AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05651

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05651.t1 MTR_3g460770 97.292 554 14 1 1 554 1 553 0.0 1102
MS.gene05651.t1 MTR_2g105570 38.971 544 312 9 10 538 7 545 3.49e-137 409
MS.gene05651.t1 MTR_4g005750 39.366 536 313 7 11 538 7 538 9.55e-130 390
MS.gene05651.t1 MTR_5g007640 37.708 541 316 8 11 538 51 583 9.06e-127 384
MS.gene05651.t1 MTR_4g128337 38.333 540 319 6 10 540 12 546 4.92e-121 368
MS.gene05651.t1 MTR_4g057730 35.424 542 332 8 13 545 9 541 3.08e-120 365
MS.gene05651.t1 MTR_2g095510 36.245 538 330 7 12 542 8 539 1.73e-116 355
MS.gene05651.t1 MTR_1g026310 34.608 549 317 9 8 532 20 550 1.25e-113 349
MS.gene05651.t1 MTR_1g090737 38.048 502 299 5 36 532 62 556 4.77e-113 348
MS.gene05651.t1 MTR_1g063120 35.110 544 319 10 23 542 22 555 1.20e-105 328
MS.gene05651.t1 MTR_8g039720 35.046 545 322 12 8 532 17 549 9.38e-103 321
MS.gene05651.t1 MTR_1g063110 34.026 529 334 8 16 532 13 538 7.22e-99 310
MS.gene05651.t1 MTR_4g077900 37.190 484 286 9 70 542 2 478 1.38e-98 307
MS.gene05651.t1 MTR_4g057730 34.615 468 292 7 13 471 9 471 1.28e-97 305
MS.gene05651.t1 MTR_5g027480 34.637 537 335 8 15 542 26 555 2.18e-97 306
MS.gene05651.t1 MTR_3g088870 34.800 500 300 8 44 532 64 548 8.51e-95 300
MS.gene05651.t1 MTR_3g088880 35.354 495 301 9 44 532 65 546 3.29e-94 298
MS.gene05651.t1 MTR_5g027500 33.761 545 341 8 15 542 27 568 1.54e-88 284
MS.gene05651.t1 MTR_4g057730 33.184 446 284 7 13 449 9 449 1.36e-86 275
MS.gene05651.t1 MTR_1g073180 35.433 508 313 9 34 539 37 531 2.34e-86 277
MS.gene05651.t1 MTR_2g095510 33.708 445 282 7 12 449 8 446 6.18e-82 263
MS.gene05651.t1 MTR_1g073180 34.927 481 298 9 34 512 59 526 1.08e-77 254
MS.gene05651.t1 MTR_3g035130 27.912 498 331 12 57 541 32 514 4.87e-54 191
MS.gene05651.t1 MTR_1569s0010 27.043 514 333 10 57 535 22 528 9.04e-53 188
MS.gene05651.t1 MTR_1g026430 28.500 400 244 9 8 383 20 401 2.68e-52 184
MS.gene05651.t1 MTR_1g026470 28.607 402 245 9 8 385 20 403 4.72e-52 183
MS.gene05651.t1 MTR_5g008800 26.642 548 355 16 34 553 19 547 1.32e-42 160
MS.gene05651.t1 MTR_0803s0020 25.963 493 321 13 59 528 263 734 2.16e-42 163
MS.gene05651.t1 MTR_3g035130 27.982 436 286 12 57 479 32 452 5.36e-42 157
MS.gene05651.t1 MTR_5g076240 28.378 518 316 17 58 536 41 542 5.60e-41 156
MS.gene05651.t1 MTR_3g064420 25.847 561 329 16 34 537 19 549 3.70e-40 154
MS.gene05651.t1 MTR_8g074040 23.596 534 363 13 34 537 61 579 4.24e-39 151
MS.gene05651.t1 MTR_2g044180 26.404 534 319 15 58 540 47 557 1.40e-38 149
MS.gene05651.t1 MTR_5g008820 25.090 554 356 16 34 554 19 546 7.75e-38 147
MS.gene05651.t1 MTR_4g121600 26.616 526 328 16 58 540 47 557 1.38e-35 140
MS.gene05651.t1 MTR_8g074120 28.101 395 250 14 160 537 113 490 2.63e-35 139
MS.gene05651.t1 MTR_8g074040 25.806 434 286 13 127 537 41 461 1.42e-34 137
MS.gene05651.t1 MTR_2g044180 28.074 431 248 13 149 540 59 466 8.39e-33 131
MS.gene05651.t1 MTR_5g023730 25.326 537 352 16 34 538 21 540 1.65e-32 131
MS.gene05651.t1 MTR_5g076220 25.184 544 347 16 34 536 19 543 8.49e-31 126
MS.gene05651.t1 MTR_5g076200 24.494 543 352 18 34 536 19 543 1.14e-28 120
MS.gene05651.t1 MTR_0161s0050 23.693 574 360 20 14 536 3 549 5.22e-26 112
MS.gene05651.t1 MTR_4g011790 25.676 370 241 12 192 536 233 593 5.38e-24 106
MS.gene05651.t1 MTR_4g011790 25.895 363 235 12 192 529 233 586 3.51e-23 103
MS.gene05651.t1 MTR_4g013210 24.665 373 245 11 192 536 76 440 4.74e-23 102
MS.gene05651.t1 MTR_2g030240 23.897 544 340 17 58 547 29 552 2.60e-22 101
MS.gene05651.t1 MTR_4g011790 25.330 379 240 13 192 536 233 602 9.40e-22 99.8
MS.gene05651.t1 MTR_4g013210 25.617 324 215 10 192 497 228 543 1.27e-20 95.9
MS.gene05651.t1 MTR_2g030240 24.685 397 241 12 192 547 79 458 1.82e-20 94.7
MS.gene05651.t1 MTR_4g057755 46.667 75 40 0 398 472 46 120 3.54e-20 87.0
MS.gene05651.t1 MTR_4g013210 23.967 363 219 10 192 536 76 399 5.25e-20 92.8
MS.gene05651.t1 MTR_1054s0020 23.002 513 352 16 42 537 281 767 6.82e-20 94.4
MS.gene05651.t1 MTR_4g013210 23.967 363 219 10 192 536 228 551 1.49e-19 92.4
MS.gene05651.t1 MTR_7g084850 22.523 555 364 17 43 544 185 726 2.59e-19 92.4
MS.gene05651.t1 MTR_1g104810 33.155 187 105 8 286 459 389 568 3.02e-19 92.0
MS.gene05651.t1 MTR_1g104810 33.889 180 99 8 293 459 329 501 3.10e-19 91.7
MS.gene05651.t1 MTR_7g109830 26.104 498 276 23 48 469 66 547 1.64e-18 89.7
MS.gene05651.t1 MTR_5g009360 26.389 360 202 16 162 469 75 423 3.22e-18 88.2
MS.gene05651.t1 MTR_5g009360 26.389 360 202 16 162 469 201 549 4.16e-18 88.2
MS.gene05651.t1 MTR_1g026350 28.571 126 88 1 15 140 26 149 4.31e-18 82.4
MS.gene05651.t1 MTR_8g083170 36.735 196 105 7 330 512 475 664 1.26e-17 87.0
MS.gene05651.t1 MTR_5g009350 26.536 358 204 14 162 469 201 549 3.54e-17 85.5
MS.gene05651.t1 MTR_5g009350 26.536 358 204 14 162 469 201 549 3.55e-17 85.5
MS.gene05651.t1 MTR_5g009350 26.462 359 205 14 162 470 201 550 4.47e-17 84.7
MS.gene05651.t1 MTR_5g009350 26.257 358 205 14 162 469 201 549 5.06e-17 84.7
MS.gene05651.t1 MTR_3g084470 36.000 175 98 5 330 493 468 639 5.55e-17 84.7
MS.gene05651.t1 MTR_8g099420 25.770 357 200 14 162 465 202 546 9.53e-17 84.0
MS.gene05651.t1 MTR_3g084450 32.673 202 114 7 330 518 264 456 1.04e-15 80.5
MS.gene05651.t1 MTR_3g084450 32.673 202 114 7 330 518 472 664 1.28e-15 80.5
MS.gene05651.t1 MTR_3g088890 48.333 60 31 0 444 503 10 69 2.84e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05651.t1 AT1G62940 72.932 532 141 2 10 539 7 537 0.0 790
MS.gene05651.t1 AT3G21240 37.687 536 321 6 12 538 19 550 5.00e-129 389
MS.gene05651.t1 AT1G65060 38.534 532 316 6 14 538 33 560 9.06e-127 383
MS.gene05651.t1 AT4G05160 36.347 542 327 8 13 542 9 544 9.56e-123 372
MS.gene05651.t1 AT1G20480 37.912 546 316 7 11 542 29 565 1.09e-122 372
MS.gene05651.t1 AT1G20510 35.564 523 326 7 16 532 17 534 1.01e-121 369
MS.gene05651.t1 AT3G21230 36.890 553 324 8 6 538 17 564 9.39e-118 360
MS.gene05651.t1 AT1G51680 37.106 539 319 8 15 538 24 557 1.45e-115 354
MS.gene05651.t1 AT3G21240 37.393 468 280 6 12 470 19 482 4.54e-107 330
MS.gene05651.t1 AT3G21240 37.393 468 280 6 12 470 19 482 4.54e-107 330
MS.gene05651.t1 AT5G63380 38.697 491 284 10 48 532 69 548 2.94e-106 330
MS.gene05651.t1 AT3G21230 36.295 529 306 9 6 514 17 534 9.21e-104 323
MS.gene05651.t1 AT1G51680 36.706 504 299 8 15 503 24 522 1.07e-102 320
MS.gene05651.t1 AT1G20500 31.707 533 348 8 8 532 16 540 1.02e-101 318
MS.gene05651.t1 AT4G19010 37.132 509 307 10 42 542 59 562 2.95e-101 317
MS.gene05651.t1 AT5G38120 32.902 541 335 9 16 542 24 550 2.98e-100 314
MS.gene05651.t1 AT1G20510 33.550 462 296 7 16 471 17 473 8.48e-98 305
MS.gene05651.t1 AT3G21230 36.289 485 284 8 6 470 17 496 3.55e-94 296
MS.gene05651.t1 AT1G51680 36.306 471 280 8 15 470 24 489 5.74e-93 293
MS.gene05651.t1 AT1G65060 35.281 445 277 6 14 451 33 473 5.89e-92 291
MS.gene05651.t1 AT5G38120 32.072 502 313 9 16 503 24 511 4.54e-87 279
MS.gene05651.t1 AT1G20510 31.818 440 289 7 16 449 17 451 2.62e-85 273
MS.gene05651.t1 AT5G38120 32.340 470 290 9 16 471 24 479 1.90e-79 258
MS.gene05651.t1 AT5G38120 32.340 470 290 9 16 471 24 479 1.90e-79 258
MS.gene05651.t1 AT3G21230 31.010 416 262 9 10 405 21 431 1.43e-52 186
MS.gene05651.t1 AT1G20490 27.635 427 279 10 8 418 16 428 9.78e-52 183
MS.gene05651.t1 AT1G20490 27.635 427 279 10 8 418 16 428 9.78e-52 183
MS.gene05651.t1 AT3G48990 28.599 521 342 12 35 541 9 513 5.47e-50 180
MS.gene05651.t1 AT1G21530 26.703 558 344 16 23 536 5 541 5.84e-42 159
MS.gene05651.t1 AT1G21530 26.703 558 346 16 23 536 5 543 1.68e-41 157
MS.gene05651.t1 AT5G16370 26.617 541 339 18 34 536 19 539 3.45e-40 154
MS.gene05651.t1 AT5G16340 27.140 549 339 18 34 541 19 547 6.23e-40 153
MS.gene05651.t1 AT1G21540 26.476 559 347 15 23 536 5 544 8.35e-40 152
MS.gene05651.t1 AT1G77240 26.071 537 357 17 29 536 14 539 2.76e-39 151
MS.gene05651.t1 AT1G75960 28.125 544 337 16 29 536 14 539 1.22e-38 149
MS.gene05651.t1 AT1G20560 27.491 542 334 17 34 537 21 541 3.19e-38 148
MS.gene05651.t1 AT2G17650 25.227 551 351 16 34 540 66 599 9.81e-38 147
MS.gene05651.t1 AT1G65890 25.623 562 361 16 34 552 19 566 8.85e-36 141
MS.gene05651.t1 AT1G66120 24.953 537 357 14 34 536 19 543 1.12e-35 141
MS.gene05651.t1 AT1G65880 25.735 544 352 15 34 536 19 551 3.26e-35 140
MS.gene05651.t1 AT1G20560 29.024 379 229 11 180 537 104 463 3.36e-32 130
MS.gene05651.t1 AT1G76290 27.407 540 340 19 34 542 19 537 1.77e-31 128
MS.gene05651.t1 AT3G16910 25.843 534 323 18 58 540 49 560 1.26e-30 126
MS.gene05651.t1 AT1G68270 24.304 539 325 16 34 531 19 515 2.27e-30 125
MS.gene05651.t1 AT5G27600 28.779 344 185 15 161 457 239 569 3.35e-25 110
MS.gene05651.t1 AT3G16170 21.529 497 351 10 70 538 119 604 2.20e-24 107
MS.gene05651.t1 AT3G05970 29.630 324 170 11 181 457 257 569 5.63e-23 103
MS.gene05651.t1 AT1G30520 22.563 554 350 13 47 543 23 554 2.25e-22 101
MS.gene05651.t1 AT1G30520 22.563 554 350 13 47 543 23 554 2.25e-22 101
MS.gene05651.t1 AT1G64400 25.813 492 283 20 49 469 70 550 8.74e-22 100
MS.gene05651.t1 AT4G23850 25.407 492 285 20 49 469 70 550 4.02e-20 94.7
MS.gene05651.t1 AT1G49430 23.984 492 286 21 38 455 60 537 3.16e-17 85.5
MS.gene05651.t1 AT1G30520 22.395 451 285 10 47 454 23 451 1.10e-14 77.0
MS.gene05651.t1 AT1G30520 22.395 451 285 10 47 454 23 451 1.10e-14 77.0
MS.gene05651.t1 AT2G47240 34.320 169 102 7 305 469 325 488 1.52e-13 73.9
MS.gene05651.t1 AT2G47240 34.320 169 102 7 305 469 384 547 1.53e-13 73.9
MS.gene05651.t1 AT2G47240 34.320 169 102 7 305 469 384 547 1.53e-13 73.9
MS.gene05651.t1 AT2G47240 34.320 169 102 7 305 469 384 547 1.53e-13 73.9
MS.gene05651.t1 AT3G23790 32.164 171 92 5 330 479 473 640 1.75e-13 73.9
MS.gene05651.t1 AT4G14070 32.099 162 96 4 330 480 489 647 4.06e-13 72.8
MS.gene05651.t1 AT4G14070 26.556 241 149 7 27 241 95 333 3.10e-12 69.7

Find 114 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCATATAGTTCAGCATTT+TGG 0.132681 3.2:-51281046 None:intergenic
GCTATTTGTGACAATTAATT+TGG 0.178651 3.2:-51281324 None:intergenic
GGGAGGGATCTTCCTGTTTC+GGG 0.186335 3.2:-51282444 None:intergenic
ATAAACTTGACTTCCAAATT+TGG 0.188964 3.2:-51282417 None:intergenic
ATGGCATACTCTACAATATT+TGG 0.200376 3.2:-51281203 None:intergenic
TGGTTTCATCCTTCCAAATT+TGG 0.211447 3.2:+51282404 MS.gene05651:CDS
ATTGTTCCACCTATTATTCT+TGG 0.237238 3.2:+51281868 MS.gene05651:CDS
ATTGGAAAAGTCACTACATT+AGG 0.245143 3.2:+51281700 MS.gene05651:CDS
GCATGGCACAAAGGTCATTT+TGG 0.254488 3.2:-51281573 None:intergenic
TTAACCAATCCAAGAATAAT+AGG 0.258003 3.2:-51281877 None:intergenic
TGGGAGGGATCTTCCTGTTT+CGG 0.259520 3.2:-51282445 None:intergenic
GAAGATGGTGGAAAAGATTA+AGG 0.261374 3.2:+51283582 MS.gene05651:CDS
CTTTATTGTTGATCGTATTA+AGG 0.261618 3.2:+51282788 MS.gene05651:CDS
AATCTTTGTTCCACACTCTT+TGG 0.292337 3.2:+51281661 MS.gene05651:CDS
GAATATGTTGTGCAACTATT+AGG 0.306968 3.2:+51281758 MS.gene05651:CDS
CATGATTCCCAAAGCAATAA+TGG 0.317628 3.2:-51281222 None:intergenic
TCCTTTGAACATAAGTTTCC+TGG 0.330815 3.2:+51281991 MS.gene05651:CDS
AGTTCCCCTGGTGTGTTCCT+TGG 0.340867 3.2:-51282465 None:intergenic
ATTTCCCCTGCCTCTTCATC+TGG 0.345841 3.2:-51283391 None:intergenic
TCAAAGGAAGTGAGTAATTC+AGG 0.346215 3.2:-51281976 None:intergenic
GAGTATGCCATTATTGCTTT+GGG 0.348885 3.2:+51281215 MS.gene05651:CDS
AGAGTATGCCATTATTGCTT+TGG 0.356223 3.2:+51281214 MS.gene05651:CDS
GGTCTCTTGGTTTGAGAAAA+GGG 0.362079 3.2:+51281159 MS.gene05651:CDS
GTTCCCCTGGTGTGTTCCTT+GGG 0.362580 3.2:-51282464 None:intergenic
AGGTCTCTTGGTTTGAGAAA+AGG 0.379071 3.2:+51281158 MS.gene05651:CDS
CTCCAAAATGCTGAACTATA+TGG 0.388619 3.2:+51281044 MS.gene05651:CDS
TAGCCAATATTCGCCCGTTC+CGG 0.390828 3.2:+51280989 MS.gene05651:CDS
GGTTGCTCCTGCAGAGTTAG+AGG 0.394433 3.2:+51283061 MS.gene05651:intron
AAGTTTATTGATCCCGAAAC+AGG 0.394440 3.2:+51282432 MS.gene05651:CDS
GTACCGGAACGGGCGAATAT+TGG 0.396199 3.2:-51280992 None:intergenic
TCCACCTATTATTCTTGGAT+TGG 0.398159 3.2:+51281873 MS.gene05651:CDS
GGTGTAACACAAGAAATGAT+TGG 0.398343 3.2:+51281682 MS.gene05651:CDS
GCTATACCAAAATCACCTTC+TGG 0.399912 3.2:+51283532 MS.gene05651:CDS
ACCTGAAAATGTAACATTGC+CGG 0.414752 3.2:+51281013 MS.gene05651:CDS
CATTATTGCTTTGGGAATCA+TGG 0.418941 3.2:+51281223 MS.gene05651:CDS
CTCAAAACAACACTTGCAGC+TGG 0.420863 3.2:-51283415 None:intergenic
TTGGAAAAGTCACTACATTA+GGG 0.421139 3.2:+51281701 MS.gene05651:CDS
CCTGTTGTGCCTGATGAAAA+TGG 0.423310 3.2:-51281595 None:intergenic
TCAAAGGCTTTAAGGTCTCT+TGG 0.427536 3.2:+51281146 MS.gene05651:CDS
AGAATAATAGGTGGAACAAT+AGG 0.427941 3.2:-51281865 None:intergenic
TGGAACAAAGATTTGCTACT+AGG 0.430048 3.2:-51281651 None:intergenic
TGGTGATAAGGTTGCATTTG+TGG 0.435222 3.2:+51281064 MS.gene05651:CDS
AACTTCTTGAAGCCGGAGAC+CGG 0.442959 3.2:+51281518 MS.gene05651:CDS
AGTGAGAGTGGTTCACTTTG+TGG 0.451776 3.2:+51283507 MS.gene05651:CDS
TTTCACATTTATGGCATCAC+TGG 0.452413 3.2:+51281736 MS.gene05651:CDS
ATCATTCCCTGCCCGGTCTC+CGG 0.452974 3.2:-51281530 None:intergenic
AGATCAAATTGATCAACTAT+AGG 0.454729 3.2:-51281904 None:intergenic
TGGTGCTGCAGCAGTCATAA+TGG 0.468603 3.2:-51281947 None:intergenic
ATTTCCGACGTATGTGAAGC+TGG 0.470134 3.2:-51281275 None:intergenic
AAAATTCTTAGACTTTGTTA+GGG 0.471032 3.2:-51283614 None:intergenic
CCCTGGTGTGTTCCTTGGGA+GGG 0.472351 3.2:-51282460 None:intergenic
TTGATACAGGTGAAAAGTCT+AGG 0.477186 3.2:+51281439 MS.gene05651:intron
TCATTGAATCATTCCCTGCC+CGG 0.482487 3.2:-51281537 None:intergenic
CTTCTCACACAAAGTTCCCC+TGG 0.483470 3.2:-51282477 None:intergenic
CTTGAAGCCGGAGACCGGGC+AGG 0.484775 3.2:+51281523 MS.gene05651:CDS
GATGCTGGTTGTGTGTTCTC+AGG 0.486269 3.2:+51281245 MS.gene05651:CDS
TGTGACTTCATGTGTAATCA+AGG 0.491977 3.2:-51281836 None:intergenic
CTTCAACAAGTTCATCTCCT+AGG 0.495549 3.2:-51281477 None:intergenic
TTTCTTGTAATGAGCAGCAT+TGG 0.498730 3.2:-51283485 None:intergenic
CCCCTGGTGTGTTCCTTGGG+AGG 0.500432 3.2:-51282461 None:intergenic
TGCTGAACTATATGGTGATA+AGG 0.502771 3.2:+51281052 MS.gene05651:CDS
AAATAGCTCAAGCCATGAAA+AGG 0.506415 3.2:+51281340 MS.gene05651:CDS
TTGTTGAAGATGCTATGAAC+TGG 0.506560 3.2:+51281491 MS.gene05651:CDS
AAAATAGCCTCTAACTCTGC+AGG 0.509463 3.2:-51283068 None:intergenic
GTGCAACTATTAGGAACAAA+GGG 0.513378 3.2:+51281767 MS.gene05651:CDS
GTGGATGCTGAGAGTGGAAA+AGG 0.515304 3.2:+51281083 MS.gene05651:CDS
GCTTTGGGAATCATGGATGC+TGG 0.516352 3.2:+51281230 MS.gene05651:CDS
TAACTTATAGTGAGGTTGTG+AGG 0.520474 3.2:+51281108 MS.gene05651:CDS
CAAAGGGAAAGTAGTGGTGA+TGG 0.526343 3.2:+51281783 MS.gene05651:CDS
AGATTACCAGATGAAGAGGC+AGG 0.529521 3.2:+51283385 MS.gene05651:intron
TGGCTTCACACTGGTGACAT+TGG 0.530611 3.2:+51282741 MS.gene05651:CDS
ACTTGACTTCCAAATTTGGA+AGG 0.538137 3.2:-51282413 None:intergenic
GTTCAGATTACCAGATGAAG+AGG 0.538232 3.2:+51283381 MS.gene05651:intron
ACCAGGAAACTTATGTTCAA+AGG 0.540093 3.2:-51281992 None:intergenic
AACTTATAGTGAGGTTGTGA+GGG 0.541554 3.2:+51281109 MS.gene05651:CDS
CTGCAGCAGTCATAATGGCT+TGG 0.542007 3.2:-51281942 None:intergenic
GGGCTACCTTTGATAGTCCT+AGG 0.546072 3.2:+51281460 MS.gene05651:CDS
AAGGCTTGTCAAAGAGAAGA+TGG 0.550369 3.2:+51283567 MS.gene05651:CDS
ACTTCTTGAAGCCGGAGACC+GGG 0.555334 3.2:+51281519 MS.gene05651:CDS
TCCTGGTGTTCTTGTCCAAG+AGG 0.557522 3.2:+51282008 MS.gene05651:CDS
TGGAACAAACTTCTTGAAGC+CGG 0.560308 3.2:+51281511 MS.gene05651:CDS
AAAGGGAAAGTAGTGGTGAT+GGG 0.563703 3.2:+51281784 MS.gene05651:CDS
GGCACAACAGGAATGTCAAA+GGG 0.563766 3.2:+51281607 MS.gene05651:CDS
TCAAAACAACACTTGCAGCT+GGG 0.565486 3.2:-51283414 None:intergenic
TCATCTCCTAGGACTATCAA+AGG 0.573828 3.2:-51281466 None:intergenic
AGGCACAACAGGAATGTCAA+AGG 0.574039 3.2:+51281606 MS.gene05651:CDS
TCCCTCCCAAGGAACACACC+AGG 0.574638 3.2:+51282459 MS.gene05651:CDS
AAGGAGTTGATTAAATACAA+AGG 0.576483 3.2:+51282807 MS.gene05651:CDS
GGCAGGGAATGATTCAATGA+AGG 0.578185 3.2:+51281540 MS.gene05651:CDS
GATTACCTTGCATTACACAT+TGG 0.583044 3.2:-51282500 None:intergenic
TTGAAGCCGGAGACCGGGCA+GGG 0.584887 3.2:+51281524 MS.gene05651:CDS
TTGTGTTACACCAAAGAGTG+TGG 0.585398 3.2:-51281671 None:intergenic
TGTGCAACTATTAGGAACAA+AGG 0.585600 3.2:+51281766 MS.gene05651:CDS
ATGAAAATGGCATGGCACAA+AGG 0.593972 3.2:-51281582 None:intergenic
CCCTCCCAAGGAACACACCA+GGG 0.599440 3.2:+51282460 MS.gene05651:CDS
ATTACCAGATGAAGAGGCAG+GGG 0.599737 3.2:+51283387 MS.gene05651:CDS
TGATACAGGTGAAAAGTCTA+GGG 0.600040 3.2:+51281440 MS.gene05651:intron
ACTAGGTTATTATAAACAAG+TGG 0.600754 3.2:+51282686 MS.gene05651:intron
GTGAGTAATTCAGGTGCAAG+TGG 0.605717 3.2:-51281967 None:intergenic
GATTACCAGATGAAGAGGCA+GGG 0.608775 3.2:+51283386 MS.gene05651:intron
AAAAGGAGTAACTTATAGTG+AGG 0.610280 3.2:+51281100 MS.gene05651:CDS
CTTCTGGTAAAATAATGAGA+AGG 0.618252 3.2:+51283548 MS.gene05651:CDS
AACAGCTGCATCTTCAACTG+AGG 0.622182 3.2:-51283102 None:intergenic
ACCTCTTGGACAAGAACACC+AGG 0.622266 3.2:-51282009 None:intergenic
GCATTTGTGGATGCTGAGAG+TGG 0.629816 3.2:+51281077 MS.gene05651:CDS
ACCAATCCAAGAATAATAGG+TGG 0.632007 3.2:-51281874 None:intergenic
TAGGAACAAAGGGAAAGTAG+TGG 0.635216 3.2:+51281777 MS.gene05651:CDS
AAACAGGAAGATCCCTCCCA+AGG 0.651121 3.2:+51282448 MS.gene05651:CDS
TCATTACAAGAAAGTGAGAG+TGG 0.654711 3.2:+51283495 MS.gene05651:CDS
TAATCCAGCTTCACATACGT+CGG 0.679378 3.2:+51281271 MS.gene05651:CDS
CCTCCCAAGGAACACACCAG+GGG 0.693772 3.2:+51282461 MS.gene05651:CDS
AGAAGCCAATGTGTAATGCA+AGG 0.701599 3.2:+51282495 MS.gene05651:CDS
GCTTGTCAAAGAGAAGATGG+TGG 0.703710 3.2:+51283570 MS.gene05651:CDS
TGTGCCTGATGAAAATGGCA+TGG 0.715816 3.2:-51281590 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATCAAAGAGTATATAAAA+AGG - chr3.2:51281410-51281429 None:intergenic 15.0%
!!! TGAGTTTAATTTTAATATAC+CGG + chr3.2:51283196-51283215 MS.gene05651:intron 15.0%
!!! TTTAATATTACCTTTTCATT+GGG + chr3.2:51283164-51283183 MS.gene05651:intron 15.0%
!!! TTTTAATATTACCTTTTCAT+TGG + chr3.2:51283163-51283182 MS.gene05651:intron 15.0%
!! AAAAATTCTTAGACTTTGTT+AGG - chr3.2:51283618-51283637 None:intergenic 20.0%
!! AAAATTCTTAGACTTTGTTA+GGG - chr3.2:51283617-51283636 None:intergenic 20.0%
!! ATGGAATAAAACATTATTTG+TGG + chr3.2:51282869-51282888 MS.gene05651:intron 20.0%
!! TCTAAATTTACACATATGAT+TGG - chr3.2:51283257-51283276 None:intergenic 20.0%
!!! AAACTCTTTTTGTTTTTACT+AGG + chr3.2:51282669-51282688 MS.gene05651:intron 20.0%
!!! AGTTCAATTAAAGACTTTTT+AGG + chr3.2:51282061-51282080 MS.gene05651:intron 20.0%
!!! ATTCCATTTTTTCACATTTA+TGG + chr3.2:51281727-51281746 MS.gene05651:CDS 20.0%
!!! GTTCAATTAAAGACTTTTTA+GGG + chr3.2:51282062-51282081 MS.gene05651:intron 20.0%
!!! TTCTACAAAATTTTCTATGT+AGG - chr3.2:51280949-51280968 None:intergenic 20.0%
!!! TTTTTTATAGTATGTGTTTC+TGG + chr3.2:51282137-51282156 MS.gene05651:intron 20.0%
!!! TTTTTTTAGACAAATGTTAG+TGG + chr3.2:51282551-51282570 MS.gene05651:intron 20.0%
! AATATGCATCTATAAGTCTA+AGG + chr3.2:51282981-51283000 MS.gene05651:intron 25.0%
! AATCTTAAATCCCAATGAAA+AGG - chr3.2:51283177-51283196 None:intergenic 25.0%
! ACATATGCACAAAAATTATC+CGG + chr3.2:51282360-51282379 MS.gene05651:CDS 25.0%
! ACTAGGTTATTATAAACAAG+TGG + chr3.2:51282686-51282705 MS.gene05651:intron 25.0%
! AGATCAAATTGATCAACTAT+AGG - chr3.2:51281907-51281926 None:intergenic 25.0%
! ATAAACTTGACTTCCAAATT+TGG - chr3.2:51282420-51282439 None:intergenic 25.0%
! ATGCCATAAATGTGAAAAAA+TGG - chr3.2:51281733-51281752 None:intergenic 25.0%
! CTTTATTGTTGATCGTATTA+AGG + chr3.2:51282788-51282807 MS.gene05651:CDS 25.0%
! GCTATTTGTGACAATTAATT+TGG - chr3.2:51281327-51281346 None:intergenic 25.0%
! GTTACATGTTTATTGTTACA+TGG + chr3.2:51282850-51282869 MS.gene05651:intron 25.0%
! TTAACCAATCCAAGAATAAT+AGG - chr3.2:51281880-51281899 None:intergenic 25.0%
!! AAGGAGTTGATTAAATACAA+AGG + chr3.2:51282807-51282826 MS.gene05651:CDS 25.0%
!! ATAGATTTTCAAAGGCTTTA+AGG + chr3.2:51281138-51281157 MS.gene05651:CDS 25.0%
!! CACTTTAGAAACACATAAAA+GGG - chr3.2:51282285-51282304 None:intergenic 25.0%
!! GGATATACATAGATTTTCAA+AGG + chr3.2:51281130-51281149 MS.gene05651:CDS 25.0%
!!! AACTAATTTTAGCCTATACT+TGG - chr3.2:51283017-51283036 None:intergenic 25.0%
!!! ACTAATTTTAGCCTATACTT+GGG - chr3.2:51283016-51283035 None:intergenic 25.0%
!!! ATGTTAGTGGTTAATTTGTT+AGG + chr3.2:51282564-51282583 MS.gene05651:intron 25.0%
!!! TGAACTAACAATAGTTTTGA+AGG - chr3.2:51282047-51282066 None:intergenic 25.0%
!!! TGATTCATCATCATTTTTGA+AGG - chr3.2:51281371-51281390 None:intergenic 25.0%
!!! TGTTAGTGGTTAATTTGTTA+GGG + chr3.2:51282565-51282584 MS.gene05651:intron 25.0%
AAAAGGAGTAACTTATAGTG+AGG + chr3.2:51281100-51281119 MS.gene05651:CDS 30.0%
AATGACAAAAATTATCGTCG+CGG - chr3.2:51283141-51283160 None:intergenic 30.0%
AGAATAATAGGTGGAACAAT+AGG - chr3.2:51281868-51281887 None:intergenic 30.0%
AGACTATTGACAAAAATGGA+TGG + chr3.2:51282721-51282740 MS.gene05651:CDS 30.0%
AGTACACATAAAAATTCGGT+TGG + chr3.2:51282384-51282403 MS.gene05651:CDS 30.0%
ATGGCATACTCTACAATATT+TGG - chr3.2:51281206-51281225 None:intergenic 30.0%
ATTATTAACGGCAATACTAC+TGG + chr3.2:51282598-51282617 MS.gene05651:intron 30.0%
ATTGGAAAAGTCACTACATT+AGG + chr3.2:51281700-51281719 MS.gene05651:CDS 30.0%
ATTGTTCCACCTATTATTCT+TGG + chr3.2:51281868-51281887 MS.gene05651:CDS 30.0%
ATTTGTGGAACATAATTGCA+AGG + chr3.2:51282884-51282903 MS.gene05651:intron 30.0%
CTTCTGGTAAAATAATGAGA+AGG + chr3.2:51283548-51283567 MS.gene05651:CDS 30.0%
GAATATGTTGTGCAACTATT+AGG + chr3.2:51281758-51281777 MS.gene05651:CDS 30.0%
TGTAACATCAAGAACTTACT+TGG - chr3.2:51282836-51282855 None:intergenic 30.0%
TGTTGTCATGTGATTGAAAA+AGG + chr3.2:51282182-51282201 MS.gene05651:intron 30.0%
TTGGAAAAGTCACTACATTA+GGG + chr3.2:51281701-51281720 MS.gene05651:CDS 30.0%
! ATTTTACCAGAAGGTGATTT+TGG - chr3.2:51283541-51283560 None:intergenic 30.0%
! ATTTTATCATAAGTCTCCGA+AGG - chr3.2:51282630-51282649 None:intergenic 30.0%
! CGAATTTTTATGTGTACTTC+CGG - chr3.2:51282382-51282401 None:intergenic 30.0%
! CGGAAGTACACATAAAAATT+CGG + chr3.2:51282380-51282399 MS.gene05651:CDS 30.0%
! GCACTTTAGAAACACATAAA+AGG - chr3.2:51282286-51282305 None:intergenic 30.0%
!! ATTTGATACAGTGTTGATAC+AGG + chr3.2:51281426-51281445 MS.gene05651:intron 30.0%
!! CTTCTCATTATTTTACCAGA+AGG - chr3.2:51283550-51283569 None:intergenic 30.0%
!! GTTAGTGGTTAATTTGTTAG+GGG + chr3.2:51282566-51282585 MS.gene05651:intron 30.0%
!! TTAGTGGTTAATTTGTTAGG+GGG + chr3.2:51282567-51282586 MS.gene05651:intron 30.0%
!! TTATAGTATGTGTTTCTGGA+GGG + chr3.2:51282141-51282160 MS.gene05651:intron 30.0%
!! TTTATAGTATGTGTTTCTGG+AGG + chr3.2:51282140-51282159 MS.gene05651:intron 30.0%
!!! AATGTTACATTTTCAGGTAC+CGG - chr3.2:51281011-51281030 None:intergenic 30.0%
!!! GTGTATTCTTTTTTGAATGC+AGG + chr3.2:51283040-51283059 MS.gene05651:intron 30.0%
!!! TAAAGACTTTTTAGGGTTTG+TGG + chr3.2:51282069-51282088 MS.gene05651:intron 30.0%
!!! TTTTTTCTTTTGCAGGCATA+TGG + chr3.2:51282309-51282328 MS.gene05651:intron 30.0%
AAATAGCTCAAGCCATGAAA+AGG + chr3.2:51281340-51281359 MS.gene05651:CDS 35.0%
AACTTATAGTGAGGTTGTGA+GGG + chr3.2:51281109-51281128 MS.gene05651:CDS 35.0%
AAGTTTATTGATCCCGAAAC+AGG + chr3.2:51282432-51282451 MS.gene05651:CDS 35.0%
AATCTTTGTTCCACACTCTT+TGG + chr3.2:51281661-51281680 MS.gene05651:CDS 35.0%
ACCAATCCAAGAATAATAGG+TGG - chr3.2:51281877-51281896 None:intergenic 35.0%
ACCAGGAAACTTATGTTCAA+AGG - chr3.2:51281995-51282014 None:intergenic 35.0%
ACCTGAAAATGTAACATTGC+CGG + chr3.2:51281013-51281032 MS.gene05651:CDS 35.0%
ACTTGACTTCCAAATTTGGA+AGG - chr3.2:51282416-51282435 None:intergenic 35.0%
AGAAACACATAAAAGGGCAA+AGG - chr3.2:51282279-51282298 None:intergenic 35.0%
AGAGTATGCCATTATTGCTT+TGG + chr3.2:51281214-51281233 MS.gene05651:CDS 35.0%
ATGTGATTGAAAAAGGTCAC+GGG + chr3.2:51282189-51282208 MS.gene05651:intron 35.0%
CATGATTCCCAAAGCAATAA+TGG - chr3.2:51281225-51281244 None:intergenic 35.0%
CATGTGATTGAAAAAGGTCA+CGG + chr3.2:51282188-51282207 MS.gene05651:intron 35.0%
CTCCAAAATGCTGAACTATA+TGG + chr3.2:51281044-51281063 MS.gene05651:CDS 35.0%
GAAACACATAAAAGGGCAAA+GGG - chr3.2:51282278-51282297 None:intergenic 35.0%
GAGTATGCCATTATTGCTTT+GGG + chr3.2:51281215-51281234 MS.gene05651:CDS 35.0%
GATTACCTTGCATTACACAT+TGG - chr3.2:51282503-51282522 None:intergenic 35.0%
GCTCAGACTATTGACAAAAA+TGG + chr3.2:51282717-51282736 MS.gene05651:CDS 35.0%
GGTGTAACACAAGAAATGAT+TGG + chr3.2:51281682-51281701 MS.gene05651:CDS 35.0%
GTGCAACTATTAGGAACAAA+GGG + chr3.2:51281767-51281786 MS.gene05651:CDS 35.0%
TAACTTATAGTGAGGTTGTG+AGG + chr3.2:51281108-51281127 MS.gene05651:CDS 35.0%
TAATATACCGGCAGTGTAAA+AGG + chr3.2:51283208-51283227 MS.gene05651:intron 35.0%
TCAAAGGAAGTGAGTAATTC+AGG - chr3.2:51281979-51281998 None:intergenic 35.0%
TCATTACAAGAAAGTGAGAG+TGG + chr3.2:51283495-51283514 MS.gene05651:CDS 35.0%
TCCACCTATTATTCTTGGAT+TGG + chr3.2:51281873-51281892 MS.gene05651:CDS 35.0%
TCCTTTGAACATAAGTTTCC+TGG + chr3.2:51281991-51282010 MS.gene05651:CDS 35.0%
TGATACAGGTGAAAAGTCTA+GGG + chr3.2:51281440-51281459 MS.gene05651:intron 35.0%
TGCTGAACTATATGGTGATA+AGG + chr3.2:51281052-51281071 MS.gene05651:CDS 35.0%
TGGTTTCATCCTTCCAAATT+TGG + chr3.2:51282404-51282423 MS.gene05651:CDS 35.0%
TGTGACTTCATGTGTAATCA+AGG - chr3.2:51281839-51281858 None:intergenic 35.0%
TGTGCAACTATTAGGAACAA+AGG + chr3.2:51281766-51281785 MS.gene05651:CDS 35.0%
TTGATACAGGTGAAAAGTCT+AGG + chr3.2:51281439-51281458 MS.gene05651:intron 35.0%
TTGTTGAAGATGCTATGAAC+TGG + chr3.2:51281491-51281510 MS.gene05651:CDS 35.0%
TTTCACATTTATGGCATCAC+TGG + chr3.2:51281736-51281755 MS.gene05651:CDS 35.0%
TTTCTTGTAATGAGCAGCAT+TGG - chr3.2:51283488-51283507 None:intergenic 35.0%
! ATATGATTGGTTGTGATCTG+TGG - chr3.2:51283244-51283263 None:intergenic 35.0%
! CACCATATAGTTCAGCATTT+TGG - chr3.2:51281049-51281068 None:intergenic 35.0%
! TATTGAACCTTTTACACTGC+CGG - chr3.2:51283218-51283237 None:intergenic 35.0%
! TTGAAGGAGTTACCTTTTCA+TGG - chr3.2:51281355-51281374 None:intergenic 35.0%
!! CAAAGGTCATTTTGGTGAAT+TGG - chr3.2:51281568-51281587 None:intergenic 35.0%
!! CATTATTGCTTTGGGAATCA+TGG + chr3.2:51281223-51281242 MS.gene05651:CDS 35.0%
!! GAAGATGGTGGAAAAGATTA+AGG + chr3.2:51283582-51283601 MS.gene05651:CDS 35.0%
!! TATAGTATGTGTTTCTGGAG+GGG + chr3.2:51282142-51282161 MS.gene05651:intron 35.0%
!! TGGAACAAAGATTTGCTACT+AGG - chr3.2:51281654-51281673 None:intergenic 35.0%
!!! GTGCTAGTTTTTTCTTTTGC+AGG + chr3.2:51282302-51282321 MS.gene05651:intron 35.0%
AAAAATGGATGGCTTCACAC+TGG + chr3.2:51282732-51282751 MS.gene05651:CDS 40.0%
AAAATAGCCTCTAACTCTGC+AGG - chr3.2:51283071-51283090 None:intergenic 40.0%
AAAGGGAAAGTAGTGGTGAT+GGG + chr3.2:51281784-51281803 MS.gene05651:CDS 40.0%
AAGGCTTGTCAAAGAGAAGA+TGG + chr3.2:51283567-51283586 MS.gene05651:CDS 40.0%
AGAAGCCAATGTGTAATGCA+AGG + chr3.2:51282495-51282514 MS.gene05651:CDS 40.0%
AGTCTTGGAAACAACCTTCA+CGG + chr3.2:51282216-51282235 MS.gene05651:intron 40.0%
ATACTACTGGACTACACCTT+CGG + chr3.2:51282611-51282630 MS.gene05651:intron 40.0%
ATGAAAATGGCATGGCACAA+AGG - chr3.2:51281585-51281604 None:intergenic 40.0%
ATTATCGTCGCGGTTACTTA+CGG - chr3.2:51283131-51283150 None:intergenic 40.0%
CTTCAACAAGTTCATCTCCT+AGG - chr3.2:51281480-51281499 None:intergenic 40.0%
GCTATACCAAAATCACCTTC+TGG + chr3.2:51283532-51283551 MS.gene05651:CDS 40.0%
GGAATCTTCTTCCCAAGTAT+AGG + chr3.2:51283002-51283021 MS.gene05651:intron 40.0%
GGATGAAAGTGATAACCTCT+TGG - chr3.2:51282026-51282045 None:intergenic 40.0%
GGGGAGGCGAAAATTATTAA+CGG + chr3.2:51282586-51282605 MS.gene05651:intron 40.0%
GTTCAGATTACCAGATGAAG+AGG + chr3.2:51283381-51283400 MS.gene05651:intron 40.0%
TAATCCAGCTTCACATACGT+CGG + chr3.2:51281271-51281290 MS.gene05651:CDS 40.0%
TAGGAACAAAGGGAAAGTAG+TGG + chr3.2:51281777-51281796 MS.gene05651:CDS 40.0%
TCAAAACAACACTTGCAGCT+GGG - chr3.2:51283417-51283436 None:intergenic 40.0%
TCATCTCCTAGGACTATCAA+AGG - chr3.2:51281469-51281488 None:intergenic 40.0%
TGGAACAAACTTCTTGAAGC+CGG + chr3.2:51281511-51281530 MS.gene05651:CDS 40.0%
TGGTGATAAGGTTGCATTTG+TGG + chr3.2:51281064-51281083 MS.gene05651:CDS 40.0%
TTGTGTTACACCAAAGAGTG+TGG - chr3.2:51281674-51281693 None:intergenic 40.0%
! AGGTCTCTTGGTTTGAGAAA+AGG + chr3.2:51281158-51281177 MS.gene05651:CDS 40.0%
! GGTCTCTTGGTTTGAGAAAA+GGG + chr3.2:51281159-51281178 MS.gene05651:CDS 40.0%
! TCCGGCAATGTTACATTTTC+AGG - chr3.2:51281017-51281036 None:intergenic 40.0%
!! TCAAAGGCTTTAAGGTCTCT+TGG + chr3.2:51281146-51281165 MS.gene05651:CDS 40.0%
!!! GCAAGTGTTGTTTTGAGCAA+AGG + chr3.2:51283421-51283440 MS.gene05651:CDS 40.0%
!!! GCATTTTGGAGCACAAATTC+CGG - chr3.2:51281035-51281054 None:intergenic 40.0%
!!! TACATTTTCAGGTACCGGAA+CGG - chr3.2:51281006-51281025 None:intergenic 40.0%
AACAGCTGCATCTTCAACTG+AGG - chr3.2:51283105-51283124 None:intergenic 45.0%
AGATTACCAGATGAAGAGGC+AGG + chr3.2:51283385-51283404 MS.gene05651:intron 45.0%
AGGCACAACAGGAATGTCAA+AGG + chr3.2:51281606-51281625 MS.gene05651:CDS 45.0%
AGTGAGAGTGGTTCACTTTG+TGG + chr3.2:51283507-51283526 MS.gene05651:CDS 45.0%
ATGACAACAACTTTGCGCCA+AGG - chr3.2:51282171-51282190 None:intergenic 45.0%
ATTACCAGATGAAGAGGCAG+GGG + chr3.2:51283387-51283406 MS.gene05651:CDS 45.0%
ATTTCCGACGTATGTGAAGC+TGG - chr3.2:51281278-51281297 None:intergenic 45.0%
CAAAGGGAAAGTAGTGGTGA+TGG + chr3.2:51281783-51281802 MS.gene05651:CDS 45.0%
CCTGTTGTGCCTGATGAAAA+TGG - chr3.2:51281598-51281617 None:intergenic 45.0%
CTCAAAACAACACTTGCAGC+TGG - chr3.2:51283418-51283437 None:intergenic 45.0%
GATTACCAGATGAAGAGGCA+GGG + chr3.2:51283386-51283405 MS.gene05651:intron 45.0%
GCTTGTCAAAGAGAAGATGG+TGG + chr3.2:51283570-51283589 MS.gene05651:CDS 45.0%
GGCACAACAGGAATGTCAAA+GGG + chr3.2:51281607-51281626 MS.gene05651:CDS 45.0%
GGCAGGGAATGATTCAATGA+AGG + chr3.2:51281540-51281559 MS.gene05651:CDS 45.0%
GTGAGTAATTCAGGTGCAAG+TGG - chr3.2:51281970-51281989 None:intergenic 45.0%
TCATTGAATCATTCCCTGCC+CGG - chr3.2:51281540-51281559 None:intergenic 45.0%
TGTGCCTGATGAAAATGGCA+TGG - chr3.2:51281593-51281612 None:intergenic 45.0%
! CCATTTTCATCAGGCACAAC+AGG + chr3.2:51281595-51281614 MS.gene05651:CDS 45.0%
! GCATGGCACAAAGGTCATTT+TGG - chr3.2:51281576-51281595 None:intergenic 45.0%
!! GTGGTTAATTTGTTAGGGGG+AGG + chr3.2:51282570-51282589 MS.gene05651:intron 45.0%
!!! ACATTTTCAGGTACCGGAAC+GGG - chr3.2:51281005-51281024 None:intergenic 45.0%
!!! TGTGCCATGCCATTTTCATC+AGG + chr3.2:51281586-51281605 MS.gene05651:CDS 45.0%
AAACAGGAAGATCCCTCCCA+AGG + chr3.2:51282448-51282467 MS.gene05651:CDS 50.0%
AACTTCTTGAAGCCGGAGAC+CGG + chr3.2:51281518-51281537 MS.gene05651:CDS 50.0%
AAGGTCACGGGTTCAAGTCT+TGG + chr3.2:51282201-51282220 MS.gene05651:intron 50.0%
ACCTCTTGGACAAGAACACC+AGG - chr3.2:51282012-51282031 None:intergenic 50.0%
ATTTCCCCTGCCTCTTCATC+TGG - chr3.2:51283394-51283413 None:intergenic 50.0%
CTGCAGCAGTCATAATGGCT+TGG - chr3.2:51281945-51281964 None:intergenic 50.0%
CTTCTCACACAAAGTTCCCC+TGG - chr3.2:51282480-51282499 None:intergenic 50.0%
GCATTTGTGGATGCTGAGAG+TGG + chr3.2:51281077-51281096 MS.gene05651:CDS 50.0%
GTGGATGCTGAGAGTGGAAA+AGG + chr3.2:51281083-51281102 MS.gene05651:CDS 50.0%
TAGCCAATATTCGCCCGTTC+CGG + chr3.2:51280989-51281008 MS.gene05651:CDS 50.0%
TCCTGGTGTTCTTGTCCAAG+AGG + chr3.2:51282008-51282027 MS.gene05651:CDS 50.0%
TGGCTTCACACTGGTGACAT+TGG + chr3.2:51282741-51282760 MS.gene05651:CDS 50.0%
TGGGAGGGATCTTCCTGTTT+CGG - chr3.2:51282448-51282467 None:intergenic 50.0%
! GATGCTGGTTGTGTGTTCTC+AGG + chr3.2:51281245-51281264 MS.gene05651:CDS 50.0%
! GGGCTACCTTTGATAGTCCT+AGG + chr3.2:51281460-51281479 MS.gene05651:CDS 50.0%
!! GCTTTGGGAATCATGGATGC+TGG + chr3.2:51281230-51281249 MS.gene05651:CDS 50.0%
!! TGGTGCTGCAGCAGTCATAA+TGG - chr3.2:51281950-51281969 None:intergenic 50.0%
!! TGTTTCTGGAGGGGTAACCT+TGG + chr3.2:51282151-51282170 MS.gene05651:intron 50.0%
ACTTCTTGAAGCCGGAGACC+GGG + chr3.2:51281519-51281538 MS.gene05651:CDS 55.0%
AGTTCCCCTGGTGTGTTCCT+TGG - chr3.2:51282468-51282487 None:intergenic 55.0%
GGGAGGGATCTTCCTGTTTC+GGG - chr3.2:51282447-51282466 None:intergenic 55.0%
GGTTGCTCCTGCAGAGTTAG+AGG + chr3.2:51283061-51283080 MS.gene05651:intron 55.0%
GTACCGGAACGGGCGAATAT+TGG - chr3.2:51280995-51281014 None:intergenic 55.0%
GTTCCCCTGGTGTGTTCCTT+GGG - chr3.2:51282467-51282486 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+GGG + chr3.2:51282248-51282267 MS.gene05651:intron 55.0%
! CATGCGGGAGCTTTAGTGCA+CGG + chr3.2:51282247-51282266 MS.gene05651:intron 55.0%
ACTAAAGCTCCCGCATGCGC+AGG - chr3.2:51282244-51282263 None:intergenic 60.0%
ATCATTCCCTGCCCGGTCTC+CGG - chr3.2:51281533-51281552 None:intergenic 60.0%
CCCTCCCAAGGAACACACCA+GGG + chr3.2:51282460-51282479 MS.gene05651:CDS 60.0%
CCCTGGTGTGTTCCTTGGGA+GGG - chr3.2:51282463-51282482 None:intergenic 60.0%
CCTCCCAAGGAACACACCAG+GGG + chr3.2:51282461-51282480 MS.gene05651:CDS 60.0%
CTAAAGCTCCCGCATGCGCA+GGG - chr3.2:51282243-51282262 None:intergenic 60.0%
TCCCTCCCAAGGAACACACC+AGG + chr3.2:51282459-51282478 MS.gene05651:CDS 60.0%
CCCCTGGTGTGTTCCTTGGG+AGG - chr3.2:51282464-51282483 None:intergenic 65.0%
CTTCACGGACCCTGCGCATG+CGG + chr3.2:51282231-51282250 MS.gene05651:intron 65.0%
GTGCGCACGCGCGCGAAAAT+AGG + chr3.2:51282916-51282935 MS.gene05651:intron 65.0%
TTCACGGACCCTGCGCATGC+GGG + chr3.2:51282232-51282251 MS.gene05651:intron 65.0%
TTGAAGCCGGAGACCGGGCA+GGG + chr3.2:51281524-51281543 MS.gene05651:CDS 65.0%
CGCATGCGCAGGGTCCGTGA+AGG - chr3.2:51282233-51282252 None:intergenic 70.0%
CTTGAAGCCGGAGACCGGGC+AGG + chr3.2:51281523-51281542 MS.gene05651:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 51280939 51283639 51280939 ID=MS.gene05651
chr3.2 mRNA 51280939 51283639 51280939 ID=MS.gene05651.t1;Parent=MS.gene05651
chr3.2 exon 51280939 51281361 51280939 ID=MS.gene05651.t1.exon1;Parent=MS.gene05651.t1
chr3.2 CDS 51280939 51281361 51280939 ID=cds.MS.gene05651.t1;Parent=MS.gene05651.t1
chr3.2 exon 51281448 51282029 51281448 ID=MS.gene05651.t1.exon2;Parent=MS.gene05651.t1
chr3.2 CDS 51281448 51282029 51281448 ID=cds.MS.gene05651.t1;Parent=MS.gene05651.t1
chr3.2 exon 51282324 51282516 51282324 ID=MS.gene05651.t1.exon3;Parent=MS.gene05651.t1
chr3.2 CDS 51282324 51282516 51282324 ID=cds.MS.gene05651.t1;Parent=MS.gene05651.t1
chr3.2 exon 51282691 51282836 51282691 ID=MS.gene05651.t1.exon4;Parent=MS.gene05651.t1
chr3.2 CDS 51282691 51282836 51282691 ID=cds.MS.gene05651.t1;Parent=MS.gene05651.t1
chr3.2 exon 51283062 51283129 51283062 ID=MS.gene05651.t1.exon5;Parent=MS.gene05651.t1
chr3.2 CDS 51283062 51283129 51283062 ID=cds.MS.gene05651.t1;Parent=MS.gene05651.t1
chr3.2 exon 51283387 51283639 51283387 ID=MS.gene05651.t1.exon6;Parent=MS.gene05651.t1
chr3.2 CDS 51283387 51283639 51283387 ID=cds.MS.gene05651.t1;Parent=MS.gene05651.t1
Gene Sequence

>MS.gene05651

ATGGGAGCCTACATAGAAAATTTTGTAGAAGAGAATGAACATATTTTTCGTAGCCAATATTCGCCCGTTCCGGTACCTGAAAATGTAACATTGCCGGAATTTGTGCTCCAAAATGCTGAACTATATGGTGATAAGGTTGCATTTGTGGATGCTGAGAGTGGAAAAGGAGTAACTTATAGTGAGGTTGTGAGGGATATACATAGATTTTCAAAGGCTTTAAGGTCTCTTGGTTTGAGAAAAGGGAATGTTGTGATTGTTGTACTTCCAAATATTGTAGAGTATGCCATTATTGCTTTGGGAATCATGGATGCTGGTTGTGTGTTCTCAGGAGCTAATCCAGCTTCACATACGTCGGAAATTAAGAAACAAGTTGAGTCTGCTGATGCCAAATTAATTGTCACAAATAGCTCAAGCCATGAAAAGGTAACTCCTTCAAAAATGATGATGAATCATGTTTTTTCTTATATGCCTTTTTATATACTCTTTGATTTGATACAGTGTTGATACAGGTGAAAAGTCTAGGGCTACCTTTGATAGTCCTAGGAGATGAACTTGTTGAAGATGCTATGAACTGGAACAAACTTCTTGAAGCCGGAGACCGGGCAGGGAATGATTCAATGAAGGAACCAATTCACCAAAATGACCTTTGTGCCATGCCATTTTCATCAGGCACAACAGGAATGTCAAAGGGTGTGATGCTTACACACAGAAACCTAGTAGCAAATCTTTGTTCCACACTCTTTGGTGTAACACAAGAAATGATTGGAAAAGTCACTACATTAGGGTTAATTCCATTTTTTCACATTTATGGCATCACTGGAATATGTTGTGCAACTATTAGGAACAAAGGGAAAGTAGTGGTGATGGGAAAATATGATTTGAAAACATTTTTGAATGCCTTGATTACACATGAAGTCACATTTGCACCTATTGTTCCACCTATTATTCTTGGATTGGTTAAAAATCCTATAGTTGATCAATTTGATCTTAGCAAGCTTAAACTCCAAGCCATTATGACTGCTGCAGCACCACTTGCACCTGAATTACTCACTTCCTTTGAACATAAGTTTCCTGGTGTTCTTGTCCAAGAGGTTATCACTTTCATCCTTCAAAACTATTGTTAGTTCAATTAAAGACTTTTTAGGGTTTGTGGAAATATTTTCTTAAACTATTAGATAGTTAAAGACTTTTTTAGATATTTTTTATAGTATGTGTTTCTGGAGGGGTAACCTTGGCGCAAAGTTGTTGTCATGTGATTGAAAAAGGTCACGGGTTCAAGTCTTGGAAACAACCTTCACGGACCCTGCGCATGCGGGAGCTTTAGTGCACGGGATTGCCCTTTGCCCTTTTATGTGTTTCTAAAGTGCTAGTTTTTTCTTTTGCAGGCATATGGACTAACTGAACATAGCTGCATTACACTTACATATGCACAAAAATTATCCGGAAGTACACATAAAAATTCGGTTGGTTTCATCCTTCCAAATTTGGAAGTCAAGTTTATTGATCCCGAAACAGGAAGATCCCTCCCAAGGAACACACCAGGGGAACTTTGTGTGAGAAGCCAATGTGTAATGCAAGGTAATCTATGAGTAAAATTATTTATGATAATATATTTTTTTAGACAAATGTTAGTGGTTAATTTGTTAGGGGGAGGCGAAAATTATTAACGGCAATACTACTGGACTACACCTTCGGAGACTTATGATAAAATTATATGATAAATGTACTATAAACTCTTTTTGTTTTTACTAGGTTATTATAAACAAGTGGATGAGACTGCTCAGACTATTGACAAAAATGGATGGCTTCACACTGGTGACATTGGATTCATAGATGATGAAGAAAATGTCTTTATTGTTGATCGTATTAAGGAGTTGATTAAATACAAAGGCTTCCAAGTAAGTTCTTGATGTTACATGTTTATTGTTACATGGAATAAAACATTATTTGTGGAACATAATTGCAAGGTCTTAGTGTGTGCGCACGCGCGCGAAAATAGGAGAAATCTAATTTGTAATGCAAGTTCTGTTTTGCAGTTTATTAATATGCATCTATAAGTCTAAGGAATCTTCTTCCCAAGTATAGGCTAAAATTAGTTTATGTGTATTCTTTTTTGAATGCAGGTTGCTCCTGCAGAGTTAGAGGCTATTTTGCTGTCTCATTCCTCAGTTGAAGATGCAGCTGTTGTACCGTAAGTAACCGCGACGATAATTTTTGTCATTCTTTTTAATATTACCTTTTCATTGGGATTTAAGATTGAGTTTAATTTTAATATACCGGCAGTGTAAAAGGTTCAATATATCCACAGATCACAACCAATCATATGTGTAAATTTAGAAATAGTTACGAATAAAATCAAACAGTTTTAATAGATAGTCTATACGAATTAAATCTTATAAGATTTAAACTATTTACAATATTTTGTTGTTTTGTGCAATGATTGTTCAGATTACCAGATGAAGAGGCAGGGGAAATCCCAGCTGCAAGTGTTGTTTTGAGCAAAGGTGCAAAAGAGAGTGAAGAAGATATTATGAACTATGTTGCTTCCAATGCTGCTCATTACAAGAAAGTGAGAGTGGTTCACTTTGTGGAAGCTATACCAAAATCACCTTCTGGTAAAATAATGAGAAGGCTTGTCAAAGAGAAGATGGTGGAAAAGATTAAGGAAAATAATTCCCTAACAAAGTCTAAGAATTTTTAA
Protein sequence

>MS.gene05651.t1

MGAYIENFVEENEHIFRSQYSPVPVPENVTLPEFVLQNAELYGDKVAFVDAESGKGVTYSEVVRDIHRFSKALRSLGLRKGNVVIVVLPNIVEYAIIALGIMDAGCVFSGANPASHTSEIKKQVESADAKLIVTNSSSHEKVKSLGLPLIVLGDELVEDAMNWNKLLEAGDRAGNDSMKEPIHQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFGVTQEMIGKVTTLGLIPFFHIYGITGICCATIRNKGKVVVMGKYDLKTFLNALITHEVTFAPIVPPIILGLVKNPIVDQFDLSKLKLQAIMTAAAPLAPELLTSFEHKFPGVLVQEAYGLTEHSCITLTYAQKLSGSTHKNSVGFILPNLEVKFIDPETGRSLPRNTPGELCVRSQCVMQGYYKQVDETAQTIDKNGWLHTGDIGFIDDEENVFIVDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEEAGEIPAASVVLSKGAKESEEDIMNYVASNAAHYKKVRVVHFVEAIPKSPSGKIMRRLVKEKMVEKIKENNSLTKSKNF