AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94953

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94953.t1 MTR_3g460770 96.931 554 16 1 1 554 1 553 0.0 1099
MS.gene94953.t1 MTR_2g105570 39.154 544 311 9 10 538 7 545 1.52e-136 407
MS.gene94953.t1 MTR_4g005750 39.179 536 314 7 11 538 7 538 1.06e-128 387
MS.gene94953.t1 MTR_5g007640 37.338 541 318 8 11 538 51 583 1.09e-124 378
MS.gene94953.t1 MTR_4g128337 38.333 540 319 6 10 540 12 546 2.17e-121 369
MS.gene94953.t1 MTR_4g057730 35.424 542 332 8 13 545 9 541 1.86e-119 363
MS.gene94953.t1 MTR_2g095510 36.431 538 329 7 12 542 8 539 1.88e-116 355
MS.gene94953.t1 MTR_1g026310 34.608 549 317 9 8 532 20 550 2.73e-113 348
MS.gene94953.t1 MTR_1g090737 38.247 502 298 5 36 532 62 556 5.04e-113 348
MS.gene94953.t1 MTR_1g063120 35.110 544 319 10 23 542 22 555 3.73e-105 327
MS.gene94953.t1 MTR_8g039720 35.229 545 321 12 8 532 17 549 8.34e-103 321
MS.gene94953.t1 MTR_1g063110 34.026 529 334 8 16 532 13 538 1.05e-98 310
MS.gene94953.t1 MTR_4g077900 36.983 484 287 9 70 542 2 478 2.02e-98 307
MS.gene94953.t1 MTR_4g057730 34.615 468 292 7 13 471 9 471 9.36e-98 305
MS.gene94953.t1 MTR_5g027480 34.637 537 335 8 15 542 26 555 2.64e-97 306
MS.gene94953.t1 MTR_3g088870 34.600 500 301 8 44 532 64 548 2.29e-94 299
MS.gene94953.t1 MTR_3g088880 34.949 495 303 8 44 532 65 546 6.10e-94 298
MS.gene94953.t1 MTR_5g027500 33.761 545 341 8 15 542 27 568 1.49e-88 284
MS.gene94953.t1 MTR_4g057730 33.184 446 284 7 13 449 9 449 1.09e-86 276
MS.gene94953.t1 MTR_1g073180 35.630 508 312 9 34 539 37 531 1.83e-86 278
MS.gene94953.t1 MTR_2g095510 33.933 445 281 7 12 449 8 446 1.55e-82 265
MS.gene94953.t1 MTR_1g073180 35.135 481 297 9 34 512 59 526 5.79e-78 255
MS.gene94953.t1 MTR_1g026430 28.500 400 244 9 8 383 20 401 1.48e-52 184
MS.gene94953.t1 MTR_1g026470 28.607 402 245 9 8 385 20 403 1.92e-52 184
MS.gene94953.t1 MTR_1569s0010 26.848 514 334 10 57 535 22 528 3.13e-52 186
MS.gene94953.t1 MTR_3g035130 27.108 498 335 12 57 541 32 514 7.76e-52 185
MS.gene94953.t1 MTR_0803s0020 26.369 493 319 13 59 528 263 734 6.05e-44 168
MS.gene94953.t1 MTR_5g008800 26.642 548 355 16 34 553 19 547 8.63e-42 158
MS.gene94953.t1 MTR_3g035130 27.294 436 289 12 57 479 32 452 1.28e-40 153
MS.gene94953.t1 MTR_5g076240 27.992 518 318 17 58 536 41 542 5.73e-40 153
MS.gene94953.t1 MTR_3g064420 25.490 561 331 16 34 537 19 549 4.10e-39 151
MS.gene94953.t1 MTR_8g074040 24.067 536 358 15 34 537 61 579 1.13e-38 150
MS.gene94953.t1 MTR_5g008820 25.271 554 355 16 34 554 19 546 5.01e-38 147
MS.gene94953.t1 MTR_2g044180 26.217 534 320 15 58 540 47 557 6.77e-38 147
MS.gene94953.t1 MTR_4g121600 26.426 526 329 16 58 540 47 557 6.10e-35 139
MS.gene94953.t1 MTR_8g074120 28.101 395 250 14 160 537 113 490 1.04e-34 137
MS.gene94953.t1 MTR_8g074040 25.806 434 286 13 127 537 41 461 3.13e-34 135
MS.gene94953.t1 MTR_5g023730 25.326 537 352 16 34 538 21 540 7.48e-32 129
MS.gene94953.t1 MTR_2g044180 27.842 431 249 13 149 540 59 466 9.94e-32 128
MS.gene94953.t1 MTR_5g076220 25.184 544 347 17 34 536 19 543 2.78e-30 125
MS.gene94953.t1 MTR_5g076200 24.678 543 351 19 34 536 19 543 1.15e-27 117
MS.gene94953.t1 MTR_0161s0050 23.519 574 361 20 14 536 3 549 1.01e-25 111
MS.gene94953.t1 MTR_4g011790 25.676 370 241 12 192 536 233 593 1.64e-23 105
MS.gene94953.t1 MTR_4g011790 25.895 363 235 12 192 529 233 586 1.16e-22 102
MS.gene94953.t1 MTR_4g013210 24.665 373 245 11 192 536 76 440 2.41e-22 100
MS.gene94953.t1 MTR_2g030240 23.713 544 341 16 58 547 29 552 6.43e-22 99.8
MS.gene94953.t1 MTR_1054s0020 23.782 513 348 17 42 537 281 767 2.37e-21 98.6
MS.gene94953.t1 MTR_4g011790 25.066 379 241 13 192 536 233 602 2.99e-21 98.2
MS.gene94953.t1 MTR_4g013210 25.617 324 215 10 192 497 228 543 1.19e-20 95.9
MS.gene94953.t1 MTR_4g057755 46.667 75 40 0 398 472 46 120 3.58e-20 87.0
MS.gene94953.t1 MTR_2g030240 24.433 397 242 11 192 547 79 458 5.29e-20 93.2
MS.gene94953.t1 MTR_4g013210 23.967 363 219 10 192 536 76 399 2.11e-19 90.9
MS.gene94953.t1 MTR_1g104810 33.889 180 99 8 293 459 396 568 2.46e-19 92.4
MS.gene94953.t1 MTR_1g104810 33.889 180 99 8 293 459 329 501 2.49e-19 92.0
MS.gene94953.t1 MTR_7g109830 26.482 506 264 23 48 469 66 547 3.44e-19 91.7
MS.gene94953.t1 MTR_7g084850 22.342 555 365 17 43 544 185 726 4.54e-19 91.7
MS.gene94953.t1 MTR_4g013210 23.967 363 219 10 192 536 228 551 5.56e-19 90.9
MS.gene94953.t1 MTR_5g009360 26.389 360 202 16 162 469 75 423 3.39e-18 88.2
MS.gene94953.t1 MTR_1g026350 28.571 126 88 1 15 140 26 149 4.07e-18 82.4
MS.gene94953.t1 MTR_5g009360 26.389 360 202 16 162 469 201 549 4.50e-18 88.2
MS.gene94953.t1 MTR_8g083170 36.735 196 105 7 330 512 475 664 6.38e-18 87.8
MS.gene94953.t1 MTR_5g009350 26.536 358 204 14 162 469 201 549 4.12e-17 85.1
MS.gene94953.t1 MTR_5g009350 26.536 358 204 14 162 469 201 549 4.33e-17 85.1
MS.gene94953.t1 MTR_3g084470 36.000 175 98 5 330 493 468 639 4.54e-17 85.1
MS.gene94953.t1 MTR_5g009350 26.257 358 205 14 162 469 201 549 4.85e-17 84.7
MS.gene94953.t1 MTR_5g009350 26.462 359 205 14 162 470 201 550 5.29e-17 84.7
MS.gene94953.t1 MTR_8g099420 25.770 357 200 14 162 465 202 546 9.78e-17 84.0
MS.gene94953.t1 MTR_3g084450 35.593 177 97 6 330 493 264 436 9.64e-16 80.5
MS.gene94953.t1 MTR_3g084450 35.593 177 97 6 330 493 472 644 1.42e-15 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94953.t1 AT1G62940 72.744 532 142 2 10 539 7 537 0.0 786
MS.gene94953.t1 AT3G21240 37.687 536 321 6 12 538 19 550 1.75e-128 387
MS.gene94953.t1 AT1G65060 37.970 532 319 6 14 538 33 560 7.86e-125 378
MS.gene94953.t1 AT4G05160 36.900 542 324 8 13 542 9 544 1.86e-123 374
MS.gene94953.t1 AT1G20480 37.912 546 316 7 11 542 29 565 4.20e-122 371
MS.gene94953.t1 AT1G20510 35.564 523 326 7 16 532 17 534 2.21e-121 369
MS.gene94953.t1 AT3G21230 36.528 553 326 8 6 538 17 564 1.44e-116 357
MS.gene94953.t1 AT1G51680 36.920 539 320 8 15 538 24 557 7.48e-115 352
MS.gene94953.t1 AT3G21240 37.393 468 280 6 12 470 19 482 2.83e-107 330
MS.gene94953.t1 AT3G21240 37.393 468 280 6 12 470 19 482 2.83e-107 330
MS.gene94953.t1 AT5G63380 38.571 490 286 9 48 532 69 548 1.94e-105 328
MS.gene94953.t1 AT3G21230 35.917 529 308 9 6 514 17 534 5.16e-103 321
MS.gene94953.t1 AT1G51680 36.508 504 300 8 15 503 24 522 9.46e-102 318
MS.gene94953.t1 AT4G19010 37.132 509 307 10 42 542 59 562 3.42e-101 317
MS.gene94953.t1 AT1G20500 31.707 533 348 8 8 532 16 540 6.14e-101 316
MS.gene94953.t1 AT5G38120 32.902 541 335 9 16 542 24 550 8.15e-100 313
MS.gene94953.t1 AT1G20510 33.550 462 296 7 16 471 17 473 3.92e-98 306
MS.gene94953.t1 AT3G21230 36.082 485 285 8 6 470 17 496 6.06e-94 296
MS.gene94953.t1 AT1G51680 36.093 471 281 8 15 470 24 489 8.79e-93 293
MS.gene94953.t1 AT1G65060 34.831 445 279 6 14 451 33 473 4.57e-91 288
MS.gene94953.t1 AT5G38120 32.072 502 313 9 16 503 24 511 1.12e-86 278
MS.gene94953.t1 AT1G20510 31.818 440 289 7 16 449 17 451 9.05e-86 274
MS.gene94953.t1 AT5G38120 32.340 470 290 9 16 471 24 479 1.00e-79 258
MS.gene94953.t1 AT5G38120 32.340 470 290 9 16 471 24 479 1.00e-79 258
MS.gene94953.t1 AT3G21230 30.769 416 263 9 10 405 21 431 1.97e-52 185
MS.gene94953.t1 AT1G20490 27.400 427 280 10 8 418 16 428 1.57e-51 183
MS.gene94953.t1 AT1G20490 27.400 427 280 10 8 418 16 428 1.57e-51 183
MS.gene94953.t1 AT3G48990 28.215 521 344 12 35 541 9 513 1.51e-48 176
MS.gene94953.t1 AT1G21530 26.703 558 344 16 23 536 5 541 3.82e-41 156
MS.gene94953.t1 AT1G21530 26.703 558 346 16 23 536 5 543 1.13e-40 155
MS.gene94953.t1 AT1G21540 26.655 559 346 15 23 536 5 544 2.33e-39 151
MS.gene94953.t1 AT5G16370 26.248 541 341 18 34 536 19 539 3.84e-39 150
MS.gene94953.t1 AT5G16340 26.958 549 340 19 34 541 19 547 4.47e-39 150
MS.gene94953.t1 AT1G77240 25.885 537 358 16 29 536 14 539 7.61e-39 150
MS.gene94953.t1 AT1G20560 27.122 542 336 17 34 537 21 541 3.61e-37 145
MS.gene94953.t1 AT1G75960 27.574 544 340 16 29 536 14 539 3.72e-37 145
MS.gene94953.t1 AT2G17650 25.045 551 352 16 34 540 66 599 1.01e-36 144
MS.gene94953.t1 AT1G65890 25.760 559 364 15 34 552 19 566 1.51e-35 140
MS.gene94953.t1 AT1G65880 25.919 544 351 15 34 536 19 551 3.66e-35 139
MS.gene94953.t1 AT1G66120 24.767 537 358 14 34 536 19 543 6.08e-35 139
MS.gene94953.t1 AT1G76290 27.407 540 340 19 34 542 19 537 4.65e-31 127
MS.gene94953.t1 AT1G20560 28.496 379 231 11 180 537 104 463 5.95e-31 126
MS.gene94953.t1 AT3G16910 25.933 536 320 19 58 540 49 560 5.15e-30 124
MS.gene94953.t1 AT1G68270 24.119 539 326 16 34 531 19 515 8.59e-30 123
MS.gene94953.t1 AT5G27600 28.779 344 185 15 161 457 239 569 2.85e-25 110
MS.gene94953.t1 AT3G16170 21.328 497 352 10 70 538 119 604 1.23e-23 105
MS.gene94953.t1 AT1G30520 22.744 554 349 13 47 543 23 554 2.79e-23 104
MS.gene94953.t1 AT1G30520 22.744 554 349 13 47 543 23 554 2.79e-23 104
MS.gene94953.t1 AT3G05970 29.630 324 170 11 181 457 257 569 5.38e-23 103
MS.gene94953.t1 AT1G64400 25.610 492 284 20 49 469 70 550 1.10e-21 99.8
MS.gene94953.t1 AT4G23850 25.455 495 281 21 49 469 70 550 1.03e-19 93.6
MS.gene94953.t1 AT2G47240 23.818 550 321 20 58 521 78 615 4.27e-17 85.1
MS.gene94953.t1 AT2G47240 23.818 550 321 20 58 521 78 615 4.27e-17 85.1
MS.gene94953.t1 AT2G47240 23.818 550 321 20 58 521 78 615 4.27e-17 85.1
MS.gene94953.t1 AT1G49430 23.722 489 291 21 38 455 60 537 5.21e-17 85.1
MS.gene94953.t1 AT1G30520 22.395 451 285 10 47 454 23 451 6.72e-15 77.8
MS.gene94953.t1 AT1G30520 22.395 451 285 10 47 454 23 451 6.72e-15 77.8
MS.gene94953.t1 AT2G47240 29.958 237 141 10 305 521 325 556 7.90e-14 74.7
MS.gene94953.t1 AT3G23790 32.164 171 92 5 330 479 473 640 1.36e-13 74.3
MS.gene94953.t1 AT4G14070 31.481 162 97 4 330 480 489 647 4.20e-13 72.8
MS.gene94953.t1 AT4G14070 26.556 241 149 7 27 241 95 333 1.70e-12 70.9

Find 111 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTTTCATCCTTCCGAATT+TGG 0.115535 3.1:+44619763 MS.gene94953:CDS
CACCATATAGTTCAGCATTT+TGG 0.132681 3.1:-44618398 None:intergenic
GCTATTTGTGACAATTAATT+TGG 0.178651 3.1:-44618676 None:intergenic
ATGGCATACTGTACAATATT+TGG 0.203269 3.1:-44618555 None:intergenic
ATTGTTCCACCTATTATTCT+TGG 0.237238 3.1:+44619217 MS.gene94953:CDS
ATTGGAAAAGTCACTACATT+AGG 0.245143 3.1:+44619049 MS.gene94953:CDS
GCATTGCACAAAGGTCATTT+TGG 0.245241 3.1:-44618922 None:intergenic
TTAACCAATCCAAGAATAAT+AGG 0.258003 3.1:-44619226 None:intergenic
GAAGATGGTGGAAAAGATTA+AGG 0.261374 3.1:+44620853 MS.gene94953:CDS
AATCTTTGTTCTACACTCTT+TGG 0.286307 3.1:+44619010 MS.gene94953:CDS
GAATATGTTGTGCTACTATT+AGG 0.304795 3.1:+44619107 MS.gene94953:CDS
CATGATTCCCAAAGCAATAA+TGG 0.317628 3.1:-44618574 None:intergenic
TCCTTTGAACATAAGTTTCC+TGG 0.330815 3.1:+44619340 MS.gene94953:CDS
CAGTATGCCATTATTGCTTT+GGG 0.333061 3.1:+44618567 MS.gene94953:CDS
ACAGTATGCCATTATTGCTT+TGG 0.336417 3.1:+44618566 MS.gene94953:CDS
AGTTCCCCTGGTGTGTTCCT+TGG 0.340867 3.1:-44619824 None:intergenic
TCAAAGGAAGTAAGTAATTC+AGG 0.346829 3.1:-44619325 None:intergenic
GGTCTCTTGGTTTGAGAAAA+GGG 0.362079 3.1:+44618511 MS.gene94953:CDS
GTTCCCCTGGTGTGTTCCTT+GGG 0.362580 3.1:-44619823 None:intergenic
ATTTCCCCTGCCTCTTCATC+TGG 0.378428 3.1:-44620662 None:intergenic
AGGTCTCTTGGTTTGAGAAA+AGG 0.379071 3.1:+44618510 MS.gene94953:CDS
TCATCTCCTAGCACAATAAC+AGG 0.379300 3.1:-44618815 None:intergenic
CTCCAAAATGCTGAACTATA+TGG 0.388619 3.1:+44618396 MS.gene94953:CDS
ATAAACTTGACTTCCAAATT+CGG 0.392960 3.1:-44619776 None:intergenic
GGTTGCTCCTGCAGAGTTAG+AGG 0.394433 3.1:+44620330 MS.gene94953:intron
GTACCGGAACGGGCGAATAT+TGG 0.396199 3.1:-44618344 None:intergenic
TCCACCTATTATTCTTGGAT+TGG 0.398159 3.1:+44619222 MS.gene94953:CDS
GGTGTAACACAAGAAATGAT+TGG 0.398343 3.1:+44619031 MS.gene94953:CDS
GCTATACCAAAATCACCTTC+TGG 0.399912 3.1:+44620803 MS.gene94953:CDS
AAGTTTATTGATCCTGAAAC+AGG 0.400350 3.1:+44619791 MS.gene94953:CDS
ACCTGAAAATGTAACATTGC+CGG 0.414752 3.1:+44618365 MS.gene94953:CDS
CCCTGGTGTGTTCCTTGGGA+GGG 0.417573 3.1:-44619819 None:intergenic
CATTATTGCTTTGGGAATCA+TGG 0.418941 3.1:+44618575 MS.gene94953:CDS
TTGGAAAAGTCACTACATTA+GGG 0.421139 3.1:+44619050 MS.gene94953:CDS
CCTGTTGTGCCTGATGAAAA+TGG 0.423310 3.1:-44618944 None:intergenic
TCAAAGGCTTTAAGGTCTCT+TGG 0.427536 3.1:+44618498 MS.gene94953:CDS
AGAATAATAGGTGGAACAAT+AGG 0.427941 3.1:-44619214 None:intergenic
TGGTGATAAGGTTGCATTTG+TGG 0.435222 3.1:+44618416 MS.gene94953:CDS
AGATCAAATTGATCAACAAT+AGG 0.441187 3.1:-44619253 None:intergenic
TAGCCAATATTCGCCCGTTC+CGG 0.441770 3.1:+44618341 MS.gene94953:CDS
AACTTCTTGAAGCCGGAGAC+CGG 0.442959 3.1:+44618867 MS.gene94953:CDS
TAGAACAAAGATTTGCTACT+AGG 0.446233 3.1:-44619000 None:intergenic
TTTCACATTTATGGCATCAC+TGG 0.449930 3.1:+44619085 MS.gene94953:CDS
AGTGAGAGTGGTTCACTTTG+TGG 0.451776 3.1:+44620778 MS.gene94953:CDS
ATCATTCCCTGCCCGGTCTC+CGG 0.452974 3.1:-44618879 None:intergenic
TTGATACAGGTGAAAAGTCT+AGG 0.462276 3.1:+44618788 MS.gene94953:intron
ATTTCCGACGTATGTGAAGC+TGG 0.470134 3.1:-44618627 None:intergenic
AAAATTCTTAGACTTTGTTA+GGG 0.471032 3.1:-44620885 None:intergenic
GGGTTACCTGTTATTGTGCT+AGG 0.479109 3.1:+44618809 MS.gene94953:CDS
TCATTGAATCATTCCCTGCC+CGG 0.482487 3.1:-44618886 None:intergenic
CTTCTCACACAAAGTTCCCC+TGG 0.483470 3.1:-44619836 None:intergenic
CTTGAAGCCGGAGACCGGGC+AGG 0.484775 3.1:+44618872 MS.gene94953:CDS
GATGCTGGTTGTGTGTTCTC+AGG 0.486269 3.1:+44618597 MS.gene94953:CDS
CTCAAAACAACACTTGCAGC+CGG 0.487240 3.1:-44620686 None:intergenic
TGTGACTTCATGTGTAATCA+AGG 0.491977 3.1:-44619185 None:intergenic
TGGCTTCACACCGGTGACAT+TGG 0.499305 3.1:+44620085 MS.gene94953:CDS
CCCCTGGTGTGTTCCTTGGG+AGG 0.500432 3.1:-44619820 None:intergenic
TGCTGAACTATATGGTGATA+AGG 0.502771 3.1:+44618404 MS.gene94953:CDS
AAATAGCTCAAGCCATGAAA+AGG 0.506415 3.1:+44618692 MS.gene94953:CDS
TTGTTGAAGATGCTATGAAC+TGG 0.506560 3.1:+44618840 MS.gene94953:CDS
AAAATAGCCTCTAACTCTGC+AGG 0.509463 3.1:-44620337 None:intergenic
GTGCTACTATTAGGAACAAA+GGG 0.510895 3.1:+44619116 MS.gene94953:CDS
GTGGATGCTGAGAGTGGAAA+AGG 0.515304 3.1:+44618435 MS.gene94953:CDS
GCTTTGGGAATCATGGATGC+TGG 0.516352 3.1:+44618582 MS.gene94953:CDS
TAACATATAGTGAGGTTGTG+AGG 0.520474 3.1:+44618460 MS.gene94953:CDS
CAAAGGGAAAGTAGTGGTGA+TGG 0.526343 3.1:+44619132 MS.gene94953:CDS
AGATTACCAGATGAAGAGGC+AGG 0.529521 3.1:+44620656 MS.gene94953:intron
TGAAGAGGCAGGGGAAATCC+CGG 0.534399 3.1:+44620667 MS.gene94953:CDS
GTTCAGATTACCAGATGAAG+AGG 0.538232 3.1:+44620652 MS.gene94953:intron
ACCAGGAAACTTATGTTCAA+AGG 0.540093 3.1:-44619341 None:intergenic
TCAAAACAACACTTGCAGCC+GGG 0.549405 3.1:-44620685 None:intergenic
AAGGCTTGTCAAAGAGAAGA+TGG 0.550369 3.1:+44620838 MS.gene94953:CDS
ACTTCTTGAAGCCGGAGACC+GGG 0.555334 3.1:+44618868 MS.gene94953:CDS
TCCTGGTGTTCTTGTCCAAG+AGG 0.557522 3.1:+44619357 MS.gene94953:CDS
TGGAACAAACTTCTTGAAGC+CGG 0.560308 3.1:+44618860 MS.gene94953:CDS
GTCTATGAATCCAATGTCAC+CGG 0.561854 3.1:-44620095 None:intergenic
AAAGGGAAAGTAGTGGTGAT+GGG 0.563703 3.1:+44619133 MS.gene94953:CDS
GGCACAACAGGAATGTCAAA+GGG 0.563766 3.1:+44618956 MS.gene94953:CDS
AACATATAGTGAGGTTGTGA+GGG 0.566326 3.1:+44618461 MS.gene94953:CDS
AGGCACAACAGGAATGTCAA+AGG 0.574039 3.1:+44618955 MS.gene94953:CDS
AAGGAGTTGATTAAATACAA+AGG 0.576483 3.1:+44620151 MS.gene94953:CDS
GGCAGGGAATGATTCAATGA+AGG 0.578185 3.1:+44618889 MS.gene94953:CDS
GATTACCTTGCATTACACAT+TGG 0.583044 3.1:-44619859 None:intergenic
TTGAAGCCGGAGACCGGGCA+GGG 0.584887 3.1:+44618873 MS.gene94953:CDS
ACTTGACTTCCAAATTCGGA+AGG 0.585552 3.1:-44619772 None:intergenic
TGTGCTACTATTAGGAACAA+AGG 0.589937 3.1:+44619115 MS.gene94953:CDS
CCCTCCCAAGGAACACACCA+GGG 0.592620 3.1:+44619819 MS.gene94953:CDS
TGATACAGGTGAAAAGTCTA+GGG 0.594118 3.1:+44618789 MS.gene94953:intron
TCCCTCCCAAGGAACACACC+AGG 0.599409 3.1:+44619818 MS.gene94953:CDS
ATTACCAGATGAAGAGGCAG+GGG 0.599737 3.1:+44620658 MS.gene94953:CDS
GATTACCAGATGAAGAGGCA+GGG 0.608775 3.1:+44620657 MS.gene94953:intron
AAAAGGAGTAACATATAGTG+AGG 0.613076 3.1:+44618452 MS.gene94953:CDS
GTAAGTAATTCAGGTGCAAG+TGG 0.616501 3.1:-44619316 None:intergenic
CTTCTGGTAAAATAATGAGA+AGG 0.618252 3.1:+44620819 MS.gene94953:CDS
ATGAAAATGGCATTGCACAA+AGG 0.621273 3.1:-44618931 None:intergenic
ACTAGGTTACTATAAACAAG+TGG 0.621740 3.1:+44620030 MS.gene94953:intron
AACAGCTGCATCTTCAACTG+AGG 0.622182 3.1:-44620371 None:intergenic
ACCTCTTGGACAAGAACACC+AGG 0.622266 3.1:-44619358 None:intergenic
GAACGGGCGAATATTGGCTA+CGG 0.624342 3.1:-44618338 None:intergenic
AAACAGGAAAATCCCTCCCA+AGG 0.628310 3.1:+44619807 MS.gene94953:CDS
GCATTTGTGGATGCTGAGAG+TGG 0.629816 3.1:+44618429 MS.gene94953:CDS
ACCAATCCAAGAATAATAGG+TGG 0.632007 3.1:-44619223 None:intergenic
TAGGAACAAAGGGAAAGTAG+TGG 0.635216 3.1:+44619126 MS.gene94953:CDS
AGGTGCAAAAGAGAGTGAAG+AGG 0.646139 3.1:+44620712 MS.gene94953:CDS
TCATTACAAGAAAGTGAGAG+TGG 0.654711 3.1:+44620766 MS.gene94953:CDS
TAATCCAGCTTCACATACGT+CGG 0.679378 3.1:+44618623 MS.gene94953:CDS
GAGCAGCATTAGAAGCAACA+TGG 0.688878 3.1:-44620745 None:intergenic
CCTCCCAAGGAACACACCAG+GGG 0.693772 3.1:+44619820 MS.gene94953:CDS
AGAAGCCAATGTGTAATGCA+AGG 0.701599 3.1:+44619854 MS.gene94953:CDS
GCTTGTCAAAGAGAAGATGG+TGG 0.703710 3.1:+44620841 MS.gene94953:CDS
AGGGTGTGATGCTTACACAC+AGG 0.727103 3.1:+44618975 MS.gene94953:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTAGATAAATGTTA+GGG + chr3.1:44619909-44619928 MS.gene94953:intron 10.0%
!!! TAATTTTTTAGATAAATGTT+AGG + chr3.1:44619908-44619927 MS.gene94953:intron 10.0%
!! TTTAATATTACATTCTCATT+GGG + chr3.1:44620433-44620452 MS.gene94953:intron 15.0%
!!! AAATTTCGTACTTATTTTTT+GGG - chr3.1:44619471-44619490 None:intergenic 15.0%
!!! AATAAGACATTTTTAATTGA+CGG + chr3.1:44620563-44620582 MS.gene94953:intron 15.0%
!!! ATTTTTTAGATAAATGTTAG+GGG + chr3.1:44619910-44619929 MS.gene94953:intron 15.0%
!!! TGAGATTAATTTTAATATAC+CGG + chr3.1:44620465-44620484 MS.gene94953:intron 15.0%
!!! TTTTAATATTACATTCTCAT+TGG + chr3.1:44620432-44620451 MS.gene94953:intron 15.0%
!! AAAAATTCTTAGACTTTGTT+AGG - chr3.1:44620889-44620908 None:intergenic 20.0%
!! AAAATTCTTAGACTTTGTTA+GGG - chr3.1:44620888-44620907 None:intergenic 20.0%
!! CTTATAAGATTTAATTCCTA+TGG - chr3.1:44620590-44620609 None:intergenic 20.0%
!!! AAACTCTTTTTGTTTTTACT+AGG + chr3.1:44620013-44620032 MS.gene94953:intron 20.0%
!!! AATTTCGTACTTATTTTTTG+GGG - chr3.1:44619470-44619489 None:intergenic 20.0%
!!! CAAATTTCGTACTTATTTTT+TGG - chr3.1:44619472-44619491 None:intergenic 20.0%
!!! CAATTAAAGACTTTTTTACA+GGG + chr3.1:44619414-44619433 MS.gene94953:intron 20.0%
!!! TCAATTAAAGACTTTTTTAC+AGG + chr3.1:44619413-44619432 MS.gene94953:intron 20.0%
!!! TTCTACAAAATTTTCTATGT+AGG - chr3.1:44618301-44618320 None:intergenic 20.0%
!!! TTTTATTGTTGATCGTATTA+AGG + chr3.1:44620132-44620151 MS.gene94953:CDS 20.0%
!!! TTTTTTAGATAAATGTTAGG+GGG + chr3.1:44619911-44619930 MS.gene94953:intron 20.0%
! AACACATACTATAAAAAAGC+AGG - chr3.1:44619634-44619653 None:intergenic 25.0%
! AATAACAAAAATTATCGTCG+CGG - chr3.1:44620410-44620429 None:intergenic 25.0%
! AATAGACCCCTAAAAAAATT+TGG - chr3.1:44619498-44619517 None:intergenic 25.0%
! ACACATACTATAAAAAAGCA+GGG - chr3.1:44619633-44619652 None:intergenic 25.0%
! ACATATGCACAAAAATTATC+TGG + chr3.1:44619719-44619738 MS.gene94953:CDS 25.0%
! AGATCAAATTGATCAACAAT+AGG - chr3.1:44619256-44619275 None:intergenic 25.0%
! ATAAACTTGACTTCCAAATT+CGG - chr3.1:44619779-44619798 None:intergenic 25.0%
! ATAGACCCCTAAAAAAATTT+GGG - chr3.1:44619497-44619516 None:intergenic 25.0%
! ATCAACATTGTATCAAATCA+AGG - chr3.1:44618773-44618792 None:intergenic 25.0%
! ATGCCATAAATGTGAAAAAA+GGG - chr3.1:44619082-44619101 None:intergenic 25.0%
! ATGGAACAAAACATTATTTG+TGG + chr3.1:44620213-44620232 MS.gene94953:intron 25.0%
! ATTTGATACAATGTTGATAC+AGG + chr3.1:44618775-44618794 MS.gene94953:intron 25.0%
! GCTATTTGTGACAATTAATT+TGG - chr3.1:44618679-44618698 None:intergenic 25.0%
! GTTACATGTTTATTGTTACA+TGG + chr3.1:44620194-44620213 MS.gene94953:intron 25.0%
! TAAAATCACACACATATGAT+TGG - chr3.1:44620526-44620545 None:intergenic 25.0%
! TGAACTAACAATACTTTAGA+AGG - chr3.1:44619396-44619415 None:intergenic 25.0%
! TTAACCAATCCAAGAATAAT+AGG - chr3.1:44619229-44619248 None:intergenic 25.0%
!! AAGGAGTTGATTAAATACAA+AGG + chr3.1:44620151-44620170 MS.gene94953:CDS 25.0%
!! ATAGATTTTCAAAGGCTTTA+AGG + chr3.1:44618490-44618509 MS.gene94953:CDS 25.0%
!! ATGATTCATCATCATTTTGA+AGG - chr3.1:44618723-44618742 None:intergenic 25.0%
!! GGATATACATAGATTTTCAA+AGG + chr3.1:44618482-44618501 MS.gene94953:CDS 25.0%
!! TGGAAGTACACATAAAAATT+CGG + chr3.1:44619739-44619758 MS.gene94953:CDS 25.0%
!!! AACTAATTTTAGCCTATACT+TGG - chr3.1:44620286-44620305 None:intergenic 25.0%
!!! AATTTTTTTAGGGGTCTATT+AGG + chr3.1:44619498-44619517 MS.gene94953:intron 25.0%
!!! ACTAATTTTAGCCTATACTT+GGG - chr3.1:44620285-44620304 None:intergenic 25.0%
!!! ATTCCCTTTTTTCACATTTA+TGG + chr3.1:44619076-44619095 MS.gene94953:CDS 25.0%
!!! ATTTGTCCCCAAATTTTTTT+AGG + chr3.1:44619487-44619506 MS.gene94953:intron 25.0%
!!! TGATAGTTTTTTTCTTTTGC+AGG + chr3.1:44619661-44619680 MS.gene94953:intron 25.0%
!!! TTTGTCCCCAAATTTTTTTA+GGG + chr3.1:44619488-44619507 MS.gene94953:intron 25.0%
AAAAGGAGTAACATATAGTG+AGG + chr3.1:44618452-44618471 MS.gene94953:CDS 30.0%
AAGTTTATTGATCCTGAAAC+AGG + chr3.1:44619791-44619810 MS.gene94953:CDS 30.0%
AATCTTTGTTCTACACTCTT+TGG + chr3.1:44619010-44619029 MS.gene94953:CDS 30.0%
ACTAGGTTACTATAAACAAG+TGG + chr3.1:44620030-44620049 MS.gene94953:intron 30.0%
AGAATAATAGGTGGAACAAT+AGG - chr3.1:44619217-44619236 None:intergenic 30.0%
AGACTATTGACAAAAATGGA+TGG + chr3.1:44620065-44620084 MS.gene94953:CDS 30.0%
AGTACACATAAAAATTCGGT+CGG + chr3.1:44619743-44619762 MS.gene94953:CDS 30.0%
ATGGCATACTGTACAATATT+TGG - chr3.1:44618558-44618577 None:intergenic 30.0%
ATTGGAAAAGTCACTACATT+AGG + chr3.1:44619049-44619068 MS.gene94953:CDS 30.0%
ATTGTTCCACCTATTATTCT+TGG + chr3.1:44619217-44619236 MS.gene94953:CDS 30.0%
CTTCTGGTAAAATAATGAGA+AGG + chr3.1:44620819-44620838 MS.gene94953:CDS 30.0%
GATGCCATAAATGTGAAAAA+AGG - chr3.1:44619083-44619102 None:intergenic 30.0%
TAGACCCCTAAAAAAATTTG+GGG - chr3.1:44619496-44619515 None:intergenic 30.0%
TCAAAGGAAGTAAGTAATTC+AGG - chr3.1:44619328-44619347 None:intergenic 30.0%
TGTAACATCAAGAACTTACT+TGG - chr3.1:44620180-44620199 None:intergenic 30.0%
TTAGTTAGGACTCAAATTGT+AGG + chr3.1:44619575-44619594 MS.gene94953:intron 30.0%
TTGGAAAAGTCACTACATTA+GGG + chr3.1:44619050-44619069 MS.gene94953:CDS 30.0%
! ATTTTACCAGAAGGTGATTT+TGG - chr3.1:44620812-44620831 None:intergenic 30.0%
! GAATATGTTGTGCTACTATT+AGG + chr3.1:44619107-44619126 MS.gene94953:CDS 30.0%
!! AAATCAAGGAGTATCGAAAA+AGG - chr3.1:44618759-44618778 None:intergenic 30.0%
!! ATTTTTAATTGACGGTCCAT+AGG + chr3.1:44620571-44620590 MS.gene94953:intron 30.0%
!! CTTCTCATTATTTTACCAGA+AGG - chr3.1:44620821-44620840 None:intergenic 30.0%
!! TAGAACAAAGATTTGCTACT+AGG - chr3.1:44619003-44619022 None:intergenic 30.0%
!!! AATGTTACATTTTCAGGTAC+CGG - chr3.1:44618363-44618382 None:intergenic 30.0%
!!! TACTTATTTTTTGGGGTCTA+GGG - chr3.1:44619463-44619482 None:intergenic 30.0%
!!! TTGTCCCCAAATTTTTTTAG+GGG + chr3.1:44619489-44619508 MS.gene94953:intron 30.0%
!!! TTTTTTCTTTTGCAGGCATA+CGG + chr3.1:44619668-44619687 MS.gene94953:intron 30.0%
AAATAGCTCAAGCCATGAAA+AGG + chr3.1:44618692-44618711 MS.gene94953:CDS 35.0%
AACATATAGTGAGGTTGTGA+GGG + chr3.1:44618461-44618480 MS.gene94953:CDS 35.0%
ACAGTATGCCATTATTGCTT+TGG + chr3.1:44618566-44618585 MS.gene94953:CDS 35.0%
ACCAATCCAAGAATAATAGG+TGG - chr3.1:44619226-44619245 None:intergenic 35.0%
ACCAGGAAACTTATGTTCAA+AGG - chr3.1:44619344-44619363 None:intergenic 35.0%
ACCTGAAAATGTAACATTGC+CGG + chr3.1:44618365-44618384 MS.gene94953:CDS 35.0%
ATGAAAATGGCATTGCACAA+AGG - chr3.1:44618934-44618953 None:intergenic 35.0%
CAGTATGCCATTATTGCTTT+GGG + chr3.1:44618567-44618586 MS.gene94953:CDS 35.0%
CATGATTCCCAAAGCAATAA+TGG - chr3.1:44618577-44618596 None:intergenic 35.0%
CTCCAAAATGCTGAACTATA+TGG + chr3.1:44618396-44618415 MS.gene94953:CDS 35.0%
GATTACCTTGCATTACACAT+TGG - chr3.1:44619862-44619881 None:intergenic 35.0%
GCTCAGACTATTGACAAAAA+TGG + chr3.1:44620061-44620080 MS.gene94953:CDS 35.0%
GGTGTAACACAAGAAATGAT+TGG + chr3.1:44619031-44619050 MS.gene94953:CDS 35.0%
TAACATATAGTGAGGTTGTG+AGG + chr3.1:44618460-44618479 MS.gene94953:CDS 35.0%
TAATATACCGGCAGTGTAAA+AGG + chr3.1:44620477-44620496 MS.gene94953:intron 35.0%
TCATTACAAGAAAGTGAGAG+TGG + chr3.1:44620766-44620785 MS.gene94953:CDS 35.0%
TCCACCTATTATTCTTGGAT+TGG + chr3.1:44619222-44619241 MS.gene94953:CDS 35.0%
TCCTTTGAACATAAGTTTCC+TGG + chr3.1:44619340-44619359 MS.gene94953:CDS 35.0%
TGATACAGGTGAAAAGTCTA+GGG + chr3.1:44618789-44618808 MS.gene94953:intron 35.0%
TGCTGAACTATATGGTGATA+AGG + chr3.1:44618404-44618423 MS.gene94953:CDS 35.0%
TGTGACTTCATGTGTAATCA+AGG - chr3.1:44619188-44619207 None:intergenic 35.0%
TTGATACAGGTGAAAAGTCT+AGG + chr3.1:44618788-44618807 MS.gene94953:intron 35.0%
TTGTTGAAGATGCTATGAAC+TGG + chr3.1:44618840-44618859 MS.gene94953:CDS 35.0%
TTTAGATAAATGTTAGGGGG+AGG + chr3.1:44619914-44619933 MS.gene94953:intron 35.0%
TTTCACATTTATGGCATCAC+TGG + chr3.1:44619085-44619104 MS.gene94953:CDS 35.0%
! ATATGATTGGTTGTGATCTG+TGG - chr3.1:44620513-44620532 None:intergenic 35.0%
! ATTTTATCGTAAGTCTCCGA+AGG - chr3.1:44619974-44619993 None:intergenic 35.0%
! CACCATATAGTTCAGCATTT+TGG - chr3.1:44618401-44618420 None:intergenic 35.0%
! GTGCTACTATTAGGAACAAA+GGG + chr3.1:44619116-44619135 MS.gene94953:CDS 35.0%
! GTGTTTTCTTTCTTGAATGC+AGG + chr3.1:44620309-44620328 MS.gene94953:intron 35.0%
! TGTGCTACTATTAGGAACAA+AGG + chr3.1:44619115-44619134 MS.gene94953:CDS 35.0%
! TTGAAGGAGTTACCTTTTCA+TGG - chr3.1:44618707-44618726 None:intergenic 35.0%
!! CAAAGGTCATTTTGGTGAAT+TGG - chr3.1:44618917-44618936 None:intergenic 35.0%
!! CATTATTGCTTTGGGAATCA+TGG + chr3.1:44618575-44618594 MS.gene94953:CDS 35.0%
!! GAAGATGGTGGAAAAGATTA+AGG + chr3.1:44620853-44620872 MS.gene94953:CDS 35.0%
!!! GTACTTATTTTTTGGGGTCT+AGG - chr3.1:44619464-44619483 None:intergenic 35.0%
AAAAATGGATGGCTTCACAC+CGG + chr3.1:44620076-44620095 MS.gene94953:CDS 40.0%
AAAATAGCCTCTAACTCTGC+AGG - chr3.1:44620340-44620359 None:intergenic 40.0%
AAAGGGAAAGTAGTGGTGAT+GGG + chr3.1:44619133-44619152 MS.gene94953:CDS 40.0%
AAGGCTTGTCAAAGAGAAGA+TGG + chr3.1:44620838-44620857 MS.gene94953:CDS 40.0%
ACTTGACTTCCAAATTCGGA+AGG - chr3.1:44619775-44619794 None:intergenic 40.0%
AGAAGCCAATGTGTAATGCA+AGG + chr3.1:44619854-44619873 MS.gene94953:CDS 40.0%
ATACCACTAGACTACACCTT+CGG + chr3.1:44619955-44619974 MS.gene94953:intron 40.0%
ATTATCGTCGCGGTTACTTA+CGG - chr3.1:44620400-44620419 None:intergenic 40.0%
GCTATACCAAAATCACCTTC+TGG + chr3.1:44620803-44620822 MS.gene94953:CDS 40.0%
GGATGAAAGTGATAACCTCT+TGG - chr3.1:44619375-44619394 None:intergenic 40.0%
GGCCACCAAAATCTCATAAA+CGG + chr3.1:44619607-44619626 MS.gene94953:intron 40.0%
GGGGAGGCGAAAATTATTAA+CGG + chr3.1:44619930-44619949 MS.gene94953:intron 40.0%
GTAAGTAATTCAGGTGCAAG+TGG - chr3.1:44619319-44619338 None:intergenic 40.0%
GTCTATGAATCCAATGTCAC+CGG - chr3.1:44620098-44620117 None:intergenic 40.0%
GTTCAGATTACCAGATGAAG+AGG + chr3.1:44620652-44620671 MS.gene94953:intron 40.0%
TAATCCAGCTTCACATACGT+CGG + chr3.1:44618623-44618642 MS.gene94953:CDS 40.0%
TAGGAACAAAGGGAAAGTAG+TGG + chr3.1:44619126-44619145 MS.gene94953:CDS 40.0%
TCAAATTGTAGGTTCGTCCT+AGG + chr3.1:44619586-44619605 MS.gene94953:intron 40.0%
TCATCTCCTAGCACAATAAC+AGG - chr3.1:44618818-44618837 None:intergenic 40.0%
TGGAACAAACTTCTTGAAGC+CGG + chr3.1:44618860-44618879 MS.gene94953:CDS 40.0%
TGGTGATAAGGTTGCATTTG+TGG + chr3.1:44618416-44618435 MS.gene94953:CDS 40.0%
TTTGTCTTCTGCCCAAGTAT+AGG + chr3.1:44620271-44620290 MS.gene94953:intron 40.0%
! AGGTCTCTTGGTTTGAGAAA+AGG + chr3.1:44618510-44618529 MS.gene94953:CDS 40.0%
! GCATTGCACAAAGGTCATTT+TGG - chr3.1:44618925-44618944 None:intergenic 40.0%
! GGTCTCTTGGTTTGAGAAAA+GGG + chr3.1:44618511-44618530 MS.gene94953:CDS 40.0%
! TCCGGCAATGTTACATTTTC+AGG - chr3.1:44618369-44618388 None:intergenic 40.0%
! TGTTGAACCTTTTACACTGC+CGG - chr3.1:44620487-44620506 None:intergenic 40.0%
!! TCAAAGGCTTTAAGGTCTCT+TGG + chr3.1:44618498-44618517 MS.gene94953:CDS 40.0%
!! TTATGAGATTTTGGTGGCCT+AGG - chr3.1:44619606-44619625 None:intergenic 40.0%
!!! GCAAGTGTTGTTTTGAGCAA+AGG + chr3.1:44620692-44620711 MS.gene94953:CDS 40.0%
!!! GCATTTTGGAGCACAAATTC+CGG - chr3.1:44618387-44618406 None:intergenic 40.0%
!!! TACATTTTCAGGTACCGGAA+CGG - chr3.1:44618358-44618377 None:intergenic 40.0%
!!! TGTGCAATGCCATTTTCATC+AGG + chr3.1:44618935-44618954 MS.gene94953:CDS 40.0%
!!! TTATTTTTTGGGGTCTAGGG+CGG - chr3.1:44619460-44619479 None:intergenic 40.0%
AAACAGGAAAATCCCTCCCA+AGG + chr3.1:44619807-44619826 MS.gene94953:CDS 45.0%
AACAGCTGCATCTTCAACTG+AGG - chr3.1:44620374-44620393 None:intergenic 45.0%
AGATTACCAGATGAAGAGGC+AGG + chr3.1:44620656-44620675 MS.gene94953:intron 45.0%
AGGCACAACAGGAATGTCAA+AGG + chr3.1:44618955-44618974 MS.gene94953:CDS 45.0%
AGGTGCAAAAGAGAGTGAAG+AGG + chr3.1:44620712-44620731 MS.gene94953:CDS 45.0%
AGTGAGAGTGGTTCACTTTG+TGG + chr3.1:44620778-44620797 MS.gene94953:CDS 45.0%
ATTACCAGATGAAGAGGCAG+GGG + chr3.1:44620658-44620677 MS.gene94953:CDS 45.0%
ATTTCCGACGTATGTGAAGC+TGG - chr3.1:44618630-44618649 None:intergenic 45.0%
CAAAGGGAAAGTAGTGGTGA+TGG + chr3.1:44619132-44619151 MS.gene94953:CDS 45.0%
CCTGTTGTGCCTGATGAAAA+TGG - chr3.1:44618947-44618966 None:intergenic 45.0%
CGGTTTCATCCTTCCGAATT+TGG + chr3.1:44619763-44619782 MS.gene94953:CDS 45.0%
CTCAAAACAACACTTGCAGC+CGG - chr3.1:44620689-44620708 None:intergenic 45.0%
GAGCAGCATTAGAAGCAACA+TGG - chr3.1:44620748-44620767 None:intergenic 45.0%
GATTACCAGATGAAGAGGCA+GGG + chr3.1:44620657-44620676 MS.gene94953:intron 45.0%
GCTTGTCAAAGAGAAGATGG+TGG + chr3.1:44620841-44620860 MS.gene94953:CDS 45.0%
GGCACAACAGGAATGTCAAA+GGG + chr3.1:44618956-44618975 MS.gene94953:CDS 45.0%
GGCAGGGAATGATTCAATGA+AGG + chr3.1:44618889-44618908 MS.gene94953:CDS 45.0%
GGGTTACCTGTTATTGTGCT+AGG + chr3.1:44618809-44618828 MS.gene94953:CDS 45.0%
TCAAAACAACACTTGCAGCC+GGG - chr3.1:44620688-44620707 None:intergenic 45.0%
TCATTGAATCATTCCCTGCC+CGG - chr3.1:44618889-44618908 None:intergenic 45.0%
! CAGGGCCGTTTATGAGATTT+TGG - chr3.1:44619615-44619634 None:intergenic 45.0%
! CCATTTTCATCAGGCACAAC+AGG + chr3.1:44618944-44618963 MS.gene94953:CDS 45.0%
! GGCCGTTTATGAGATTTTGG+TGG - chr3.1:44619612-44619631 None:intergenic 45.0%
! TTTTTACAGGGCCGTATCTG+AGG + chr3.1:44619426-44619445 MS.gene94953:intron 45.0%
!!! ACATTTTCAGGTACCGGAAC+GGG - chr3.1:44618357-44618376 None:intergenic 45.0%
!! TTTATATATATTTATTAGTT+AGG + chr3.1:44619561-44619580 MS.gene94953:intron 5.0%
AACTTCTTGAAGCCGGAGAC+CGG + chr3.1:44618867-44618886 MS.gene94953:CDS 50.0%
ACCTCTTGGACAAGAACACC+AGG - chr3.1:44619361-44619380 None:intergenic 50.0%
AGGGTGTGATGCTTACACAC+AGG + chr3.1:44618975-44618994 MS.gene94953:CDS 50.0%
ATTTCCCCTGCCTCTTCATC+TGG - chr3.1:44620665-44620684 None:intergenic 50.0%
CTTCTCACACAAAGTTCCCC+TGG - chr3.1:44619839-44619858 None:intergenic 50.0%
GCATTTGTGGATGCTGAGAG+TGG + chr3.1:44618429-44618448 MS.gene94953:CDS 50.0%
GTGGATGCTGAGAGTGGAAA+AGG + chr3.1:44618435-44618454 MS.gene94953:CDS 50.0%
TAGCCAATATTCGCCCGTTC+CGG + chr3.1:44618341-44618360 MS.gene94953:CDS 50.0%
TCCTGGTGTTCTTGTCCAAG+AGG + chr3.1:44619357-44619376 MS.gene94953:CDS 50.0%
! GAACGGGCGAATATTGGCTA+CGG - chr3.1:44618341-44618360 None:intergenic 50.0%
! GATGCTGGTTGTGTGTTCTC+AGG + chr3.1:44618597-44618616 MS.gene94953:CDS 50.0%
! GGGAGGGATTTTCCTGTTTC+AGG - chr3.1:44619806-44619825 None:intergenic 50.0%
! TCTCCGAAGGTGTAGTCTAG+TGG - chr3.1:44619961-44619980 None:intergenic 50.0%
!! GCTTTGGGAATCATGGATGC+TGG + chr3.1:44618582-44618601 MS.gene94953:CDS 50.0%
ACTTCTTGAAGCCGGAGACC+GGG + chr3.1:44618868-44618887 MS.gene94953:CDS 55.0%
AGTTCCCCTGGTGTGTTCCT+TGG - chr3.1:44619827-44619846 None:intergenic 55.0%
GGTTGCTCCTGCAGAGTTAG+AGG + chr3.1:44620330-44620349 MS.gene94953:intron 55.0%
GTACCGGAACGGGCGAATAT+TGG - chr3.1:44618347-44618366 None:intergenic 55.0%
GTTCCCCTGGTGTGTTCCTT+GGG - chr3.1:44619826-44619845 None:intergenic 55.0%
TGAAGAGGCAGGGGAAATCC+CGG + chr3.1:44620667-44620686 MS.gene94953:CDS 55.0%
TGGCTTCACACCGGTGACAT+TGG + chr3.1:44620085-44620104 MS.gene94953:CDS 55.0%
ATCATTCCCTGCCCGGTCTC+CGG - chr3.1:44618882-44618901 None:intergenic 60.0%
CCCTCCCAAGGAACACACCA+GGG + chr3.1:44619819-44619838 MS.gene94953:CDS 60.0%
CCCTGGTGTGTTCCTTGGGA+GGG - chr3.1:44619822-44619841 None:intergenic 60.0%
CCTCCCAAGGAACACACCAG+GGG + chr3.1:44619820-44619839 MS.gene94953:CDS 60.0%
TCCCTCCCAAGGAACACACC+AGG + chr3.1:44619818-44619837 MS.gene94953:CDS 60.0%
! ACAGGGCCGTATCTGAGGCA+GGG + chr3.1:44619431-44619450 MS.gene94953:intron 60.0%
! TACAGGGCCGTATCTGAGGC+AGG + chr3.1:44619430-44619449 MS.gene94953:intron 60.0%
CCCCTGGTGTGTTCCTTGGG+AGG - chr3.1:44619823-44619842 None:intergenic 65.0%
CGGTCGCCCTGCCTCAGATA+CGG - chr3.1:44619440-44619459 None:intergenic 65.0%
TTGAAGCCGGAGACCGGGCA+GGG + chr3.1:44618873-44618892 MS.gene94953:CDS 65.0%
CTTGAAGCCGGAGACCGGGC+AGG + chr3.1:44618872-44618891 MS.gene94953:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 44618291 44620910 44618291 ID=MS.gene94953
chr3.1 mRNA 44618291 44620910 44618291 ID=MS.gene94953.t1;Parent=MS.gene94953
chr3.1 exon 44618291 44618713 44618291 ID=MS.gene94953.t1.exon1;Parent=MS.gene94953.t1
chr3.1 CDS 44618291 44618713 44618291 ID=cds.MS.gene94953.t1;Parent=MS.gene94953.t1
chr3.1 exon 44618797 44619378 44618797 ID=MS.gene94953.t1.exon2;Parent=MS.gene94953.t1
chr3.1 CDS 44618797 44619378 44618797 ID=cds.MS.gene94953.t1;Parent=MS.gene94953.t1
chr3.1 exon 44619683 44619875 44619683 ID=MS.gene94953.t1.exon3;Parent=MS.gene94953.t1
chr3.1 CDS 44619683 44619875 44619683 ID=cds.MS.gene94953.t1;Parent=MS.gene94953.t1
chr3.1 exon 44620035 44620180 44620035 ID=MS.gene94953.t1.exon4;Parent=MS.gene94953.t1
chr3.1 CDS 44620035 44620180 44620035 ID=cds.MS.gene94953.t1;Parent=MS.gene94953.t1
chr3.1 exon 44620331 44620398 44620331 ID=MS.gene94953.t1.exon5;Parent=MS.gene94953.t1
chr3.1 CDS 44620331 44620398 44620331 ID=cds.MS.gene94953.t1;Parent=MS.gene94953.t1
chr3.1 exon 44620658 44620910 44620658 ID=MS.gene94953.t1.exon6;Parent=MS.gene94953.t1
chr3.1 CDS 44620658 44620910 44620658 ID=cds.MS.gene94953.t1;Parent=MS.gene94953.t1
Gene Sequence

>MS.gene94953

ATGGGAGCCTACATAGAAAATTTTGTAGAAGAGAATGAACACATTTTCCGTAGCCAATATTCGCCCGTTCCGGTACCTGAAAATGTAACATTGCCGGAATTTGTGCTCCAAAATGCTGAACTATATGGTGATAAGGTTGCATTTGTGGATGCTGAGAGTGGAAAAGGAGTAACATATAGTGAGGTTGTGAGGGATATACATAGATTTTCAAAGGCTTTAAGGTCTCTTGGTTTGAGAAAAGGGAATGTTGTGATTGTTGTACTTCCAAATATTGTACAGTATGCCATTATTGCTTTGGGAATCATGGATGCTGGTTGTGTGTTCTCAGGAGCTAATCCAGCTTCACATACGTCGGAAATTAAGAAACAAGTTGAGTCTGCTGATGCCAAATTAATTGTCACAAATAGCTCAAGCCATGAAAAGGTAACTCCTTCAAAATGATGATGAATCATGTTTTTTCTTATGCCTTTTTCGATACTCCTTGATTTGATACAATGTTGATACAGGTGAAAAGTCTAGGGTTACCTGTTATTGTGCTAGGAGATGAACTTGTTGAAGATGCTATGAACTGGAACAAACTTCTTGAAGCCGGAGACCGGGCAGGGAATGATTCAATGAAGGAACCAATTCACCAAAATGACCTTTGTGCAATGCCATTTTCATCAGGCACAACAGGAATGTCAAAGGGTGTGATGCTTACACACAGGAACCTAGTAGCAAATCTTTGTTCTACACTCTTTGGTGTAACACAAGAAATGATTGGAAAAGTCACTACATTAGGGTTAATTCCCTTTTTTCACATTTATGGCATCACTGGAATATGTTGTGCTACTATTAGGAACAAAGGGAAAGTAGTGGTGATGGGAAAATATGATTTGAAAACATTTTTGAATGCCTTGATTACACATGAAGTCACATTTGCACCTATTGTTCCACCTATTATTCTTGGATTGGTTAAAAATCCTATTGTTGATCAATTTGATCTTAGCAAGCTTAAACTTCAAGCTATTATGACTGCTGCAGCACCACTTGCACCTGAATTACTTACTTCCTTTGAACATAAGTTTCCTGGTGTTCTTGTCCAAGAGGTTATCACTTTCATCCTTCTAAAGTATTGTTAGTTCAATTAAAGACTTTTTTACAGGGCCGTATCTGAGGCAGGGCGACCGCCCTAGACCCCAAAAAATAAGTACGAAATTTGTCCCCAAATTTTTTTAGGGGTCTATTAGGCTCTAAAATAATTGCTTAGTTTTTTGTATCAAGTTTGATGTTTATATATATTTATTAGTTAGGACTCAAATTGTAGGTTCGTCCTAGGCCACCAAAATCTCATAAACGGCCCTGCTTTTTTATAGTATGTGTTTCTAAAGTGATAGTTTTTTTCTTTTGCAGGCATACGGACTAACTGAGCATAGCTGCATTACACTTACATATGCACAAAAATTATCTGGAAGTACACATAAAAATTCGGTCGGTTTCATCCTTCCGAATTTGGAAGTCAAGTTTATTGATCCTGAAACAGGAAAATCCCTCCCAAGGAACACACCAGGGGAACTTTGTGTGAGAAGCCAATGTGTAATGCAAGGTAATCTATGAGTAAAATTATTTATGAAAATATAATTTTTTAGATAAATGTTAGGGGGAGGCGAAAATTATTAACGGCAATACCACTAGACTACACCTTCGGAGACTTACGATAAAATTATATGATAAATGTACTATAAACTCTTTTTGTTTTTACTAGGTTACTATAAACAAGTGGATGAGACTGCTCAGACTATTGACAAAAATGGATGGCTTCACACCGGTGACATTGGATTCATAGACGATGAAGAAAATGTTTTTATTGTTGATCGTATTAAGGAGTTGATTAAATACAAAGGCTTCCAAGTAAGTTCTTGATGTTACATGTTTATTGTTACATGGAACAAAACATTATTTGTGGAACATAATTTTAAGTTCTTAGCTAGTAAGTTCTGTTTTGTCTTCTGCCCAAGTATAGGCTAAAATTAGTTTATGTGTTTTCTTTCTTGAATGCAGGTTGCTCCTGCAGAGTTAGAGGCTATTTTGCTCTCTCATTCCTCAGTTGAAGATGCAGCTGTTGTACCGTAAGTAACCGCGACGATAATTTTTGTTATTCTTTTTAATATTACATTCTCATTGGGATTTAAGATTGAGATTAATTTTAATATACCGGCAGTGTAAAAGGTTCAACATATCCACAGATCACAACCAATCATATGTGTGTGATTTTAGCAATAGTTACGATTAAAATAAGACATTTTTAATTGACGGTCCATAGGAATTAAATCTTATAAGATTTCAATTATTTACAATCTTATGTTCTTTTGTGCAATGATTGTTCAGATTACCAGATGAAGAGGCAGGGGAAATCCCGGCTGCAAGTGTTGTTTTGAGCAAAGGTGCAAAAGAGAGTGAAGAGGATATTATGAACCATGTTGCTTCTAATGCTGCTCATTACAAGAAAGTGAGAGTGGTTCACTTTGTGGAAGCTATACCAAAATCACCTTCTGGTAAAATAATGAGAAGGCTTGTCAAAGAGAAGATGGTGGAAAAGATTAAGGAAAATAATTCCCTAACAAAGTCTAAGAATTTTTAA
Protein sequence

>MS.gene94953.t1

MGAYIENFVEENEHIFRSQYSPVPVPENVTLPEFVLQNAELYGDKVAFVDAESGKGVTYSEVVRDIHRFSKALRSLGLRKGNVVIVVLPNIVQYAIIALGIMDAGCVFSGANPASHTSEIKKQVESADAKLIVTNSSSHEKVKSLGLPVIVLGDELVEDAMNWNKLLEAGDRAGNDSMKEPIHQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFGVTQEMIGKVTTLGLIPFFHIYGITGICCATIRNKGKVVVMGKYDLKTFLNALITHEVTFAPIVPPIILGLVKNPIVDQFDLSKLKLQAIMTAAAPLAPELLTSFEHKFPGVLVQEAYGLTEHSCITLTYAQKLSGSTHKNSVGFILPNLEVKFIDPETGKSLPRNTPGELCVRSQCVMQGYYKQVDETAQTIDKNGWLHTGDIGFIDDEENVFIVDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEEAGEIPAASVVLSKGAKESEEDIMNHVASNAAHYKKVRVVHFVEAIPKSPSGKIMRRLVKEKMVEKIKENNSLTKSKNF