AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028034

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028034.t1 MTR_5g027480 93.874 555 34 0 1 555 1 555 0.0 1063
MS.gene028034.t1 MTR_5g027500 80.986 568 95 2 1 555 1 568 0.0 905
MS.gene028034.t1 MTR_4g077900 82.008 478 84 1 80 555 1 478 0.0 797
MS.gene028034.t1 MTR_1g026310 44.424 547 287 6 20 555 20 560 1.28e-156 459
MS.gene028034.t1 MTR_8g039720 44.283 551 284 8 20 555 17 559 5.29e-152 447
MS.gene028034.t1 MTR_1g090737 44.834 542 275 10 20 547 27 558 3.76e-144 427
MS.gene028034.t1 MTR_4g057730 41.418 536 299 8 20 547 6 534 2.52e-136 407
MS.gene028034.t1 MTR_2g095510 40.706 538 304 7 25 555 10 539 6.70e-134 400
MS.gene028034.t1 MTR_1g063120 39.891 549 299 9 20 547 6 544 2.05e-131 394
MS.gene028034.t1 MTR_3g088870 42.339 496 268 7 58 547 67 550 8.48e-130 390
MS.gene028034.t1 MTR_3g088880 41.968 498 272 8 54 547 64 548 9.71e-128 385
MS.gene028034.t1 MTR_1g063110 38.858 543 309 8 20 547 6 540 1.37e-125 379
MS.gene028034.t1 MTR_4g057730 40.977 471 263 8 20 482 6 469 1.68e-111 340
MS.gene028034.t1 MTR_2g105570 41.036 502 282 8 58 548 44 542 2.01e-110 340
MS.gene028034.t1 MTR_1g073180 39.382 518 285 8 42 549 30 528 8.79e-110 338
MS.gene028034.t1 MTR_4g128337 38.800 500 288 10 58 547 49 540 8.02e-107 331
MS.gene028034.t1 MTR_4g005750 41.916 501 273 11 58 548 43 535 1.67e-104 325
MS.gene028034.t1 MTR_4g057730 40.355 451 254 8 20 462 6 449 7.06e-103 318
MS.gene028034.t1 MTR_3g460770 35.130 538 331 8 26 555 14 541 1.80e-101 317
MS.gene028034.t1 MTR_5g007640 38.386 508 292 8 58 553 87 585 3.85e-100 315
MS.gene028034.t1 MTR_2g095510 39.551 445 254 7 25 462 10 446 2.50e-99 308
MS.gene028034.t1 MTR_1g073180 37.753 543 300 12 5 530 10 531 1.07e-98 310
MS.gene028034.t1 MTR_1g026470 38.660 388 221 6 20 396 20 401 3.05e-80 258
MS.gene028034.t1 MTR_1g026430 38.660 388 221 6 20 396 20 401 5.92e-80 257
MS.gene028034.t1 MTR_3g035130 30.247 486 319 9 68 545 32 505 1.49e-52 187
MS.gene028034.t1 MTR_5g076240 28.053 524 318 17 66 549 38 542 9.41e-44 164
MS.gene028034.t1 MTR_1569s0010 25.954 524 330 13 68 549 22 529 1.20e-42 160
MS.gene028034.t1 MTR_3g035130 30.385 441 285 11 68 499 32 459 7.94e-42 157
MS.gene028034.t1 MTR_0803s0020 27.344 512 292 14 70 541 263 734 1.27e-36 146
MS.gene028034.t1 MTR_3g064420 27.205 533 319 17 64 548 36 547 2.88e-36 143
MS.gene028034.t1 MTR_5g076220 29.268 369 233 9 196 548 186 542 3.64e-36 142
MS.gene028034.t1 MTR_4g011790 25.678 479 311 12 109 554 132 598 1.08e-35 141
MS.gene028034.t1 MTR_2g044180 26.984 504 322 14 81 548 59 552 1.47e-35 140
MS.gene028034.t1 MTR_2g044180 29.351 385 245 11 181 548 87 461 1.58e-35 139
MS.gene028034.t1 MTR_2g030240 26.248 541 319 15 71 555 31 547 2.66e-35 140
MS.gene028034.t1 MTR_5g008820 27.115 520 310 18 69 548 41 531 1.76e-34 137
MS.gene028034.t1 MTR_4g011790 25.410 488 310 14 109 554 132 607 5.32e-34 136
MS.gene028034.t1 MTR_4g013210 28.010 407 244 13 182 554 54 445 7.22e-34 134
MS.gene028034.t1 MTR_5g008800 28.291 509 322 15 69 549 41 534 8.06e-34 135
MS.gene028034.t1 MTR_4g121600 25.388 516 339 15 69 548 47 552 1.13e-33 135
MS.gene028034.t1 MTR_0161s0050 27.926 376 229 12 196 548 188 544 1.91e-33 134
MS.gene028034.t1 MTR_8g074040 27.680 513 298 20 80 548 94 577 8.10e-33 133
MS.gene028034.t1 MTR_4g011790 25.482 467 303 12 109 542 132 586 1.19e-32 132
MS.gene028034.t1 MTR_8g074040 29.351 385 229 14 185 549 99 460 3.73e-32 130
MS.gene028034.t1 MTR_5g076200 27.005 374 235 10 196 548 186 542 7.31e-32 130
MS.gene028034.t1 MTR_2g030240 27.638 398 233 10 197 555 72 453 7.98e-30 122
MS.gene028034.t1 MTR_8g074120 28.533 375 223 14 198 549 137 489 1.95e-29 122
MS.gene028034.t1 MTR_7g084850 24.057 557 361 15 43 555 186 724 2.34e-28 120
MS.gene028034.t1 MTR_1g026350 41.045 134 79 0 20 153 20 153 1.04e-27 109
MS.gene028034.t1 MTR_4g013210 27.320 388 230 12 182 554 54 404 7.99e-27 113
MS.gene028034.t1 MTR_4g013210 27.882 373 226 12 182 523 206 566 1.51e-26 114
MS.gene028034.t1 MTR_4g013210 27.132 387 232 11 182 554 206 556 3.10e-26 113
MS.gene028034.t1 MTR_5g023730 26.641 518 324 21 69 553 48 542 1.01e-25 111
MS.gene028034.t1 MTR_1g104810 24.478 527 306 15 23 472 57 568 6.31e-23 103
MS.gene028034.t1 MTR_4g057755 55.556 72 32 0 411 482 46 117 6.41e-22 92.0
MS.gene028034.t1 MTR_1g104810 24.845 483 283 14 55 472 34 501 1.12e-21 99.4
MS.gene028034.t1 MTR_3g087980 25.103 486 274 17 68 475 106 579 1.32e-21 99.4
MS.gene028034.t1 MTR_1g030290 28.000 350 172 16 198 480 250 586 1.52e-20 96.3
MS.gene028034.t1 MTR_1054s0020 25.770 357 240 11 200 549 432 770 1.66e-20 96.3
MS.gene028034.t1 MTR_7g109830 24.197 529 305 18 37 484 36 549 8.83e-18 87.4
MS.gene028034.t1 MTR_8g099420 25.879 398 217 14 140 484 180 552 1.90e-17 86.3
MS.gene028034.t1 MTR_8g083170 30.631 222 132 7 324 532 459 671 2.45e-16 82.8
MS.gene028034.t1 MTR_2g098490 26.448 397 234 17 198 544 647 1035 3.78e-16 82.8
MS.gene028034.t1 MTR_4g066130 25.693 397 238 18 197 544 650 1038 1.87e-15 80.5
MS.gene028034.t1 MTR_3g084470 31.019 216 128 6 296 495 418 628 8.94e-15 77.8
MS.gene028034.t1 MTR_3g084450 31.313 198 113 7 315 495 233 424 2.82e-14 75.9
MS.gene028034.t1 MTR_3g088890 48.438 64 33 0 457 520 10 73 3.16e-14 68.9
MS.gene028034.t1 MTR_3g084450 31.313 198 113 7 315 495 441 632 9.95e-14 74.7
MS.gene028034.t1 MTR_4g013210 27.863 262 157 10 182 423 206 455 9.12e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028034.t1 AT4G19010 60.329 547 212 4 10 551 12 558 0.0 665
MS.gene028034.t1 AT1G20510 45.833 528 271 6 27 547 17 536 3.23e-162 473
MS.gene028034.t1 AT1G20480 43.327 547 291 6 20 555 27 565 1.25e-152 449
MS.gene028034.t1 AT1G20500 42.379 538 291 6 27 555 23 550 1.03e-145 431
MS.gene028034.t1 AT4G05160 40.884 543 305 6 23 555 8 544 4.04e-140 416
MS.gene028034.t1 AT5G38120 42.105 532 284 9 27 547 24 542 1.35e-135 405
MS.gene028034.t1 AT1G20510 44.924 463 240 6 27 482 17 471 1.82e-135 402
MS.gene028034.t1 AT5G63380 40.472 551 304 7 12 547 9 550 2.60e-135 405
MS.gene028034.t1 AT1G20510 44.018 443 233 6 27 462 17 451 1.46e-124 374
MS.gene028034.t1 AT5G38120 41.071 504 273 9 27 519 24 514 1.48e-121 368
MS.gene028034.t1 AT3G21240 42.292 506 279 8 58 555 54 554 2.00e-115 353
MS.gene028034.t1 AT1G65060 41.734 496 280 8 58 548 66 557 3.36e-110 340
MS.gene028034.t1 AT1G51680 42.829 509 277 8 58 555 56 561 4.08e-110 340
MS.gene028034.t1 AT5G38120 40.899 467 252 9 27 482 24 477 7.35e-110 337
MS.gene028034.t1 AT5G38120 40.899 467 252 9 27 482 24 477 7.35e-110 337
MS.gene028034.t1 AT3G21230 39.848 527 301 9 40 553 43 566 2.72e-108 335
MS.gene028034.t1 AT1G62940 38.386 508 282 9 57 549 43 534 1.27e-98 310
MS.gene028034.t1 AT1G51680 42.495 473 258 8 58 519 56 525 2.78e-98 308
MS.gene028034.t1 AT3G21230 39.554 493 282 9 40 519 43 532 1.68e-96 304
MS.gene028034.t1 AT3G21240 41.149 435 243 8 58 484 54 483 1.79e-90 287
MS.gene028034.t1 AT3G21240 41.149 435 243 8 58 484 54 483 1.79e-90 287
MS.gene028034.t1 AT1G20490 38.313 415 237 6 27 431 23 428 5.33e-89 281
MS.gene028034.t1 AT1G20490 38.313 415 237 6 27 431 23 428 5.33e-89 281
MS.gene028034.t1 AT3G21230 38.816 456 263 9 40 482 43 495 7.54e-85 272
MS.gene028034.t1 AT1G51680 41.096 438 244 8 58 484 56 490 1.26e-84 271
MS.gene028034.t1 AT1G65060 39.806 412 239 8 58 464 66 473 2.49e-78 255
MS.gene028034.t1 AT3G48990 29.630 486 324 12 67 545 30 504 2.02e-49 179
MS.gene028034.t1 AT3G21230 34.367 387 238 9 40 413 43 426 2.95e-49 177
MS.gene028034.t1 AT1G21530 27.322 549 335 21 41 549 19 543 1.52e-42 160
MS.gene028034.t1 AT1G21530 27.239 547 336 21 41 549 19 541 3.41e-41 156
MS.gene028034.t1 AT1G77240 33.156 377 220 14 195 552 182 545 3.56e-41 156
MS.gene028034.t1 AT1G21540 26.964 560 333 23 41 552 19 550 5.00e-40 153
MS.gene028034.t1 AT5G16370 27.237 503 317 15 80 549 53 539 6.21e-39 150
MS.gene028034.t1 AT1G65890 26.316 532 325 17 66 549 38 550 6.32e-39 150
MS.gene028034.t1 AT1G30520 27.462 528 306 17 77 549 42 547 6.11e-38 147
MS.gene028034.t1 AT1G30520 27.462 528 306 17 77 549 42 547 6.11e-38 147
MS.gene028034.t1 AT1G65880 26.755 527 330 17 66 549 38 551 7.50e-38 147
MS.gene028034.t1 AT5G16340 26.839 503 319 14 80 549 53 539 3.81e-36 142
MS.gene028034.t1 AT1G66120 27.099 524 324 17 66 549 38 543 2.06e-35 140
MS.gene028034.t1 AT3G16910 29.457 387 244 12 181 549 181 556 2.20e-34 137
MS.gene028034.t1 AT1G75960 30.458 371 225 14 196 548 183 538 6.04e-34 135
MS.gene028034.t1 AT1G20560 28.458 506 307 17 80 549 54 540 2.25e-31 128
MS.gene028034.t1 AT5G36880 25.328 533 344 13 67 555 147 669 1.22e-30 127
MS.gene028034.t1 AT5G36880 25.328 533 344 13 67 555 147 669 1.22e-30 127
MS.gene028034.t1 AT5G36880 25.328 533 344 13 67 555 147 669 1.22e-30 127
MS.gene028034.t1 AT5G36880 25.328 533 344 13 67 555 147 669 1.22e-30 127
MS.gene028034.t1 AT5G36880 25.328 533 344 13 67 555 197 719 1.32e-30 127
MS.gene028034.t1 AT3G16170 24.641 487 300 16 109 554 147 607 2.28e-30 125
MS.gene028034.t1 AT1G20560 30.914 372 218 13 198 549 110 462 4.67e-30 123
MS.gene028034.t1 AT1G30520 26.846 447 261 15 77 482 42 463 6.37e-30 123
MS.gene028034.t1 AT1G30520 26.846 447 261 15 77 482 42 463 6.37e-30 123
MS.gene028034.t1 AT1G76290 27.200 500 315 18 80 549 52 532 7.99e-30 124
MS.gene028034.t1 AT2G17650 28.184 369 237 13 196 549 240 595 3.61e-29 122
MS.gene028034.t1 AT5G27600 26.960 523 294 17 23 470 60 569 1.50e-25 111
MS.gene028034.t1 AT1G68270 22.391 527 320 13 66 548 38 519 4.20e-25 109
MS.gene028034.t1 AT5G36880 25.486 463 294 12 67 488 147 599 3.05e-24 107
MS.gene028034.t1 AT1G49430 25.000 524 308 19 36 484 40 553 1.82e-21 99.0
MS.gene028034.t1 AT1G77590 24.180 488 287 15 68 482 107 584 1.03e-19 93.6
MS.gene028034.t1 AT3G05970 24.345 534 288 17 26 470 63 569 9.35e-19 90.5
MS.gene028034.t1 AT1G77590 26.471 374 203 14 171 482 75 438 4.31e-18 88.2
MS.gene028034.t1 AT3G23790 29.651 172 103 5 335 493 465 631 2.43e-12 70.1

Find 118 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCTTATTGATTCCTCTTC+TGG 0.119793 5.3:-17102017 MS.gene028034:CDS
GGCTTCTGGTCTTCATAAAA+TGG 0.204210 5.3:-17101949 MS.gene028034:CDS
ATGGGATAGTAAATTGAATT+TGG 0.204514 5.3:+17101891 None:intergenic
TATCAAATACAAGGGCTTTC+AGG 0.229499 5.3:-17100452 MS.gene028034:intron
TTGACATTGACGAGACTATT+AGG 0.230432 5.3:-17101356 MS.gene028034:CDS
TACTATCCCATTGTACTATT+AGG 0.254485 5.3:-17101879 MS.gene028034:CDS
CTTAGGATACTTGAATAATA+AGG 0.261353 5.3:-17100581 MS.gene028034:intron
CCCTTATTGATTCCTCTTCT+GGG 0.272214 5.3:-17102016 MS.gene028034:CDS
TTGCCGATGTTCCATTTATA+TGG 0.273927 5.3:-17101441 MS.gene028034:CDS
ACCTGTATAAAATCAACATT+AGG 0.277352 5.3:+17101162 None:intergenic
AGAGCGATAAACCATATAAA+TGG 0.308944 5.3:+17101430 None:intergenic
GCGAAGGCAAAGGGTGTAAA+TGG 0.324668 5.3:-17101270 MS.gene028034:CDS
TGCTACGGGATTATTGTCAT+TGG 0.327188 5.3:-17101406 MS.gene028034:CDS
TTAGTCAAATCAATGGCTTC+TGG 0.343881 5.3:-17101963 MS.gene028034:CDS
GAAATGCCTTAGAGTTTAGA+AGG 0.348615 5.3:+17099875 None:intergenic
ACAGCAACATCCACTATTTC+AGG 0.352555 5.3:+17100312 None:intergenic
AGCAGTTTCTGAGTTGCTTT+CGG 0.356180 5.3:+17099900 None:intergenic
GTGTCTTCTTGTTTAATAAC+CGG 0.370014 5.3:+17101615 None:intergenic
ATAGTGGATGTTGCTGTTAC+AGG 0.372325 5.3:-17100306 MS.gene028034:CDS
ATGACTGAGTCGGGTGCATT+AGG 0.374967 5.3:-17101011 MS.gene028034:CDS
CTCCCCAGCTTCTTCATCCT+TGG 0.375919 5.3:+17100188 None:intergenic
AACGATACAACGTCGAGAAA+AGG 0.386540 5.3:+17102071 None:intergenic
TGCTTGCCTTCTAAACTCTA+AGG 0.391570 5.3:-17099881 None:intergenic
TCCCAGAAGAGGAATCAATA+AGG 0.395051 5.3:+17102015 None:intergenic
ACTTTGCGAACCTTCTTGAA+TGG 0.396762 5.3:+17099968 None:intergenic
TGACATTGACGAGACTATTA+GGG 0.397999 5.3:-17101355 MS.gene028034:CDS
GGAGATTCCAGTGGGATTTG+TGG 0.412173 5.3:-17100169 MS.gene028034:CDS
GCTACGGGATTATTGTCATT+GGG 0.419178 5.3:-17101405 MS.gene028034:CDS
GTGTGTACTATTGTAAATTC+CGG 0.423833 5.3:+17102118 None:intergenic
CAGGCAGAAGTGGTGAGCTT+TGG 0.427653 5.3:-17100878 MS.gene028034:CDS
AAACAAAGTTACCAGAAATC+AGG 0.431755 5.3:+17101649 None:intergenic
GTTAAGAAATTAGAACCATT+AGG 0.435854 5.3:-17101741 MS.gene028034:CDS
TAACAACTTTGAGTAAGAAA+TGG 0.436153 5.3:+17101989 None:intergenic
TGGTTTATCGCTCTTTGCTA+CGG 0.436373 5.3:-17101421 MS.gene028034:CDS
TGGAGGCAAAAGTGGTAGAT+TGG 0.438591 5.3:-17100923 MS.gene028034:CDS
CCTGTATAAAATCAACATTA+GGG 0.441453 5.3:+17101163 None:intergenic
AAAGATGGTTGGCTACATAC+TGG 0.442873 5.3:-17100535 MS.gene028034:CDS
GCTGTCAATGCCGACAATAT+CGG 0.443469 5.3:+17101291 None:intergenic
GAAGCCATTGATTTGACTAA+AGG 0.445775 5.3:+17101966 None:intergenic
TATCGATTTCGTTGCTAAGC+AGG 0.452311 5.3:-17100109 MS.gene028034:intron
TGTTGTTCCACCGATATTGT+CGG 0.453280 5.3:-17101301 MS.gene028034:CDS
GTTACCTTTAGTCAAATCAA+TGG 0.458910 5.3:-17101970 MS.gene028034:CDS
ACGAAATCGATAACATCCTT+TGG 0.459388 5.3:+17100120 None:intergenic
GGATTTGTGGTCAAGAAGGT+TGG 0.460966 5.3:-17100156 MS.gene028034:CDS
ACGATACAACGTCGAGAAAA+GGG 0.466770 5.3:+17102072 None:intergenic
TTTCGCAACTATTCTTCACT+AGG 0.467126 5.3:-17100963 MS.gene028034:CDS
TTCTGTGCCAGAAAATGAAA+AGG 0.468038 5.3:-17101706 MS.gene028034:CDS
AAGATTCCGAGGTCTGTGAC+TGG 0.468807 5.3:-17099932 MS.gene028034:CDS
AATCAACATTAGGGAAAGCT+TGG 0.471169 5.3:+17101172 None:intergenic
GCTTCTGGTCTTCATAAAAT+GGG 0.474868 5.3:-17101948 MS.gene028034:CDS
GGTTTATCGCTCTTTGCTAC+GGG 0.477009 5.3:-17101420 MS.gene028034:CDS
ATAACACCTAATAGTACAAT+GGG 0.478275 5.3:+17101873 None:intergenic
TCATAGAAATCTTATTGCTA+TGG 0.487900 5.3:-17101535 MS.gene028034:CDS
ATATCATCACTCACCCTCCT+TGG 0.494964 5.3:-17102154 MS.gene028034:CDS
ATTTCATCAACACTACTAAG+AGG 0.496577 5.3:+17101819 None:intergenic
CACAGACCTCGGAATCTTGT+CGG 0.496944 5.3:+17099937 None:intergenic
GAAAGAATTTATCAAATACA+AGG 0.497893 5.3:-17100461 MS.gene028034:CDS
GGGTCGGTCGGAAGGCTCCT+AGG 0.498932 5.3:+17102092 None:intergenic
TGTTGATGAAATTCGTAAGC+AGG 0.500410 5.3:-17101808 MS.gene028034:CDS
CCCAGAAGAGGAATCAATAA+GGG 0.505561 5.3:+17102016 None:intergenic
GAAATAATAGGAATGCCTAA+TGG 0.507899 5.3:+17101726 None:intergenic
TAAGTTGCAGAGTTTGAGAC+AGG 0.511530 5.3:-17101244 MS.gene028034:CDS
AGTGGGATTTGTGGTCAAGA+AGG 0.512122 5.3:-17100160 MS.gene028034:CDS
AGCACAGCTTCTAAATCAGC+AGG 0.515337 5.3:+17100345 None:intergenic
GTTTATGGAATGACTGAGTC+GGG 0.516171 5.3:-17101020 MS.gene028034:CDS
GGTTTATGGAATGACTGAGT+CGG 0.521041 5.3:-17101021 MS.gene028034:CDS
AGTGGTGAGCTTTGGTTGAG+AGG 0.521413 5.3:-17100870 MS.gene028034:CDS
ACAATAGTACACACTCTCCT+AGG 0.522782 5.3:-17102109 MS.gene028034:CDS
AGTGCCAAGGATGAAGAAGC+TGG 0.523191 5.3:-17100192 MS.gene028034:CDS
CAAAGCTCACCACTTCTGCC+TGG 0.525545 5.3:+17100879 None:intergenic
ATGTCGACAATTGATAAAGA+TGG 0.526979 5.3:-17100550 MS.gene028034:CDS
TCCAAACATGGAGGCAAAAG+TGG 0.536470 5.3:-17100931 MS.gene028034:CDS
TTCGCAACTATTCTTCACTA+GGG 0.541708 5.3:-17100962 MS.gene028034:CDS
GCAGGTTGCTCCATTCAAGA+AGG 0.547112 5.3:-17099978 MS.gene028034:intron
CGAGAAAAGGGTCGGTCGGA+AGG 0.547817 5.3:+17102084 None:intergenic
GTGCCAAGGATGAAGAAGCT+GGG 0.553492 5.3:-17100191 MS.gene028034:CDS
TTCTTGACCACAAATCCCAC+TGG 0.554243 5.3:+17100162 None:intergenic
CATAACACCTAATAGTACAA+TGG 0.557647 5.3:+17101872 None:intergenic
AAAGTGGTAGATTGGAAAAG+TGG 0.560810 5.3:-17100915 MS.gene028034:CDS
GCATTGACAGCGAAGGCAAA+GGG 0.561700 5.3:-17101279 MS.gene028034:CDS
TAGTGGATGTTGCTGTTACA+GGG 0.564429 5.3:-17100305 MS.gene028034:intron
ACACTACTAAGAGGATTCAA+TGG 0.565007 5.3:+17101828 None:intergenic
GGCATTGACAGCGAAGGCAA+AGG 0.570107 5.3:-17101280 MS.gene028034:CDS
ATTTGATAAATTCTTTCAAG+CGG 0.572308 5.3:+17100467 None:intergenic
AGAGGTCCTTCAATTATGAA+AGG 0.572900 5.3:-17100852 MS.gene028034:intron
CGACAATTGATAAAGATGGT+TGG 0.573781 5.3:-17100546 MS.gene028034:CDS
AGATTCCGAGGTCTGTGACT+GGG 0.575854 5.3:-17099931 MS.gene028034:CDS
ATCTTCCCAGTCACAGACCT+CGG 0.576821 5.3:+17099926 None:intergenic
AAAGAATTTATCAAATACAA+GGG 0.580755 5.3:-17100460 MS.gene028034:CDS
CATAAAATGGGAGTTTCACA+AGG 0.583635 5.3:-17101936 MS.gene028034:CDS
CTATTAGGTGTTATGTACCT+AGG 0.587403 5.3:-17101864 MS.gene028034:CDS
AAACCATATAAATGGAACAT+CGG 0.588130 5.3:+17101438 None:intergenic
TTGCAGAGTTTGAGACAGGT+CGG 0.589428 5.3:-17101240 MS.gene028034:CDS
GGTACTACTGGTGTGAGCAA+AGG 0.591807 5.3:-17101570 MS.gene028034:CDS
ATTCAAGAAGGTTCGCAAAG+TGG 0.594840 5.3:-17099966 MS.gene028034:CDS
AGAAATGGAAGTCCCAGAAG+AGG 0.600253 5.3:+17102004 None:intergenic
AGGGCTAAAACCCCATCATG+AGG 0.601023 5.3:+17102035 None:intergenic
AGTTTCTGAGTTGCTTTCGG+AGG 0.613327 5.3:+17099903 None:intergenic
AGGGTTGTTAGCTCCAAACA+TGG 0.614345 5.3:-17100943 MS.gene028034:CDS
TGGAAGTGTACTATCTCCAA+AGG 0.615514 5.3:-17100136 MS.gene028034:CDS
TGCCAAGGATGAAGAAGCTG+GGG 0.626607 5.3:-17100190 MS.gene028034:CDS
AGCTCACCACTTCTGCCTGG+TGG 0.628152 5.3:+17100882 None:intergenic
TCGGGTGCATTAGGAGCATG+CGG 0.630001 5.3:-17101002 MS.gene028034:CDS
GTCAATGCCGACAATATCGG+TGG 0.636107 5.3:+17101294 None:intergenic
ACCAGAAGAAAACAATATAG+CGG 0.648784 5.3:+17101590 None:intergenic
GGGCTAAAACCCCATCATGA+GGG 0.653343 5.3:+17102036 None:intergenic
CGTAAGCAGGTTAATGACTG+TGG 0.656452 5.3:-17101795 MS.gene028034:CDS
ACGTCGAGAAAAGGGTCGGT+CGG 0.657613 5.3:+17102080 None:intergenic
ATTGTCGGCATTGACAGCGA+AGG 0.665271 5.3:-17101286 MS.gene028034:CDS
GTTCTACAATCGTTGTAATG+CGG 0.673134 5.3:-17101383 MS.gene028034:CDS
GAAGCTGGGGAGATTCCAGT+GGG 0.676967 5.3:-17100177 MS.gene028034:CDS
TTGGAAGTAGAAGCAAAACA+AGG 0.677547 5.3:+17101910 None:intergenic
AGAAGCTGGGGAGATTCCAG+TGG 0.677976 5.3:-17100178 MS.gene028034:CDS
ACAGCTTCTAAATCAGCAGG+AGG 0.685957 5.3:+17100348 None:intergenic
TACAACGTCGAGAAAAGGGT+CGG 0.686772 5.3:+17102076 None:intergenic
ATGGTGTAACAACAGCACCT+AGG 0.700872 5.3:+17101847 None:intergenic
TCTTCACCGACAAGATTCCG+AGG 0.707806 5.3:-17099943 MS.gene028034:CDS
GTTGTTAGCTCCAAACATGG+AGG 0.741487 5.3:-17100940 MS.gene028034:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAATTTATCAAATACAA+GGG - chr5.3:17101611-17101630 MS.gene028034:CDS 15.0%
!! GTTTGATTAATAATTTCAAT+TGG + chr5.3:17101456-17101475 None:intergenic 15.0%
!! TTATATTTAAATGTCTAAAG+AGG + chr5.3:17101829-17101848 None:intergenic 15.0%
!!! ATGTAAAATTGTTTCTTTTT+AGG - chr5.3:17101029-17101048 MS.gene028034:intron 15.0%
!! AAACAACATTATTTGAATGA+TGG + chr5.3:17100983-17101002 None:intergenic 20.0%
!! ATTTGATAAATTCTTTCAAG+CGG + chr5.3:17101607-17101626 None:intergenic 20.0%
!! GAAAGAATTTATCAAATACA+AGG - chr5.3:17101610-17101629 MS.gene028034:CDS 20.0%
!! TAAATACTAAAAGGATAACA+TGG - chr5.3:17101281-17101300 MS.gene028034:CDS 20.0%
!!! AACTTTTTCCTTAATTTCTT+AGG - chr5.3:17101473-17101492 MS.gene028034:CDS 20.0%
!!! AATAAGACTATTTTATTCTG+AGG + chr5.3:17100940-17100959 None:intergenic 20.0%
!!! AATTTTAACCCTTTTTTTGT+TGG - chr5.3:17102071-17102090 MS.gene028034:CDS 20.0%
!!! ATTGTTTATTTTGATCAAGA+TGG - chr5.3:17101563-17101582 MS.gene028034:CDS 20.0%
!!! ATTGTTTCTTTTTAGGTTTA+TGG - chr5.3:17101036-17101055 MS.gene028034:intron 20.0%
!!! TCTAATTTCTTAACATTTTC+AGG + chr5.3:17100324-17100343 None:intergenic 20.0%
!!! TGTTTTCCTAGATTTTTTTA+AGG - chr5.3:17100998-17101017 MS.gene028034:CDS 20.0%
!!! TTTTTACCTTTCATAATTGA+AGG + chr5.3:17101228-17101247 None:intergenic 20.0%
! AAACCATATAAATGGAACAT+CGG + chr5.3:17100636-17100655 None:intergenic 25.0%
! ACCTGTATAAAATCAACATT+AGG + chr5.3:17100912-17100931 None:intergenic 25.0%
! ACTTGAATCAATGTTAGTAT+TGG - chr5.3:17102037-17102056 MS.gene028034:CDS 25.0%
! AGGATAACATGGTAATATAA+AGG - chr5.3:17101292-17101311 MS.gene028034:CDS 25.0%
! ATAACACCTAATAGTACAAT+GGG + chr5.3:17100201-17100220 None:intergenic 25.0%
! ATGGGATAGTAAATTGAATT+TGG + chr5.3:17100183-17100202 None:intergenic 25.0%
! CCTGTATAAAATCAACATTA+GGG + chr5.3:17100911-17100930 None:intergenic 25.0%
! CTTAGGATACTTGAATAATA+AGG - chr5.3:17101490-17101509 MS.gene028034:CDS 25.0%
! GTTAAGAAATTAGAACCATT+AGG - chr5.3:17100330-17100349 MS.gene028034:CDS 25.0%
! TAACAACTTTGAGTAAGAAA+TGG + chr5.3:17100085-17100104 None:intergenic 25.0%
! TCAAGTATCCTAAGAAATTA+AGG + chr5.3:17101484-17101503 None:intergenic 25.0%
! TCATAGAAATCTTATTGCTA+TGG - chr5.3:17100536-17100555 MS.gene028034:CDS 25.0%
!! AATCAATGTTAGTATTGGAA+TGG - chr5.3:17102042-17102061 MS.gene028034:CDS 25.0%
!! TTTATAGCTTTTGTGCTTAA+AGG + chr5.3:17100870-17100889 None:intergenic 25.0%
!!! TAAAGGTTTTATCTATTGTG+TGG - chr5.3:17101309-17101328 MS.gene028034:CDS 25.0%
!!! TGTTTTTTTAACCTGATTTC+TGG - chr5.3:17100411-17100430 MS.gene028034:intron 25.0%
AAACAAAGTTACCAGAAATC+AGG + chr5.3:17100425-17100444 None:intergenic 30.0%
ACCAGAAGAAAACAATATAG+CGG + chr5.3:17100484-17100503 None:intergenic 30.0%
AGAGCGATAAACCATATAAA+TGG + chr5.3:17100644-17100663 None:intergenic 30.0%
ATGTCGACAATTGATAAAGA+TGG - chr5.3:17101521-17101540 MS.gene028034:CDS 30.0%
ATTTCATCAACACTACTAAG+AGG + chr5.3:17100255-17100274 None:intergenic 30.0%
CATAACACCTAATAGTACAA+TGG + chr5.3:17100202-17100221 None:intergenic 30.0%
GAAATAATAGGAATGCCTAA+TGG + chr5.3:17100348-17100367 None:intergenic 30.0%
GCACATCCTTAAAAAAATCT+AGG + chr5.3:17101007-17101026 None:intergenic 30.0%
GGAAAATGATGAAACACTTA+AGG + chr5.3:17101852-17101871 None:intergenic 30.0%
GTGTGTACTATTGTAAATTC+CGG + chr5.3:17099956-17099975 None:intergenic 30.0%
GTTACCTTTAGTCAAATCAA+TGG - chr5.3:17100101-17100120 MS.gene028034:intron 30.0%
TACTATCCCATTGTACTATT+AGG - chr5.3:17100192-17100211 MS.gene028034:CDS 30.0%
! AACAGCTAGATACACATTTT+TGG + chr5.3:17100610-17100629 None:intergenic 30.0%
! AATTTTGCATCCTGAAATAG+TGG - chr5.3:17101749-17101768 MS.gene028034:CDS 30.0%
! ATCGAATCCTTTTCATTTTC+TGG + chr5.3:17100375-17100394 None:intergenic 30.0%
! CTATTGTAAATTCCGGTTTT+TGG + chr5.3:17099949-17099968 None:intergenic 30.0%
! GTGTCTTCTTGTTTAATAAC+CGG + chr5.3:17100459-17100478 None:intergenic 30.0%
!! TTTTCTGGCACAGAAATAAT+AGG + chr5.3:17100360-17100379 None:intergenic 30.0%
!!! CCCTAATGTTGATTTTATAC+AGG - chr5.3:17100908-17100927 MS.gene028034:CDS 30.0%
AAAGTGGTAGATTGGAAAAG+TGG - chr5.3:17101156-17101175 MS.gene028034:intron 35.0%
AATCAACATTAGGGAAAGCT+TGG + chr5.3:17100902-17100921 None:intergenic 35.0%
AATTGGAATAGCAACAAGAC+AGG + chr5.3:17101439-17101458 None:intergenic 35.0%
ACACTACTAAGAGGATTCAA+TGG + chr5.3:17100246-17100265 None:intergenic 35.0%
ACGAAATCGATAACATCCTT+TGG + chr5.3:17101954-17101973 None:intergenic 35.0%
AGAGGTCCTTCAATTATGAA+AGG - chr5.3:17101219-17101238 MS.gene028034:CDS 35.0%
CATAAAATGGGAGTTTCACA+AGG - chr5.3:17100135-17100154 MS.gene028034:CDS 35.0%
CGACAATTGATAAAGATGGT+TGG - chr5.3:17101525-17101544 MS.gene028034:CDS 35.0%
GTTCTACAATCGTTGTAATG+CGG - chr5.3:17100688-17100707 MS.gene028034:intron 35.0%
TATCAAATACAAGGGCTTTC+AGG - chr5.3:17101619-17101638 MS.gene028034:CDS 35.0%
TGACATTGACGAGACTATTA+GGG - chr5.3:17100716-17100735 MS.gene028034:intron 35.0%
TTAGTCAAATCAATGGCTTC+TGG - chr5.3:17100108-17100127 MS.gene028034:intron 35.0%
TTCGCAACTATTCTTCACTA+GGG - chr5.3:17101109-17101128 MS.gene028034:intron 35.0%
TTCTGTGCCAGAAAATGAAA+AGG - chr5.3:17100365-17100384 MS.gene028034:intron 35.0%
TTGACATTGACGAGACTATT+AGG - chr5.3:17100715-17100734 MS.gene028034:intron 35.0%
TTGCCGATGTTCCATTTATA+TGG - chr5.3:17100630-17100649 MS.gene028034:intron 35.0%
TTGGAAGTAGAAGCAAAACA+AGG + chr5.3:17100164-17100183 None:intergenic 35.0%
TTTCGCAACTATTCTTCACT+AGG - chr5.3:17101108-17101127 MS.gene028034:intron 35.0%
! CTATTAGGTGTTATGTACCT+AGG - chr5.3:17100207-17100226 MS.gene028034:intron 35.0%
! GCTTCTGGTCTTCATAAAAT+GGG - chr5.3:17100123-17100142 MS.gene028034:CDS 35.0%
! TGTTGATGAAATTCGTAAGC+AGG - chr5.3:17100263-17100282 MS.gene028034:intron 35.0%
! TTGTTTTCTTCTGGTACTAC+TGG - chr5.3:17100489-17100508 MS.gene028034:CDS 35.0%
! TTTTCCATATATCAGTGCCA+AGG - chr5.3:17101866-17101885 MS.gene028034:CDS 35.0%
!! GAAGCCATTGATTTGACTAA+AGG + chr5.3:17100108-17100127 None:intergenic 35.0%
!! TGTTTAATAACCGGCTTTTG+AGG + chr5.3:17100450-17100469 None:intergenic 35.0%
!! TTTTTGGTGAATACCAAGGA+GGG + chr5.3:17099933-17099952 None:intergenic 35.0%
!!! ATTTTTTCTCACCCTCATGA+TGG - chr5.3:17100024-17100043 MS.gene028034:intron 35.0%
!!! TTAACCCTTTTTTTGTTGGC+AGG - chr5.3:17102075-17102094 MS.gene028034:CDS 35.0%
!!! TTTTTTCTCACCCTCATGAT+GGG - chr5.3:17100025-17100044 MS.gene028034:intron 35.0%
AACGATACAACGTCGAGAAA+AGG + chr5.3:17100003-17100022 None:intergenic 40.0%
ACAATAGTACACACTCTCCT+AGG - chr5.3:17099962-17099981 MS.gene028034:CDS 40.0%
ACAGCAACATCCACTATTTC+AGG + chr5.3:17101762-17101781 None:intergenic 40.0%
ACGATACAACGTCGAGAAAA+GGG + chr5.3:17100002-17100021 None:intergenic 40.0%
ACTTTGCGAACCTTCTTGAA+TGG + chr5.3:17102106-17102125 None:intergenic 40.0%
AGCAACCTGCCAACAAAAAA+AGG + chr5.3:17102083-17102102 None:intergenic 40.0%
ATTCAAGAAGGTTCGCAAAG+TGG - chr5.3:17102105-17102124 MS.gene028034:CDS 40.0%
CCCAGAAGAGGAATCAATAA+GGG + chr5.3:17100058-17100077 None:intergenic 40.0%
CCTTGGTATTCACCAAAAAC+CGG - chr5.3:17099934-17099953 MS.gene028034:CDS 40.0%
GCAACCTGCCAACAAAAAAA+GGG + chr5.3:17102082-17102101 None:intergenic 40.0%
GCTACGGGATTATTGTCATT+GGG - chr5.3:17100666-17100685 MS.gene028034:intron 40.0%
GGTTTATGGAATGACTGAGT+CGG - chr5.3:17101050-17101069 MS.gene028034:intron 40.0%
GTTTATGGAATGACTGAGTC+GGG - chr5.3:17101051-17101070 MS.gene028034:intron 40.0%
TCCCAGAAGAGGAATCAATA+AGG + chr5.3:17100059-17100078 None:intergenic 40.0%
TGCTACGGGATTATTGTCAT+TGG - chr5.3:17100665-17100684 MS.gene028034:intron 40.0%
TGGTTTATCGCTCTTTGCTA+CGG - chr5.3:17100650-17100669 MS.gene028034:intron 40.0%
TGTTGTTCCACCGATATTGT+CGG - chr5.3:17100770-17100789 MS.gene028034:intron 40.0%
! AAAGATGGTTGGCTACATAC+TGG - chr5.3:17101536-17101555 MS.gene028034:CDS 40.0%
! AGCAGTTTCTGAGTTGCTTT+CGG + chr5.3:17102174-17102193 None:intergenic 40.0%
! CTATGGTTGAGCTTTTTGTG+AGG - chr5.3:17100553-17100572 MS.gene028034:CDS 40.0%
! GCCGCTATATTGTTTTCTTC+TGG - chr5.3:17100480-17100499 MS.gene028034:CDS 40.0%
! GGCTTCTGGTCTTCATAAAA+TGG - chr5.3:17100122-17100141 MS.gene028034:CDS 40.0%
! GGGTGAGTGATGATATTTTG+TGG + chr5.3:17099913-17099932 None:intergenic 40.0%
! TAAGTTGCAGAGTTTGAGAC+AGG - chr5.3:17100827-17100846 MS.gene028034:intron 40.0%
! TAGTGGATGTTGCTGTTACA+GGG - chr5.3:17101766-17101785 MS.gene028034:CDS 40.0%
! TGGAAGTGTACTATCTCCAA+AGG - chr5.3:17101935-17101954 MS.gene028034:CDS 40.0%
! TTTTTCTCACCCTCATGATG+GGG - chr5.3:17100026-17100045 MS.gene028034:intron 40.0%
!! ATAGTGGATGTTGCTGTTAC+AGG - chr5.3:17101765-17101784 MS.gene028034:CDS 40.0%
!! CCCTTATTGATTCCTCTTCT+GGG - chr5.3:17100055-17100074 MS.gene028034:intron 40.0%
!! TATCGATTTCGTTGCTAAGC+AGG - chr5.3:17101962-17101981 MS.gene028034:CDS 40.0%
!! TCATCCTTGGCACTGATATA+TGG + chr5.3:17101873-17101892 None:intergenic 40.0%
!!! CTTTGTTTTGCCTCAAAAGC+CGG - chr5.3:17100437-17100456 MS.gene028034:intron 40.0%
!!! GTTTTTGGTGAATACCAAGG+AGG + chr5.3:17099934-17099953 None:intergenic 40.0%
ACAGCTTCTAAATCAGCAGG+AGG + chr5.3:17101726-17101745 None:intergenic 45.0%
ACAGGCAGAAAAGGTTCAAG+TGG + chr5.3:17101421-17101440 None:intergenic 45.0%
AGAAATGGAAGTCCCAGAAG+AGG + chr5.3:17100070-17100089 None:intergenic 45.0%
AGCAACAAGACAGGCAGAAA+AGG + chr5.3:17101430-17101449 None:intergenic 45.0%
AGCACAGCTTCTAAATCAGC+AGG + chr5.3:17101729-17101748 None:intergenic 45.0%
AGGGTTGTTAGCTCCAAACA+TGG - chr5.3:17101128-17101147 MS.gene028034:intron 45.0%
AGTGGGATTTGTGGTCAAGA+AGG - chr5.3:17101911-17101930 MS.gene028034:CDS 45.0%
ATATCATCACTCACCCTCCT+TGG - chr5.3:17099917-17099936 MS.gene028034:CDS 45.0%
ATGGTGTAACAACAGCACCT+AGG + chr5.3:17100227-17100246 None:intergenic 45.0%
CGTAAGCAGGTTAATGACTG+TGG - chr5.3:17100276-17100295 MS.gene028034:intron 45.0%
GAAAAGGTTCAAGTGGCTTG+AGG + chr5.3:17101414-17101433 None:intergenic 45.0%
GCTGTCAATGCCGACAATAT+CGG + chr5.3:17100783-17100802 None:intergenic 45.0%
GGATTTGTGGTCAAGAAGGT+TGG - chr5.3:17101915-17101934 MS.gene028034:CDS 45.0%
GGTTTATCGCTCTTTGCTAC+GGG - chr5.3:17100651-17100670 MS.gene028034:intron 45.0%
GTTGTTAGCTCCAAACATGG+AGG - chr5.3:17101131-17101150 MS.gene028034:intron 45.0%
TACAACGTCGAGAAAAGGGT+CGG + chr5.3:17099998-17100017 None:intergenic 45.0%
TCCAAACATGGAGGCAAAAG+TGG - chr5.3:17101140-17101159 MS.gene028034:intron 45.0%
TGGAGGCAAAAGTGGTAGAT+TGG - chr5.3:17101148-17101167 MS.gene028034:intron 45.0%
TTCTTGACCACAAATCCCAC+TGG + chr5.3:17101912-17101931 None:intergenic 45.0%
! AGTTTCTGAGTTGCTTTCGG+AGG + chr5.3:17102171-17102190 None:intergenic 45.0%
! TTGCAGAGTTTGAGACAGGT+CGG - chr5.3:17100831-17100850 MS.gene028034:intron 45.0%
!! ACCACTTTTGCCTCCATGTT+TGG + chr5.3:17101144-17101163 None:intergenic 45.0%
!! GCCCTTATTGATTCCTCTTC+TGG - chr5.3:17100054-17100073 MS.gene028034:intron 45.0%
!!! CCGGTTTTTGGTGAATACCA+AGG + chr5.3:17099937-17099956 None:intergenic 45.0%
!! TAATAAATATAAATACTAAA+AGG - chr5.3:17101272-17101291 MS.gene028034:CDS 5.0%
AAGATTCCGAGGTCTGTGAC+TGG - chr5.3:17102139-17102158 MS.gene028034:CDS 50.0%
AGATTCCGAGGTCTGTGACT+GGG - chr5.3:17102140-17102159 MS.gene028034:CDS 50.0%
AGGGCTAAAACCCCATCATG+AGG + chr5.3:17100039-17100058 None:intergenic 50.0%
AGTGCCAAGGATGAAGAAGC+TGG - chr5.3:17101879-17101898 MS.gene028034:CDS 50.0%
ATCTTCCCAGTCACAGACCT+CGG + chr5.3:17102148-17102167 None:intergenic 50.0%
ATGACTGAGTCGGGTGCATT+AGG - chr5.3:17101060-17101079 MS.gene028034:intron 50.0%
CACAGACCTCGGAATCTTGT+CGG + chr5.3:17102137-17102156 None:intergenic 50.0%
GCAGGTTGCTCCATTCAAGA+AGG - chr5.3:17102093-17102112 MS.gene028034:CDS 50.0%
GGAGATTCCAGTGGGATTTG+TGG - chr5.3:17101902-17101921 MS.gene028034:CDS 50.0%
GGGCTAAAACCCCATCATGA+GGG + chr5.3:17100038-17100057 None:intergenic 50.0%
GGTACTACTGGTGTGAGCAA+AGG - chr5.3:17100501-17100520 MS.gene028034:CDS 50.0%
GTCAATGCCGACAATATCGG+TGG + chr5.3:17100780-17100799 None:intergenic 50.0%
GTGCCAAGGATGAAGAAGCT+GGG - chr5.3:17101880-17101899 MS.gene028034:CDS 50.0%
TCTTCACCGACAAGATTCCG+AGG - chr5.3:17102128-17102147 MS.gene028034:CDS 50.0%
TGCCAAGGATGAAGAAGCTG+GGG - chr5.3:17101881-17101900 MS.gene028034:CDS 50.0%
! AGTGGTGAGCTTTGGTTGAG+AGG - chr5.3:17101201-17101220 MS.gene028034:CDS 50.0%
! GCATTGACAGCGAAGGCAAA+GGG - chr5.3:17100792-17100811 MS.gene028034:intron 50.0%
! GCGAAGGCAAAGGGTGTAAA+TGG - chr5.3:17100801-17100820 MS.gene028034:intron 50.0%
! TTTTTGCCACCAGGCAGAAG+TGG - chr5.3:17101183-17101202 MS.gene028034:CDS 50.0%
!! ATTGTCGGCATTGACAGCGA+AGG - chr5.3:17100785-17100804 MS.gene028034:intron 50.0%
!!! AGTGGTGCTTTTTTGCCACC+AGG - chr5.3:17101174-17101193 MS.gene028034:CDS 50.0%
ACGTCGAGAAAAGGGTCGGT+CGG + chr5.3:17099994-17100013 None:intergenic 55.0%
AGAAGCTGGGGAGATTCCAG+TGG - chr5.3:17101893-17101912 MS.gene028034:CDS 55.0%
CAAAGCTCACCACTTCTGCC+TGG + chr5.3:17101195-17101214 None:intergenic 55.0%
CAGGCAGAAGTGGTGAGCTT+TGG - chr5.3:17101193-17101212 MS.gene028034:CDS 55.0%
CTCCCCAGCTTCTTCATCCT+TGG + chr5.3:17101886-17101905 None:intergenic 55.0%
GAAGCTGGGGAGATTCCAGT+GGG - chr5.3:17101894-17101913 MS.gene028034:CDS 55.0%
! TCGGGTGCATTAGGAGCATG+CGG - chr5.3:17101069-17101088 MS.gene028034:intron 55.0%
!! GGCATTGACAGCGAAGGCAA+AGG - chr5.3:17100791-17100810 MS.gene028034:intron 55.0%
AGCTCACCACTTCTGCCTGG+TGG + chr5.3:17101192-17101211 None:intergenic 60.0%
CGAGAAAAGGGTCGGTCGGA+AGG + chr5.3:17099990-17100009 None:intergenic 60.0%
GGGTCGGTCGGAAGGCTCCT+AGG + chr5.3:17099982-17100001 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 17099883 17102210 17099883 ID=MS.gene028034
chr5.3 mRNA 17099883 17102210 17099883 ID=MS.gene028034.t1;Parent=MS.gene028034
chr5.3 exon 17101164 17102210 17101164 ID=MS.gene028034.t1.exon1;Parent=MS.gene028034.t1
chr5.3 CDS 17101164 17102210 17101164 ID=cds.MS.gene028034.t1;Parent=MS.gene028034.t1
chr5.3 exon 17100853 17101042 17100853 ID=MS.gene028034.t1.exon2;Parent=MS.gene028034.t1
chr5.3 CDS 17100853 17101042 17100853 ID=cds.MS.gene028034.t1;Parent=MS.gene028034.t1
chr5.3 exon 17100453 17100598 17100453 ID=MS.gene028034.t1.exon3;Parent=MS.gene028034.t1
chr5.3 CDS 17100453 17100598 17100453 ID=cds.MS.gene028034.t1;Parent=MS.gene028034.t1
chr5.3 exon 17100306 17100373 17100306 ID=MS.gene028034.t1.exon4;Parent=MS.gene028034.t1
chr5.3 CDS 17100306 17100373 17100306 ID=cds.MS.gene028034.t1;Parent=MS.gene028034.t1
chr5.3 exon 17100110 17100212 17100110 ID=MS.gene028034.t1.exon5;Parent=MS.gene028034.t1
chr5.3 CDS 17100110 17100212 17100110 ID=cds.MS.gene028034.t1;Parent=MS.gene028034.t1
chr5.3 exon 17099883 17099996 17099883 ID=MS.gene028034.t1.exon6;Parent=MS.gene028034.t1
chr5.3 CDS 17099883 17099996 17099883 ID=cds.MS.gene028034.t1;Parent=MS.gene028034.t1
Gene Sequence

>MS.gene028034

ATGGCTGCAAATTTCAACTATGACATGCCACAAAATATCATCACTCACCCTCCTTGGTATTCACCAAAAACCGGAATTTACAATAGTACACACTCTCCTAGGAGCCTTCCGACCGACCCTTTTCTCGACGTTGTATCGTTCATTTTTTCTCACCCTCATGATGGGGTTTTAGCCCTTATTGATTCCTCTTCTGGGACTTCCATTTCTTACTCAAAGTTGTTACCTTTAGTCAAATCAATGGCTTCTGGTCTTCATAAAATGGGAGTTTCACAAGGTGACCTTGTTTTGCTTCTACTTCCAAATTCAATTTACTATCCCATTGTACTATTAGGTGTTATGTACCTAGGTGCTGTTGTTACACCATTGAATCCTCTTAGTAGTGTTGATGAAATTCGTAAGCAGGTTAATGACTGTGGTGTGAGTTTTGCTTTTACTATACCTGAAAATGTTAAGAAATTAGAACCATTAGGCATTCCTATTATTTCTGTGCCAGAAAATGAAAAGGATTCGATGAATGATTGTTTCTCATGTTTTTTTAACCTGATTTCTGGTAACTTTGTTTTGCCTCAAAAGCCGGTTATTAAACAAGAAGACACTGCCGCTATATTGTTTTCTTCTGGTACTACTGGTGTGAGCAAAGGAGTTGTTTTAACTCATAGAAATCTTATTGCTATGGTTGAGCTTTTTGTGAGGTTTGAAGCTTCTCAATATGAATACTCTAGTTCCAAAAATGTGTATCTAGCTGTTTTGCCGATGTTCCATTTATATGGTTTATCGCTCTTTGCTACGGGATTATTGTCATTGGGTTCTACAATCGTTGTAATGCGGAAATTTGACATTGACGAGACTATTAGGGTGATCGATAAATATAATGTTACACATTTTCATGTTGTTCCACCGATATTGTCGGCATTGACAGCGAAGGCAAAGGGTGTAAATGGAAGTAAGTTGCAGAGTTTGAGACAGGTCGGTTCTAGTGCAGCGCCTTTAAGCACAAAAGCTATAAATGATTTTGTCCAAGCTTTCCCTAATGTTGATTTTATACAGGTAAAAACCTCAGAATAAAATAGTCTTATTTAAAGAATGCAAGTCATGATCCATCATTCAAATAATGTTGTTTTCCTAGATTTTTTTAAGGATGTGCAGATGTAAAATTGTTTCTTTTTAGGTTTATGGAATGACTGAGTCGGGTGCATTAGGAGCATGCGGTTTCAATACAGAAAAATTTCGCAACTATTCTTCACTAGGGTTGTTAGCTCCAAACATGGAGGCAAAAGTGGTAGATTGGAAAAGTGGTGCTTTTTTGCCACCAGGCAGAAGTGGTGAGCTTTGGTTGAGAGGTCCTTCAATTATGAAAGGTAAAAATAATCTGCATTTTTTATGAATAGATAATAAATATAAATACTAAAAGGATAACATGGTAATATAAAGGTTTTATCTATTGTGTGGAATCTTAATCTACATTAGCATGAGATTGATTCAATGATTTCAACTGTTTTGTTGCTGTAACTTTTGTTTCTTTCTTATTCCTCAAGCCACTTGAACCTTTTCTGCCTGTCTTGTTGCTATTCCAATTGAAATTATTAATCAAACTTTTTCCTTAATTTCTTAGGATACTTGAATAATAAGGAAGCTACAATGTCGACAATTGATAAAGATGGTTGGCTACATACTGGAGATATTGTTTATTTTGATCAAGATGGATATTTATATTTGTCTGACCGCTTGAAAGAATTTATCAAATACAAGGGCTTTCAGGTATCAATTTATTTTACAGTTTATTTTTAATCAATTTGTATGCAATATGTTCTTATGTATATCACACATGCTGTTACAGATTCCTCCTGCTGATTTAGAAGCTGTGCTAATTTTGCATCCTGAAATAGTGGATGTTGCTGTTACAGGGTAAGTATATGAACTCTTCATTTATGTCTTCTAAGATGCCTCTTTAGACATTTAAATATAACCTTAAGTGTTTCATCATTTTCCATATATCAGTGCCAAGGATGAAGAAGCTGGGGAGATTCCAGTGGGATTTGTGGTCAAGAAGGTTGGAAGTGTACTATCTCCAAAGGATGTTATCGATTTCGTTGCTAAGCAGGTTCTTCTTTATAAGACAGACATGAGATCTATGATATTTGAATTAATGTCACTACTTGAATCAATGTTAGTATTGGAATGGTTTTCAAATTTTAACCCTTTTTTTGTTGGCAGGTTGCTCCATTCAAGAAGGTTCGCAAAGTGGTCTTCACCGACAAGATTCCGAGGTCTGTGACTGGGAAGATCCTCCGAAAGCAACTCAGAAACTGCTTGCCTTCTAAACTCTAA
Protein sequence

>MS.gene028034.t1

MAANFNYDMPQNIITHPPWYSPKTGIYNSTHSPRSLPTDPFLDVVSFIFSHPHDGVLALIDSSSGTSISYSKLLPLVKSMASGLHKMGVSQGDLVLLLLPNSIYYPIVLLGVMYLGAVVTPLNPLSSVDEIRKQVNDCGVSFAFTIPENVKKLEPLGIPIISVPENEKDSMNDCFSCFFNLISGNFVLPQKPVIKQEDTAAILFSSGTTGVSKGVVLTHRNLIAMVELFVRFEASQYEYSSSKNVYLAVLPMFHLYGLSLFATGLLSLGSTIVVMRKFDIDETIRVIDKYNVTHFHVVPPILSALTAKAKGVNGSKLQSLRQVGSSAAPLSTKAINDFVQAFPNVDFIQVYGMTESGALGACGFNTEKFRNYSSLGLLAPNMEAKVVDWKSGAFLPPGRSGELWLRGPSIMKGYLNNKEATMSTIDKDGWLHTGDIVYFDQDGYLYLSDRLKEFIKYKGFQIPPADLEAVLILHPEIVDVAVTGAKDEEAGEIPVGFVVKKVGSVLSPKDVIDFVAKQVAPFKKVRKVVFTDKIPRSVTGKILRKQLRNCLPSKL