AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene027074


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027074.t1 MTR_3g051690 94.159 428 19 2 1 422 32 459 0.0 840
MS.gene027074.t1 MTR_5g008010 90.164 427 33 4 1 422 32 454 0.0 795
MS.gene027074.t1 MTR_7g106870 74.592 429 98 6 1 422 33 457 0.0 667
MS.gene027074.t1 MTR_7g451830 67.599 429 115 8 2 422 19 431 0.0 568
MS.gene027074.t1 MTR_7g047640 67.599 429 115 8 2 422 19 431 0.0 568
MS.gene027074.t1 MTR_7g057540 64.884 430 125 8 1 422 15 426 0.0 533
MS.gene027074.t1 MTR_7g055590 64.802 429 125 8 1 421 15 425 0.0 531
MS.gene027074.t1 MTR_7g053100 62.005 429 139 7 1 422 25 436 0.0 517
MS.gene027074.t1 MTR_7g034625 70.219 319 88 2 97 408 13 331 9.02e-166 469
MS.gene027074.t1 MTR_2g100540 50.580 431 158 12 2 422 12 397 3.13e-127 373
MS.gene027074.t1 MTR_2g100460 56.560 343 135 5 80 420 52 382 2.48e-126 370
MS.gene027074.t1 MTR_2g060710 44.282 411 207 8 2 398 26 428 2.02e-119 355
MS.gene027074.t1 MTR_3g067940 44.286 420 212 7 2 409 57 466 4.33e-116 348
MS.gene027074.t1 MTR_4g102510 43.198 419 206 7 2 401 51 456 1.15e-110 333
MS.gene027074.t1 MTR_4g415070 52.941 68 32 0 347 414 57 124 1.04e-16 80.9
MS.gene027074.t1 MTR_1g054300 26.250 320 175 11 147 419 114 419 1.71e-15 78.6
MS.gene027074.t1 MTR_1g054300 26.119 268 170 11 134 394 235 481 1.99e-14 75.5
MS.gene027074.t1 MTR_2g012630 27.397 219 148 8 127 342 35 245 2.78e-15 78.6
MS.gene027074.t1 MTR_2g012630 27.397 219 148 8 127 342 35 245 3.07e-15 78.6
MS.gene027074.t1 MTR_6g004040 28.326 233 153 10 113 339 19 243 6.04e-15 77.4
MS.gene027074.t1 MTR_5g016370 23.693 287 163 8 116 394 312 550 1.26e-14 76.3
MS.gene027074.t1 MTR_5g016350 22.997 287 179 7 110 395 230 475 5.99e-13 70.9
MS.gene027074.t1 MTR_5g016350 22.997 287 179 7 110 395 294 539 6.26e-13 70.9
MS.gene027074.t1 MTR_4g095058 24.752 303 192 13 120 395 241 534 5.72e-12 67.8
MS.gene027074.t1 MTR_4g095058 24.382 283 168 11 116 395 293 532 5.96e-12 67.8
MS.gene027074.t1 MTR_3g106080 24.351 308 191 10 128 403 326 623 9.51e-12 67.4
MS.gene027074.t1 MTR_7g086360 23.415 205 150 4 193 395 53 252 2.44e-11 65.1
MS.gene027074.t1 MTR_1g049000 39.362 94 47 3 173 257 8 100 4.71e-11 62.0
MS.gene027074.t1 MTR_4g119620 22.581 248 177 7 155 394 81 321 5.12e-11 63.9
MS.gene027074.t1 MTR_5g022690 27.011 174 120 5 139 310 266 434 8.58e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027074.t1 AT4G33270 77.049 427 90 4 1 422 34 457 0.0 685
MS.gene027074.t1 AT4G33260 76.815 427 91 4 1 422 24 447 0.0 668
MS.gene027074.t1 AT4G33260 75.122 410 94 4 1 405 24 430 0.0 635
MS.gene027074.t1 AT5G27570 68.765 429 119 6 1 422 30 450 0.0 590
MS.gene027074.t1 AT5G27080 67.366 429 125 6 1 422 22 442 0.0 583
MS.gene027074.t1 AT5G26900 66.822 428 128 5 1 422 25 444 0.0 572
MS.gene027074.t1 AT5G27945 61.725 371 122 5 68 422 62 428 2.25e-156 449
MS.gene027074.t1 AT4G22910 42.822 411 216 7 2 401 62 464 8.99e-113 339
MS.gene027074.t1 AT4G11920 42.118 425 212 8 2 407 53 462 1.83e-110 333
MS.gene027074.t1 AT5G13840 51.475 305 145 3 100 404 164 465 2.88e-110 333
MS.gene027074.t1 AT5G13840 51.475 305 145 3 100 404 164 465 2.88e-110 333
MS.gene027074.t1 AT1G11160 28.155 206 131 7 119 313 16 215 4.98e-16 80.9
MS.gene027074.t1 AT1G11160 28.155 206 131 7 119 313 16 215 5.38e-16 80.9
MS.gene027074.t1 AT1G11160 28.155 206 131 7 119 313 16 215 5.48e-16 80.9
MS.gene027074.t1 AT5G08390 29.060 234 136 10 109 339 37 243 1.12e-15 79.7
MS.gene027074.t1 AT1G11160 30.247 162 105 6 154 313 18 173 5.82e-15 77.8
MS.gene027074.t1 AT1G61210 26.339 224 142 8 111 319 6 221 1.55e-14 76.3
MS.gene027074.t1 AT1G61210 26.126 222 145 8 111 319 6 221 1.80e-14 76.3
MS.gene027074.t1 AT1G61210 26.339 224 142 8 111 319 6 221 1.85e-14 76.3
MS.gene027074.t1 AT5G52820 28.226 248 154 12 155 396 244 473 3.81e-14 74.3
MS.gene027074.t1 AT5G23430 28.774 212 138 9 113 319 19 222 1.53e-13 73.2
MS.gene027074.t1 AT5G23430 28.774 212 138 9 113 319 19 222 1.76e-13 73.2
MS.gene027074.t1 AT5G23430 28.774 212 138 9 113 319 19 222 1.76e-13 73.2
MS.gene027074.t1 AT5G25150 25.749 334 209 12 104 409 305 627 4.36e-13 71.6
MS.gene027074.t1 AT5G25150 25.749 334 209 12 104 409 305 627 4.58e-13 71.6
MS.gene027074.t1 AT2G32700 25.610 246 163 11 155 394 553 784 6.06e-13 71.2
MS.gene027074.t1 AT2G32700 25.610 246 163 11 155 394 574 805 6.47e-13 71.2
MS.gene027074.t1 AT2G32700 25.610 246 163 11 155 394 555 786 6.57e-13 71.2
MS.gene027074.t1 AT2G32700 25.610 246 163 11 155 394 555 786 6.57e-13 71.2
MS.gene027074.t1 AT2G32700 25.610 246 163 11 155 394 555 786 6.57e-13 71.2
MS.gene027074.t1 AT2G32700 25.610 246 163 11 155 394 555 786 6.57e-13 71.2
MS.gene027074.t1 AT2G32700 25.610 246 163 11 155 394 555 786 6.57e-13 71.2
MS.gene027074.t1 AT5G67320 25.000 284 165 12 116 395 330 569 2.19e-12 69.3
MS.gene027074.t1 AT3G49660 23.600 250 177 8 151 394 71 312 4.31e-12 67.4
MS.gene027074.t1 AT5G13480 31.319 182 115 7 131 309 241 415 1.17e-11 67.0
MS.gene027074.t1 AT5G13480 27.391 230 148 10 155 377 137 354 1.86e-11 66.6
MS.gene027074.t1 AT5G13480 31.319 182 115 7 131 309 218 392 1.19e-11 67.0
MS.gene027074.t1 AT5G13480 27.391 230 148 10 155 377 114 331 2.09e-11 66.2
MS.gene027074.t1 AT2G33340 26.042 192 134 5 207 395 236 422 1.25e-11 67.0
MS.gene027074.t1 AT2G33340 26.042 192 134 5 207 395 236 422 1.25e-11 67.0
MS.gene027074.t1 AT2G41500 25.203 246 134 8 155 398 342 539 1.37e-11 66.6
MS.gene027074.t1 AT2G41500 25.203 246 134 8 155 398 342 539 1.37e-11 66.6
MS.gene027074.t1 AT2G33340 26.042 192 134 5 207 395 236 422 1.44e-11 66.6
MS.gene027074.t1 AT5G13480 31.319 182 115 7 131 309 218 392 1.49e-11 66.6
MS.gene027074.t1 AT5G13480 27.391 230 148 10 155 377 114 331 2.46e-11 66.2
MS.gene027074.t1 AT5G13480 31.319 182 115 7 131 309 230 404 1.77e-11 66.6
MS.gene027074.t1 AT5G13480 27.391 230 148 10 155 377 126 343 2.72e-11 65.9
MS.gene027074.t1 AT1G04510 25.116 215 152 5 207 417 236 445 3.12e-11 65.5
MS.gene027074.t1 AT1G04510 25.116 215 152 5 207 417 236 445 3.32e-11 65.5
MS.gene027074.t1 AT4G02730 26.852 216 145 9 185 395 34 241 3.86e-11 64.3
MS.gene027074.t1 AT5G56130 23.786 206 113 5 232 395 16 219 7.04e-11 63.5

Find 126 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGATGAAACCTTGAGGTTT+TGG 0.193519 3.2:+44373471 MS.gene027074:CDS
TGACTATTACCTCAATTTAC+TGG 0.257532 3.2:+44372530 MS.gene027074:CDS
GTTGCCACTGTCCAACCATC+TGG 0.273358 3.2:-44373440 None:intergenic
TTACCTCAATTTACTGGATT+GGG 0.283267 3.2:+44372536 MS.gene027074:CDS
AATGTTCTTGCAATTGGATT+AGG 0.295419 3.2:+44372567 MS.gene027074:CDS
CTCCTTCCAGAGAAGCTTAC+AGG 0.301895 3.2:+44371998 MS.gene027074:CDS
ATGCGGCTCAAATGTGAAAA+TGG 0.324208 3.2:-44373551 None:intergenic
AGCGCCAATGTTCTTGCAAT+TGG 0.327966 3.2:+44372561 MS.gene027074:CDS
GTTCTTGAAAGCTAGAATTC+TGG 0.331154 3.2:-44372055 None:intergenic
GCAGACTTCTGAGAGGATAT+TGG 0.341248 3.2:+44372488 MS.gene027074:intron
ATGATAATCAACTTTACATC+TGG 0.350065 3.2:+44373078 MS.gene027074:CDS
AATGGCTCAACTCTTGCTTT+TGG 0.357983 3.2:-44373533 None:intergenic
GCGATGAAACCATCAAGTTT+TGG 0.364930 3.2:+44373216 MS.gene027074:CDS
GGATTGAAATGGTCAGCTTC+TGG 0.370788 3.2:+44373032 MS.gene027074:CDS
ATTACCTCAATTTACTGGAT+TGG 0.371678 3.2:+44372535 MS.gene027074:CDS
TAGCTTCCTGTAAGCTTCTC+TGG 0.375997 3.2:-44372004 None:intergenic
TCTCATTCTTGTTCCACAAC+AGG 0.376647 3.2:-44373295 None:intergenic
GCTCCTGATGGCCGTCATAT+TGG 0.389395 3.2:+44372684 MS.gene027074:CDS
ATTTCAATCCGCAAACTTCT+CGG 0.394694 3.2:-44373019 None:intergenic
AATAATTCGCCGGGGCTTGA+TGG 0.396021 3.2:-44372151 None:intergenic
CCCTATCACATCTGTAAGTT+GGG 0.396604 3.2:+44372662 MS.gene027074:CDS
TCTGCCATCTTCACCATTGA+AGG 0.397901 3.2:-44373374 None:intergenic
CTCAGTTGACACTGGGTCTC+AGG 0.408962 3.2:+44373265 MS.gene027074:CDS
TAGGAAACACATTGTATTTG+TGG 0.412235 3.2:+44372586 MS.gene027074:CDS
CAAGGGAATTTACTAGCTAC+TGG 0.417964 3.2:+44373182 MS.gene027074:CDS
GCCCTATCACATCTGTAAGT+TGG 0.420766 3.2:+44372661 MS.gene027074:CDS
CTCAGGTATGTTCCCTGTTG+TGG 0.426699 3.2:+44373282 MS.gene027074:CDS
TAATAGTCATCCACAATGTC+TGG 0.428065 3.2:-44372516 None:intergenic
GTGGGTATTCCAAAACTTGA+TGG 0.428833 3.2:-44373225 None:intergenic
TAGGCAGCGAGTAGGGTCTT+TGG 0.428851 3.2:+44372893 MS.gene027074:CDS
CAGAAGCTCTAAACATGAAC+AGG 0.436496 3.2:+44372031 MS.gene027074:CDS
AAATCCATAGCTGATCTATT+CGG 0.447023 3.2:-44371907 None:intergenic
GAGAAGTTTGCGGATTGAAA+TGG 0.447588 3.2:+44373021 MS.gene027074:CDS
CTTGCTTGGTGTCCTTTCCA+AGG 0.448593 3.2:+44373164 MS.gene027074:CDS
GCCCAACTTACAGATGTGAT+AGG 0.450468 3.2:-44372663 None:intergenic
GTCAGCTTCTGGTCTACAAT+TGG 0.451980 3.2:+44373043 MS.gene027074:CDS
AGGAAACACATTGTATTTGT+GGG 0.452538 3.2:+44372587 MS.gene027074:CDS
CTTCAACAAGGTGGCTTCAC+AGG 0.460645 3.2:+44373111 MS.gene027074:CDS
CTGCAGTAAAAGCGCTTGCT+TGG 0.476217 3.2:+44373150 MS.gene027074:CDS
CACAGAATCAGATAACACTT+TGG 0.480456 3.2:+44373345 MS.gene027074:CDS
TCATGAGAGAAGAAATCAAC+TGG 0.484334 3.2:-44372093 None:intergenic
ACAACTCTGAAGTGCAGCTA+TGG 0.484474 3.2:+44372718 MS.gene027074:CDS
GGATACAGCTTCAGATAGAC+AGG 0.484963 3.2:+44372740 MS.gene027074:CDS
ATGCCAATATGACGGCCATC+AGG 0.485428 3.2:-44372687 None:intergenic
CTAGCTACTGGCGGAGGCAG+TGG 0.487153 3.2:+44373194 MS.gene027074:CDS
CACTTCAAGAGTTCTTCATA+TGG 0.487383 3.2:+44373409 MS.gene027074:CDS
TTGATTATCATTCCCTCCAC+TGG 0.491219 3.2:-44373066 None:intergenic
TTGCCACTGTCCAACCATCT+GGG 0.492660 3.2:-44373439 None:intergenic
TGGAAGGAGAGCACACTTGT+GGG 0.493184 3.2:-44371984 None:intergenic
ACTTTGGAAATATCCTTCAA+TGG 0.495344 3.2:+44373361 MS.gene027074:CDS
GATGGCCGTCATATTGGCAT+TGG 0.495923 3.2:+44372690 MS.gene027074:CDS
ATATCCTTCAATGGTGAAGA+TGG 0.498891 3.2:+44373370 MS.gene027074:CDS
AACAACCACATACTCACAAC+CGG 0.499451 3.2:+44372921 MS.gene027074:CDS
TTGCTTGGTGTCCTTTCCAA+GGG 0.501380 3.2:+44373165 MS.gene027074:CDS
CGCACTACATGGTGACTGAA+GGG 0.507766 3.2:+44371938 MS.gene027074:CDS
CTGGAAGGAGAGCACACTTG+TGG 0.508404 3.2:-44371985 None:intergenic
AAGAAATCAACTGGCGGCGT+AGG 0.510142 3.2:-44372084 None:intergenic
GGGCATGACCGAGAAGTTTG+CGG 0.518071 3.2:+44373011 MS.gene027074:CDS
CTGCAGTTGAGAACTTTGAA+AGG 0.529944 3.2:+44372864 MS.gene027074:intron
GAACTTTGAAAGGTGGGCAT+AGG 0.530523 3.2:+44372874 MS.gene027074:CDS
GCCCCGGCGAATTATTCCTC+AGG 0.533857 3.2:+44372158 MS.gene027074:CDS
CTCATTCTTGTTCCACAACA+GGG 0.537252 3.2:-44373294 None:intergenic
ACACCTGAGGAATAATTCGC+CGG 0.542147 3.2:-44372161 None:intergenic
TGATAATCAACTTTACATCT+GGG 0.543770 3.2:+44373079 MS.gene027074:CDS
TTTCGATTATGCGCACTACA+TGG 0.544215 3.2:+44371927 MS.gene027074:CDS
TGCTTGAACTCAGTTGACAC+TGG 0.544299 3.2:+44373257 MS.gene027074:CDS
GACAGTGGCAACAGCTGCAG+CGG 0.545471 3.2:+44373451 MS.gene027074:CDS
AGGGAGCTACTCAGCTCTCA+TGG 0.545560 3.2:+44373317 MS.gene027074:CDS
TATTTGTGGGATGCATCAAA+CGG 0.551368 3.2:+44372600 MS.gene027074:CDS
AAATCAACTGGCGGCGTAGG+TGG 0.551699 3.2:-44372081 None:intergenic
CAACTCTGAAGTGCAGCTAT+GGG 0.552386 3.2:+44372719 MS.gene027074:CDS
TAATCCAATTGCAAGAACAT+TGG 0.554610 3.2:-44372565 None:intergenic
CTCACAACCGGAGGGATGGA+TGG 0.555824 3.2:+44372933 MS.gene027074:CDS
CATATGGCGCAGAGCCCAGA+TGG 0.555918 3.2:+44373425 MS.gene027074:CDS
GTGGGCATAGGCAGCGAGTA+GGG 0.557831 3.2:+44372886 MS.gene027074:CDS
CACCTGAGGAATAATTCGCC+GGG 0.559324 3.2:-44372160 None:intergenic
AGTTGAGAACTTTGAAAGGT+GGG 0.559397 3.2:+44372868 MS.gene027074:intron
TGGCGCAGAGCCCAGATGGT+TGG 0.562028 3.2:+44373429 MS.gene027074:CDS
TACCTCAATTTACTGGATTG+GGG 0.562441 3.2:+44372537 MS.gene027074:CDS
GCTAGTAAATTCCCTTGGAA+AGG 0.568517 3.2:-44373176 None:intergenic
GTCTACAATTGGCCAGTGGA+GGG 0.570881 3.2:+44373054 MS.gene027074:CDS
GTGAAGATGGCAGAACTCAA+TGG 0.571074 3.2:+44373383 MS.gene027074:CDS
GCGCACTACATGGTGACTGA+AGG 0.571364 3.2:+44371937 MS.gene027074:CDS
CATACTCACAACCGGAGGGA+TGG 0.571933 3.2:+44372929 MS.gene027074:CDS
CAGTTGAGAACTTTGAAAGG+TGG 0.572101 3.2:+44372867 MS.gene027074:intron
GGTCTACAATTGGCCAGTGG+AGG 0.575013 3.2:+44373053 MS.gene027074:CDS
TTCCCCAATCCAGTAAATTG+AGG 0.576674 3.2:-44372539 None:intergenic
TCCCTCCGGTTGTGAGTATG+TGG 0.579028 3.2:-44372926 None:intergenic
TTCCTGTAAGCTTCTCTGGA+AGG 0.579286 3.2:-44372000 None:intergenic
ACTGAAGGGGCTAAAGCTAA+AGG 0.581037 3.2:+44371952 MS.gene027074:CDS
AGGGGCTAAAGCTAAAGGTA+AGG 0.581254 3.2:+44371957 MS.gene027074:CDS
TCTGTAAGTTGGGCTCCTGA+TGG 0.584539 3.2:+44372672 MS.gene027074:CDS
CCCAACTTACAGATGTGATA+GGG 0.585245 3.2:-44372662 None:intergenic
AATTCTACCATCCATCCCTC+CGG 0.585408 3.2:-44372940 None:intergenic
AAAAGCATTCCAAAACCTCA+AGG 0.587395 3.2:-44373480 None:intergenic
TGCATCAAACGGTTCCACTT+CGG 0.590792 3.2:+44372611 MS.gene027074:CDS
GGTGGGCATAGGCAGCGAGT+AGG 0.596714 3.2:+44372885 MS.gene027074:CDS
CATACCGAATAGATCAGCTA+TGG 0.601151 3.2:+44371903 MS.gene027074:CDS
AGCGAGTAGGGTCTTTGGCA+TGG 0.601597 3.2:+44372898 MS.gene027074:CDS
AACGGTAACAAGTTCCGAAG+TGG 0.605642 3.2:-44372625 None:intergenic
GTTACCGTTGATGATGAAGA+TGG 0.607070 3.2:+44372639 MS.gene027074:CDS
ATTGGATGCTCCAGACATTG+TGG 0.612151 3.2:+44372506 MS.gene027074:CDS
AAGATAAAACCATCAAGCCC+CGG 0.617625 3.2:+44372142 MS.gene027074:CDS
TGTTGTGGAACAAGAATGAG+AGG 0.618210 3.2:+44373297 MS.gene027074:CDS
AGGGCCATCTTCATCATCAA+CGG 0.626287 3.2:-44372643 None:intergenic
GCTTGAACTCAGTTGACACT+GGG 0.627877 3.2:+44373258 MS.gene027074:CDS
CAGTAGCTAGTAAATTCCCT+TGG 0.629888 3.2:-44373181 None:intergenic
AATTTACTAGCTACTGGCGG+AGG 0.633586 3.2:+44373188 MS.gene027074:CDS
TCAAGCCAATGCCAATATGA+CGG 0.636859 3.2:-44372695 None:intergenic
GAGCCCAGATGGTTGGACAG+TGG 0.641101 3.2:+44373436 MS.gene027074:CDS
ATGTTACTGCTTATCGAATG+CGG 0.643437 3.2:-44373568 None:intergenic
ACCACATACTCACAACCGGA+GGG 0.650856 3.2:+44372925 MS.gene027074:CDS
GCACTACATGGTGACTGAAG+GGG 0.656801 3.2:+44371939 MS.gene027074:CDS
GTTCAAGCATGCACCTGTGT+GGG 0.668846 3.2:-44373243 None:intergenic
CTGCAGCGGATGAAACCTTG+AGG 0.678181 3.2:+44373465 MS.gene027074:CDS
AGTTCAAGCATGCACCTGTG+TGG 0.678713 3.2:-44373244 None:intergenic
TCTGGTCTACAATTGGCCAG+TGG 0.684216 3.2:+44373050 MS.gene027074:CDS
ACATTGTTGAAACATACAGA+GGG 0.688874 3.2:+44372991 MS.gene027074:CDS
AACCACATACTCACAACCGG+AGG 0.695066 3.2:+44372924 MS.gene027074:CDS
TGAGAGAAGAAATCAACTGG+CGG 0.700989 3.2:-44372090 None:intergenic
CACATTGTTGAAACATACAG+AGG 0.702329 3.2:+44372990 MS.gene027074:CDS
GGGATAGAAGTACTTCAACA+AGG 0.702662 3.2:+44373099 MS.gene027074:CDS
GGGAATTTACTAGCTACTGG+CGG 0.715639 3.2:+44373185 MS.gene027074:CDS
GTTGTGGAACAAGAATGAGA+GGG 0.727155 3.2:+44373298 MS.gene027074:CDS
ACCTGAGGAATAATTCGCCG+GGG 0.733838 3.2:-44372159 None:intergenic
ATAGAAGTACTTCAACAAGG+TGG 0.753913 3.2:+44373102 MS.gene027074:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTCAATTCTTTTTAAAT+GGG + chr3.2:44372294-44372313 MS.gene027074:intron 15.0%
!!! TTTTCTCAATTCTTTTTAAA+TGG + chr3.2:44372293-44372312 MS.gene027074:intron 15.0%
!! AATATTAGAAAACTAGTAGT+AGG - chr3.2:44372829-44372848 None:intergenic 20.0%
!!! ATAATAATGTATCGATTGAA+GGG - chr3.2:44372786-44372805 None:intergenic 20.0%
!!! ATTAGTTTTTGAAAATCAAG+TGG + chr3.2:44372260-44372279 MS.gene027074:intron 20.0%
!!! TTAGTTTTTGAAAATCAAGT+GGG + chr3.2:44372261-44372280 MS.gene027074:intron 20.0%
! ATGATAATCAACTTTACATC+TGG + chr3.2:44373078-44373097 MS.gene027074:CDS 25.0%
! TGATAATCAACTTTACATCT+GGG + chr3.2:44373079-44373098 MS.gene027074:CDS 25.0%
!! CACAAAATTGCAAAATCTTT+TGG - chr3.2:44372445-44372464 None:intergenic 25.0%
!! GATTTGAGAATTTTGAACTT+CGG + chr3.2:44372380-44372399 MS.gene027074:intron 25.0%
!!! CATAATAATGTATCGATTGA+AGG - chr3.2:44372787-44372806 None:intergenic 25.0%
!!! TCTTGTTCTAGTTAATTTGT+TGG + chr3.2:44372351-44372370 MS.gene027074:intron 25.0%
AAATCCATAGCTGATCTATT+CGG - chr3.2:44371910-44371929 None:intergenic 30.0%
AATGTTCTTGCAATTGGATT+AGG + chr3.2:44372567-44372586 MS.gene027074:CDS 30.0%
ACATTGTTGAAACATACAGA+GGG + chr3.2:44372991-44373010 MS.gene027074:CDS 30.0%
AGAAAACTAGTAGTAGGAAA+TGG - chr3.2:44372823-44372842 None:intergenic 30.0%
AGGAAACACATTGTATTTGT+GGG + chr3.2:44372587-44372606 MS.gene027074:CDS 30.0%
ATTACCTCAATTTACTGGAT+TGG + chr3.2:44372535-44372554 MS.gene027074:CDS 30.0%
TAATCCAATTGCAAGAACAT+TGG - chr3.2:44372568-44372587 None:intergenic 30.0%
TAGGAAACACATTGTATTTG+TGG + chr3.2:44372586-44372605 MS.gene027074:CDS 30.0%
TGACTATTACCTCAATTTAC+TGG + chr3.2:44372530-44372549 MS.gene027074:CDS 30.0%
TTACCTCAATTTACTGGATT+GGG + chr3.2:44372536-44372555 MS.gene027074:CDS 30.0%
! ACTTTGGAAATATCCTTCAA+TGG + chr3.2:44373361-44373380 MS.gene027074:CDS 30.0%
!! AGACAGGTTTTATACTTATC+TGG + chr3.2:44372756-44372775 MS.gene027074:intron 30.0%
!! TCTTTTTAAATGGGCTTGTT+TGG + chr3.2:44372303-44372322 MS.gene027074:intron 30.0%
ATATCCTTCAATGGTGAAGA+TGG + chr3.2:44373370-44373389 MS.gene027074:CDS 35.0%
ATTTCAATCCGCAAACTTCT+CGG - chr3.2:44373022-44373041 None:intergenic 35.0%
CACAGAATCAGATAACACTT+TGG + chr3.2:44373345-44373364 MS.gene027074:CDS 35.0%
CACATTGTTGAAACATACAG+AGG + chr3.2:44372990-44373009 MS.gene027074:CDS 35.0%
CACTTCAAGAGTTCTTCATA+TGG + chr3.2:44373409-44373428 MS.gene027074:CDS 35.0%
GTTCTTGAAAGCTAGAATTC+TGG - chr3.2:44372058-44372077 None:intergenic 35.0%
TAATAGTCATCCACAATGTC+TGG - chr3.2:44372519-44372538 None:intergenic 35.0%
TACCTCAATTTACTGGATTG+GGG + chr3.2:44372537-44372556 MS.gene027074:CDS 35.0%
TATTTGTGGGATGCATCAAA+CGG + chr3.2:44372600-44372619 MS.gene027074:CDS 35.0%
TCATGAGAGAAGAAATCAAC+TGG - chr3.2:44372096-44372115 None:intergenic 35.0%
! AGTTGAGAACTTTGAAAGGT+GGG + chr3.2:44372868-44372887 MS.gene027074:intron 35.0%
!! AAAAGCATTCCAAAACCTCA+AGG - chr3.2:44373483-44373502 None:intergenic 35.0%
!! ATAGAAGTACTTCAACAAGG+TGG + chr3.2:44373102-44373121 MS.gene027074:CDS 35.0%
!!! TTGAGGTTTTGGAATGCTTT+TGG + chr3.2:44373482-44373501 MS.gene027074:CDS 35.0%
AACAACCACATACTCACAAC+CGG + chr3.2:44372921-44372940 MS.gene027074:CDS 40.0%
AAGATAAAACCATCAAGCCC+CGG + chr3.2:44372142-44372161 MS.gene027074:CDS 40.0%
ATGCGGCTCAAATGTGAAAA+TGG - chr3.2:44373554-44373573 None:intergenic 40.0%
CAAGGGAATTTACTAGCTAC+TGG + chr3.2:44373182-44373201 MS.gene027074:CDS 40.0%
CAGTAGCTAGTAAATTCCCT+TGG - chr3.2:44373184-44373203 None:intergenic 40.0%
CATACCGAATAGATCAGCTA+TGG + chr3.2:44371903-44371922 MS.gene027074:CDS 40.0%
CCCAACTTACAGATGTGATA+GGG - chr3.2:44372665-44372684 None:intergenic 40.0%
CCCTATCACATCTGTAAGTT+GGG + chr3.2:44372662-44372681 MS.gene027074:CDS 40.0%
CTCATTCTTGTTCCACAACA+GGG - chr3.2:44373297-44373316 None:intergenic 40.0%
CTGCAGTTGAGAACTTTGAA+AGG + chr3.2:44372864-44372883 MS.gene027074:intron 40.0%
GCTAGTAAATTCCCTTGGAA+AGG - chr3.2:44373179-44373198 None:intergenic 40.0%
GTGGGTATTCCAAAACTTGA+TGG - chr3.2:44373228-44373247 None:intergenic 40.0%
GTTGTGGAACAAGAATGAGA+GGG + chr3.2:44373298-44373317 MS.gene027074:CDS 40.0%
TCAAGCCAATGCCAATATGA+CGG - chr3.2:44372698-44372717 None:intergenic 40.0%
TCTCATTCTTGTTCCACAAC+AGG - chr3.2:44373298-44373317 None:intergenic 40.0%
TGAGAGAAGAAATCAACTGG+CGG - chr3.2:44372093-44372112 None:intergenic 40.0%
TGTTGTGGAACAAGAATGAG+AGG + chr3.2:44373297-44373316 MS.gene027074:CDS 40.0%
TTCCCCAATCCAGTAAATTG+AGG - chr3.2:44372542-44372561 None:intergenic 40.0%
TTGATTATCATTCCCTCCAC+TGG - chr3.2:44373069-44373088 None:intergenic 40.0%
TTTCGATTATGCGCACTACA+TGG + chr3.2:44371927-44371946 MS.gene027074:CDS 40.0%
! AATGGCTCAACTCTTGCTTT+TGG - chr3.2:44373536-44373555 None:intergenic 40.0%
! CAGTTGAGAACTTTGAAAGG+TGG + chr3.2:44372867-44372886 MS.gene027074:intron 40.0%
! GAGAAGTTTGCGGATTGAAA+TGG + chr3.2:44373021-44373040 MS.gene027074:CDS 40.0%
! GCGATGAAACCATCAAGTTT+TGG + chr3.2:44373216-44373235 MS.gene027074:CDS 40.0%
!! CAGAAGCTCTAAACATGAAC+AGG + chr3.2:44372031-44372050 MS.gene027074:CDS 40.0%
!! GCAGCTTTTGTTGTAACTTC+TGG - chr3.2:44373512-44373531 None:intergenic 40.0%
!! GGGATAGAAGTACTTCAACA+AGG + chr3.2:44373099-44373118 MS.gene027074:CDS 40.0%
!! GTTACCGTTGATGATGAAGA+TGG + chr3.2:44372639-44372658 MS.gene027074:CDS 40.0%
!! TTGTTTTGCAGACTTCTGAG+AGG + chr3.2:44372481-44372500 MS.gene027074:intron 40.0%
!!! AAGTTTTGGAATACCCACAC+AGG + chr3.2:44373230-44373249 MS.gene027074:CDS 40.0%
AACGGTAACAAGTTCCGAAG+TGG - chr3.2:44372628-44372647 None:intergenic 45.0%
AATTCTACCATCCATCCCTC+CGG - chr3.2:44372943-44372962 None:intergenic 45.0%
AATTTACTAGCTACTGGCGG+AGG + chr3.2:44373188-44373207 MS.gene027074:CDS 45.0%
ACACCTGAGGAATAATTCGC+CGG - chr3.2:44372164-44372183 None:intergenic 45.0%
ACTGAAGGGGCTAAAGCTAA+AGG + chr3.2:44371952-44371971 MS.gene027074:CDS 45.0%
AGCGCCAATGTTCTTGCAAT+TGG + chr3.2:44372561-44372580 MS.gene027074:CDS 45.0%
AGGGCCATCTTCATCATCAA+CGG - chr3.2:44372646-44372665 None:intergenic 45.0%
AGGGGCTAAAGCTAAAGGTA+AGG + chr3.2:44371957-44371976 MS.gene027074:CDS 45.0%
ATTGGATGCTCCAGACATTG+TGG + chr3.2:44372506-44372525 MS.gene027074:CDS 45.0%
GCCCAACTTACAGATGTGAT+AGG - chr3.2:44372666-44372685 None:intergenic 45.0%
GCCCTATCACATCTGTAAGT+TGG + chr3.2:44372661-44372680 MS.gene027074:CDS 45.0%
GCTTGAACTCAGTTGACACT+GGG + chr3.2:44373258-44373277 MS.gene027074:CDS 45.0%
GGATACAGCTTCAGATAGAC+AGG + chr3.2:44372740-44372759 MS.gene027074:CDS 45.0%
GGATTGAAATGGTCAGCTTC+TGG + chr3.2:44373032-44373051 MS.gene027074:CDS 45.0%
GGGAATTTACTAGCTACTGG+CGG + chr3.2:44373185-44373204 MS.gene027074:CDS 45.0%
GTCAGCTTCTGGTCTACAAT+TGG + chr3.2:44373043-44373062 MS.gene027074:CDS 45.0%
GTGAAGATGGCAGAACTCAA+TGG + chr3.2:44373383-44373402 MS.gene027074:CDS 45.0%
TAGCTTCCTGTAAGCTTCTC+TGG - chr3.2:44372007-44372026 None:intergenic 45.0%
TCTGCCATCTTCACCATTGA+AGG - chr3.2:44373377-44373396 None:intergenic 45.0%
TGCATCAAACGGTTCCACTT+CGG + chr3.2:44372611-44372630 MS.gene027074:CDS 45.0%
TGCTTGAACTCAGTTGACAC+TGG + chr3.2:44373257-44373276 MS.gene027074:CDS 45.0%
TTCCTGTAAGCTTCTCTGGA+AGG - chr3.2:44372003-44372022 None:intergenic 45.0%
! CGGATGAAACCTTGAGGTTT+TGG + chr3.2:44373471-44373490 MS.gene027074:CDS 45.0%
! GAACTTTGAAAGGTGGGCAT+AGG + chr3.2:44372874-44372893 MS.gene027074:CDS 45.0%
! GCAGACTTCTGAGAGGATAT+TGG + chr3.2:44372488-44372507 MS.gene027074:intron 45.0%
!! ACAACTCTGAAGTGCAGCTA+TGG + chr3.2:44372718-44372737 MS.gene027074:CDS 45.0%
!! CAACTCTGAAGTGCAGCTAT+GGG + chr3.2:44372719-44372738 MS.gene027074:CDS 45.0%
!! TTGCTTGGTGTCCTTTCCAA+GGG + chr3.2:44373165-44373184 MS.gene027074:CDS 45.0%
AACCACATACTCACAACCGG+AGG + chr3.2:44372924-44372943 MS.gene027074:CDS 50.0%
AAGAAATCAACTGGCGGCGT+AGG - chr3.2:44372087-44372106 None:intergenic 50.0%
AATAATTCGCCGGGGCTTGA+TGG - chr3.2:44372154-44372173 None:intergenic 50.0%
ACCACATACTCACAACCGGA+GGG + chr3.2:44372925-44372944 MS.gene027074:CDS 50.0%
ACCTGAGGAATAATTCGCCG+GGG - chr3.2:44372162-44372181 None:intergenic 50.0%
AGTTCAAGCATGCACCTGTG+TGG - chr3.2:44373247-44373266 None:intergenic 50.0%
ATGCCAATATGACGGCCATC+AGG - chr3.2:44372690-44372709 None:intergenic 50.0%
CACCTGAGGAATAATTCGCC+GGG - chr3.2:44372163-44372182 None:intergenic 50.0%
CGCACTACATGGTGACTGAA+GGG + chr3.2:44371938-44371957 MS.gene027074:CDS 50.0%
CTCAGGTATGTTCCCTGTTG+TGG + chr3.2:44373282-44373301 MS.gene027074:CDS 50.0%
CTCCTTCCAGAGAAGCTTAC+AGG + chr3.2:44371998-44372017 MS.gene027074:CDS 50.0%
CTTCAACAAGGTGGCTTCAC+AGG + chr3.2:44373111-44373130 MS.gene027074:CDS 50.0%
GATGGCCGTCATATTGGCAT+TGG + chr3.2:44372690-44372709 MS.gene027074:CDS 50.0%
GCACTACATGGTGACTGAAG+GGG + chr3.2:44371939-44371958 MS.gene027074:CDS 50.0%
GTCTACAATTGGCCAGTGGA+GGG + chr3.2:44373054-44373073 MS.gene027074:CDS 50.0%
GTTCAAGCATGCACCTGTGT+GGG - chr3.2:44373246-44373265 None:intergenic 50.0%
TCTGGTCTACAATTGGCCAG+TGG + chr3.2:44373050-44373069 MS.gene027074:CDS 50.0%
TTGCCACTGTCCAACCATCT+GGG - chr3.2:44373442-44373461 None:intergenic 50.0%
! TCTGTAAGTTGGGCTCCTGA+TGG + chr3.2:44372672-44372691 MS.gene027074:CDS 50.0%
! TGGAAGGAGAGCACACTTGT+GGG - chr3.2:44371987-44372006 None:intergenic 50.0%
!! CTGCAGTAAAAGCGCTTGCT+TGG + chr3.2:44373150-44373169 MS.gene027074:CDS 50.0%
!! CTTGCTTGGTGTCCTTTCCA+AGG + chr3.2:44373164-44373183 MS.gene027074:CDS 50.0%
AAATCAACTGGCGGCGTAGG+TGG - chr3.2:44372084-44372103 None:intergenic 55.0%
AGCGAGTAGGGTCTTTGGCA+TGG + chr3.2:44372898-44372917 MS.gene027074:CDS 55.0%
AGGGAGCTACTCAGCTCTCA+TGG + chr3.2:44373317-44373336 MS.gene027074:CDS 55.0%
CACACACACACACACACCTG+AGG - chr3.2:44372177-44372196 None:intergenic 55.0%
CATACTCACAACCGGAGGGA+TGG + chr3.2:44372929-44372948 MS.gene027074:CDS 55.0%
CTCAGTTGACACTGGGTCTC+AGG + chr3.2:44373265-44373284 MS.gene027074:CDS 55.0%
CTGCAGCGGATGAAACCTTG+AGG + chr3.2:44373465-44373484 MS.gene027074:CDS 55.0%
GCGCACTACATGGTGACTGA+AGG + chr3.2:44371937-44371956 MS.gene027074:CDS 55.0%
GCTCCTGATGGCCGTCATAT+TGG + chr3.2:44372684-44372703 MS.gene027074:CDS 55.0%
GGGCATGACCGAGAAGTTTG+CGG + chr3.2:44373011-44373030 MS.gene027074:CDS 55.0%
GGTCTACAATTGGCCAGTGG+AGG + chr3.2:44373053-44373072 MS.gene027074:CDS 55.0%
GTTGCCACTGTCCAACCATC+TGG - chr3.2:44373443-44373462 None:intergenic 55.0%
TAGGCAGCGAGTAGGGTCTT+TGG + chr3.2:44372893-44372912 MS.gene027074:CDS 55.0%
TCCCTCCGGTTGTGAGTATG+TGG - chr3.2:44372929-44372948 None:intergenic 55.0%
! CTGGAAGGAGAGCACACTTG+TGG - chr3.2:44371988-44372007 None:intergenic 55.0%
CATATGGCGCAGAGCCCAGA+TGG + chr3.2:44373425-44373444 MS.gene027074:CDS 60.0%
CTCACAACCGGAGGGATGGA+TGG + chr3.2:44372933-44372952 MS.gene027074:CDS 60.0%
GACAGTGGCAACAGCTGCAG+CGG + chr3.2:44373451-44373470 MS.gene027074:CDS 60.0%
GAGCCCAGATGGTTGGACAG+TGG + chr3.2:44373436-44373455 MS.gene027074:CDS 60.0%
GCCCCGGCGAATTATTCCTC+AGG + chr3.2:44372158-44372177 MS.gene027074:CDS 60.0%
GTGGGCATAGGCAGCGAGTA+GGG + chr3.2:44372886-44372905 MS.gene027074:CDS 60.0%
CTAGCTACTGGCGGAGGCAG+TGG + chr3.2:44373194-44373213 MS.gene027074:CDS 65.0%
GGTGGGCATAGGCAGCGAGT+AGG + chr3.2:44372885-44372904 MS.gene027074:CDS 65.0%
TGGCGCAGAGCCCAGATGGT+TGG + chr3.2:44373429-44373448 MS.gene027074:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 44371892 44373580 44371892 ID=MS.gene027074
chr3.2 mRNA 44371892 44373580 44371892 ID=MS.gene027074.t1;Parent=MS.gene027074
chr3.2 exon 44371892 44372179 44371892 ID=MS.gene027074.t1.exon1;Parent=MS.gene027074.t1
chr3.2 CDS 44371892 44372179 44371892 ID=cds.MS.gene027074.t1;Parent=MS.gene027074.t1
chr3.2 exon 44372492 44372761 44372492 ID=MS.gene027074.t1.exon2;Parent=MS.gene027074.t1
chr3.2 CDS 44372492 44372761 44372492 ID=cds.MS.gene027074.t1;Parent=MS.gene027074.t1
chr3.2 exon 44372870 44373580 44372870 ID=MS.gene027074.t1.exon3;Parent=MS.gene027074.t1
chr3.2 CDS 44372870 44373580 44372870 ID=cds.MS.gene027074.t1;Parent=MS.gene027074.t1
Gene Sequence

>MS.gene027074

TTGGATAGATTCATACCGAATAGATCAGCTATGGATTTCGATTATGCGCACTACATGGTGACTGAAGGGGCTAAAGCTAAAGGTAAGGAAAACCCACAAGTGTGCTCTCCTTCCAGAGAAGCTTACAGGAAGCTACTTGCAGAAGCTCTAAACATGAACAGGACCAGAATTCTAGCTTTCAAGAACAAGCCACCTACGCCGCCAGTTGATTTCTTCTCTCATGATATCATTACTTCATCAACTCTTCGACAAGATAAAACCATCAAGCCCCGGCGAATTATTCCTCAGGTGTGTGTGTGTGTGTGTGTGTTTCTTAATGATATCTGATTCATATTTCATATATTTTATCATTATTAATTTCGTACTTGATTAGTTTTTGAAAATCAAGTGGGTCTGAGTTGTTTTCTCAATTCTTTTTAAATGGGCTTGTTTGGTGTGTGAAATCAAAATATTTTGCAATCTTGTTCTAGTTAATTTGTTGGTTATCTGATTTGAGAATTTTGAACTTCGGTTTTCTTAATTCTTATCTGAAAGTGTTGTGTGTTGTAAACCAAAAGATTTTGCAATTTTGTGCTAATTGATTGATTTGTTGTTTTGCAGACTTCTGAGAGGATATTGGATGCTCCAGACATTGTGGATGACTATTACCTCAATTTACTGGATTGGGGAAGCGCCAATGTTCTTGCAATTGGATTAGGAAACACATTGTATTTGTGGGATGCATCAAACGGTTCCACTTCGGAACTTGTTACCGTTGATGATGAAGATGGCCCTATCACATCTGTAAGTTGGGCTCCTGATGGCCGTCATATTGGCATTGGCTTGAACAACTCTGAAGTGCAGCTATGGGATACAGCTTCAGATAGACAGGTTTTATACTTATCTGGTTTACCCTTCAATCGATACATTATTATGAGCTATTCAGTATCCATTTCCTACTACTAGTTTTCTAATATTATTCATGTTATGTTTCTGCAGTTGAGAACTTTGAAAGGTGGGCATAGGCAGCGAGTAGGGTCTTTGGCATGGAACAACCACATACTCACAACCGGAGGGATGGATGGTAGAATTATCAATAATGATGTAAGAATTAGAGCACACATTGTTGAAACATACAGAGGGCATGACCGAGAAGTTTGCGGATTGAAATGGTCAGCTTCTGGTCTACAATTGGCCAGTGGAGGGAATGATAATCAACTTTACATCTGGGATAGAAGTACTTCAACAAGGTGGCTTCACAGGCTTGAAGATCATACATCTGCAGTAAAAGCGCTTGCTTGGTGTCCTTTCCAAGGGAATTTACTAGCTACTGGCGGAGGCAGTGGCGATGAAACCATCAAGTTTTGGAATACCCACACAGGTGCATGCTTGAACTCAGTTGACACTGGGTCTCAGGTATGTTCCCTGTTGTGGAACAAGAATGAGAGGGAGCTACTCAGCTCTCATGGTTTTACACAGAATCAGATAACACTTTGGAAATATCCTTCAATGGTGAAGATGGCAGAACTCAATGGTCACACTTCAAGAGTTCTTCATATGGCGCAGAGCCCAGATGGTTGGACAGTGGCAACAGCTGCAGCGGATGAAACCTTGAGGTTTTGGAATGCTTTTGGCACTCCAGAAGTTACAACAAAAGCTGCACCAAAAGCAAGAGTTGAGCCATTTTCACATTTGAGCCGCATTCGATAA

Protein sequence

>MS.gene027074.t1

LDRFIPNRSAMDFDYAHYMVTEGAKAKGKENPQVCSPSREAYRKLLAEALNMNRTRILAFKNKPPTPPVDFFSHDIITSSTLRQDKTIKPRRIIPQTSERILDAPDIVDDYYLNLLDWGSANVLAIGLGNTLYLWDASNGSTSELVTVDDEDGPITSVSWAPDGRHIGIGLNNSEVQLWDTASDRQLRTLKGGHRQRVGSLAWNNHILTTGGMDGRIINNDVRIRAHIVETYRGHDREVCGLKWSASGLQLASGGNDNQLYIWDRSTSTRWLHRLEDHTSAVKALAWCPFQGNLLATGGGSGDETIKFWNTHTGACLNSVDTGSQVCSLLWNKNERELLSSHGFTQNQITLWKYPSMVKMAELNGHTSRVLHMAQSPDGWTVATAAADETLRFWNAFGTPEVTTKAAPKARVEPFSHLSRIR