AlfalfaGEDB | MS.gene77885

M. sativa cultivar XinJiangDaYe / MS.gene77885

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF12854.10 PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77885.t1	AES69671.2	94.7	303	13	1	1	300	1	303	1.30E-147	533.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77885.t1	Q9SCP4	55.1	274	113	1	27	300	2	265	7.1e-81	302.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77885.t1	G7J0V1	94.7	303	13	1	1	300	1	303	9.7e-148	533.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene027071	MS.gene77885	PPI
MS.gene030294	MS.gene77885	PPI
MS.gene064035	MS.gene77885	PPI
MS.gene064762	MS.gene77885	PPI
MS.gene30172	MS.gene77885	PPI
MS.gene32029	MS.gene77885	PPI
MS.gene39423	MS.gene77885	PPI
MS.gene66342	MS.gene77885	PPI
MS.gene77885	MS.gene06176	PPI
MS.gene77885	MS.gene21734	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77885.t1	MTR_3g033040	95.501	489	19	1	1	486	1	489	0.0	955
MS.gene77885.t1	MTR_3g033040	94.661	487	23	1	1	484	1	487	0.0	942
MS.gene77885.t1	MTR_7g056613	44.952	416	227	1	63	476	82	497	3.18e-133	395
MS.gene77885.t1	MTR_7g056613	24.225	355	257	2	133	486	94	437	6.73e-35	137
MS.gene77885.t1	MTR_4g123860	41.371	394	231	0	76	469	85	478	3.29e-115	348
MS.gene77885.t1	MTR_4g123860	25.566	309	188	4	182	486	120	390	1.09e-23	104
MS.gene77885.t1	MTR_3g030970	69.474	190	20	3	155	344	1	152	1.18e-80	248
MS.gene77885.t1	MTR_8g091670	28.492	358	216	3	108	426	96	452	2.77e-45	165
MS.gene77885.t1	MTR_8g091670	26.462	325	198	7	166	484	119	408	3.70e-27	114
MS.gene77885.t1	MTR_4g107210	27.198	364	262	3	103	466	219	579	3.21e-42	160

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77885.t1	AT3G53170	62.198	455	162	1	21	475	46	490	0.0	600
MS.gene77885.t1	AT3G53170	27.148	291	211	1	197	486	141	431	7.08e-37	142
MS.gene77885.t1	AT3G53170	62.198	455	162	1	21	475	46	490	0.0	600
MS.gene77885.t1	AT3G53170	27.148	291	211	1	197	486	141	431	7.08e-37	142
MS.gene77885.t1	AT3G53170	62.115	454	162	1	27	480	2	445	0.0	597
MS.gene77885.t1	AT3G53170	27.148	291	211	1	197	486	91	381	4.79e-37	142
MS.gene77885.t1	AT3G53170	57.802	455	155	2	21	475	46	463	0.0	545
MS.gene77885.t1	AT3G53170	24.742	291	191	2	197	486	141	404	1.27e-28	118
MS.gene77885.t1	AT5G48730	43.269	416	233	1	63	478	87	499	8.52e-127	379
MS.gene77885.t1	AT3G06430	41.878	394	229	0	76	469	71	464	3.58e-114	345

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Find 99 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGGGTGAGTTATTCT+TGG	0.335821	3.4:-25053052	MS.gene77885:CDS
AAAGCTTCAAGAACAGCCTT+AGG	0.594372	3.4:+25055784	None:intergenic
AAATTGATAAGATGGAGAAG+TGG	0.654886	3.4:-25053479	MS.gene77885:CDS
AACATGATGATAAAGTCGTA+TGG	0.574388	3.4:-25053408	MS.gene77885:CDS
AACTTCTTCGAAATCAATAT+TGG	0.289193	3.4:-25053986	MS.gene77885:CDS
AAGAAGAATTGAAGTGGTTC+TGG	0.372166	3.4:+25055962	None:intergenic
AATACCGTAATTGAAGTTTA+TGG	0.165534	3.4:-25053303	MS.gene77885:CDS
AATTCCATCATCGACGGATA+TGG	0.342761	3.4:-25053621	MS.gene77885:CDS
AATTCTTTGATAGGATCATA+TGG	0.404861	3.4:-25053513	MS.gene77885:CDS
AATTGAAGTGGTTCTGGTTG+GGG	0.398983	3.4:+25055968	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTAGAGATTCATGAGT+TGG	-	chr3.4:25053088-25053107	MS.gene77885:CDS	30.0%
AAATTGATAAGATGGAGAAG+TGG	-	chr3.4:25055135-25055154	MS.gene77885:intron	30.0%
AACATGATGATAAAGTCGTA+TGG	-	chr3.4:25055206-25055225	MS.gene77885:intron	30.0%
AATGAAATAATGTGAGTGAG+TGG	-	chr3.4:25053998-25054017	MS.gene77885:intron	30.0%
AATTGCATAATTAGTGCCTA+TGG	-	chr3.4:25055521-25055540	MS.gene77885:intron	30.0%
AATTGTCAAAACATGTAACC+AGG	+	chr3.4:25053175-25053194	None:intergenic	30.0%
ACATATAATTCCATCATCGA+CGG	-	chr3.4:25054987-25055006	MS.gene77885:intron	30.0%
AGAGAAAAACCAAAGCATAA+TGG	+	chr3.4:25054261-25054280	None:intergenic	30.0%
AGTCAAATTAAGACTTTCCA+TGG	+	chr3.4:25054310-25054329	None:intergenic	30.0%
AGTTTCTGCAATCATTTCTT+TGG	-	chr3.4:25055726-25055745	MS.gene77885:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	25052554	25056082	25052554	ID=MS.gene77885
chr3.4	mRNA	25052554	25056082	25052554	ID=MS.gene77885.t1;Parent=MS.gene77885
chr3.4	exon	25055741	25056082	25055741	ID=MS.gene77885.t1.exon1;Parent=MS.gene77885.t1
chr3.4	CDS	25055741	25056082	25055741	ID=cds.MS.gene77885.t1;Parent=MS.gene77885.t1
chr3.4	exon	25052920	25054015	25052920	ID=MS.gene77885.t1.exon2;Parent=MS.gene77885.t1
chr3.4	CDS	25052920	25054015	25052920	ID=cds.MS.gene77885.t1;Parent=MS.gene77885.t1
chr3.4	exon	25052554	25052576	25052554	ID=MS.gene77885.t1.exon3;Parent=MS.gene77885.t1
chr3.4	CDS	25052554	25052576	25052554	ID=cds.MS.gene77885.t1;Parent=MS.gene77885.t1

Gene Sequence

>MS.gene77885

ATGGAGCTTCTTCCCCCTTCTGCTACGTGTAAAACAATTTCATGGTCTTCATCCATTTCCTCAACAGCGCCCCTAACCTGTTCGACCAAATTCCCCAACCAGAACCACTTCAATTCTTCTTCATTTCGCGTTCACTCATTGAAACGCTCTTCAAAGCCTTCATACGAAGGGCTTCAGAAGGATCCTAAGAAGGACTTGTCACGCATTCTTCGAACTGAAGCTGCTATCAGAGGCGTAGAGAATAAAGCCAAGTCATGGAAACATAAACAGCTTTGGCCTAAGGCTGTTCTTGAAGCTTTGGATGATGCTATCAAAGGCTGTCAGTGGAAGAATGCTCTCATGGTTGGTTTCGTCCTAATTTTTTTTTTTTGTTAAATTTTTGTTTTTGATGTGACCCTTTACTGTGTTGAATGTTTTTCTTTGGTTTGGTTTGGTTGGTTTTTGATGGGTGGGTGGGTGAACTTTGTGTATGTGAATTTATTCATTGATTACATGTTTTCACATAATAACTATATATAAGAGAAACTATTCAAAAAATCTAGAGATTCATGAGTTGGATAGATATACGATATATGCGTTGTTTTATTCATGCAGTCGACCCCACTTAGTAGGATAAGACCTGGTTACATGTTTTGACAATTAATTGAGTTTAATAGAGATGTATTACCGACATCAAATGAAAACTTATTGATCTGTATACGATCTGAGATGACGGCCGGAGTAGGTGTTGTATGGTGGAACACGGTTGTCCTTCACTGGAGTGGGGTGGTGTACATCAAAGACTTCAACGCTCTCAAGGAGGGTTTTCGGAATTCAGTGGTTTTCCATAGAATGACTTGTGTACCTTTCTTCAATGGATGAAACCCTTTTATATACGAGGTTCATATTTCCACATGAACGTGAAGTTGTTAAGTGGTTGTGCCTTATGTAATCCGGAGTGTCATCTGATTGTAATCAGAGGGCTCTGATTAACTCTAGGTTCTTTTCTTCTGTTTCTCGGCTACATATTGGATTTGGTGGTCCATCTTTGGACCGAGCGCCTTGTTGGGACTTTATGTCCTGGGATTGGAGCTTGGCCCATCCAGAACACTTATGATATTACCCCATAAGTTGACTTAAAACCACAACTTTATAAATAACCGCAAAATGCTGGAAACTTATTCGACATCAGTGTAAAACTGGTCTACATTGACAATGTATGTCATCTTTTCTCTTTAATTTTCGGATTGAGTCAATACAACGATTCATGTATGTATGAAACTTCTTTGAAATGATTGAATTAATTGAGATTTTTTTATGTAGAGTTGGTGGCTATTGGGGTTTTGGATTTTCTTGATTGACTCTTATTTTTCTAGGTAAATTAAAAAGTATGTCAAGATGTATAATCTGTGGAATGTGTTCTTTGGCTTGGTTTAGTGGATTTTTTTTTCGAGTTGGATGGTGAAATGAAATAATGTGAGTGAGTGGACTTAGTGTCATATGTATTTATTCATTTTCATGTTTTGATGATTAATTTTTGGATTGAGTGCAATGCAATGATTCATGGGTTATGATGCTGCTTCTAAATGATTGAATTGGGTTTTTTCGGTCATGTAGAGCTGATTGGGATTATGGTTGTCTCTTTGTTTTGTTGATAAAGTGAAAAAAACATTTCAAGTGTGATATTCTATTCTGGATTTTGGAGTGTCTCAACAATGAGCTGTGCCATTATGCTTTGGTTTTTCTCTCTTCTACCTTCCATTTCTGCCTGTGACCATGGAAAGTCTTAATTTGACTGTGTTAGGAAAATCATGAATTTGAGACAAAAATTATGGACTTCTAACTTTAATGTTGGTTTTTTTTAGTCTGCTCAGTTTCTAATTCTACTCTCATATCCTTGATTCACTCATTCACCTACTGATACTTGCACGCGTTCATGCAAACATAAGCAAAACTAGCGACACTTTGGGACATATCATAGTTTATGATGTGAAACATGACTAGATTTTGTTTTAGGCCGCAAAACATGACCAGAATTGTTTTAACATTCAGTTTTGTCTGTGTAACATGATCAATTTCCTTCTGCAGATTTTCGAACTTCTTCGAAATCAATATTGGTATGAACCAAGATGCCAGACTTATACAAAGTTGTTGATGATGCTTAGCAAGTGCAAGCAGCCTAAAGAGGCTAGTCAGCTCTATGAAACCATGTTGTTTGAAGGGCTTAAACCTACTGTTGATGTCTTCACCGCTCTTGTAAGTGCTTATGGTCAAAGTGGTCTCTTTCGTCACGCATTTTCTACTATTGAAGATATGAAATCAGTTGTTGATTGCAAACCAGATGTATATACATATTCTGTTCTTATAAGTTGCTGTGCAAAGTTTCGTCGATTTGATTTAATTGAACACGTTCTTGCGGATATGTCATATTCGGGCATTGAATGTAACAGTGTGACATATAATTCCATCATCGACGGATATGGCAAGGCTGGCATGTTTGAGCAGATGGAGAATTCATTGACAGATATGATTGAAAATGAAAACTGCCAACCAGATGTTTTCACGCTGAATTCTTTGATAGGATCATATGGAAATGGTGGGAAAATTGATAAGATGGAGAAGTGGTATGATGAATTTCAGCTAATGGGCATAAAGCCAGACATAAAGACATTCAACATGATGATAAAGTCGTATGGCAAAGCAGGCATGTACGATAAGATGAAGAGTGTGATGGATTTCATGGAGAGGAGGTTTTTTGCTCCGACAATTGTAACATATAATACCGTAATTGAAGTTTATGGCAAAGCCGGAGAAATTGAGAAGATGGATAAATACTTCAAAAATATGAAGCATATAGGAATGAAACCTAATTCTGTAACGTATTGCTCGCTTGTCAATGCGTATAGTAAAGCTGGGCTTATTCGCAAAATTGACTCAATCTTGAGGCATGTAGAAAATTCTGATGTCGTTTTGGATACTCCCTTCTTTAATTGCATAATTAGTGCCTATGGTCAGGCTGGCGACTTAAAAAAGATGGGTGAGTTATTCTTGGCAATGAGAGCAAGAAAATGTGAGCCTGATAGCACCACCTTCACTTGCATGATCCAGGCTTATAATACCCAAGGCATGACTGAAGCTGCTAAAAATTTGGAAACCATGATGATTTCTGCCAAAGATAGCTCAGGTATGTTGCAGTTTCTGCAATCATTTCTTTGGTGCAAATTTTATGTTTTGGCCCTATTCTGCTTGATGGAAAAATGCAAATTTTATGTTTTGGCCCATTGCTGTTGAAGCATTGGCCCTCCCGTGCACGACAATTCTTGCTATCTTTTCCTAACAATTTTGTCGCGGTGAAATAGTCCTAGGGAAGCCAGTACATGTAGCTCTCTTTGTCTATAATACCTATTTTAAGCGATAATAATGCTTCAAGAGTTTTTCTTCAAGTACATTCTATCACGTTTGTACTTTCTATTGATTCTTTTTTCCCATGAATGATATTTATATTACTGACACTTTTGGATTAACAGATACTAAGCTGATTGGATGCTAG

Protein sequence

>MS.gene77885.t1

MELLPPSATCKTISWSSSISSTAPLTCSTKFPNQNHFNSSSFRVHSLKRSSKPSYEGLQKDPKKDLSRILRTEAAIRGVENKAKSWKHKQLWPKAVLEALDDAIKGCQWKNALMIFELLRNQYWYEPRCQTYTKLLMMLSKCKQPKEASQLYETMLFEGLKPTVDVFTALVSAYGQSGLFRHAFSTIEDMKSVVDCKPDVYTYSVLISCCAKFRRFDLIEHVLADMSYSGIECNSVTYNSIIDGYGKAGMFEQMENSLTDMIENENCQPDVFTLNSLIGSYGNGGKIDKMEKWYDEFQLMGIKPDIKTFNMMIKSYGKAGMYDKMKSVMDFMERRFFAPTIVTYNTVIEVYGKAGEIEKMDKYFKNMKHIGMKPNSVTYCSLVNAYSKAGLIRKIDSILRHVENSDVVLDTPFFNCIISAYGQAGDLKKMGELFLAMRARKCEPDSTTFTCMIQAYNTQGMTEAAKNLETMMISAKDSSDTKLIGC