AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene027071

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027071.t1 MTR_3g051690 94.336 459 20 2 1 453 1 459 0.0 897
MS.gene027071.t1 MTR_5g008010 90.611 458 34 4 1 453 1 454 0.0 850
MS.gene027071.t1 MTR_7g106870 73.836 451 105 7 12 453 11 457 0.0 687
MS.gene027071.t1 MTR_7g451830 65.772 447 127 9 15 453 3 431 0.0 571
MS.gene027071.t1 MTR_7g047640 65.772 447 127 9 15 453 3 431 0.0 571
MS.gene027071.t1 MTR_7g057540 63.839 448 131 9 14 453 2 426 0.0 544
MS.gene027071.t1 MTR_7g055590 63.758 447 131 9 14 452 2 425 0.0 541
MS.gene027071.t1 MTR_7g053100 61.283 452 145 9 15 453 2 436 0.0 525
MS.gene027071.t1 MTR_7g034625 71.698 318 83 2 128 438 13 330 5.75e-168 476
MS.gene027071.t1 MTR_2g100540 50.569 439 162 12 25 453 4 397 6.58e-130 381
MS.gene027071.t1 MTR_2g100460 59.509 326 118 5 128 451 69 382 1.40e-127 375
MS.gene027071.t1 MTR_2g060710 45.036 413 201 9 33 429 26 428 1.56e-120 359
MS.gene027071.t1 MTR_3g067940 43.943 421 212 7 33 440 57 466 1.35e-115 348
MS.gene027071.t1 MTR_4g102510 43.198 419 206 9 33 432 51 456 1.16e-109 332
MS.gene027071.t1 MTR_4g415070 60.345 58 23 0 378 435 57 114 7.13e-17 81.6
MS.gene027071.t1 MTR_2g012630 27.119 236 158 9 144 373 18 245 6.57e-16 80.9
MS.gene027071.t1 MTR_2g012630 27.119 236 158 9 144 373 18 245 8.14e-16 80.9
MS.gene027071.t1 MTR_1g054300 26.263 297 161 10 178 427 114 399 2.91e-15 78.2
MS.gene027071.t1 MTR_1g054300 26.866 268 168 11 165 425 235 481 1.06e-14 76.6
MS.gene027071.t1 MTR_6g004040 28.571 203 136 7 171 370 47 243 3.59e-15 78.6
MS.gene027071.t1 MTR_5g016370 23.693 287 163 8 147 425 312 550 7.20e-14 74.3
MS.gene027071.t1 MTR_5g016350 23.611 288 176 9 141 426 230 475 3.36e-12 68.9
MS.gene027071.t1 MTR_5g016350 23.693 287 175 9 141 425 294 538 3.81e-12 68.6
MS.gene027071.t1 MTR_4g095058 25.000 252 169 10 186 426 292 534 1.52e-11 67.0
MS.gene027071.t1 MTR_4g095058 25.000 252 169 10 186 426 290 532 1.63e-11 66.6
MS.gene027071.t1 MTR_7g086360 23.502 217 159 4 212 426 41 252 1.84e-11 65.9
MS.gene027071.t1 MTR_3g106080 24.026 308 192 10 159 434 326 623 2.76e-11 66.2
MS.gene027071.t1 MTR_1g049000 40.426 94 46 3 204 288 8 100 3.20e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027071.t1 AT4G33270 76.821 453 96 4 7 453 8 457 0.0 717
MS.gene027071.t1 AT4G33260 77.252 444 92 4 16 453 7 447 0.0 690
MS.gene027071.t1 AT4G33260 75.176 427 97 4 16 436 7 430 0.0 657
MS.gene027071.t1 AT5G27570 67.171 463 120 8 7 453 4 450 0.0 615
MS.gene027071.t1 AT5G27080 67.123 438 129 5 23 453 13 442 0.0 590
MS.gene027071.t1 AT5G26900 64.967 451 143 6 9 453 3 444 0.0 582
MS.gene027071.t1 AT5G27945 61.456 371 123 5 99 453 62 428 8.00e-156 448
MS.gene027071.t1 AT4G22910 42.754 414 212 7 33 432 62 464 7.86e-112 338
MS.gene027071.t1 AT5G13840 51.148 305 146 3 131 435 164 465 1.11e-109 332
MS.gene027071.t1 AT5G13840 51.148 305 146 3 131 435 164 465 1.11e-109 332
MS.gene027071.t1 AT4G11920 41.647 425 214 7 33 438 53 462 5.82e-109 330
MS.gene027071.t1 AT5G08390 29.487 234 135 10 140 370 37 243 2.93e-16 82.0
MS.gene027071.t1 AT1G11160 29.126 206 133 8 144 344 18 215 4.73e-16 81.6
MS.gene027071.t1 AT1G11160 29.126 206 133 8 144 344 18 215 4.85e-16 81.3
MS.gene027071.t1 AT1G11160 29.126 206 133 8 144 344 18 215 5.26e-16 81.3
MS.gene027071.t1 AT1G11160 30.864 162 104 6 185 344 18 173 2.96e-15 79.0
MS.gene027071.t1 AT1G61210 26.577 222 144 8 142 350 6 221 4.03e-15 78.6
MS.gene027071.t1 AT1G61210 26.577 222 144 8 142 350 6 221 4.34e-15 78.6
MS.gene027071.t1 AT1G61210 26.577 222 144 8 142 350 6 221 4.50e-15 78.6
MS.gene027071.t1 AT5G52820 29.032 248 152 12 186 427 244 473 2.77e-14 75.1
MS.gene027071.t1 AT5G23430 28.986 207 118 8 140 344 37 216 5.35e-14 75.1
MS.gene027071.t1 AT5G23430 28.986 207 118 8 140 344 37 216 5.35e-14 75.1
MS.gene027071.t1 AT5G23430 28.986 207 118 8 140 344 37 216 5.80e-14 74.7
MS.gene027071.t1 AT5G25150 24.850 334 212 11 135 440 305 627 1.50e-12 70.1
MS.gene027071.t1 AT5G25150 25.806 310 191 11 159 440 329 627 1.76e-12 70.1
MS.gene027071.t1 AT2G32700 22.951 244 172 8 186 425 574 805 2.68e-12 69.7
MS.gene027071.t1 AT2G32700 22.951 244 172 8 186 425 553 784 3.02e-12 69.3
MS.gene027071.t1 AT2G32700 22.951 244 172 8 186 425 555 786 3.03e-12 69.3
MS.gene027071.t1 AT2G32700 22.951 244 172 8 186 425 555 786 3.03e-12 69.3
MS.gene027071.t1 AT2G32700 22.951 244 172 8 186 425 555 786 3.03e-12 69.3
MS.gene027071.t1 AT2G32700 22.951 244 172 8 186 425 555 786 3.03e-12 69.3
MS.gene027071.t1 AT2G32700 22.951 244 172 8 186 425 555 786 3.03e-12 69.3
MS.gene027071.t1 AT5G13480 26.957 230 149 10 186 408 137 354 5.39e-12 68.6
MS.gene027071.t1 AT5G13480 30.769 182 116 7 162 340 241 415 3.72e-11 65.9
MS.gene027071.t1 AT5G13480 26.957 230 149 10 186 408 114 331 6.15e-12 68.2
MS.gene027071.t1 AT5G13480 30.769 182 116 7 162 340 218 392 4.00e-11 65.5
MS.gene027071.t1 AT5G13480 26.957 230 149 10 186 408 114 331 6.52e-12 68.2
MS.gene027071.t1 AT5G13480 30.769 182 116 7 162 340 218 392 4.54e-11 65.5
MS.gene027071.t1 AT5G13480 26.957 230 149 10 186 408 126 343 7.87e-12 67.8
MS.gene027071.t1 AT5G13480 30.769 182 116 7 162 340 230 404 5.82e-11 65.1
MS.gene027071.t1 AT3G49660 23.600 250 177 8 182 425 71 312 9.99e-12 66.2
MS.gene027071.t1 AT2G33340 26.042 192 134 5 238 426 236 422 1.67e-11 66.6
MS.gene027071.t1 AT2G33340 26.042 192 134 5 238 426 236 422 1.67e-11 66.6
MS.gene027071.t1 AT2G33340 26.042 192 134 5 238 426 236 422 1.69e-11 66.6
MS.gene027071.t1 AT4G02730 26.728 217 146 9 215 426 33 241 1.95e-11 65.5
MS.gene027071.t1 AT5G67320 25.524 286 161 13 147 426 330 569 2.00e-11 66.6
MS.gene027071.t1 AT1G04510 25.116 215 152 5 238 448 236 445 2.17e-11 66.2
MS.gene027071.t1 AT1G04510 25.116 215 152 5 238 448 236 445 2.31e-11 66.2

Find 127 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGATGAAACCTTGAGGTTT+TGG 0.193519 3.2:+44555314 MS.gene027071:CDS
GTTGCCACTGTCCAACCATC+TGG 0.273358 3.2:-44555283 None:intergenic
AACGGCTCAGCTCTTGCTTT+TGG 0.277205 3.2:-44555376 None:intergenic
TTACCTCAATTTACTAGATT+GGG 0.295038 3.2:+44554379 MS.gene027071:CDS
CTCCTTCCAGAGAAGCTTAC+AGG 0.301895 3.2:+44553844 MS.gene027071:CDS
ATTACCTCAATTTACTAGAT+TGG 0.321252 3.2:+44554378 MS.gene027071:CDS
TTCTCTCTAACAATGGCTTC+AGG 0.336781 3.2:+44553460 None:intergenic
TCAGACCTCTGAGAGGATAT+TGG 0.343544 3.2:+44554331 MS.gene027071:intron
GGATTGAAATGGTCGGCTTC+TGG 0.343844 3.2:+44554875 MS.gene027071:CDS
AATGTTCTTGCAATAGCATT+AGG 0.348040 3.2:+44554410 MS.gene027071:CDS
ATGATAATCAACTTTACATC+TGG 0.350065 3.2:+44554921 MS.gene027071:CDS
GCGATGAAACCATCAAGTTT+TGG 0.364930 3.2:+44555059 MS.gene027071:CDS
TAGCTTCCTGTAAGCTTCTC+TGG 0.375997 3.2:-44553850 None:intergenic
TCTCATTCTTGTTCCACAAC+AGG 0.376647 3.2:-44555138 None:intergenic
GCTCCTGATGGCCGTCATAT+TGG 0.389395 3.2:+44554527 MS.gene027071:CDS
ATTTCAATCCGCAAACTTCT+CGG 0.394694 3.2:-44554862 None:intergenic
AATAATTCGCCGGGGCTTGA+TGG 0.396021 3.2:-44553997 None:intergenic
CCCTATCACATCTGTAAGTT+GGG 0.396604 3.2:+44554505 MS.gene027071:CDS
TCTGCCATCTTCACCATTGA+AGG 0.397901 3.2:-44555217 None:intergenic
GGATACAGCTTCATATAAAC+AGG 0.400364 3.2:+44554583 MS.gene027071:CDS
CAAGGGAATTTGCTAGCTAC+TGG 0.408913 3.2:+44555025 MS.gene027071:CDS
CTCAGTTGACACTGGGTCTC+AGG 0.408962 3.2:+44555108 MS.gene027071:CDS
CAGAAGCTTTAAACATGAAC+AGG 0.411753 3.2:+44553877 MS.gene027071:CDS
TAGGAAACACATTGTATTTG+TGG 0.412235 3.2:+44554429 MS.gene027071:CDS
CTAGCTACTGGCGGAGGCAG+TGG 0.415453 3.2:+44555037 MS.gene027071:CDS
GCCCTATCACATCTGTAAGT+TGG 0.420766 3.2:+44554504 MS.gene027071:CDS
GAGAAGTTTGCGGATTGAAA+TGG 0.425267 3.2:+44554864 MS.gene027071:CDS
CTCAGGTATGTTCCCTGTTG+TGG 0.426699 3.2:+44555125 MS.gene027071:CDS
TAATAGTCATCCACAATGTC+TGG 0.428065 3.2:-44554359 None:intergenic
CTTGCTTGGTGTCCTTTCCA+AGG 0.428743 3.2:+44555007 MS.gene027071:CDS
GTGGGTATTCCAAAACTTGA+TGG 0.428833 3.2:-44555068 None:intergenic
TAGGCAGCGAGTAGGGTCTT+TGG 0.428851 3.2:+44554736 MS.gene027071:CDS
GTCGGCTTCTGGTCTACAAT+TGG 0.444050 3.2:+44554886 MS.gene027071:CDS
CACAGAATCAGCTAACACTT+TGG 0.446675 3.2:+44555188 MS.gene027071:CDS
AAATCCATAGCTGATCTATT+CGG 0.447023 3.2:-44553753 None:intergenic
GCCCAACTTACAGATGTGAT+AGG 0.450468 3.2:-44554506 None:intergenic
AGGAAACACATTGTATTTGT+GGG 0.452538 3.2:+44554430 MS.gene027071:CDS
CTTCAACAAGGTGGCTTCAC+AGG 0.460645 3.2:+44554954 MS.gene027071:CDS
CTCCGTAAGTGTTCCTGAAG+AGG 0.466289 3.2:-44553523 None:intergenic
TTGCTTGGTGTCCTTTCCAA+GGG 0.471233 3.2:+44555008 MS.gene027071:CDS
TCATGAGAGAAGAAATCAAC+TGG 0.471268 3.2:-44553939 None:intergenic
ACAACTCTGAAGTGCAGCTA+TGG 0.484474 3.2:+44554561 MS.gene027071:CDS
ATGCCAATATGACGGCCATC+AGG 0.485428 3.2:-44554530 None:intergenic
TTCCTCTTCAGGAACACTTA+CGG 0.486142 3.2:+44553521 MS.gene027071:CDS
CACTTCAAGAGTTCTTCATA+TGG 0.487383 3.2:+44555252 MS.gene027071:CDS
TTGATTATCATTCCCTCCAC+TGG 0.491219 3.2:-44554909 None:intergenic
TTGCCACTGTCCAACCATCT+GGG 0.492660 3.2:-44555282 None:intergenic
TGGAAGGAGAGCACACTTGT+GGG 0.493184 3.2:-44553830 None:intergenic
ACTTTGGAAATATCCTTCAA+TGG 0.495344 3.2:+44555204 MS.gene027071:CDS
GATGGCCGTCATATTGGCAT+TGG 0.495923 3.2:+44554533 MS.gene027071:CDS
ATATCCTTCAATGGTGAAGA+TGG 0.498891 3.2:+44555213 MS.gene027071:CDS
AACAACCACATACTCACAAC+CGG 0.499451 3.2:+44554764 MS.gene027071:CDS
CGCACTACATGGTGACTGAA+GGG 0.507766 3.2:+44553784 MS.gene027071:CDS
CTGGAAGGAGAGCACACTTG+TGG 0.508404 3.2:-44553831 None:intergenic
AAGAAATCAACTGGCGGCGT+AGG 0.510142 3.2:-44553930 None:intergenic
ATGCGGCTCAAATGTGAAAA+CGG 0.515552 3.2:-44555394 None:intergenic
GGGCATGACCGAGAAGTTTG+CGG 0.518071 3.2:+44554854 MS.gene027071:CDS
CTGCAGTTGAGAACTTTGAA+AGG 0.529944 3.2:+44554707 MS.gene027071:intron
GAACTTTGAAAGGTGGGCAT+AGG 0.530523 3.2:+44554717 MS.gene027071:CDS
GCCCCGGCGAATTATTCCTC+AGG 0.533857 3.2:+44554004 MS.gene027071:CDS
CTCATTCTTGTTCCACAACA+GGG 0.537252 3.2:-44555137 None:intergenic
CTGCAGTAAAAGCTCTTGCT+TGG 0.539760 3.2:+44554993 MS.gene027071:CDS
ACACCTGAGGAATAATTCGC+CGG 0.542147 3.2:-44554007 None:intergenic
TGATAATCAACTTTACATCT+GGG 0.543770 3.2:+44554922 MS.gene027071:CDS
TTTCGATTATGCGCACTACA+TGG 0.544215 3.2:+44553773 MS.gene027071:CDS
TGCTTGAACTCAGTTGACAC+TGG 0.544299 3.2:+44555100 MS.gene027071:CDS
GACAGTGGCAACAGCTGCAG+CGG 0.545471 3.2:+44555294 MS.gene027071:CDS
AGGGAGCTACTCAGCTCTCA+TGG 0.545560 3.2:+44555160 MS.gene027071:CDS
TATTTGTGGGATGCATCAAA+CGG 0.551368 3.2:+44554443 MS.gene027071:CDS
AAATCAACTGGCGGCGTAGG+TGG 0.551699 3.2:-44553927 None:intergenic
CAACTCTGAAGTGCAGCTAT+GGG 0.552386 3.2:+44554562 MS.gene027071:CDS
TAATGCTATTGCAAGAACAT+TGG 0.553424 3.2:-44554408 None:intergenic
CTCACAACCGGAGGGATGGA+TGG 0.555824 3.2:+44554776 MS.gene027071:CDS
CATATGGCGCAGAGCCCAGA+TGG 0.555918 3.2:+44555268 MS.gene027071:CDS
GTGGGCATAGGCAGCGAGTA+GGG 0.557831 3.2:+44554729 MS.gene027071:CDS
CACCTGAGGAATAATTCGCC+GGG 0.559324 3.2:-44554006 None:intergenic
AGTTGAGAACTTTGAAAGGT+GGG 0.559397 3.2:+44554711 MS.gene027071:intron
TGGCGCAGAGCCCAGATGGT+TGG 0.562028 3.2:+44555272 MS.gene027071:CDS
GTCTACAATTGGCCAGTGGA+GGG 0.570881 3.2:+44554897 MS.gene027071:CDS
GTGAAGATGGCAGAACTCAA+TGG 0.571074 3.2:+44555226 MS.gene027071:CDS
GCGCACTACATGGTGACTGA+AGG 0.571364 3.2:+44553783 MS.gene027071:CDS
CATACTCACAACCGGAGGGA+TGG 0.571933 3.2:+44554772 MS.gene027071:CDS
CAGTTGAGAACTTTGAAAGG+TGG 0.572101 3.2:+44554710 MS.gene027071:intron
TACCTCAATTTACTAGATTG+GGG 0.572259 3.2:+44554380 MS.gene027071:CDS
TTCCCCAATCTAGTAAATTG+AGG 0.574191 3.2:-44554382 None:intergenic
GGTCTACAATTGGCCAGTGG+AGG 0.575013 3.2:+44554896 MS.gene027071:CDS
TCCCTCCGGTTGTGAGTATG+TGG 0.579028 3.2:-44554769 None:intergenic
TTCCTGTAAGCTTCTCTGGA+AGG 0.579286 3.2:-44553846 None:intergenic
ACTGAAGGGGCTAAAGCTAA+AGG 0.581037 3.2:+44553798 MS.gene027071:CDS
AGGGGCTAAAGCTAAAGGTA+AGG 0.581254 3.2:+44553803 MS.gene027071:CDS
AACGGTAACGAGTTCTGAAG+TGG 0.583490 3.2:-44554468 None:intergenic
TCTGTAAGTTGGGCTCCTGA+TGG 0.584539 3.2:+44554515 MS.gene027071:CDS
CCCAACTTACAGATGTGATA+GGG 0.585245 3.2:-44554505 None:intergenic
AATTCTACCATCCATCCCTC+CGG 0.585408 3.2:-44554783 None:intergenic
AAAAGCATTCCAAAACCTCA+AGG 0.587395 3.2:-44555323 None:intergenic
GCTAGCAAATTCCCTTGGAA+AGG 0.591056 3.2:-44555019 None:intergenic
GGTGGGCATAGGCAGCGAGT+AGG 0.596714 3.2:+44554728 MS.gene027071:CDS
CATACCGAATAGATCAGCTA+TGG 0.601151 3.2:+44553749 MS.gene027071:CDS
AGCGAGTAGGGTCTTTGGCA+TGG 0.601597 3.2:+44554741 MS.gene027071:CDS
GTTACCGTTGATGATGAAGA+TGG 0.611930 3.2:+44554482 MS.gene027071:CDS
ATTGGATGCTCCAGACATTG+TGG 0.612151 3.2:+44554349 MS.gene027071:CDS
AAGATAAAACCATCAAGCCC+CGG 0.617625 3.2:+44553988 MS.gene027071:CDS
TGTTGTGGAACAAGAATGAG+AGG 0.618210 3.2:+44555140 MS.gene027071:CDS
AGGGCCATCTTCATCATCAA+CGG 0.626287 3.2:-44554486 None:intergenic
GCTTGAACTCAGTTGACACT+GGG 0.627877 3.2:+44555101 MS.gene027071:CDS
CAGTAGCTAGCAAATTCCCT+TGG 0.635739 3.2:-44555024 None:intergenic
TCAAGCCAATGCCAATATGA+CGG 0.636859 3.2:-44554538 None:intergenic
GAGCCCAGATGGTTGGACAG+TGG 0.641101 3.2:+44555279 MS.gene027071:CDS
TCTGGTCTACAATTGGCCAG+TGG 0.642557 3.2:+44554893 MS.gene027071:CDS
ACCACATACTCACAACCGGA+GGG 0.650856 3.2:+44554768 MS.gene027071:CDS
AATTTGCTAGCTACTGGCGG+AGG 0.655067 3.2:+44555031 MS.gene027071:CDS
GGGAATTTGCTAGCTACTGG+CGG 0.656204 3.2:+44555028 MS.gene027071:CDS
GCACTACATGGTGACTGAAG+GGG 0.656801 3.2:+44553785 MS.gene027071:CDS
AGTTTGCGGATTGAAATGGT+CGG 0.668119 3.2:+44554868 MS.gene027071:CDS
GTTCAAGCATGCACCTGTGT+GGG 0.668846 3.2:-44555086 None:intergenic
CTGCAGCGGATGAAACCTTG+AGG 0.678181 3.2:+44555308 MS.gene027071:CDS
AGTTCAAGCATGCACCTGTG+TGG 0.678713 3.2:-44555087 None:intergenic
ACATTGTTGAAACATACAGA+GGG 0.688874 3.2:+44554834 MS.gene027071:CDS
AGCATCCAATATCCTCTCAG+AGG 0.690954 3.2:-44554336 None:intergenic
AACCACATACTCACAACCGG+AGG 0.695066 3.2:+44554767 MS.gene027071:CDS
TGAGAGAAGAAATCAACTGG+CGG 0.700989 3.2:-44553936 None:intergenic
CACATTGTTGAAACATACAG+AGG 0.702329 3.2:+44554833 MS.gene027071:CDS
GGGATAGAAGTACTTCAACA+AGG 0.702662 3.2:+44554942 MS.gene027071:CDS
ATGTTACTACTTATCGAATG+CGG 0.717524 3.2:-44555411 None:intergenic
GTTGTGGAACAAGAATGAGA+GGG 0.727155 3.2:+44555141 MS.gene027071:CDS
ACCTGAGGAATAATTCGCCG+GGG 0.733838 3.2:-44554005 None:intergenic
ATAGAAGTACTTCAACAAGG+TGG 0.753913 3.2:+44554945 MS.gene027071:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAATTTTTTCATTATTA+GGG + chr3.2:44553567-44553586 MS.gene027071:intron 10.0%
!!! TAAGAAATTTTTTCATTATT+AGG + chr3.2:44553566-44553585 MS.gene027071:intron 10.0%
!! ATAATAATGTATCGTTTAAA+GGG - chr3.2:44554629-44554648 None:intergenic 15.0%
!!! TTTTCAAAATAGAATTACAT+TGG - chr3.2:44553603-44553622 None:intergenic 15.0%
!! AATATTAGAAAACTAGTAGT+AGG - chr3.2:44554672-44554691 None:intergenic 20.0%
!! CATAATAATGTATCGTTTAA+AGG - chr3.2:44554630-44554649 None:intergenic 20.0%
!!! CAAGTGCAAAATTTTAAAAT+CGG - chr3.2:44554136-44554155 None:intergenic 20.0%
!!! GATTTGAAAATTTTGAACTT+TGG + chr3.2:44554264-44554283 MS.gene027071:intron 20.0%
!!! TGTTTTCTTAATAGTTTGTA+TGG + chr3.2:44554187-44554206 MS.gene027071:intron 20.0%
! ATGATAATCAACTTTACATC+TGG + chr3.2:44554921-44554940 MS.gene027071:CDS 25.0%
! ATTACCTCAATTTACTAGAT+TGG + chr3.2:44554378-44554397 MS.gene027071:CDS 25.0%
! TGATAATCAACTTTACATCT+GGG + chr3.2:44554922-44554941 MS.gene027071:CDS 25.0%
! TTACCTCAATTTACTAGATT+GGG + chr3.2:44554379-44554398 MS.gene027071:CDS 25.0%
!!! AAACAGGTTTTATACTTATC+TGG + chr3.2:44554599-44554618 MS.gene027071:intron 25.0%
!!! ATCAGTTTTTGAAAATCAAG+TGG + chr3.2:44554156-44554175 MS.gene027071:intron 25.0%
!!! TCAGTTTTTGAAAATCAAGT+GGG + chr3.2:44554157-44554176 MS.gene027071:intron 25.0%
AAATCCATAGCTGATCTATT+CGG - chr3.2:44553756-44553775 None:intergenic 30.0%
AATGTTCTTGCAATAGCATT+AGG + chr3.2:44554410-44554429 MS.gene027071:CDS 30.0%
ACATTGTTGAAACATACAGA+GGG + chr3.2:44554834-44554853 MS.gene027071:CDS 30.0%
AGAAAACTAGTAGTAGGAAA+TGG - chr3.2:44554666-44554685 None:intergenic 30.0%
AGGAAACACATTGTATTTGT+GGG + chr3.2:44554430-44554449 MS.gene027071:CDS 30.0%
CTATGTCATGATAACTAACT+AGG + chr3.2:44553639-44553658 MS.gene027071:intron 30.0%
TAATGCTATTGCAAGAACAT+TGG - chr3.2:44554411-44554430 None:intergenic 30.0%
TACCTCAATTTACTAGATTG+GGG + chr3.2:44554380-44554399 MS.gene027071:CDS 30.0%
TAGGAAACACATTGTATTTG+TGG + chr3.2:44554429-44554448 MS.gene027071:CDS 30.0%
! ACTTTGGAAATATCCTTCAA+TGG + chr3.2:44555204-44555223 MS.gene027071:CDS 30.0%
!! AAAACGTGTTTGAGTTTTGA+TGG - chr3.2:44553503-44553522 None:intergenic 30.0%
!! GTTTTTGAAAGCTAGAATTC+TGG - chr3.2:44553904-44553923 None:intergenic 30.0%
!! TCTTGTTCTAGTTGATTTGT+TGG + chr3.2:44554235-44554254 MS.gene027071:intron 30.0%
ATATCCTTCAATGGTGAAGA+TGG + chr3.2:44555213-44555232 MS.gene027071:CDS 35.0%
ATTTCAATCCGCAAACTTCT+CGG - chr3.2:44554865-44554884 None:intergenic 35.0%
CACATTGTTGAAACATACAG+AGG + chr3.2:44554833-44554852 MS.gene027071:CDS 35.0%
CACTTCAAGAGTTCTTCATA+TGG + chr3.2:44555252-44555271 MS.gene027071:CDS 35.0%
GGATACAGCTTCATATAAAC+AGG + chr3.2:44554583-44554602 MS.gene027071:CDS 35.0%
TAATAGTCATCCACAATGTC+TGG - chr3.2:44554362-44554381 None:intergenic 35.0%
TATTTGTGGGATGCATCAAA+CGG + chr3.2:44554443-44554462 MS.gene027071:CDS 35.0%
TCATGAGAGAAGAAATCAAC+TGG - chr3.2:44553942-44553961 None:intergenic 35.0%
TTCCCCAATCTAGTAAATTG+AGG - chr3.2:44554385-44554404 None:intergenic 35.0%
! AGTTGAGAACTTTGAAAGGT+GGG + chr3.2:44554711-44554730 MS.gene027071:intron 35.0%
! TGCATGAACTCTAGTTCAAA+CGG + chr3.2:44554103-44554122 MS.gene027071:intron 35.0%
!! AAAAGCATTCCAAAACCTCA+AGG - chr3.2:44555326-44555345 None:intergenic 35.0%
!! ATAGAAGTACTTCAACAAGG+TGG + chr3.2:44554945-44554964 MS.gene027071:CDS 35.0%
!! CAGAAGCTTTAAACATGAAC+AGG + chr3.2:44553877-44553896 MS.gene027071:CDS 35.0%
!! TTGATTTGTTTGTGACCAGT+TGG + chr3.2:44553719-44553738 MS.gene027071:intron 35.0%
!!! TTGAGGTTTTGGAATGCTTT+TGG + chr3.2:44555325-44555344 MS.gene027071:CDS 35.0%
AACAACCACATACTCACAAC+CGG + chr3.2:44554764-44554783 MS.gene027071:CDS 40.0%
AAGATAAAACCATCAAGCCC+CGG + chr3.2:44553988-44554007 MS.gene027071:CDS 40.0%
ATGCGGCTCAAATGTGAAAA+CGG - chr3.2:44555397-44555416 None:intergenic 40.0%
CACAGAATCAGCTAACACTT+TGG + chr3.2:44555188-44555207 MS.gene027071:CDS 40.0%
CATACCGAATAGATCAGCTA+TGG + chr3.2:44553749-44553768 MS.gene027071:CDS 40.0%
CCCAACTTACAGATGTGATA+GGG - chr3.2:44554508-44554527 None:intergenic 40.0%
CCCTATCACATCTGTAAGTT+GGG + chr3.2:44554505-44554524 MS.gene027071:CDS 40.0%
CTCATTCTTGTTCCACAACA+GGG - chr3.2:44555140-44555159 None:intergenic 40.0%
CTGCAGTTGAGAACTTTGAA+AGG + chr3.2:44554707-44554726 MS.gene027071:intron 40.0%
GTGGGTATTCCAAAACTTGA+TGG - chr3.2:44555071-44555090 None:intergenic 40.0%
GTTGTGGAACAAGAATGAGA+GGG + chr3.2:44555141-44555160 MS.gene027071:CDS 40.0%
TCAAGCCAATGCCAATATGA+CGG - chr3.2:44554541-44554560 None:intergenic 40.0%
TCGGTATGAATCTATCCAAC+TGG - chr3.2:44553737-44553756 None:intergenic 40.0%
TCTCATTCTTGTTCCACAAC+AGG - chr3.2:44555141-44555160 None:intergenic 40.0%
TGAGAGAAGAAATCAACTGG+CGG - chr3.2:44553939-44553958 None:intergenic 40.0%
TGTTGTGGAACAAGAATGAG+AGG + chr3.2:44555140-44555159 MS.gene027071:CDS 40.0%
TTCCTCTTCAGGAACACTTA+CGG + chr3.2:44553521-44553540 MS.gene027071:CDS 40.0%
TTGATTATCATTCCCTCCAC+TGG - chr3.2:44554912-44554931 None:intergenic 40.0%
TTTCGATTATGCGCACTACA+TGG + chr3.2:44553773-44553792 MS.gene027071:CDS 40.0%
! AGTTTGCGGATTGAAATGGT+CGG + chr3.2:44554868-44554887 MS.gene027071:CDS 40.0%
! CAGTTGAGAACTTTGAAAGG+TGG + chr3.2:44554710-44554729 MS.gene027071:intron 40.0%
! GAGAAGTTTGCGGATTGAAA+TGG + chr3.2:44554864-44554883 MS.gene027071:CDS 40.0%
! GCGATGAAACCATCAAGTTT+TGG + chr3.2:44555059-44555078 MS.gene027071:CDS 40.0%
! TCAAACACGTTTTCCTCTTC+AGG + chr3.2:44553510-44553529 MS.gene027071:CDS 40.0%
!! ACGTGTTTGAGTTTTGATGG+CGG - chr3.2:44553500-44553519 None:intergenic 40.0%
!! GGGATAGAAGTACTTCAACA+AGG + chr3.2:44554942-44554961 MS.gene027071:CDS 40.0%
!! GTTACCGTTGATGATGAAGA+TGG + chr3.2:44554482-44554501 MS.gene027071:CDS 40.0%
!! TTGTTTTTCAGACCTCTGAG+AGG + chr3.2:44554324-44554343 MS.gene027071:intron 40.0%
!!! AAGTTTTGGAATACCCACAC+AGG + chr3.2:44555073-44555092 MS.gene027071:CDS 40.0%
AATTCTACCATCCATCCCTC+CGG - chr3.2:44554786-44554805 None:intergenic 45.0%
ACACCTGAGGAATAATTCGC+CGG - chr3.2:44554010-44554029 None:intergenic 45.0%
ACTGAAGGGGCTAAAGCTAA+AGG + chr3.2:44553798-44553817 MS.gene027071:CDS 45.0%
AGCATCCAATATCCTCTCAG+AGG - chr3.2:44554339-44554358 None:intergenic 45.0%
AGGGCCATCTTCATCATCAA+CGG - chr3.2:44554489-44554508 None:intergenic 45.0%
AGGGGCTAAAGCTAAAGGTA+AGG + chr3.2:44553803-44553822 MS.gene027071:CDS 45.0%
ATTGGATGCTCCAGACATTG+TGG + chr3.2:44554349-44554368 MS.gene027071:CDS 45.0%
CAGTAGCTAGCAAATTCCCT+TGG - chr3.2:44555027-44555046 None:intergenic 45.0%
CTGCAGTAAAAGCTCTTGCT+TGG + chr3.2:44554993-44555012 MS.gene027071:CDS 45.0%
GCCCAACTTACAGATGTGAT+AGG - chr3.2:44554509-44554528 None:intergenic 45.0%
GCCCTATCACATCTGTAAGT+TGG + chr3.2:44554504-44554523 MS.gene027071:CDS 45.0%
GCTAGCAAATTCCCTTGGAA+AGG - chr3.2:44555022-44555041 None:intergenic 45.0%
GCTTGAACTCAGTTGACACT+GGG + chr3.2:44555101-44555120 MS.gene027071:CDS 45.0%
GTGAAGATGGCAGAACTCAA+TGG + chr3.2:44555226-44555245 MS.gene027071:CDS 45.0%
TAGCTTCCTGTAAGCTTCTC+TGG - chr3.2:44553853-44553872 None:intergenic 45.0%
TCTGCCATCTTCACCATTGA+AGG - chr3.2:44555220-44555239 None:intergenic 45.0%
TGCTTGAACTCAGTTGACAC+TGG + chr3.2:44555100-44555119 MS.gene027071:CDS 45.0%
TTCCTGTAAGCTTCTCTGGA+AGG - chr3.2:44553849-44553868 None:intergenic 45.0%
! CGGATGAAACCTTGAGGTTT+TGG + chr3.2:44555314-44555333 MS.gene027071:CDS 45.0%
! GAACTTTGAAAGGTGGGCAT+AGG + chr3.2:44554717-44554736 MS.gene027071:CDS 45.0%
! TCAGACCTCTGAGAGGATAT+TGG + chr3.2:44554331-44554350 MS.gene027071:intron 45.0%
!! AACGGTAACGAGTTCTGAAG+TGG - chr3.2:44554471-44554490 None:intergenic 45.0%
!! ACAACTCTGAAGTGCAGCTA+TGG + chr3.2:44554561-44554580 MS.gene027071:CDS 45.0%
!! CAACTCTGAAGTGCAGCTAT+GGG + chr3.2:44554562-44554581 MS.gene027071:CDS 45.0%
!! CAAGGGAATTTGCTAGCTAC+TGG + chr3.2:44555025-44555044 MS.gene027071:CDS 45.0%
!! GCAGCTTTTGTTGCTACTTC+TGG - chr3.2:44555355-44555374 None:intergenic 45.0%
!! TTGCTTGGTGTCCTTTCCAA+GGG + chr3.2:44555008-44555027 MS.gene027071:CDS 45.0%
!!! ATATTTTATCATTATTATTT+TGG + chr3.2:44554079-44554098 MS.gene027071:intron 5.0%
AACCACATACTCACAACCGG+AGG + chr3.2:44554767-44554786 MS.gene027071:CDS 50.0%
AAGAAATCAACTGGCGGCGT+AGG - chr3.2:44553933-44553952 None:intergenic 50.0%
AATAATTCGCCGGGGCTTGA+TGG - chr3.2:44554000-44554019 None:intergenic 50.0%
ACCACATACTCACAACCGGA+GGG + chr3.2:44554768-44554787 MS.gene027071:CDS 50.0%
ACCTGAGGAATAATTCGCCG+GGG - chr3.2:44554008-44554027 None:intergenic 50.0%
AGTTCAAGCATGCACCTGTG+TGG - chr3.2:44555090-44555109 None:intergenic 50.0%
ATGCCAATATGACGGCCATC+AGG - chr3.2:44554533-44554552 None:intergenic 50.0%
CACCTGAGGAATAATTCGCC+GGG - chr3.2:44554009-44554028 None:intergenic 50.0%
CGCACTACATGGTGACTGAA+GGG + chr3.2:44553784-44553803 MS.gene027071:CDS 50.0%
CTCAGGTATGTTCCCTGTTG+TGG + chr3.2:44555125-44555144 MS.gene027071:CDS 50.0%
CTCCGTAAGTGTTCCTGAAG+AGG - chr3.2:44553526-44553545 None:intergenic 50.0%
CTCCTTCCAGAGAAGCTTAC+AGG + chr3.2:44553844-44553863 MS.gene027071:CDS 50.0%
CTTCAACAAGGTGGCTTCAC+AGG + chr3.2:44554954-44554973 MS.gene027071:CDS 50.0%
GATGGCCGTCATATTGGCAT+TGG + chr3.2:44554533-44554552 MS.gene027071:CDS 50.0%
GCACTACATGGTGACTGAAG+GGG + chr3.2:44553785-44553804 MS.gene027071:CDS 50.0%
GTCTACAATTGGCCAGTGGA+GGG + chr3.2:44554897-44554916 MS.gene027071:CDS 50.0%
GTTCAAGCATGCACCTGTGT+GGG - chr3.2:44555089-44555108 None:intergenic 50.0%
TCTGGTCTACAATTGGCCAG+TGG + chr3.2:44554893-44554912 MS.gene027071:CDS 50.0%
TTGCCACTGTCCAACCATCT+GGG - chr3.2:44555285-44555304 None:intergenic 50.0%
! AACGGCTCAGCTCTTGCTTT+TGG - chr3.2:44555379-44555398 None:intergenic 50.0%
! GGATTGAAATGGTCGGCTTC+TGG + chr3.2:44554875-44554894 MS.gene027071:CDS 50.0%
! GTCGGCTTCTGGTCTACAAT+TGG + chr3.2:44554886-44554905 MS.gene027071:CDS 50.0%
! TCTGTAAGTTGGGCTCCTGA+TGG + chr3.2:44554515-44554534 MS.gene027071:CDS 50.0%
! TGGAAGGAGAGCACACTTGT+GGG - chr3.2:44553833-44553852 None:intergenic 50.0%
!! AATTTGCTAGCTACTGGCGG+AGG + chr3.2:44555031-44555050 MS.gene027071:CDS 50.0%
!! CTTGCTTGGTGTCCTTTCCA+AGG + chr3.2:44555007-44555026 MS.gene027071:CDS 50.0%
!! GGGAATTTGCTAGCTACTGG+CGG + chr3.2:44555028-44555047 MS.gene027071:CDS 50.0%
AAATCAACTGGCGGCGTAGG+TGG - chr3.2:44553930-44553949 None:intergenic 55.0%
AGCGAGTAGGGTCTTTGGCA+TGG + chr3.2:44554741-44554760 MS.gene027071:CDS 55.0%
AGGGAGCTACTCAGCTCTCA+TGG + chr3.2:44555160-44555179 MS.gene027071:CDS 55.0%
CACACACACACACACACCTG+AGG - chr3.2:44554023-44554042 None:intergenic 55.0%
CATACTCACAACCGGAGGGA+TGG + chr3.2:44554772-44554791 MS.gene027071:CDS 55.0%
CTCAGTTGACACTGGGTCTC+AGG + chr3.2:44555108-44555127 MS.gene027071:CDS 55.0%
CTGCAGCGGATGAAACCTTG+AGG + chr3.2:44555308-44555327 MS.gene027071:CDS 55.0%
GCGCACTACATGGTGACTGA+AGG + chr3.2:44553783-44553802 MS.gene027071:CDS 55.0%
GCTCCTGATGGCCGTCATAT+TGG + chr3.2:44554527-44554546 MS.gene027071:CDS 55.0%
GGGCATGACCGAGAAGTTTG+CGG + chr3.2:44554854-44554873 MS.gene027071:CDS 55.0%
GGTCTACAATTGGCCAGTGG+AGG + chr3.2:44554896-44554915 MS.gene027071:CDS 55.0%
GTTGCCACTGTCCAACCATC+TGG - chr3.2:44555286-44555305 None:intergenic 55.0%
TAGGCAGCGAGTAGGGTCTT+TGG + chr3.2:44554736-44554755 MS.gene027071:CDS 55.0%
TCCCTCCGGTTGTGAGTATG+TGG - chr3.2:44554772-44554791 None:intergenic 55.0%
! CTGGAAGGAGAGCACACTTG+TGG - chr3.2:44553834-44553853 None:intergenic 55.0%
CATATGGCGCAGAGCCCAGA+TGG + chr3.2:44555268-44555287 MS.gene027071:CDS 60.0%
CTCACAACCGGAGGGATGGA+TGG + chr3.2:44554776-44554795 MS.gene027071:CDS 60.0%
GACAGTGGCAACAGCTGCAG+CGG + chr3.2:44555294-44555313 MS.gene027071:CDS 60.0%
GAGCCCAGATGGTTGGACAG+TGG + chr3.2:44555279-44555298 MS.gene027071:CDS 60.0%
GCCCCGGCGAATTATTCCTC+AGG + chr3.2:44554004-44554023 MS.gene027071:CDS 60.0%
GTGGGCATAGGCAGCGAGTA+GGG + chr3.2:44554729-44554748 MS.gene027071:CDS 60.0%
CTAGCTACTGGCGGAGGCAG+TGG + chr3.2:44555037-44555056 MS.gene027071:CDS 65.0%
GGTGGGCATAGGCAGCGAGT+AGG + chr3.2:44554728-44554747 MS.gene027071:CDS 65.0%
TGGCGCAGAGCCCAGATGGT+TGG + chr3.2:44555272-44555291 MS.gene027071:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 44553472 44555423 44553472 ID=MS.gene027071
chr3.2 mRNA 44553472 44555423 44553472 ID=MS.gene027071.t1;Parent=MS.gene027071
chr3.2 exon 44553472 44553564 44553472 ID=MS.gene027071.t1.exon1;Parent=MS.gene027071.t1
chr3.2 CDS 44553472 44553564 44553472 ID=cds.MS.gene027071.t1;Parent=MS.gene027071.t1
chr3.2 exon 44553738 44554025 44553738 ID=MS.gene027071.t1.exon2;Parent=MS.gene027071.t1
chr3.2 CDS 44553738 44554025 44553738 ID=cds.MS.gene027071.t1;Parent=MS.gene027071.t1
chr3.2 exon 44554335 44554604 44554335 ID=MS.gene027071.t1.exon3;Parent=MS.gene027071.t1
chr3.2 CDS 44554335 44554604 44554335 ID=cds.MS.gene027071.t1;Parent=MS.gene027071.t1
chr3.2 exon 44554713 44555423 44554713 ID=MS.gene027071.t1.exon4;Parent=MS.gene027071.t1
chr3.2 CDS 44554713 44555423 44554713 ID=cds.MS.gene027071.t1;Parent=MS.gene027071.t1
Gene Sequence

>MS.gene027071

ATGGCTTCAGGTTCTTTGAGTTCTTCCGCCATCAAAACTCAAACACGTTTTCCTCTTCAGGAACACTTACGGAGAAAGACTTCAAATGAAAATGTAAGAAATTTTTTCATTATTAGGGTTTCAAACTTCCAATGTAATTCTATTTTGAAAAAGAATGAATTTTGAAACTATGTCATGATAACTAACTAGGTACTTTATTGTGAGAATTTCTTTATAAAAATTAAGTAGTTTATTAATTATTTGATGTTTGATTTGTTTGTGACCAGTTGGATAGATTCATACCGAATAGATCAGCTATGGATTTCGATTATGCGCACTACATGGTGACTGAAGGGGCTAAAGCTAAAGGTAAGGAAAACCCACAAGTGTGCTCTCCTTCCAGAGAAGCTTACAGGAAGCTACTTGCAGAAGCTTTAAACATGAACAGGACCAGAATTCTAGCTTTCAAAAACAAGCCACCTACGCCGCCAGTTGATTTCTTCTCTCATGAAATCATTACTTCATCAATTCTTCGACAAGATAAAACCATCAAGCCCCGGCGAATTATTCCTCAGGTGTGTGTGTGTGTGTGTGTGTGTTTCTTAATGATATCTAATTCTTATTTCATATATTTTATCATTATTATTTTGGTTGCATGAACTCTAGTTCAAACGGCAAAAGTCCGATTTTAAAATTTTGCACTTGATCAGTTTTTGAAAATCAAGTGGGTCTGAGTTGTTTTCTTAATAGTTTGTATGGTGTGTGAAATCACAATAGTTTGCAATCTTGTTCTAGTTGATTTGTTGGTTATCTGATTTGAAAATTTTGAACTTTGGTTTTCTTAATTCTTAGCTGAAAGTGTTGATTGATATGTTGTTTTTCAGACCTCTGAGAGGATATTGGATGCTCCAGACATTGTGGATGACTATTACCTCAATTTACTAGATTGGGGAAGCGCCAATGTTCTTGCAATAGCATTAGGAAACACATTGTATTTGTGGGATGCATCAAACGGTTCCACTTCAGAACTCGTTACCGTTGATGATGAAGATGGCCCTATCACATCTGTAAGTTGGGCTCCTGATGGCCGTCATATTGGCATTGGCTTGAACAACTCTGAAGTGCAGCTATGGGATACAGCTTCATATAAACAGGTTTTATACTTATCTGGTTTACCCTTTAAACGATACATTATTATGAGCTATTCAGTATCCATTTCCTACTACTAGTTTTCTAATATTATTCATGTTATGTTTCTGCAGTTGAGAACTTTGAAAGGTGGGCATAGGCAGCGAGTAGGGTCTTTGGCATGGAACAACCACATACTCACAACCGGAGGGATGGATGGTAGAATTATCAATAATGATGTAAGAATTAGAGCACACATTGTTGAAACATACAGAGGGCATGACCGAGAAGTTTGCGGATTGAAATGGTCGGCTTCTGGTCTACAATTGGCCAGTGGAGGGAATGATAATCAACTTTACATCTGGGATAGAAGTACTTCAACAAGGTGGCTTCACAGGCTTGAAGATCATACATCTGCAGTAAAAGCTCTTGCTTGGTGTCCTTTCCAAGGGAATTTGCTAGCTACTGGCGGAGGCAGTGGCGATGAAACCATCAAGTTTTGGAATACCCACACAGGTGCATGCTTGAACTCAGTTGACACTGGGTCTCAGGTATGTTCCCTGTTGTGGAACAAGAATGAGAGGGAGCTACTCAGCTCTCATGGTTTTACACAGAATCAGCTAACACTTTGGAAATATCCTTCAATGGTGAAGATGGCAGAACTCAATGGTCACACTTCAAGAGTTCTTCATATGGCGCAGAGCCCAGATGGTTGGACAGTGGCAACAGCTGCAGCGGATGAAACCTTGAGGTTTTGGAATGCTTTTGGCACTCCAGAAGTAGCAACAAAAGCTGCACCAAAAGCAAGAGCTGAGCCGTTTTCACATTTGAGCCGCATTCGATAA
Protein sequence

>MS.gene027071.t1

MASGSLSSSAIKTQTRFPLQEHLRRKTSNENLDRFIPNRSAMDFDYAHYMVTEGAKAKGKENPQVCSPSREAYRKLLAEALNMNRTRILAFKNKPPTPPVDFFSHEIITSSILRQDKTIKPRRIIPQTSERILDAPDIVDDYYLNLLDWGSANVLAIALGNTLYLWDASNGSTSELVTVDDEDGPITSVSWAPDGRHIGIGLNNSEVQLWDTASYKQLRTLKGGHRQRVGSLAWNNHILTTGGMDGRIINNDVRIRAHIVETYRGHDREVCGLKWSASGLQLASGGNDNQLYIWDRSTSTRWLHRLEDHTSAVKALAWCPFQGNLLATGGGSGDETIKFWNTHTGACLNSVDTGSQVCSLLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELNGHTSRVLHMAQSPDGWTVATAAADETLRFWNAFGTPEVATKAAPKARAEPFSHLSRIR