AlfalfaGEDB | MS.gene04193

M. sativa cultivar XinJiangDaYe / MS.gene04193

KEGG: K01904
GO: GO:0003674 GO:0003824
PFAM: PF00501.31 PF13193.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04193.t1	XP_013460056.1	97.5	554	13	1	1	554	1	553	1.60E-306	1061.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04193.t1	Q9LQ12	72.9	532	141	2	10	539	7	537	7.8e-225	781.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04193.t1	A0A072UWU0	97.5	554	13	1	1	554	1	553	1.2e-306	1061.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene006564	MS.gene04193	PPI
MS.gene022444	MS.gene04193	PPI
MS.gene028032	MS.gene04193	PPI
MS.gene028035	MS.gene04193	PPI
MS.gene031746	MS.gene04193	PPI
MS.gene035805	MS.gene04193	PPI
MS.gene04193	MS.gene73119	PPI
MS.gene04193	MS.gene66371	PPI
MS.gene04193	MS.gene016573	PPI
MS.gene04193	MS.gene030325	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04193.t1	MTR_3g460770	97.473	554	13	1	1	554	1	553	0.0	1105
MS.gene04193.t1	MTR_2g105570	39.154	544	311	9	10	538	7	545	2.29e-137	410
MS.gene04193.t1	MTR_4g005750	39.552	536	312	7	11	538	7	538	6.13e-130	390
MS.gene04193.t1	MTR_5g007640	37.893	541	315	8	11	538	51	583	9.46e-127	384
MS.gene04193.t1	MTR_4g128337	38.519	540	318	6	10	540	12	546	1.73e-121	369
MS.gene04193.t1	MTR_4g057730	35.424	542	332	8	13	545	9	541	2.16e-120	366
MS.gene04193.t1	MTR_2g095510	36.245	538	330	7	12	542	8	539	8.86e-117	356
MS.gene04193.t1	MTR_1g026310	34.608	549	317	9	8	532	20	550	7.07e-114	350
MS.gene04193.t1	MTR_1g090737	38.048	502	299	5	36	532	62	556	3.61e-113	348
MS.gene04193.t1	MTR_1g063120	34.926	544	320	10	23	542	22	555	2.54e-105	327

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04193.t1	AT1G62940	72.932	532	141	2	10	539	7	537	0.0	790
MS.gene04193.t1	AT3G21240	38.060	536	319	6	12	538	19	550	7.81e-130	390
MS.gene04193.t1	AT1G65060	38.534	532	316	6	14	538	33	560	1.38e-126	382
MS.gene04193.t1	AT4G05160	36.531	542	326	8	13	542	9	544	3.83e-123	373
MS.gene04193.t1	AT1G20480	38.095	546	315	7	11	542	29	565	4.52e-123	374
MS.gene04193.t1	AT1G20510	35.755	523	325	7	16	532	17	534	4.08e-122	370
MS.gene04193.t1	AT3G21230	37.071	553	323	8	6	538	17	564	3.97e-118	361
MS.gene04193.t1	AT1G51680	37.291	539	318	8	15	538	24	557	3.77e-116	355
MS.gene04193.t1	AT3G21240	37.821	468	278	6	12	470	19	482	7.07e-108	332
MS.gene04193.t1	AT3G21240	37.821	468	278	6	12	470	19	482	7.07e-108	332

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Find 109 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGTAACTTATAGTG+AGG	0.610280	3.3:+48364171	MS.gene04193:CDS
AAAATAGCCTCTAACTCTGC+AGG	0.509463	3.3:-48366238	None:intergenic
AAACAGGAAGATCCCTCCCA+AGG	0.648638	3.3:+48365593	MS.gene04193:CDS
AAAGGGAAAGTAGTGGTGAT+GGG	0.563703	3.3:+48364852	MS.gene04193:CDS
AAATAGCTCAAGCCATGAAA+AGG	0.506415	3.3:+48364411	MS.gene04193:CDS
AACAGCTGCATCTTCAACTG+AGG	0.622182	3.3:-48366272	None:intergenic
AACTTATAGTGAGGTTGTGA+GGG	0.541554	3.3:+48364180	MS.gene04193:CDS
AACTTCTTGAAGCCGGAGAT+CGG	0.453268	3.3:+48364586	MS.gene04193:CDS
AAGGAGTTGATTAAATACAA+AGG	0.576483	3.3:+48365944	MS.gene04193:CDS
AAGGCTTGTCAAAGAGAAGA+TGG	0.550369	3.3:+48366745	MS.gene04193:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGAGTAACTTATAGTG+AGG	+	chr3.3:48364171-48364190	MS.gene04193:CDS	30.0%
AAGTTTATTGATCCTGAAAC+AGG	+	chr3.3:48365577-48365596	MS.gene04193:CDS	30.0%
AATCTTTGTTCTACACTCTT+TGG	+	chr3.3:48364729-48364748	MS.gene04193:CDS	30.0%
AGAATAATAGGTGGAACAAT+AGG	-	chr3.3:48364936-48364955	None:intergenic	30.0%
AGACTATTGACAAAAATGGA+TGG	+	chr3.3:48365858-48365877	MS.gene04193:CDS	30.0%
AGTACACATAAAAATTCGGT+CGG	+	chr3.3:48365529-48365548	MS.gene04193:CDS	30.0%
ATAACAAAAATGATTGTCGC+GGG	-	chr3.3:48366316-48366335	None:intergenic	30.0%
ATATGATTGATTGTGATCTG+TGG	-	chr3.3:48366421-48366440	None:intergenic	30.0%
ATCTTAAATCCACAATGAAG+AGG	-	chr3.3:48366353-48366372	None:intergenic	30.0%
ATGGCATACTCTACAATATT+TGG	-	chr3.3:48364277-48364296	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	48364010	48366817	48364010	ID=MS.gene04193
chr3.3	mRNA	48364010	48366817	48364010	ID=MS.gene04193.t1;Parent=MS.gene04193
chr3.3	exon	48364010	48364432	48364010	ID=MS.gene04193.t1.exon1;Parent=MS.gene04193.t1
chr3.3	CDS	48364010	48364432	48364010	ID=cds.MS.gene04193.t1;Parent=MS.gene04193.t1
chr3.3	exon	48364516	48365097	48364516	ID=MS.gene04193.t1.exon2;Parent=MS.gene04193.t1
chr3.3	CDS	48364516	48365097	48364516	ID=cds.MS.gene04193.t1;Parent=MS.gene04193.t1
chr3.3	exon	48365469	48365661	48365469	ID=MS.gene04193.t1.exon3;Parent=MS.gene04193.t1
chr3.3	CDS	48365469	48365661	48365469	ID=cds.MS.gene04193.t1;Parent=MS.gene04193.t1
chr3.3	exon	48365828	48365973	48365828	ID=MS.gene04193.t1.exon4;Parent=MS.gene04193.t1
chr3.3	CDS	48365828	48365973	48365828	ID=cds.MS.gene04193.t1;Parent=MS.gene04193.t1
chr3.3	exon	48366232	48366299	48366232	ID=MS.gene04193.t1.exon5;Parent=MS.gene04193.t1
chr3.3	CDS	48366232	48366299	48366232	ID=cds.MS.gene04193.t1;Parent=MS.gene04193.t1
chr3.3	exon	48366565	48366817	48366565	ID=MS.gene04193.t1.exon6;Parent=MS.gene04193.t1
chr3.3	CDS	48366565	48366817	48366565	ID=cds.MS.gene04193.t1;Parent=MS.gene04193.t1

Gene Sequence

>MS.gene04193

ATGGGAGCCTACATAGAAAATTTTGTAGAAGAGAATGAACACATTTTCCGTAGCCAATATTCGCCCATTCCGGTACCTGAAAATGTAACATTGCCGGAATTTGTGCTCCAAAATGCTGAACTATATGGTGATAAGGTTGCATTTGTGGATGCTGAGAGTGGAAAAGGAGTAACTTATAGTGAGGTTGTGAGGGATATACATAGATTTTCAAAGGCTTTAAGGTCTCTTGGTTTGAGAAAAGGGAATGTTGTGATTGTTGTACTTCCAAATATTGTAGAGTATGCCATTATTGCTTTGGGAATCATGGATGCTGGTTGTGTGTTCTCAGGAGCTAATCCAGCTTCACATACGTCGGAAATTAAGAAACAAGTTGAGTCTGCTGATGCCAAATTAATTGTCACAAATAGCTCAAGCCATGAAAAGGTAACTCCTTCAAAATGATGATGAATCATGTTTTTTCTTATGCCTTTTTCGATACTCCTTGATTTGATACAATGTTGATACAGGTGAAAAGTCTAGGGTTACCTGTTATTGTGCTAGGAGATGAACTTGTTGAAGATGCTATGAACTGGAACAAACTTCTTGAAGCCGGAGATCGGGCAGGGAATGATTCAATGAAGGAACCAATTCACCAAAATGACCTTTGTGCCATGCCATTTTCATCAGGCACAACAGGAATGTCAAAGGGTGTGATGCTTACACACAGGAACCTAGTAGCAAATCTTTGTTCTACACTCTTTGGTGTAACACAAGAAATGATTGGAAAAGTCACTACATTAGGGTTAATTCCCTTTTTTCACATTTATGGCATCACTGGAATATGTTGTGCAACTATTAGGAACAAAGGGAAAGTAGTGGTGATGGGAAAATATGATTTGAAAACATTTTTGAATGCCTTGATTACACATGAAGTCACATTTGCACCTATTGTTCCACCTATTATTCTTGGATTGGTTAAAAATCCTATTGTTGATCAATTTGATCTTAGTAAGCTTAAACTTCAAGCCATTATGACTGCTGCTGCACCACTTGCACCTGAATTACTTACTTCCTTTGAACATAAGTTTCCTGGTGTTCTTGTTCAAGAGGTTATCACTTTCATCCTTCTATAGTATTGTTAGTTCAATTAAAGACTTTTTTAGATTTTTTTTACAGTATGTGTTTCTGGAGGGGTAACCTTGGCGCAACTGGTAAAGTTGTTGTCATGTGACTGAAAGGAAACGGGTTCAAGTATTGGAAACAGCCTTCCCGAACCCTGCGTTAGATTTTTTTTACATTATGTGTTTCTGGAGGGGTAACCTTGGCGCAACTGGAAAAGTTGTTGTCATGTGACTGAAAGGAAACGGGTTCAAGTATTGGAAACAGCCTTCCCGAACCCTGCGTATGCGGGAGCTTTAGTGCACCAGATTTCCCTTTGCCCTTTTATGTGTTTCTTAAGTGCTAATTTTTTCTTTTGCAGGCATATGGACTAACTGAGCATAGCTGCATCACACTTACATATGCACAAAAATTATCTGGAAGTACACATAAAAATTCGGTCGGTTTCATCCTTCCGAATTTGGAAGTCAAGTTTATTGATCCTGAAACAGGAAGATCCCTCCCAAGGAACACACCAGGGGAACTTTGTGTGAGAAGCCAATGTGTAATGCAAGGTAATCTATGACTATGAGTAAAATTATTTATGATAATATATTTTTTTAGACAAATGTTAGTGGTTAATTGTTAGGGGAAGGCGAAAATTATTAACGGCAATACCACTGGACTACACCTTCGGAGACTTATGATAAATGTACTATAAACTCTTTTTGTTTCTACTAGGTTATTATAAACAAGTGGATGAGACTGCTCAGACTATTGACAAAAATGGATGGCTTCACACTGGTGACATAGGATTCATAGATGATGAAGAAAATGTTTTTATTGTTGATCGTATTAAGGAGTTGATTAAATACAAAGGCTTCCAAGTAAGTTATTGATGTTACATGTTTAATGTTACATGGAACAAAACATTATTTGTGGAACATAATTGCAATGTCTTAGCTAGCAAGTTCTGTTTTATCAAATTTGGACAACATTTAACGTTCATGCATTACCAATTTATCAAATAAAGGTTAACTTGGTCAAAATTAATTTCCCAGATTAATATGCATCTATAAGTCTAAGGAACCTTCTGCCCAAGTATAGGCTAAAATTAGTTTATGTTTTTTCTTTTTTGAATGCAGGTTGCTCCTGCAGAGTTAGAGGCTATTTTGCTGTCTCATTCCTCAGTTGAAGATGCAGCTGTTGTACCGTAAGTAACCGCGCCCGCGACAATCATTTTTGTTATTCTTTTTAATGTTACCTCTTCATTGTGGATTTAAGATCGAGTTTAATTTAAATATACCGCCGGTGTAAAAGGATCAACATATCCACAGATCACAATCAATCATATGTGTGATTTTAGAAATAGTTACTCTTAAAGTCAAACATTTTTAATCGACGGTCTATACGAATTAAATCTTATAAGATTTCAACTATTTACAATGTTATGTTGTTTTGTGCAATGATTATTACAGATTACCAGATGAAGAGGCAGGGGAAATCCCAGCTGCAAGTGTTGTTTTGAGCAAAGGTGCAAAAGAGAGTGAAGAAGATATTATGAACTACGTTGCTTCCAATGCTGCTCATTACAAGAAAGTGAGAGTGGTTCACTTTGTGGAAGCTATACCAAAATCACCTTCTGGTAAAATAATGAGAAGGCTTGTCAAAGAGAAGATGGTGGAAAAGATTAAGGAAAATAATTCCCTAACAAAATCTAACAATTTTTAA

Protein sequence

>MS.gene04193.t1

MGAYIENFVEENEHIFRSQYSPIPVPENVTLPEFVLQNAELYGDKVAFVDAESGKGVTYSEVVRDIHRFSKALRSLGLRKGNVVIVVLPNIVEYAIIALGIMDAGCVFSGANPASHTSEIKKQVESADAKLIVTNSSSHEKVKSLGLPVIVLGDELVEDAMNWNKLLEAGDRAGNDSMKEPIHQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFGVTQEMIGKVTTLGLIPFFHIYGITGICCATIRNKGKVVVMGKYDLKTFLNALITHEVTFAPIVPPIILGLVKNPIVDQFDLSKLKLQAIMTAAAPLAPELLTSFEHKFPGVLVQEAYGLTEHSCITLTYAQKLSGSTHKNSVGFILPNLEVKFIDPETGRSLPRNTPGELCVRSQCVMQGYYKQVDETAQTIDKNGWLHTGDIGFIDDEENVFIVDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEEAGEIPAASVVLSKGAKESEEDIMNYVASNAAHYKKVRVVHFVEAIPKSPSGKIMRRLVKEKMVEKIKENNSLTKSNNF