene050457:CDS
ATTGGATGCTCCAGACATTG+TGG 0.612151 3.2:-44257024 MS.gene050457:CDS
AAGATAAAACCATCAAGCCC+CGG 0.617625 3.2:-44257531 MS.gene050457:CDS
TGTTGTGGAACAAGAATGAG+AGG 0.618210 3.2:-44256233 MS.gene050457:CDS
GCTTGAACTCAGTTGACACT+GGG 0.627877 3.2:-44256272 MS.gene050457:CDS
CAGTAGCTAGTAAATTCCCT+TGG 0.629888 3.2:+44256349 None:intergenic
AATTTACTAGCTACTGGCGG+AGG 0.633586 3.2:-44256342 MS.gene050457:CDS
TCAAGCCAATGCCAATATGA+CGG 0.636859 3.2:+44256835 None:intergenic
GAGCCCAGATGGTTGGACAG+TGG 0.641101 3.2:-44256094 MS.gene050457:CDS
TCTGGTCTACAATTGGCCAG+TGG 0.642557 3.2:-44256480 MS.gene050457:CDS
ACCACATACTCACAACCGGA+GGG 0.650856 3.2:-44256605 MS.gene050457:CDS
GCACTACATGGTGACTGAAG+GGG 0.656801 3.2:-44257734 MS.gene050457:CDS
AGTTTGCGGATTGAAATGGT+CGG 0.668119 3.2:-44256505 MS.gene050457:CDS
GTTCAAGCATGCACCTGTGT+GGG 0.668846 3.2:+44256287 None:intergenic
CTGCAGCGGATGAAACCTTG+AGG 0.678181 3.2:-44256065 MS.gene050457:CDS
AGTTCAAGCATGCACCTGTG+TGG 0.678713 3.2:+44256286 None:intergenic
ACATTGTTGAAACATACAGA+GGG 0.688874 3.2:-44256539 MS.gene050457:CDS
AACCACATACTCACAACCGG+AGG 0.695066 3.2:-44256606 MS.gene050457:CDS
TGAGAGAAGAAATCAACTGG+CGG 0.700989 3.2:+44257583 None:intergenic
CACATTGTTGAAACATACAG+AGG 0.702329 3.2:-44256540 MS.gene050457:CDS
GGGATAGAAGTACTTCAACA+AGG 0.702662 3.2:-44256431 MS.gene050457:CDS
GGGAATTTACTAGCTACTGG+CGG 0.715639 3.2:-44256345 MS.gene050457:CDS
ATGTTACTACTTATCGAATG+CGG 0.717524 3.2:+44255962 None:intergenic
GTTGTGGAACAAGAATGAGA+GGG 0.727155 3.2:-44256232 MS.gene050457:CDS
ACCTGAGGAATAATTCGCCG+GGG 0.733838 3.2:+44257514 None:intergenic
ATAGAAGTACTTCAACAAGG+TGG 0.753913 3.2:-44256428 MS.gene050457:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAGAAAACTAGTAGT+AGG + chr3.2:44257052-44257071 None:intergenic 20.0%
!!! CACAAAATTGCAAAATATTT+TGG + chr3.2:44256668-44256687 None:intergenic 20.0%
!!! GATTTAAGAATTTTGAACTT+TGG - chr3.2:44256496-44256515 MS.gene050457:CDS 20.0%
!!! TGTTTTCTTAATCGTTTTTA+TGG - chr3.2:44256419-44256438 MS.gene050457:CDS 20.0%
! ATGATAATCAACTTTACATC+TGG - chr3.2:44257301-44257320 MS.gene050457:intron 25.0%
! TGATAATCAACTTTACATCT+GGG - chr3.2:44257302-44257321 MS.gene050457:intron 25.0%
!! CACAAAATTGCAAAATCTTT+TGG + chr3.2:44256561-44256580 None:intergenic 25.0%
!! GATTTGAGAATTTTGAACTT+CGG - chr3.2:44256603-44256622 MS.gene050457:CDS 25.0%
!!! ATCAGTTTTTGAAAATCAAG+TGG - chr3.2:44256388-44256407 MS.gene050457:CDS 25.0%
!!! TCAGTTTTTGAAAATCAAGT+GGG - chr3.2:44256389-44256408 MS.gene050457:CDS 25.0%
!!! TTTTGTGCTAATTGATTTGT+TGG - chr3.2:44256574-44256593 MS.gene050457:CDS 25.0%
AAATCCATAGCTGATCTATT+CGG + chr3.2:44255990-44256009 None:intergenic 30.0%
AATGTTCTTGCAATTGGATT+AGG - chr3.2:44256790-44256809 MS.gene050457:intron 30.0%
ACATTGTTGAAACATACAGA+GGG - chr3.2:44257214-44257233 MS.gene050457:intron 30.0%
AGGAAACACATTGTATTTGT+GGG - chr3.2:44256810-44256829 MS.gene050457:CDS 30.0%
ATAACGATGTATCGTTTGAA+GGG + chr3.2:44257009-44257028 None:intergenic 30.0%
ATTACCTCAATTTACTGGAT+TGG - chr3.2:44256758-44256777 MS.gene050457:intron 30.0%
TAATCCAATTGCAAGAACAT+TGG + chr3.2:44256791-44256810 None:intergenic 30.0%
TAGGAAACACATTGTATTTG+TGG - chr3.2:44256809-44256828 MS.gene050457:CDS 30.0%
TGACTATTACCTCAATTTAC+TGG - chr3.2:44256753-44256772 MS.gene050457:intron 30.0%
TTACCTCAATTTACTGGATT+GGG - chr3.2:44256759-44256778 MS.gene050457:intron 30.0%
! ACTTTGGAAATATCCTTCAA+TGG - chr3.2:44257584-44257603 MS.gene050457:CDS 30.0%
!! AGACAGGTTTTATACTTATC+TGG - chr3.2:44256979-44256998 MS.gene050457:CDS 30.0%
!! TCTTATCTGAAAGTGTTGAA+TGG - chr3.2:44256636-44256655 MS.gene050457:CDS 30.0%
!! TCTTGTGCTAATTGATTTGT+TGG - chr3.2:44256467-44256486 MS.gene050457:CDS 30.0%
AATAACCACATACTCACAAC+CGG - chr3.2:44257144-44257163 MS.gene050457:intron 35.0%
ATATCCTTCAATGGTGAAGA+TGG - chr3.2:44257593-44257612 MS.gene050457:CDS 35.0%
ATTTCAATCCGCAAACTTCT+CGG + chr3.2:44257245-44257264 None:intergenic 35.0%
CACAGAATCAGATAACACTT+TGG - chr3.2:44257568-44257587 MS.gene050457:CDS 35.0%
CACATTGTTGAAACATACAG+AGG - chr3.2:44257213-44257232 MS.gene050457:intron 35.0%
CACTTCAAGAGTTCTTCATA+TGG - chr3.2:44257632-44257651 MS.gene050457:CDS 35.0%
CATAACGATGTATCGTTTGA+AGG + chr3.2:44257010-44257029 None:intergenic 35.0%
GTTCTTGAAAGCTAGAATTC+TGG + chr3.2:44256138-44256157 None:intergenic 35.0%
TAATAGTCATCCACAATGTC+TGG + chr3.2:44256742-44256761 None:intergenic 35.0%
TACCTCAATTTACTGGATTG+GGG - chr3.2:44256760-44256779 MS.gene050457:intron 35.0%
TATTTGTGGGATGCATCAAA+CGG - chr3.2:44256823-44256842 MS.gene050457:CDS 35.0%
TCATGAGAGAAGAAATCAAC+TGG + chr3.2:44256176-44256195 None:intergenic 35.0%
! AGTTGAGAACTTTGAAAGGT+GGG - chr3.2:44257091-44257110 MS.gene050457:intron 35.0%
! TGCATGAACTCTAGTTCAAA+CGG - chr3.2:44256335-44256354 MS.gene050457:CDS 35.0%
!! AAAAGCATTCCAAAACCTCA+AGG + chr3.2:44257706-44257725 None:intergenic 35.0%
!! AACAGTAACAAGTTCTGAAG+TGG + chr3.2:44256851-44256870 None:intergenic 35.0%
!! ATAGAAGTACTTCAACAAGG+TGG - chr3.2:44257325-44257344 MS.gene050457:intron 35.0%
!! GTTACTGTTGATGATGAAGA+TGG - chr3.2:44256862-44256881 MS.gene050457:CDS 35.0%
!!! TTGAGGTTTTGGAATGCTTT+TGG - chr3.2:44257705-44257724 MS.gene050457:CDS 35.0%
AAGATAAAACCATCAAGCCC+CGG - chr3.2:44256222-44256241 MS.gene050457:CDS 40.0%
ATGCGGCTCAAATGTGAAAA+CGG + chr3.2:44257777-44257796 None:intergenic 40.0%
CAAGGGAATTTACTAGCTAC+TGG - chr3.2:44257405-44257424 MS.gene050457:intron 40.0%
CAGTAGCTAGTAAATTCCCT+TGG + chr3.2:44257407-44257426 None:intergenic 40.0%
CATACCGAATAGATCAGCTA+TGG - chr3.2:44255983-44256002 MS.gene050457:CDS 40.0%
CCCAACTTACAGATGTGATA+GGG + chr3.2:44256888-44256907 None:intergenic 40.0%
CCCTATCACATCTGTAAGTT+GGG - chr3.2:44256885-44256904 MS.gene050457:CDS 40.0%
CTAGTTCAAACGGCAAAAGT+CGG - chr3.2:44256345-44256364 MS.gene050457:CDS 40.0%
CTCAACTGCAGAAACATAAC+AGG + chr3.2:44257078-44257097 None:intergenic 40.0%
CTCATTCTTGTTCCACAACA+GGG + chr3.2:44257520-44257539 None:intergenic 40.0%
CTGCAGTTGAGAACTTTGAA+AGG - chr3.2:44257087-44257106 MS.gene050457:intron 40.0%
GCTAGTAAATTCCCTTGGAA+AGG + chr3.2:44257402-44257421 None:intergenic 40.0%
GTGGGTATTCCAAAACTTGA+TGG + chr3.2:44257451-44257470 None:intergenic 40.0%
GTTGTGGAACAAGAATGAGA+GGG - chr3.2:44257521-44257540 MS.gene050457:CDS 40.0%
TCAAGCCAATGCCAATATGA+CGG + chr3.2:44256921-44256940 None:intergenic 40.0%
TCTCATTCTTGTTCCACAAC+AGG + chr3.2:44257521-44257540 None:intergenic 40.0%
TGAGAGAAGAAATCAACTGG+CGG + chr3.2:44256173-44256192 None:intergenic 40.0%
TGTTGTGGAACAAGAATGAG+AGG - chr3.2:44257520-44257539 MS.gene050457:CDS 40.0%
TTCCCCAATCCAGTAAATTG+AGG + chr3.2:44256765-44256784 None:intergenic 40.0%
TTGATTATCATTCCCTCCAC+TGG + chr3.2:44257292-44257311 None:intergenic 40.0%
TTTCGATTATGCGCACTACA+TGG - chr3.2:44256007-44256026 MS.gene050457:CDS 40.0%
! AGTTTGCGGATTGAAATGGT+CGG - chr3.2:44257248-44257267 MS.gene050457:intron 40.0%
! CAGTTGAGAACTTTGAAAGG+TGG - chr3.2:44257090-44257109 MS.gene050457:intron 40.0%
! GAGAAGTTTGCGGATTGAAA+TGG - chr3.2:44257244-44257263 MS.gene050457:intron 40.0%
! GCGATGAAACCATCAAGTTT+TGG - chr3.2:44257439-44257458 MS.gene050457:intron 40.0%
!! CAGAAGCTCTAAACATGAAC+AGG - chr3.2:44256111-44256130 MS.gene050457:CDS 40.0%
!! GGGATAGAAGTACTTCAACA+AGG - chr3.2:44257322-44257341 MS.gene050457:intron 40.0%
!! TTGTTTTGCAGACTTCTGAG+AGG - chr3.2:44256704-44256723 MS.gene050457:intron 40.0%
!!! AAGTTTTGGAATACCCACAC+AGG - chr3.2:44257453-44257472 MS.gene050457:intron 40.0%
AATTCTACCATCCATCCCTC+CGG + chr3.2:44257166-44257185 None:intergenic 45.0%
AATTTACTAGCTACTGGCGG+AGG - chr3.2:44257411-44257430 MS.gene050457:intron 45.0%
ACACCTGAGGAATAATTCGC+CGG + chr3.2:44256244-44256263 None:intergenic 45.0%
ACTGAAGGGGCTAAAGCTAA+AGG - chr3.2:44256032-44256051 MS.gene050457:CDS 45.0%
AGCGCCAATGTTCTTGCAAT+TGG - chr3.2:44256784-44256803 MS.gene050457:intron 45.0%
AGGGGCTAAAGCTAAAGGTA+AGG - chr3.2:44256037-44256056 MS.gene050457:CDS 45.0%
ATTGGATGCTCCAGACATTG+TGG - chr3.2:44256729-44256748 MS.gene050457:intron 45.0%
CTGCAGTAAAAGCTCTTGCT+TGG - chr3.2:44257373-44257392 MS.gene050457:intron 45.0%
GCCCAACTTACAGATGTGAT+AGG + chr3.2:44256889-44256908 None:intergenic 45.0%
GCCCTATCACATCTGTAAGT+TGG - chr3.2:44256884-44256903 MS.gene050457:CDS 45.0%
GCTTGAACTCAGTTGACACT+GGG - chr3.2:44257481-44257500 MS.gene050457:intron 45.0%
GGATACAGCTTCAGATAGAC+AGG - chr3.2:44256963-44256982 MS.gene050457:CDS 45.0%
GGGAATTTACTAGCTACTGG+CGG - chr3.2:44257408-44257427 MS.gene050457:intron 45.0%
GTGAAGATGGCAGAACTCAA+TGG - chr3.2:44257606-44257625 MS.gene050457:CDS 45.0%
TAGCTTCCTGTAAGCTTCTC+TGG + chr3.2:44256087-44256106 None:intergenic 45.0%
TCTGCCATCTTCACCATTGA+AGG + chr3.2:44257600-44257619 None:intergenic 45.0%
TGCTTGAACTCAGTTGACAC+TGG - chr3.2:44257480-44257499 MS.gene050457:intron 45.0%
TTCCTGTAAGCTTCTCTGGA+AGG + chr3.2:44256083-44256102 None:intergenic 45.0%
! CGGATGAAACCTTGAGGTTT+TGG - chr3.2:44257694-44257713 MS.gene050457:CDS 45.0%
! GAACTTTGAAAGGTGGGCAT+AGG - chr3.2:44257097-44257116 MS.gene050457:intron 45.0%
! GCAGACTTCTGAGAGGATAT+TGG - chr3.2:44256711-44256730 MS.gene050457:intron 45.0%
!! ACAACTCTGAAGTGCAGCTA+TGG - chr3.2:44256941-44256960 MS.gene050457:CDS 45.0%
!! CAACTCTGAAGTGCAGCTAT+GGG - chr3.2:44256942-44256961 MS.gene050457:CDS 45.0%
!! GCAGCTTTTGTTGCTACTTC+TGG + chr3.2:44257735-44257754 None:intergenic 45.0%
!! TTGCTTGGTGTCCTTTCCAA+GGG - chr3.2:44257388-44257407 MS.gene050457:intron 45.0%
!!! ATATTTTATCATTATTATTT+TGG - chr3.2:44256311-44256330 MS.gene050457:CDS 5.0%
AACCACATACTCACAACCGG+AGG - chr3.2:44257147-44257166 MS.gene050457:intron 50.0%
AAGAAATCAACTGGCGGCGT+AGG + chr3.2:44256167-44256186 None:intergenic 50.0%
AATAATTCGCCGGGGCTTGA+TGG + chr3.2:44256234-44256253 None:intergenic 50.0%
ACCACATACTCACAACCGGA+GGG - chr3.2:44257148-44257167 MS.gene050457:intron 50.0%
ACCTGAGGAATAATTCGCCG+GGG + chr3.2:44256242-44256261 None:intergenic 50.0%
AGTTCAAGCATGCACCTGTG+TGG + chr3.2:44257470-44257489 None:intergenic 50.0%
ATGCCAATATGACGGCCATC+AGG + chr3.2:44256913-44256932 None:intergenic 50.0%
CACCTGAGGAATAATTCGCC+GGG + chr3.2:44256243-44256262 None:intergenic 50.0%
CGCACTACATGGTGACTGAA+GGG - chr3.2:44256018-44256037 MS.gene050457:CDS 50.0%
CTCAGGTATGTTCCCTGTTG+TGG - chr3.2:44257505-44257524 MS.gene050457:intron 50.0%
CTCCTTCCAGAGAAGCTTAC+AGG - chr3.2:44256078-44256097 MS.gene050457:CDS 50.0%
CTTCAACAAGGTGGCTTCAC+AGG - chr3.2:44257334-44257353 MS.gene050457:intron 50.0%
GATGGCCGTCATATTGGCAT+TGG - chr3.2:44256913-44256932 MS.gene050457:CDS 50.0%
GCACTACATGGTGACTGAAG+GGG - chr3.2:44256019-44256038 MS.gene050457:CDS 50.0%
GTCTACAATTGGCCAGTGGA+GGG - chr3.2:44257277-44257296 MS.gene050457:intron 50.0%
GTTCAAGCATGCACCTGTGT+GGG + chr3.2:44257469-44257488 None:intergenic 50.0%
TCTGGTCTACAATTGGCCAG+TGG - chr3.2:44257273-44257292 MS.gene050457:intron 50.0%
TTGCCACTGTCCAACCATCT+GGG + chr3.2:44257665-44257684 None:intergenic 50.0%
! AACGGCTCAGCTCTTGCTTT+TGG + chr3.2:44257759-44257778 None:intergenic 50.0%
! GGATTGAAATGGTCGGCTTC+TGG - chr3.2:44257255-44257274 MS.gene050457:intron 50.0%
! GTCGGCTTCTGGTCTACAAT+TGG - chr3.2:44257266-44257285 MS.gene050457:intron 50.0%
! TCTGTAAGTTGGGCTCCTGA+TGG - chr3.2:44256895-44256914 MS.gene050457:CDS 50.0%
! TGGAAGGAGAGCACACTTGT+GGG + chr3.2:44256067-44256086 None:intergenic 50.0%
!! CTTGCTTGGTGTCCTTTCCA+AGG - chr3.2:44257387-44257406 MS.gene050457:intron 50.0%
AAATCAACTGGCGGCGTAGG+TGG + chr3.2:44256164-44256183 None:intergenic 55.0%
AGCGAGTAGGGTCTTTGGCA+TGG - chr3.2:44257121-44257140 MS.gene050457:intron 55.0%
AGGGAGCTACTCAGCTCTCA+TGG - chr3.2:44257540-44257559 MS.gene050457:CDS 55.0%
CACACACACACACACACCTG+AGG + chr3.2:44256257-44256276 None:intergenic 55.0%
CATACTCACAACCGGAGGGA+TGG - chr3.2:44257152-44257171 MS.gene050457:intron 55.0%
CTCAGTTGACACTGGGTCTC+AGG - chr3.2:44257488-44257507 MS.gene050457:intron 55.0%
CTGCAGCGGATGAAACCTTG+AGG - chr3.2:44257688-44257707 MS.gene050457:CDS 55.0%
GCGCACTACATGGTGACTGA+AGG - chr3.2:44256017-44256036 MS.gene050457:CDS 55.0%
GCTCCTGATGGCCGTCATAT+TGG - chr3.2:44256907-44256926 MS.gene050457:CDS 55.0%
GGGCATGACCGAGAAGTTTG+CGG - chr3.2:44257234-44257253 MS.gene050457:intron 55.0%
GGTCTACAATTGGCCAGTGG+AGG - chr3.2:44257276-44257295 MS.gene050457:intron 55.0%
GTTGCCACTGTCCAACCATC+TGG + chr3.2:44257666-44257685 None:intergenic 55.0%
TAGGCAGCGAGTAGGGTCTT+TGG - chr3.2:44257116-44257135 MS.gene050457:intron 55.0%
TCCCTCCGGTTGTGAGTATG+TGG + chr3.2:44257152-44257171 None:intergenic 55.0%
! CTGGAAGGAGAGCACACTTG+TGG + chr3.2:44256068-44256087 None:intergenic 55.0%
CATATGGCGCAGAGCCCAGA+TGG - chr3.2:44257648-44257667 MS.gene050457:CDS 60.0%
CTCACAACCGGAGGGATGGA+TGG - chr3.2:44257156-44257175 MS.gene050457:intron 60.0%
GACAGTGGCAACAGCTGCAG+CGG - chr3.2:44257674-44257693 MS.gene050457:CDS 60.0%
GAGCCCAGATGGTTGGACAG+TGG - chr3.2:44257659-44257678 MS.gene050457:CDS 60.0%
GCCCCGGCGAATTATTCCTC+AGG - chr3.2:44256238-44256257 MS.gene050457:CDS 60.0%
GTGGGCATAGGCAGCGAGTA+GGG - chr3.2:44257109-44257128 MS.gene050457:intron 60.0%
CTAGCTACTGGCGGAGGCAG+TGG - chr3.2:44257417-44257436 MS.gene050457:intron 65.0%
GGTGGGCATAGGCAGCGAGT+AGG - chr3.2:44257108-44257127 MS.gene050457:intron 65.0%
TGGCGCAGAGCCCAGATGGT+TGG - chr3.2:44257652-44257671 MS.gene050457:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 44255972 44257803 44255972 ID=MS.gene050457
chr3.2 mRNA 44255972 44257803 44255972 ID=MS.gene050457.t1;Parent=MS.gene050457
chr3.2 exon 44257516 44257803 44257516 ID=MS.gene050457.t1.exon1;Parent=MS.gene050457.t1
chr3.2 CDS 44257516 44257803 44257516 ID=cds.MS.gene050457.t1;Parent=MS.gene050457.t1
chr3.2 exon 44256791 44257060 44256791 ID=MS.gene050457.t1.exon2;Parent=MS.gene050457.t1
chr3.2 CDS 44256791 44257060 44256791 ID=cds.MS.gene050457.t1;Parent=MS.gene050457.t1
chr3.2 exon 44255972 44256682 44255972 ID=MS.gene050457.t1.exon3;Parent=MS.gene050457.t1
chr3.2 CDS 44255972 44256682 44255972 ID=cds.MS.gene050457.t1;Parent=MS.gene050457.t1
Gene Sequence

>MS.gene050457

TTGGATAGATTCATACCGAATAGATCAGCTATGGATTTCGATTATGCGCACTACATGGTGACTGAAGGGGCTAAAGCTAAAGGTAAGGAAAACCCACAAGTGTGCTCTCCTTCCAGAGAAGCTTACAGGAAGCTACTTGCAGAAGCTCTAAACATGAACAGGACCAGAATTCTAGCTTTCAAGAACAAGCCACCTACGCCGCCAGTTGATTTCTTCTCTCATGATATCATTACTTCATCAACTCTTCGACAAGATAAAACCATCAAGCCCCGGCGAATTATTCCTCAGGTGTGTGTGTGTGTGTGTGTGTTTCTTAATGATATCTGATTCATATTTCATATATTTTATCATTATTATTTTGGTTGCATGAACTCTAGTTCAAACGGCAAAAGTCGGATTTTAAAATTTTGCACTTGATCAGTTTTTGAAAATCAAGTGGGTCTGAATTGTTTTCTTAATCGTTTTTATGGTGTGTGAAATCACAATAGTTTGCAATCTTGTGCTAATTGATTTGTTGGTTATCTGATTTAAGAATTTTGAACTTTGGTTTTCTTAATTCTTATCTGAAAGTGTTGTATGTTGTAAACCAAAAGATTTTGCAATTTTGTGCTAATTGATTTGTTGGTTATCTGATTTGAGAATTTTGAACTTCGGTTTTCTTAATTCTTATCTGAAAGTGTTGAATGGTGTAAACCAAAATATTTTGCAATTTTGTGCTAATTGATTGATTTGTTGTTTTGCAGACTTCTGAGAGGATATTGGATGCTCCAGACATTGTGGATGACTATTACCTCAATTTACTGGATTGGGGAAGCGCCAATGTTCTTGCAATTGGATTAGGAAACACATTGTATTTGTGGGATGCATCAAACGGTTCCACTTCAGAACTTGTTACTGTTGATGATGAAGATGGCCCTATCACATCTGTAAGTTGGGCTCCTGATGGCCGTCATATTGGCATTGGCTTGAACAACTCTGAAGTGCAGCTATGGGATACAGCTTCAGATAGACAGGTTTTATACTTATCTGGTTTACCCTTCAAACGATACATCGTTATGAGCTATTGAGTATATAATTCCTACTACTAGTTTTCTAATATTATTCCTGTTATGTTTCTGCAGTTGAGAACTTTGAAAGGTGGGCATAGGCAGCGAGTAGGGTCTTTGGCATGGAATAACCACATACTCACAACCGGAGGGATGGATGGTAGAATTATCAATAATGATGTAAGAATTAGAGCACACATTGTTGAAACATACAGAGGGCATGACCGAGAAGTTTGCGGATTGAAATGGTCGGCTTCTGGTCTACAATTGGCCAGTGGAGGGAATGATAATCAACTTTACATCTGGGATAGAAGTACTTCAACAAGGTGGCTTCACAGGCTTGAAGATCATACATCTGCAGTAAAAGCTCTTGCTTGGTGTCCTTTCCAAGGGAATTTACTAGCTACTGGCGGAGGCAGTGGCGATGAAACCATCAAGTTTTGGAATACCCACACAGGTGCATGCTTGAACTCAGTTGACACTGGGTCTCAGGTATGTTCCCTGTTGTGGAACAAGAATGAGAGGGAGCTACTCAGCTCTCATGGTTTTACACAGAATCAGATAACACTTTGGAAATATCCTTCAATGGTGAAGATGGCAGAACTCAATGGTCACACTTCAAGAGTTCTTCATATGGCGCAGAGCCCAGATGGTTGGACAGTGGCAACAGCTGCAGCGGATGAAACCTTGAGGTTTTGGAATGCTTTTGGCACTCCAGAAGTAGCAACAAAAGCTGCACCAAAAGCAAGAGCTGAGCCGTTTTCACATTTGAGCCGCATTCGATAA

Protein sequence

>MS.gene050457.t1

LDRFIPNRSAMDFDYAHYMVTEGAKAKGKENPQVCSPSREAYRKLLAEALNMNRTRILAFKNKPPTPPVDFFSHDIITSSTLRQDKTIKPRRIIPQTSERILDAPDIVDDYYLNLLDWGSANVLAIGLGNTLYLWDASNGSTSELVTVDDEDGPITSVSWAPDGRHIGIGLNNSEVQLWDTASDRQLRTLKGGHRQRVGSLAWNNHILTTGGMDGRIINNDVRIRAHIVETYRGHDREVCGLKWSASGLQLASGGNDNQLYIWDRSTSTRWLHRLEDHTSAVKALAWCPFQGNLLATGGGSGDETIKFWNTHTGACLNSVDTGSQVCSLLWNKNERELLSSHGFTQNQITLWKYPSMVKMAELNGHTSRVLHMAQSPDGWTVATAAADETLRFWNAFGTPEVATKAAPKARAEPFSHLSRIR