AlfalfaGEDB | MS.gene05651

M. sativa cultivar XinJiangDaYe / MS.gene05651

KEGG: K01904
GO: GO:0003674 GO:0003824
PFAM: PF00501.31 PF13193.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05651.t1	XP_013460056.1	97.3	554	14	1	1	554	1	553	1.80E-305	1057.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05651.t1	Q9LQ12	72.9	532	141	2	10	539	7	537	1.3e-224	780.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05651.t1	A0A072UWU0	97.3	554	14	1	1	554	1	553	1.3e-305	1057.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene006564	MS.gene05651	PPI
MS.gene022444	MS.gene05651	PPI
MS.gene028032	MS.gene05651	PPI
MS.gene028035	MS.gene05651	PPI
MS.gene031746	MS.gene05651	PPI
MS.gene035805	MS.gene05651	PPI
MS.gene05651	MS.gene61755	PPI
MS.gene05651	MS.gene73119	PPI
MS.gene05651	MS.gene24088	PPI
MS.gene05651	MS.gene66371	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05651.t1	MTR_3g460770	97.292	554	14	1	1	554	1	553	0.0	1102
MS.gene05651.t1	MTR_2g105570	38.971	544	312	9	10	538	7	545	3.49e-137	409
MS.gene05651.t1	MTR_4g005750	39.366	536	313	7	11	538	7	538	9.55e-130	390
MS.gene05651.t1	MTR_5g007640	37.708	541	316	8	11	538	51	583	9.06e-127	384
MS.gene05651.t1	MTR_4g128337	38.333	540	319	6	10	540	12	546	4.92e-121	368
MS.gene05651.t1	MTR_4g057730	35.424	542	332	8	13	545	9	541	3.08e-120	365
MS.gene05651.t1	MTR_2g095510	36.245	538	330	7	12	542	8	539	1.73e-116	355
MS.gene05651.t1	MTR_1g026310	34.608	549	317	9	8	532	20	550	1.25e-113	349
MS.gene05651.t1	MTR_1g090737	38.048	502	299	5	36	532	62	556	4.77e-113	348
MS.gene05651.t1	MTR_1g063120	35.110	544	319	10	23	542	22	555	1.20e-105	328

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05651.t1	AT1G62940	72.932	532	141	2	10	539	7	537	0.0	790
MS.gene05651.t1	AT3G21240	37.687	536	321	6	12	538	19	550	5.00e-129	389
MS.gene05651.t1	AT1G65060	38.534	532	316	6	14	538	33	560	9.06e-127	383
MS.gene05651.t1	AT4G05160	36.347	542	327	8	13	542	9	544	9.56e-123	372
MS.gene05651.t1	AT1G20480	37.912	546	316	7	11	542	29	565	1.09e-122	372
MS.gene05651.t1	AT1G20510	35.564	523	326	7	16	532	17	534	1.01e-121	369
MS.gene05651.t1	AT3G21230	36.890	553	324	8	6	538	17	564	9.39e-118	360
MS.gene05651.t1	AT1G51680	37.106	539	319	8	15	538	24	557	1.45e-115	354
MS.gene05651.t1	AT3G21240	37.393	468	280	6	12	470	19	482	4.54e-107	330
MS.gene05651.t1	AT3G21240	37.393	468	280	6	12	470	19	482	4.54e-107	330

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Find 114 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGTAACTTATAGTG+AGG	0.610280	3.2:+51281100	MS.gene05651:CDS
AAAATAGCCTCTAACTCTGC+AGG	0.509463	3.2:-51283068	None:intergenic
AAAATTCTTAGACTTTGTTA+GGG	0.471032	3.2:-51283614	None:intergenic
AAACAGGAAGATCCCTCCCA+AGG	0.651121	3.2:+51282448	MS.gene05651:CDS
AAAGGGAAAGTAGTGGTGAT+GGG	0.563703	3.2:+51281784	MS.gene05651:CDS
AAATAGCTCAAGCCATGAAA+AGG	0.506415	3.2:+51281340	MS.gene05651:CDS
AACAGCTGCATCTTCAACTG+AGG	0.622182	3.2:-51283102	None:intergenic
AACTTATAGTGAGGTTGTGA+GGG	0.541554	3.2:+51281109	MS.gene05651:CDS
AACTTCTTGAAGCCGGAGAC+CGG	0.442959	3.2:+51281518	MS.gene05651:CDS
AAGGAGTTGATTAAATACAA+AGG	0.576483	3.2:+51282807	MS.gene05651:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGAGTAACTTATAGTG+AGG	+	chr3.2:51281100-51281119	MS.gene05651:CDS	30.0%
AATGACAAAAATTATCGTCG+CGG	-	chr3.2:51283141-51283160	None:intergenic	30.0%
AGAATAATAGGTGGAACAAT+AGG	-	chr3.2:51281868-51281887	None:intergenic	30.0%
AGACTATTGACAAAAATGGA+TGG	+	chr3.2:51282721-51282740	MS.gene05651:CDS	30.0%
AGTACACATAAAAATTCGGT+TGG	+	chr3.2:51282384-51282403	MS.gene05651:CDS	30.0%
ATGGCATACTCTACAATATT+TGG	-	chr3.2:51281206-51281225	None:intergenic	30.0%
ATTATTAACGGCAATACTAC+TGG	+	chr3.2:51282598-51282617	MS.gene05651:intron	30.0%
ATTGGAAAAGTCACTACATT+AGG	+	chr3.2:51281700-51281719	MS.gene05651:CDS	30.0%
ATTGTTCCACCTATTATTCT+TGG	+	chr3.2:51281868-51281887	MS.gene05651:CDS	30.0%
ATTTGTGGAACATAATTGCA+AGG	+	chr3.2:51282884-51282903	MS.gene05651:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	51280939	51283639	51280939	ID=MS.gene05651
chr3.2	mRNA	51280939	51283639	51280939	ID=MS.gene05651.t1;Parent=MS.gene05651
chr3.2	exon	51280939	51281361	51280939	ID=MS.gene05651.t1.exon1;Parent=MS.gene05651.t1
chr3.2	CDS	51280939	51281361	51280939	ID=cds.MS.gene05651.t1;Parent=MS.gene05651.t1
chr3.2	exon	51281448	51282029	51281448	ID=MS.gene05651.t1.exon2;Parent=MS.gene05651.t1
chr3.2	CDS	51281448	51282029	51281448	ID=cds.MS.gene05651.t1;Parent=MS.gene05651.t1
chr3.2	exon	51282324	51282516	51282324	ID=MS.gene05651.t1.exon3;Parent=MS.gene05651.t1
chr3.2	CDS	51282324	51282516	51282324	ID=cds.MS.gene05651.t1;Parent=MS.gene05651.t1
chr3.2	exon	51282691	51282836	51282691	ID=MS.gene05651.t1.exon4;Parent=MS.gene05651.t1
chr3.2	CDS	51282691	51282836	51282691	ID=cds.MS.gene05651.t1;Parent=MS.gene05651.t1
chr3.2	exon	51283062	51283129	51283062	ID=MS.gene05651.t1.exon5;Parent=MS.gene05651.t1
chr3.2	CDS	51283062	51283129	51283062	ID=cds.MS.gene05651.t1;Parent=MS.gene05651.t1
chr3.2	exon	51283387	51283639	51283387	ID=MS.gene05651.t1.exon6;Parent=MS.gene05651.t1
chr3.2	CDS	51283387	51283639	51283387	ID=cds.MS.gene05651.t1;Parent=MS.gene05651.t1

Gene Sequence

>MS.gene05651

ATGGGAGCCTACATAGAAAATTTTGTAGAAGAGAATGAACATATTTTTCGTAGCCAATATTCGCCCGTTCCGGTACCTGAAAATGTAACATTGCCGGAATTTGTGCTCCAAAATGCTGAACTATATGGTGATAAGGTTGCATTTGTGGATGCTGAGAGTGGAAAAGGAGTAACTTATAGTGAGGTTGTGAGGGATATACATAGATTTTCAAAGGCTTTAAGGTCTCTTGGTTTGAGAAAAGGGAATGTTGTGATTGTTGTACTTCCAAATATTGTAGAGTATGCCATTATTGCTTTGGGAATCATGGATGCTGGTTGTGTGTTCTCAGGAGCTAATCCAGCTTCACATACGTCGGAAATTAAGAAACAAGTTGAGTCTGCTGATGCCAAATTAATTGTCACAAATAGCTCAAGCCATGAAAAGGTAACTCCTTCAAAAATGATGATGAATCATGTTTTTTCTTATATGCCTTTTTATATACTCTTTGATTTGATACAGTGTTGATACAGGTGAAAAGTCTAGGGCTACCTTTGATAGTCCTAGGAGATGAACTTGTTGAAGATGCTATGAACTGGAACAAACTTCTTGAAGCCGGAGACCGGGCAGGGAATGATTCAATGAAGGAACCAATTCACCAAAATGACCTTTGTGCCATGCCATTTTCATCAGGCACAACAGGAATGTCAAAGGGTGTGATGCTTACACACAGAAACCTAGTAGCAAATCTTTGTTCCACACTCTTTGGTGTAACACAAGAAATGATTGGAAAAGTCACTACATTAGGGTTAATTCCATTTTTTCACATTTATGGCATCACTGGAATATGTTGTGCAACTATTAGGAACAAAGGGAAAGTAGTGGTGATGGGAAAATATGATTTGAAAACATTTTTGAATGCCTTGATTACACATGAAGTCACATTTGCACCTATTGTTCCACCTATTATTCTTGGATTGGTTAAAAATCCTATAGTTGATCAATTTGATCTTAGCAAGCTTAAACTCCAAGCCATTATGACTGCTGCAGCACCACTTGCACCTGAATTACTCACTTCCTTTGAACATAAGTTTCCTGGTGTTCTTGTCCAAGAGGTTATCACTTTCATCCTTCAAAACTATTGTTAGTTCAATTAAAGACTTTTTAGGGTTTGTGGAAATATTTTCTTAAACTATTAGATAGTTAAAGACTTTTTTAGATATTTTTTATAGTATGTGTTTCTGGAGGGGTAACCTTGGCGCAAAGTTGTTGTCATGTGATTGAAAAAGGTCACGGGTTCAAGTCTTGGAAACAACCTTCACGGACCCTGCGCATGCGGGAGCTTTAGTGCACGGGATTGCCCTTTGCCCTTTTATGTGTTTCTAAAGTGCTAGTTTTTTCTTTTGCAGGCATATGGACTAACTGAACATAGCTGCATTACACTTACATATGCACAAAAATTATCCGGAAGTACACATAAAAATTCGGTTGGTTTCATCCTTCCAAATTTGGAAGTCAAGTTTATTGATCCCGAAACAGGAAGATCCCTCCCAAGGAACACACCAGGGGAACTTTGTGTGAGAAGCCAATGTGTAATGCAAGGTAATCTATGAGTAAAATTATTTATGATAATATATTTTTTTAGACAAATGTTAGTGGTTAATTTGTTAGGGGGAGGCGAAAATTATTAACGGCAATACTACTGGACTACACCTTCGGAGACTTATGATAAAATTATATGATAAATGTACTATAAACTCTTTTTGTTTTTACTAGGTTATTATAAACAAGTGGATGAGACTGCTCAGACTATTGACAAAAATGGATGGCTTCACACTGGTGACATTGGATTCATAGATGATGAAGAAAATGTCTTTATTGTTGATCGTATTAAGGAGTTGATTAAATACAAAGGCTTCCAAGTAAGTTCTTGATGTTACATGTTTATTGTTACATGGAATAAAACATTATTTGTGGAACATAATTGCAAGGTCTTAGTGTGTGCGCACGCGCGCGAAAATAGGAGAAATCTAATTTGTAATGCAAGTTCTGTTTTGCAGTTTATTAATATGCATCTATAAGTCTAAGGAATCTTCTTCCCAAGTATAGGCTAAAATTAGTTTATGTGTATTCTTTTTTGAATGCAGGTTGCTCCTGCAGAGTTAGAGGCTATTTTGCTGTCTCATTCCTCAGTTGAAGATGCAGCTGTTGTACCGTAAGTAACCGCGACGATAATTTTTGTCATTCTTTTTAATATTACCTTTTCATTGGGATTTAAGATTGAGTTTAATTTTAATATACCGGCAGTGTAAAAGGTTCAATATATCCACAGATCACAACCAATCATATGTGTAAATTTAGAAATAGTTACGAATAAAATCAAACAGTTTTAATAGATAGTCTATACGAATTAAATCTTATAAGATTTAAACTATTTACAATATTTTGTTGTTTTGTGCAATGATTGTTCAGATTACCAGATGAAGAGGCAGGGGAAATCCCAGCTGCAAGTGTTGTTTTGAGCAAAGGTGCAAAAGAGAGTGAAGAAGATATTATGAACTATGTTGCTTCCAATGCTGCTCATTACAAGAAAGTGAGAGTGGTTCACTTTGTGGAAGCTATACCAAAATCACCTTCTGGTAAAATAATGAGAAGGCTTGTCAAAGAGAAGATGGTGGAAAAGATTAAGGAAAATAATTCCCTAACAAAGTCTAAGAATTTTTAA

Protein sequence

>MS.gene05651.t1

MGAYIENFVEENEHIFRSQYSPVPVPENVTLPEFVLQNAELYGDKVAFVDAESGKGVTYSEVVRDIHRFSKALRSLGLRKGNVVIVVLPNIVEYAIIALGIMDAGCVFSGANPASHTSEIKKQVESADAKLIVTNSSSHEKVKSLGLPLIVLGDELVEDAMNWNKLLEAGDRAGNDSMKEPIHQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFGVTQEMIGKVTTLGLIPFFHIYGITGICCATIRNKGKVVVMGKYDLKTFLNALITHEVTFAPIVPPIILGLVKNPIVDQFDLSKLKLQAIMTAAAPLAPELLTSFEHKFPGVLVQEAYGLTEHSCITLTYAQKLSGSTHKNSVGFILPNLEVKFIDPETGRSLPRNTPGELCVRSQCVMQGYYKQVDETAQTIDKNGWLHTGDIGFIDDEENVFIVDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEEAGEIPAASVVLSKGAKESEEDIMNYVASNAAHYKKVRVVHFVEAIPKSPSGKIMRRLVKEKMVEKIKENNSLTKSKNF