AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067380.t1 MTR_5g027480 93.333 555 37 0 1 555 1 555 0.0 1058
MS.gene067380.t1 MTR_5g027500 79.754 568 102 2 1 555 1 568 0.0 889
MS.gene067380.t1 MTR_4g077900 80.544 478 91 1 80 555 1 478 0.0 785
MS.gene067380.t1 MTR_1g026310 44.790 547 289 5 18 555 18 560 3.27e-157 461
MS.gene067380.t1 MTR_8g039720 44.268 567 292 9 5 555 1 559 5.11e-154 452
MS.gene067380.t1 MTR_1g090737 44.669 544 277 10 18 547 25 558 1.09e-143 426
MS.gene067380.t1 MTR_4g057730 42.486 539 293 9 18 547 4 534 2.80e-139 414
MS.gene067380.t1 MTR_2g095510 40.706 538 304 7 25 555 10 539 2.15e-136 407
MS.gene067380.t1 MTR_3g088870 41.734 496 271 7 58 547 67 550 3.45e-129 389
MS.gene067380.t1 MTR_1g063120 39.162 549 303 10 20 547 6 544 9.09e-128 385
MS.gene067380.t1 MTR_3g088880 41.379 493 274 7 58 547 68 548 3.92e-126 381
MS.gene067380.t1 MTR_1g063110 38.899 545 310 8 18 547 4 540 4.55e-126 380
MS.gene067380.t1 MTR_4g057730 41.983 474 258 9 18 482 4 469 1.01e-113 346
MS.gene067380.t1 MTR_1g073180 39.147 516 289 9 42 549 30 528 3.26e-109 337
MS.gene067380.t1 MTR_4g128337 39.200 500 286 10 58 547 49 540 1.13e-107 333
MS.gene067380.t1 MTR_2g105570 40.239 502 286 8 58 548 44 542 2.21e-107 332
MS.gene067380.t1 MTR_4g057730 41.410 454 249 9 18 462 4 449 2.84e-105 324
MS.gene067380.t1 MTR_4g005750 41.517 501 275 11 58 548 43 535 5.83e-103 321
MS.gene067380.t1 MTR_5g007640 38.659 507 292 7 58 553 87 585 8.01e-102 319
MS.gene067380.t1 MTR_2g095510 39.326 445 255 7 25 462 10 446 2.85e-101 313
MS.gene067380.t1 MTR_3g460770 34.495 545 325 8 26 555 14 541 9.84e-101 315
MS.gene067380.t1 MTR_1g073180 37.827 497 284 9 42 530 52 531 1.03e-97 307
MS.gene067380.t1 MTR_1g026470 38.660 388 225 5 18 396 18 401 2.79e-79 255
MS.gene067380.t1 MTR_1g026430 38.660 388 225 5 18 396 18 401 5.53e-79 254
MS.gene067380.t1 MTR_3g035130 30.738 488 314 12 68 545 32 505 1.04e-52 187
MS.gene067380.t1 MTR_5g076240 28.435 524 316 17 66 549 38 542 1.06e-43 164
MS.gene067380.t1 MTR_1569s0010 25.912 521 334 11 68 549 22 529 2.17e-42 159
MS.gene067380.t1 MTR_3g035130 30.543 442 283 12 68 499 32 459 1.24e-41 156
MS.gene067380.t1 MTR_4g011790 26.096 479 309 11 109 554 132 598 5.77e-38 148
MS.gene067380.t1 MTR_0803s0020 27.183 504 303 12 70 541 263 734 1.40e-37 149
MS.gene067380.t1 MTR_5g076220 29.134 381 218 12 196 548 186 542 1.77e-36 143
MS.gene067380.t1 MTR_4g011790 25.820 488 308 13 109 554 132 607 3.02e-36 143
MS.gene067380.t1 MTR_2g030240 26.433 541 318 14 71 555 31 547 3.04e-36 142
MS.gene067380.t1 MTR_5g008800 28.713 505 325 15 69 549 41 534 5.33e-35 139
MS.gene067380.t1 MTR_4g011790 27.649 387 243 9 182 542 211 586 1.08e-34 139
MS.gene067380.t1 MTR_4g013210 27.970 404 248 12 182 554 54 445 4.62e-34 134
MS.gene067380.t1 MTR_3g064420 25.996 527 333 17 64 548 36 547 6.30e-34 136
MS.gene067380.t1 MTR_2g044180 30.137 365 228 12 201 548 107 461 1.05e-33 134
MS.gene067380.t1 MTR_0161s0050 28.191 376 228 12 196 548 188 544 1.30e-33 135
MS.gene067380.t1 MTR_2g044180 29.730 370 233 12 196 548 193 552 2.01e-33 134
MS.gene067380.t1 MTR_5g008820 27.220 518 312 18 69 548 41 531 3.19e-33 134
MS.gene067380.t1 MTR_8g074040 27.701 509 303 20 80 548 94 577 1.41e-32 132
MS.gene067380.t1 MTR_4g121600 25.430 523 330 16 69 548 47 552 4.26e-32 130
MS.gene067380.t1 MTR_8g074040 29.351 385 229 14 185 549 99 460 7.20e-32 129
MS.gene067380.t1 MTR_5g076200 28.084 381 222 13 196 548 186 542 1.56e-31 129
MS.gene067380.t1 MTR_8g074120 29.491 373 222 13 198 549 137 489 3.78e-30 124
MS.gene067380.t1 MTR_2g030240 27.889 398 232 10 197 555 72 453 4.22e-30 123
MS.gene067380.t1 MTR_4g013210 27.132 387 232 11 182 554 54 404 1.80e-28 117
MS.gene067380.t1 MTR_4g013210 27.132 387 232 11 182 554 206 556 7.43e-28 118
MS.gene067380.t1 MTR_1g026350 41.176 136 80 0 18 153 18 153 9.03e-28 109
MS.gene067380.t1 MTR_5g023730 26.692 517 325 19 69 553 48 542 1.20e-27 117
MS.gene067380.t1 MTR_7g084850 24.329 596 383 19 6 555 151 724 1.60e-27 117
MS.gene067380.t1 MTR_4g013210 27.882 373 226 12 182 523 206 566 1.16e-26 114
MS.gene067380.t1 MTR_1g104810 25.621 523 305 16 23 472 57 568 4.74e-23 103
MS.gene067380.t1 MTR_4g057755 55.556 72 32 0 411 482 46 117 5.65e-22 92.0
MS.gene067380.t1 MTR_3g087980 25.103 486 274 16 68 475 106 579 1.11e-21 99.8
MS.gene067380.t1 MTR_1g104810 28.704 324 174 10 195 472 189 501 1.22e-21 99.4
MS.gene067380.t1 MTR_1g030290 27.557 352 171 15 198 480 250 586 1.77e-21 99.0
MS.gene067380.t1 MTR_1054s0020 24.930 357 243 11 200 549 432 770 3.58e-19 92.0
MS.gene067380.t1 MTR_7g109830 24.008 529 306 18 37 484 36 549 9.27e-19 90.5
MS.gene067380.t1 MTR_8g099420 26.316 399 214 15 140 484 180 552 9.82e-19 90.5
MS.gene067380.t1 MTR_1g086600 22.570 607 367 19 26 551 46 630 8.15e-18 87.4
MS.gene067380.t1 MTR_2g098490 26.382 398 233 17 198 544 647 1035 1.22e-16 84.3
MS.gene067380.t1 MTR_4g066130 26.000 400 233 18 197 544 650 1038 1.68e-16 84.0
MS.gene067380.t1 MTR_8g083170 30.631 222 132 7 324 532 459 671 3.39e-16 82.4
MS.gene067380.t1 MTR_3g088890 50.000 64 32 0 457 520 10 73 1.11e-14 70.1
MS.gene067380.t1 MTR_3g084470 31.222 221 121 7 296 495 418 628 2.05e-14 76.6
MS.gene067380.t1 MTR_3g084450 31.313 198 113 7 315 495 233 424 4.96e-14 75.1
MS.gene067380.t1 MTR_3g084450 31.313 198 113 7 315 495 441 632 1.77e-13 73.9
MS.gene067380.t1 MTR_4g013210 27.481 262 158 10 182 423 206 455 6.07e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067380.t1 AT4G19010 58.867 547 220 3 10 551 12 558 0.0 652
MS.gene067380.t1 AT1G20510 44.177 541 289 5 13 547 3 536 5.50e-162 473
MS.gene067380.t1 AT1G20480 42.857 553 297 6 14 555 21 565 1.43e-151 446
MS.gene067380.t1 AT1G20500 42.413 547 296 7 18 555 14 550 7.11e-147 434
MS.gene067380.t1 AT4G05160 40.700 543 306 6 23 555 8 544 9.39e-140 416
MS.gene067380.t1 AT5G38120 41.591 553 293 10 12 547 3 542 4.21e-137 409
MS.gene067380.t1 AT5G63380 40.801 549 301 7 14 547 11 550 4.62e-137 409
MS.gene067380.t1 AT1G20510 42.857 476 259 5 13 482 3 471 1.52e-134 400
MS.gene067380.t1 AT1G20510 41.886 456 252 5 13 462 3 451 1.11e-123 372
MS.gene067380.t1 AT5G38120 40.571 525 282 10 12 519 3 514 4.35e-123 372
MS.gene067380.t1 AT3G21240 41.502 506 283 8 58 555 54 554 1.17e-112 346
MS.gene067380.t1 AT5G38120 40.164 488 262 10 12 482 3 477 5.04e-111 340
MS.gene067380.t1 AT5G38120 40.164 488 262 10 12 482 3 477 5.04e-111 340
MS.gene067380.t1 AT1G51680 42.633 509 278 8 58 555 56 561 2.52e-110 340
MS.gene067380.t1 AT1G65060 41.331 496 282 7 58 548 66 557 3.02e-110 340
MS.gene067380.t1 AT3G21230 39.279 527 304 9 40 553 43 566 6.00e-105 327
MS.gene067380.t1 AT1G62940 36.989 538 310 10 26 549 12 534 2.52e-98 309
MS.gene067380.t1 AT1G51680 42.283 473 259 8 58 519 56 525 2.75e-98 308
MS.gene067380.t1 AT3G21230 38.945 493 285 9 40 519 43 532 2.26e-93 296
MS.gene067380.t1 AT1G20490 38.208 424 243 7 18 431 14 428 1.93e-89 283
MS.gene067380.t1 AT1G20490 38.208 424 243 7 18 431 14 428 1.93e-89 283
MS.gene067380.t1 AT3G21240 40.000 435 248 8 58 484 54 483 3.79e-87 278
MS.gene067380.t1 AT3G21240 40.000 435 248 8 58 484 54 483 3.79e-87 278
MS.gene067380.t1 AT1G51680 40.639 438 246 8 58 484 56 490 4.01e-84 270
MS.gene067380.t1 AT3G21230 37.939 456 267 9 40 482 43 495 7.53e-81 262
MS.gene067380.t1 AT1G65060 39.078 412 242 7 58 464 66 473 6.12e-78 254
MS.gene067380.t1 AT3G48990 29.158 487 325 12 67 545 30 504 1.70e-48 176
MS.gene067380.t1 AT3G21230 33.333 387 242 9 40 413 43 426 2.30e-45 166
MS.gene067380.t1 AT1G77240 33.777 376 219 14 195 552 182 545 1.32e-41 157
MS.gene067380.t1 AT1G21530 27.190 548 337 21 41 549 19 543 2.19e-40 154
MS.gene067380.t1 AT1G21530 27.106 546 338 21 41 549 19 541 3.26e-39 151
MS.gene067380.t1 AT5G16370 27.237 503 317 14 80 549 53 539 6.40e-39 150
MS.gene067380.t1 AT1G30520 27.841 528 304 17 77 549 42 547 7.90e-39 150
MS.gene067380.t1 AT1G30520 27.841 528 304 17 77 549 42 547 7.90e-39 150
MS.gene067380.t1 AT1G21540 27.419 558 333 23 41 552 19 550 1.03e-38 149
MS.gene067380.t1 AT1G65890 26.316 532 325 18 66 549 38 550 8.99e-38 147
MS.gene067380.t1 AT1G65880 26.996 526 330 17 66 549 38 551 1.53e-36 144
MS.gene067380.t1 AT1G66120 27.238 525 322 18 66 549 38 543 9.26e-35 138
MS.gene067380.t1 AT5G16340 27.273 506 313 19 80 549 53 539 3.02e-34 137
MS.gene067380.t1 AT1G75960 30.189 371 226 13 196 548 183 538 4.41e-34 136
MS.gene067380.t1 AT3G16910 28.756 386 248 11 181 549 181 556 2.78e-32 131
MS.gene067380.t1 AT1G20560 27.470 506 312 16 80 549 54 540 1.59e-31 129
MS.gene067380.t1 AT1G20560 30.707 368 224 12 198 549 110 462 1.28e-30 125
MS.gene067380.t1 AT3G16170 24.846 487 299 16 109 554 147 607 2.25e-30 125
MS.gene067380.t1 AT5G36880 25.142 529 350 13 67 555 197 719 3.18e-30 126
MS.gene067380.t1 AT5G36880 25.142 529 350 13 67 555 147 669 3.30e-30 125
MS.gene067380.t1 AT5G36880 25.142 529 350 13 67 555 147 669 3.30e-30 125
MS.gene067380.t1 AT5G36880 25.142 529 350 13 67 555 147 669 3.30e-30 125
MS.gene067380.t1 AT5G36880 25.142 529 350 13 67 555 147 669 3.30e-30 125
MS.gene067380.t1 AT1G30520 26.531 441 270 14 77 482 42 463 3.89e-30 124
MS.gene067380.t1 AT1G30520 26.531 441 270 14 77 482 42 463 3.89e-30 124
MS.gene067380.t1 AT1G76290 26.946 501 315 17 80 549 52 532 4.24e-30 124
MS.gene067380.t1 AT2G17650 27.793 367 241 11 196 549 240 595 1.15e-27 117
MS.gene067380.t1 AT5G27600 27.186 526 289 17 23 470 60 569 2.33e-26 114
MS.gene067380.t1 AT1G68270 24.340 530 306 19 66 548 38 519 1.33e-25 111
MS.gene067380.t1 AT5G36880 25.054 459 301 13 67 488 147 599 1.97e-23 104
MS.gene067380.t1 AT1G49430 25.617 527 301 22 36 484 40 553 4.67e-23 103
MS.gene067380.t1 AT1G64400 24.565 517 295 19 21 456 21 523 2.51e-22 101
MS.gene067380.t1 AT1G77590 24.385 488 286 15 68 482 107 584 1.12e-20 96.7
MS.gene067380.t1 AT3G05970 24.906 530 290 16 26 470 63 569 3.34e-20 95.1
MS.gene067380.t1 AT1G77590 26.801 347 184 12 198 482 100 438 1.41e-19 92.8
MS.gene067380.t1 AT4G11030 26.579 380 209 14 140 470 180 538 5.42e-19 91.3
MS.gene067380.t1 AT3G23790 29.651 172 103 5 335 493 465 631 3.29e-12 69.7
MS.gene067380.t1 AT2G47240 31.548 168 109 5 320 484 326 490 2.15e-11 67.0
MS.gene067380.t1 AT2G47240 31.548 168 109 5 320 484 385 549 2.27e-11 67.0
MS.gene067380.t1 AT2G47240 31.548 168 109 5 320 484 385 549 2.27e-11 67.0
MS.gene067380.t1 AT2G47240 31.548 168 109 5 320 484 385 549 2.27e-11 67.0

Find 119 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTCTGGTCTTCATAAAA+TGG 0.204210 5.2:-18237469 MS.gene067380:CDS
ATGGGATAGTAAATTGAATT+TGG 0.204514 5.2:+18237411 None:intergenic
TTGACATTGATGAGACTATT+AGG 0.209216 5.2:-18236876 MS.gene067380:CDS
TATCAAATACAAGGGCTTTC+AGG 0.229499 5.2:-18235971 MS.gene067380:intron
TATTGCTATGGTTGAGCTTT+TGG 0.241203 5.2:-18237043 MS.gene067380:CDS
TACTATCCCATTGTACTATT+AGG 0.254485 5.2:-18237399 MS.gene067380:CDS
TTGCCGATGTTCCATTTATA+TGG 0.273927 5.2:-18236961 MS.gene067380:CDS
ATAGTGGATGTCGCCGTTAC+AGG 0.280831 5.2:-18235785 MS.gene067380:CDS
AGAGAGATAAACCATATAAA+TGG 0.302429 5.2:+18236950 None:intergenic
ACCTGTATAAAATCAACATT+AGG 0.307157 5.2:+18236682 None:intergenic
GCCCTTATTGATTCCTCATC+TGG 0.313200 5.2:-18237537 MS.gene067380:CDS
ATACCATCACTCACCCTTCT+TGG 0.316236 5.2:-18237674 MS.gene067380:CDS
GCGAAGGCAAAGGGTGTAAA+TGG 0.324668 5.2:-18236790 MS.gene067380:CDS
TTAGTCAAATCAATGGCTTC+TGG 0.343881 5.2:-18237483 MS.gene067380:CDS
GAAATGCCTTAGAGTTTAGA+AGG 0.348615 5.2:+18235357 None:intergenic
AGCAGTTTCTGAGTTGCTTT+CGG 0.356180 5.2:+18235382 None:intergenic
TGCTACGGGATTATTGTCAT+TGG 0.367115 5.2:-18236926 MS.gene067380:CDS
ACGGCGACATCCACTATTTC+AGG 0.369334 5.2:+18235791 None:intergenic
ATGACTGAGTCGGGTGCATT+AGG 0.374967 5.2:-18236531 MS.gene067380:CDS
CTCCCCAGCTTCTTCATCCT+TGG 0.375919 5.2:+18235671 None:intergenic
CAGGCAGAAGTGGTGAGCTT+TGG 0.376467 5.2:-18236398 MS.gene067380:CDS
ACTTTGCGAACCTTCTTGAA+TGG 0.377094 5.2:+18235450 None:intergenic
TGACATTGATGAGACTATTA+GGG 0.379738 5.2:-18236875 MS.gene067380:CDS
TTCCAGATGAGGAATCAATA+AGG 0.379840 5.2:+18237535 None:intergenic
TGCTTGCCTTCTAAACTCTA+AGG 0.391570 5.2:-18235363 None:intergenic
GGAGATTCCAGTGGCATTTG+TGG 0.394931 5.2:-18235652 MS.gene067380:CDS
GTGTAAACTATTGTAAATTC+CGG 0.407631 5.2:+18237638 None:intergenic
GCTACGGGATTATTGTCATT+GGG 0.419178 5.2:-18236925 MS.gene067380:CDS
ACAAAATCGATAACATCCTT+TGG 0.419496 5.2:+18235603 None:intergenic
AACGATACAACATCGAGAAA+AGG 0.426403 5.2:+18237591 None:intergenic
AAACAAAGTTACCAGAAATC+AGG 0.431755 5.2:+18237169 None:intergenic
TAACAACTTTGAGTAAGAAA+TGG 0.436153 5.2:+18237509 None:intergenic
TGGAGGCAAAAGTGGTAGAT+TGG 0.438591 5.2:-18236443 MS.gene067380:CDS
AAAGATGGTTGGCTACATAC+TGG 0.442873 5.2:-18236054 MS.gene067380:CDS
GCTGTCAATGCCGACAATAT+CGG 0.443469 5.2:+18236811 None:intergenic
GAAGCCATTGATTTGACTAA+AGG 0.445775 5.2:+18237486 None:intergenic
CAAAGCTCACCACTTCTGCC+TGG 0.447396 5.2:+18236399 None:intergenic
TTTCGCAACTATTCCTCACT+AGG 0.455586 5.2:-18236483 MS.gene067380:CDS
TCTTGTTCCACCGATATTGT+CGG 0.455719 5.2:-18236821 MS.gene067380:CDS
GTTACCTTTAGTCAAATCAA+TGG 0.458910 5.2:-18237490 MS.gene067380:CDS
AAAGCTCACCACTTCTGCCT+GGG 0.459009 5.2:+18236400 None:intergenic
ACAATAGTTTACACTCTCCT+AGG 0.461678 5.2:-18237629 MS.gene067380:CDS
CCTGTATAAAATCAACATTA+GGG 0.467794 5.2:+18236683 None:intergenic
TTCTGTGCCAGAAAATGAAA+AGG 0.468038 5.2:-18237226 MS.gene067380:CDS
GCTTCTGGTCTTCATAAAAT+GGG 0.474868 5.2:-18237468 MS.gene067380:CDS
AATCAACATTAGGGAGAGCT+TGG 0.474883 5.2:+18236692 None:intergenic
GGTTTATCTCTCTATGCTAC+GGG 0.475242 5.2:-18236940 MS.gene067380:CDS
ATAACACCTAATAGTACAAT+GGG 0.478275 5.2:+18237393 None:intergenic
TCCAGATGAGGAATCAATAA+GGG 0.481082 5.2:+18237536 None:intergenic
TCATAGAAATCTTATTGCTA+TGG 0.487900 5.2:-18237055 MS.gene067380:CDS
CTTAGGATACTTGAATAATG+AGG 0.494593 5.2:-18236100 MS.gene067380:intron
ATTTCATCAACACTACTAAG+AGG 0.496577 5.2:+18237339 None:intergenic
GAAAGAATTTATCAAATACA+AGG 0.497893 5.2:-18235980 MS.gene067380:CDS
TGGTTTATCTCTCTATGCTA+CGG 0.498187 5.2:-18236941 MS.gene067380:CDS
GGGTCGGTCGGAAGGCTCCT+AGG 0.498932 5.2:+18237612 None:intergenic
CACAGACCTTGGAATCTTGT+CGG 0.500104 5.2:+18235419 None:intergenic
GCATTTGTGGTCAAGAAGGT+TGG 0.500367 5.2:-18235639 MS.gene067380:CDS
TGTTGATGAAATTCGTAAGC+AGG 0.500410 5.2:-18237328 MS.gene067380:CDS
ATCTTCCCAGTCACAGACCT+TGG 0.509926 5.2:+18235408 None:intergenic
TAAGTTGCAGAGTTTGAGAC+AGG 0.511530 5.2:-18236764 MS.gene067380:CDS
AGTGGCATTTGTGGTCAAGA+AGG 0.512122 5.2:-18235643 MS.gene067380:CDS
AACACAGCTTCTAAATCAGC+AGG 0.514041 5.2:+18235824 None:intergenic
TTCTTGACCACAAATGCCAC+TGG 0.514670 5.2:+18235645 None:intergenic
GTTTATGGAATGACTGAGTC+GGG 0.516171 5.2:-18236540 MS.gene067380:CDS
ACGATACAACATCGAGAAAA+GGG 0.518276 5.2:+18237592 None:intergenic
AAAGTGGTAGATTGGAATAG+TGG 0.520566 5.2:-18236435 MS.gene067380:CDS
GGTTTATGGAATGACTGAGT+CGG 0.521041 5.2:-18236541 MS.gene067380:CDS
GTGGTGAGCTTTGGTTGAGA+GGG 0.522929 5.2:-18236389 MS.gene067380:CDS
AGTGCCAAGGATGAAGAAGC+TGG 0.523191 5.2:-18235675 MS.gene067380:CDS
AAGATTCCAAGGTCTGTGAC+TGG 0.524838 5.2:-18235414 MS.gene067380:CDS
ATGTCGACAATTGATAAAGA+TGG 0.526979 5.2:-18236069 MS.gene067380:CDS
CGAGAAAAGGGTCGGTCGGA+AGG 0.531124 5.2:+18237604 None:intergenic
TCCAAACATGGAGGCAAAAG+TGG 0.536470 5.2:-18236451 MS.gene067380:CDS
TTCGCAACTATTCCTCACTA+GGG 0.544004 5.2:-18236482 MS.gene067380:CDS
AGTGGTGAGCTTTGGTTGAG+AGG 0.549036 5.2:-18236390 MS.gene067380:CDS
TAGTGGATGTCGCCGTTACA+GGG 0.551826 5.2:-18235784 MS.gene067380:intron
GCAGGTTGCGCCATTCAAGA+AGG 0.552672 5.2:-18235460 MS.gene067380:intron
GTGCCAAGGATGAAGAAGCT+GGG 0.553492 5.2:-18235674 MS.gene067380:CDS
CATAACACCTAATAGTACAA+TGG 0.557647 5.2:+18237392 None:intergenic
GCATTGACAGCGAAGGCAAA+GGG 0.561700 5.2:-18236799 MS.gene067380:CDS
ACACTACTAAGAGGATTCAA+TGG 0.565007 5.2:+18237348 None:intergenic
GGCATTGACAGCGAAGGCAA+AGG 0.570107 5.2:-18236800 MS.gene067380:CDS
ATTTGATAAATTCTTTCAAG+CGG 0.572308 5.2:+18235986 None:intergenic
AGAGGGCCTTCAATTATGAA+AGG 0.572900 5.2:-18236372 MS.gene067380:intron
AAGCTCACCACTTCTGCCTG+GGG 0.573330 5.2:+18236401 None:intergenic
CGACAATTGATAAAGATGGT+TGG 0.573781 5.2:-18236065 MS.gene067380:CDS
AGATTCCAAGGTCTGTGACT+GGG 0.575854 5.2:-18235413 MS.gene067380:CDS
AAAGAATTTATCAAATACAA+GGG 0.580755 5.2:-18235979 MS.gene067380:CDS
CATAAAATGGGAGTTTCACA+AGG 0.583635 5.2:-18237456 MS.gene067380:CDS
CTATTAGGTGTTATGTACCT+AGG 0.587403 5.2:-18237384 MS.gene067380:CDS
GGTACTACTGGTGTGAGCAA+AGG 0.591807 5.2:-18237090 MS.gene067380:CDS
AAACCATATAAATGGAACAT+CGG 0.598356 5.2:+18236958 None:intergenic
AGGGCTAAAACCCCATCATG+AGG 0.601023 5.2:+18237555 None:intergenic
TTCATATACTTACCCTGTAA+CGG 0.602675 5.2:+18235772 None:intergenic
TTGCAGAGTTTGAGACAGGT+CGG 0.607467 5.2:-18236760 MS.gene067380:CDS
AGTTTCTGAGTTGCTTTCGG+AGG 0.613327 5.2:+18235385 None:intergenic
AGGGTTGTTAGCTCCAAACA+TGG 0.614345 5.2:-18236463 MS.gene067380:CDS
TGGAAGTGTACTATCTCCAA+AGG 0.615514 5.2:-18235619 MS.gene067380:CDS
ACATCGAGAAAAGGGTCGGT+CGG 0.618381 5.2:+18237600 None:intergenic
ATTCAAGAAGGTTCGCAAAG+TGG 0.619277 5.2:-18235448 MS.gene067380:CDS
TGCCAAGGATGAAGAAGCTG+GGG 0.626607 5.2:-18235673 MS.gene067380:CDS
TCGGGTGCATTAGGAGCATG+CGG 0.630001 5.2:-18236522 MS.gene067380:CDS
AGAAATGGAAGTTCCAGATG+AGG 0.636066 5.2:+18237524 None:intergenic
GTCAATGCCGACAATATCGG+TGG 0.636107 5.2:+18236814 None:intergenic
AGCTCACCACTTCTGCCTGG+GGG 0.642781 5.2:+18236402 None:intergenic
TGGAGCTAACAACCCTAGTG+AGG 0.644923 5.2:+18236470 None:intergenic
TCTTCACCGACAAGATTCCA+AGG 0.652098 5.2:-18235425 MS.gene067380:CDS
GGGCTAAAACCCCATCATGA+GGG 0.653343 5.2:+18237556 None:intergenic
ATACCAAGAAGGGTGAGTGA+TGG 0.654569 5.2:+18237671 None:intergenic
CGTAAGCAGGTTAATGACTG+TGG 0.656452 5.2:-18237315 MS.gene067380:CDS
TACAACATCGAGAAAAGGGT+CGG 0.661267 5.2:+18237596 None:intergenic
ATTGTCGGCATTGACAGCGA+AGG 0.665271 5.2:-18236806 MS.gene067380:CDS
ACAGCTTCTAAATCAGCAGG+AGG 0.675381 5.2:+18235827 None:intergenic
TTGGAAGTAGAAGCAAAACA+AGG 0.677547 5.2:+18237430 None:intergenic
GTTAAGAAATTAGAACCACT+AGG 0.699081 5.2:-18237261 MS.gene067380:CDS
ATGGTGTAACAACAGCACCT+AGG 0.700872 5.2:+18237367 None:intergenic
AGAAGCTGGGGAGATTCCAG+TGG 0.713242 5.2:-18235661 MS.gene067380:CDS
GAAATAATAGGAATGCCTAG+TGG 0.714538 5.2:+18237246 None:intergenic
GTTGTTAGCTCCAAACATGG+AGG 0.741487 5.2:-18236460 MS.gene067380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAATTTATCAAATACAA+GGG - chr5.2:18237094-18237113 MS.gene067380:CDS 15.0%
!! GTTTGATTAATAATTTCAAT+TGG + chr5.2:18236939-18236958 None:intergenic 15.0%
!!! ATGTAAAATTGTTTCTTTTT+AGG - chr5.2:18236511-18236530 MS.gene067380:CDS 15.0%
!! AAACAACATTATTTGAATGA+TGG + chr5.2:18236465-18236484 None:intergenic 20.0%
!! AAGCTTATATTTGTCTAAAA+AGG + chr5.2:18237352-18237371 None:intergenic 20.0%
!! ATTTGATAAATTCTTTCAAG+CGG + chr5.2:18237090-18237109 None:intergenic 20.0%
!! GAAAGAATTTATCAAATACA+AGG - chr5.2:18237093-18237112 MS.gene067380:CDS 20.0%
!! TAAATACTAAAAGGATAACA+TGG - chr5.2:18236764-18236783 MS.gene067380:CDS 20.0%
!!! AACTTTTTCCTTAATTTCTT+AGG - chr5.2:18236956-18236975 MS.gene067380:CDS 20.0%
!!! AATAAGACTATTTTATTCTG+AGG + chr5.2:18236422-18236441 None:intergenic 20.0%
!!! ATTGTTTATTTTGATCAAGA+TGG - chr5.2:18237046-18237065 MS.gene067380:CDS 20.0%
!!! ATTGTTTCTTTTTAGGTTTA+TGG - chr5.2:18236518-18236537 MS.gene067380:CDS 20.0%
!!! ATTTTAACCCTTTTTTTTCT+TGG - chr5.2:18237591-18237610 MS.gene067380:CDS 20.0%
!!! TCTAATTTCTTAACATTTTC+AGG + chr5.2:18235806-18235825 None:intergenic 20.0%
!!! TGTTTTCCTAGATTTTTTTA+AGG - chr5.2:18236480-18236499 MS.gene067380:CDS 20.0%
!!! TTTTTACCTTTCATAATTGA+AGG + chr5.2:18236710-18236729 None:intergenic 20.0%
! AAACCATATAAATGGAACAT+CGG + chr5.2:18236118-18236137 None:intergenic 25.0%
! ACCTGTATAAAATCAACATT+AGG + chr5.2:18236394-18236413 None:intergenic 25.0%
! ACTTGAATCAATGTTAGTAT+TGG - chr5.2:18237556-18237575 MS.gene067380:CDS 25.0%
! AGAGAGATAAACCATATAAA+TGG + chr5.2:18236126-18236145 None:intergenic 25.0%
! AGGATAACATGGTTATATAA+AGG - chr5.2:18236775-18236794 MS.gene067380:CDS 25.0%
! ATAACACCTAATAGTACAAT+GGG + chr5.2:18235683-18235702 None:intergenic 25.0%
! ATGGGATAGTAAATTGAATT+TGG + chr5.2:18235665-18235684 None:intergenic 25.0%
! CCTGTATAAAATCAACATTA+GGG + chr5.2:18236393-18236412 None:intergenic 25.0%
! GTGTAAACTATTGTAAATTC+CGG + chr5.2:18235438-18235457 None:intergenic 25.0%
! TAACAACTTTGAGTAAGAAA+TGG + chr5.2:18235567-18235586 None:intergenic 25.0%
! TCAAGTATCCTAAGAAATTA+AGG + chr5.2:18236967-18236986 None:intergenic 25.0%
! TCATAGAAATCTTATTGCTA+TGG - chr5.2:18236018-18236037 MS.gene067380:CDS 25.0%
!! AATCAATGTTAGTATTGGAA+TGG - chr5.2:18237561-18237580 MS.gene067380:CDS 25.0%
!! TGTTTAATAACCAGATTTTG+AGG + chr5.2:18235932-18235951 None:intergenic 25.0%
!! TTTATAGCTTTTGTGCTTAA+AGG + chr5.2:18236352-18236371 None:intergenic 25.0%
!!! TGTTTTTTTAACCTGATTTC+TGG - chr5.2:18235893-18235912 MS.gene067380:intron 25.0%
AAACAAAGTTACCAGAAATC+AGG + chr5.2:18235907-18235926 None:intergenic 30.0%
AATCAATCTCATGCTAATGT+AGG + chr5.2:18236826-18236845 None:intergenic 30.0%
ACAAAATCGATAACATCCTT+TGG + chr5.2:18237473-18237492 None:intergenic 30.0%
ATGTCGACAATTGATAAAGA+TGG - chr5.2:18237004-18237023 MS.gene067380:CDS 30.0%
ATTTCATCAACACTACTAAG+AGG + chr5.2:18235737-18235756 None:intergenic 30.0%
CATAACACCTAATAGTACAA+TGG + chr5.2:18235684-18235703 None:intergenic 30.0%
CTTAGGATACTTGAATAATG+AGG - chr5.2:18236973-18236992 MS.gene067380:CDS 30.0%
GCACATCCTTAAAAAAATCT+AGG + chr5.2:18236489-18236508 None:intergenic 30.0%
GTTAAGAAATTAGAACCACT+AGG - chr5.2:18235812-18235831 MS.gene067380:CDS 30.0%
GTTACCTTTAGTCAAATCAA+TGG - chr5.2:18235583-18235602 MS.gene067380:intron 30.0%
TACTATCCCATTGTACTATT+AGG - chr5.2:18235674-18235693 MS.gene067380:CDS 30.0%
TGACATTGATGAGACTATTA+GGG - chr5.2:18236198-18236217 MS.gene067380:intron 30.0%
TTCATATACTTACCCTGTAA+CGG + chr5.2:18237304-18237323 None:intergenic 30.0%
TTGACATTGATGAGACTATT+AGG - chr5.2:18236197-18236216 MS.gene067380:intron 30.0%
! AACAGCTAGATACACATTTT+TGG + chr5.2:18236092-18236111 None:intergenic 30.0%
! AATTTTGCATCCTGAAATAG+TGG - chr5.2:18237272-18237291 MS.gene067380:CDS 30.0%
! ATCGAATCCTTTTCATTTTC+TGG + chr5.2:18235857-18235876 None:intergenic 30.0%
! CTATTGTAAATTCCGGTTTT+TGG + chr5.2:18235431-18235450 None:intergenic 30.0%
!! TAAAGGTTTTGTCTATTGTG+TGG - chr5.2:18236792-18236811 MS.gene067380:CDS 30.0%
!! TTTTCTGGCACAGAAATAAT+AGG + chr5.2:18235842-18235861 None:intergenic 30.0%
!! TTTTTGGTGAATACCAAGAA+GGG + chr5.2:18235415-18235434 None:intergenic 30.0%
!!! CCCTAATGTTGATTTTATAC+AGG - chr5.2:18236390-18236409 MS.gene067380:CDS 30.0%
AAAGTGGTAGATTGGAATAG+TGG - chr5.2:18236638-18236657 MS.gene067380:intron 35.0%
AACGATACAACATCGAGAAA+AGG + chr5.2:18235485-18235504 None:intergenic 35.0%
AATTGGAATAGCAACAAGAC+AGG + chr5.2:18236922-18236941 None:intergenic 35.0%
ACAATAGTTTACACTCTCCT+AGG - chr5.2:18235444-18235463 MS.gene067380:CDS 35.0%
ACACTACTAAGAGGATTCAA+TGG + chr5.2:18235728-18235747 None:intergenic 35.0%
ACGATACAACATCGAGAAAA+GGG + chr5.2:18235484-18235503 None:intergenic 35.0%
CAACCTGCCAAGAAAAAAAA+GGG + chr5.2:18237601-18237620 None:intergenic 35.0%
CATAAAATGGGAGTTTCACA+AGG - chr5.2:18235617-18235636 MS.gene067380:CDS 35.0%
CGACAATTGATAAAGATGGT+TGG - chr5.2:18237008-18237027 MS.gene067380:CDS 35.0%
GAAATAATAGGAATGCCTAG+TGG + chr5.2:18235830-18235849 None:intergenic 35.0%
TATCAAATACAAGGGCTTTC+AGG - chr5.2:18237102-18237121 MS.gene067380:CDS 35.0%
TCCAGATGAGGAATCAATAA+GGG + chr5.2:18235540-18235559 None:intergenic 35.0%
TCTTGGTATTCACCAAAAAC+CGG - chr5.2:18235416-18235435 MS.gene067380:CDS 35.0%
TGGTTTATCTCTCTATGCTA+CGG - chr5.2:18236132-18236151 MS.gene067380:intron 35.0%
TTAGTCAAATCAATGGCTTC+TGG - chr5.2:18235590-18235609 MS.gene067380:intron 35.0%
TTCCAGATGAGGAATCAATA+AGG + chr5.2:18235541-18235560 None:intergenic 35.0%
TTCTGTGCCAGAAAATGAAA+AGG - chr5.2:18235847-18235866 MS.gene067380:intron 35.0%
TTGCCGATGTTCCATTTATA+TGG - chr5.2:18236112-18236131 MS.gene067380:intron 35.0%
TTGGAAGTAGAAGCAAAACA+AGG + chr5.2:18235646-18235665 None:intergenic 35.0%
! CTATTAGGTGTTATGTACCT+AGG - chr5.2:18235689-18235708 MS.gene067380:intron 35.0%
! GCTGCTATATTGTTTTCTTC+TGG - chr5.2:18235962-18235981 MS.gene067380:intron 35.0%
! GCTTCTGGTCTTCATAAAAT+GGG - chr5.2:18235605-18235624 MS.gene067380:CDS 35.0%
! TATTGCTATGGTTGAGCTTT+TGG - chr5.2:18236030-18236049 MS.gene067380:CDS 35.0%
! TGTTGATGAAATTCGTAAGC+AGG - chr5.2:18235745-18235764 MS.gene067380:intron 35.0%
! TTGTTTTCTTCTGGTACTAC+TGG - chr5.2:18235971-18235990 MS.gene067380:intron 35.0%
! TTTTCCATATATCAGTGCCA+AGG - chr5.2:18237385-18237404 MS.gene067380:CDS 35.0%
!! GAAGCCATTGATTTGACTAA+AGG + chr5.2:18235590-18235609 None:intergenic 35.0%
!!! ATTTTTTCTCACCCTCATGA+TGG - chr5.2:18235506-18235525 MS.gene067380:intron 35.0%
!!! CTTTGTTTTGCCTCAAAATC+TGG - chr5.2:18235919-18235938 MS.gene067380:intron 35.0%
!!! GTTTTTGGTGAATACCAAGA+AGG + chr5.2:18235416-18235435 None:intergenic 35.0%
!!! TAACCCTTTTTTTTCTTGGC+AGG - chr5.2:18237595-18237614 MS.gene067380:CDS 35.0%
!!! TATCGATTTTGTTGCTAAGC+AGG - chr5.2:18237481-18237500 MS.gene067380:CDS 35.0%
!!! TTTTTTCTCACCCTCATGAT+GGG - chr5.2:18235507-18235526 MS.gene067380:intron 35.0%
AACACAGCTTCTAAATCAGC+AGG + chr5.2:18237252-18237271 None:intergenic 40.0%
AATCAACATTAGGGAGAGCT+TGG + chr5.2:18236384-18236403 None:intergenic 40.0%
ACTTTGCGAACCTTCTTGAA+TGG + chr5.2:18237626-18237645 None:intergenic 40.0%
AGAAATGGAAGTTCCAGATG+AGG + chr5.2:18235552-18235571 None:intergenic 40.0%
AGAGGGCCTTCAATTATGAA+AGG - chr5.2:18236701-18236720 MS.gene067380:CDS 40.0%
ATTCAAGAAGGTTCGCAAAG+TGG - chr5.2:18237625-18237644 MS.gene067380:CDS 40.0%
GCAACCTGCCAAGAAAAAAA+AGG + chr5.2:18237602-18237621 None:intergenic 40.0%
GCTACGGGATTATTGTCATT+GGG - chr5.2:18236148-18236167 MS.gene067380:intron 40.0%
GGTTTATCTCTCTATGCTAC+GGG - chr5.2:18236133-18236152 MS.gene067380:intron 40.0%
GGTTTATGGAATGACTGAGT+CGG - chr5.2:18236532-18236551 MS.gene067380:CDS 40.0%
GTTTATGGAATGACTGAGTC+GGG - chr5.2:18236533-18236552 MS.gene067380:CDS 40.0%
TACAACATCGAGAAAAGGGT+CGG + chr5.2:18235480-18235499 None:intergenic 40.0%
TCTTGTTCCACCGATATTGT+CGG - chr5.2:18236252-18236271 MS.gene067380:intron 40.0%
TGCTACGGGATTATTGTCAT+TGG - chr5.2:18236147-18236166 MS.gene067380:intron 40.0%
TTCGCAACTATTCCTCACTA+GGG - chr5.2:18236591-18236610 MS.gene067380:intron 40.0%
TTTCGCAACTATTCCTCACT+AGG - chr5.2:18236590-18236609 MS.gene067380:intron 40.0%
! AAAGATGGTTGGCTACATAC+TGG - chr5.2:18237019-18237038 MS.gene067380:CDS 40.0%
! AGCAGTTTCTGAGTTGCTTT+CGG + chr5.2:18237694-18237713 None:intergenic 40.0%
! GGCTTCTGGTCTTCATAAAA+TGG - chr5.2:18235604-18235623 MS.gene067380:CDS 40.0%
! TAAGTTGCAGAGTTTGAGAC+AGG - chr5.2:18236309-18236328 MS.gene067380:intron 40.0%
! TGGAAGTGTACTATCTCCAA+AGG - chr5.2:18237454-18237473 MS.gene067380:CDS 40.0%
! TTTTTCTCACCCTCATGATG+GGG - chr5.2:18235508-18235527 MS.gene067380:intron 40.0%
!! TCATCCTTGGCACTGATATA+TGG + chr5.2:18237392-18237411 None:intergenic 40.0%
AAGATTCCAAGGTCTGTGAC+TGG - chr5.2:18237659-18237678 MS.gene067380:CDS 45.0%
ACAGCTTCTAAATCAGCAGG+AGG + chr5.2:18237249-18237268 None:intergenic 45.0%
ACAGGCAGAAAAGGTTCAAG+TGG + chr5.2:18236904-18236923 None:intergenic 45.0%
AGATTCCAAGGTCTGTGACT+GGG - chr5.2:18237660-18237679 MS.gene067380:CDS 45.0%
AGCAACAAGACAGGCAGAAA+AGG + chr5.2:18236913-18236932 None:intergenic 45.0%
AGGGTTGTTAGCTCCAAACA+TGG - chr5.2:18236610-18236629 MS.gene067380:intron 45.0%
AGTGGCATTTGTGGTCAAGA+AGG - chr5.2:18237430-18237449 MS.gene067380:CDS 45.0%
ATACCAAGAAGGGTGAGTGA+TGG + chr5.2:18235405-18235424 None:intergenic 45.0%
ATACCATCACTCACCCTTCT+TGG - chr5.2:18235399-18235418 MS.gene067380:CDS 45.0%
ATGGTGTAACAACAGCACCT+AGG + chr5.2:18235709-18235728 None:intergenic 45.0%
CACAGACCTTGGAATCTTGT+CGG + chr5.2:18237657-18237676 None:intergenic 45.0%
CGTAAGCAGGTTAATGACTG+TGG - chr5.2:18235758-18235777 MS.gene067380:intron 45.0%
GAAAAGGTTCAAGTGGCTTG+AGG + chr5.2:18236897-18236916 None:intergenic 45.0%
GCATTTGTGGTCAAGAAGGT+TGG - chr5.2:18237434-18237453 MS.gene067380:CDS 45.0%
GCTGTCAATGCCGACAATAT+CGG + chr5.2:18236265-18236284 None:intergenic 45.0%
GTTGTTAGCTCCAAACATGG+AGG - chr5.2:18236613-18236632 MS.gene067380:intron 45.0%
TCCAAACATGGAGGCAAAAG+TGG - chr5.2:18236622-18236641 MS.gene067380:intron 45.0%
TCTTCACCGACAAGATTCCA+AGG - chr5.2:18237648-18237667 MS.gene067380:CDS 45.0%
TGGAGGCAAAAGTGGTAGAT+TGG - chr5.2:18236630-18236649 MS.gene067380:intron 45.0%
TTCTTGACCACAAATGCCAC+TGG + chr5.2:18237431-18237450 None:intergenic 45.0%
! AGTTTCTGAGTTGCTTTCGG+AGG + chr5.2:18237691-18237710 None:intergenic 45.0%
! GGGTGAGTGATGGTATTTTG+TGG + chr5.2:18235395-18235414 None:intergenic 45.0%
! TTGCAGAGTTTGAGACAGGT+CGG - chr5.2:18236313-18236332 MS.gene067380:intron 45.0%
!! ACCACTTTTGCCTCCATGTT+TGG + chr5.2:18236626-18236645 None:intergenic 45.0%
!! GCCCTTATTGATTCCTCATC+TGG - chr5.2:18235536-18235555 MS.gene067380:intron 45.0%
!! TAATAAATATAAATACTAAA+AGG - chr5.2:18236755-18236774 MS.gene067380:CDS 5.0%
AAAGCTCACCACTTCTGCCT+GGG + chr5.2:18236676-18236695 None:intergenic 50.0%
ACATCGAGAAAAGGGTCGGT+CGG + chr5.2:18235476-18235495 None:intergenic 50.0%
ACGGCGACATCCACTATTTC+AGG + chr5.2:18237285-18237304 None:intergenic 50.0%
AGGGCTAAAACCCCATCATG+AGG + chr5.2:18235521-18235540 None:intergenic 50.0%
AGTGCCAAGGATGAAGAAGC+TGG - chr5.2:18237398-18237417 MS.gene067380:CDS 50.0%
ATCTTCCCAGTCACAGACCT+TGG + chr5.2:18237668-18237687 None:intergenic 50.0%
ATGACTGAGTCGGGTGCATT+AGG - chr5.2:18236542-18236561 MS.gene067380:CDS 50.0%
GGAGATTCCAGTGGCATTTG+TGG - chr5.2:18237421-18237440 MS.gene067380:CDS 50.0%
GGGCTAAAACCCCATCATGA+GGG + chr5.2:18235520-18235539 None:intergenic 50.0%
GGTACTACTGGTGTGAGCAA+AGG - chr5.2:18235983-18236002 MS.gene067380:CDS 50.0%
GTCAATGCCGACAATATCGG+TGG + chr5.2:18236262-18236281 None:intergenic 50.0%
GTGCCAAGGATGAAGAAGCT+GGG - chr5.2:18237399-18237418 MS.gene067380:CDS 50.0%
TGCCAAGGATGAAGAAGCTG+GGG - chr5.2:18237400-18237419 MS.gene067380:CDS 50.0%
TGGAGCTAACAACCCTAGTG+AGG + chr5.2:18236606-18236625 None:intergenic 50.0%
! AGTGGTGAGCTTTGGTTGAG+AGG - chr5.2:18236683-18236702 MS.gene067380:intron 50.0%
! CTATGGTTGAGCTTTTGGCG+AGG - chr5.2:18236035-18236054 MS.gene067380:CDS 50.0%
! GCATTGACAGCGAAGGCAAA+GGG - chr5.2:18236274-18236293 MS.gene067380:intron 50.0%
! GCGAAGGCAAAGGGTGTAAA+TGG - chr5.2:18236283-18236302 MS.gene067380:intron 50.0%
! GTGGTGAGCTTTGGTTGAGA+GGG - chr5.2:18236684-18236703 MS.gene067380:CDS 50.0%
! TAGTGGATGTCGCCGTTACA+GGG - chr5.2:18237289-18237308 MS.gene067380:CDS 50.0%
!! ATAGTGGATGTCGCCGTTAC+AGG - chr5.2:18237288-18237307 MS.gene067380:CDS 50.0%
!! ATTGTCGGCATTGACAGCGA+AGG - chr5.2:18236267-18236286 MS.gene067380:intron 50.0%
AAGCTCACCACTTCTGCCTG+GGG + chr5.2:18236675-18236694 None:intergenic 55.0%
AGAAGCTGGGGAGATTCCAG+TGG - chr5.2:18237412-18237431 MS.gene067380:CDS 55.0%
CAAAGCTCACCACTTCTGCC+TGG + chr5.2:18236677-18236696 None:intergenic 55.0%
CAGGCAGAAGTGGTGAGCTT+TGG - chr5.2:18236675-18236694 MS.gene067380:intron 55.0%
CTCCCCAGCTTCTTCATCCT+TGG + chr5.2:18237405-18237424 None:intergenic 55.0%
GCAGGTTGCGCCATTCAAGA+AGG - chr5.2:18237613-18237632 MS.gene067380:CDS 55.0%
! TCGGGTGCATTAGGAGCATG+CGG - chr5.2:18236551-18236570 MS.gene067380:intron 55.0%
! TTTTTGCCCCCAGGCAGAAG+TGG - chr5.2:18236665-18236684 MS.gene067380:intron 55.0%
!! GGCATTGACAGCGAAGGCAA+AGG - chr5.2:18236273-18236292 MS.gene067380:intron 55.0%
AGCTCACCACTTCTGCCTGG+GGG + chr5.2:18236674-18236693 None:intergenic 60.0%
CGAGAAAAGGGTCGGTCGGA+AGG + chr5.2:18235472-18235491 None:intergenic 60.0%
! AGTGGTGCGTTTTTGCCCCC+AGG - chr5.2:18236656-18236675 MS.gene067380:intron 60.0%
GGGTCGGTCGGAAGGCTCCT+AGG + chr5.2:18235464-18235483 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 18235365 18237730 18235365 ID=MS.gene067380
chr5.2 mRNA 18235365 18237730 18235365 ID=MS.gene067380.t1;Parent=MS.gene067380
chr5.2 exon 18236684 18237730 18236684 ID=MS.gene067380.t1.exon1;Parent=MS.gene067380.t1
chr5.2 CDS 18236684 18237730 18236684 ID=cds.MS.gene067380.t1;Parent=MS.gene067380.t1
chr5.2 exon 18236373 18236562 18236373 ID=MS.gene067380.t1.exon2;Parent=MS.gene067380.t1
chr5.2 CDS 18236373 18236562 18236373 ID=cds.MS.gene067380.t1;Parent=MS.gene067380.t1
chr5.2 exon 18235972 18236117 18235972 ID=MS.gene067380.t1.exon3;Parent=MS.gene067380.t1
chr5.2 CDS 18235972 18236117 18235972 ID=cds.MS.gene067380.t1;Parent=MS.gene067380.t1
chr5.2 exon 18235785 18235852 18235785 ID=MS.gene067380.t1.exon4;Parent=MS.gene067380.t1
chr5.2 CDS 18235785 18235852 18235785 ID=cds.MS.gene067380.t1;Parent=MS.gene067380.t1
chr5.2 exon 18235593 18235695 18235593 ID=MS.gene067380.t1.exon5;Parent=MS.gene067380.t1
chr5.2 CDS 18235593 18235695 18235593 ID=cds.MS.gene067380.t1;Parent=MS.gene067380.t1
chr5.2 exon 18235365 18235478 18235365 ID=MS.gene067380.t1.exon6;Parent=MS.gene067380.t1
chr5.2 CDS 18235365 18235478 18235365 ID=cds.MS.gene067380.t1;Parent=MS.gene067380.t1
Gene Sequence

>MS.gene067380

ATGGCTGCAAATTTAAACTATGACATGCCACAAAATACCATCACTCACCCTTCTTGGTATTCACCAAAAACCGGAATTTACAATAGTTTACACTCTCCTAGGAGCCTTCCGACCGACCCTTTTCTCGATGTTGTATCGTTCATTTTTTCTCACCCTCATGATGGGGTTTTAGCCCTTATTGATTCCTCATCTGGAACTTCCATTTCTTACTCAAAGTTGTTACCTTTAGTCAAATCAATGGCTTCTGGTCTTCATAAAATGGGAGTTTCACAAGGTGACCTTGTTTTGCTTCTACTTCCAAATTCAATTTACTATCCCATTGTACTATTAGGTGTTATGTACCTAGGTGCTGTTGTTACACCATTGAATCCTCTTAGTAGTGTTGATGAAATTCGTAAGCAGGTTAATGACTGTGGTGTGAGTTTTGCTTTTACTATACCTGAAAATGTTAAGAAATTAGAACCACTAGGCATTCCTATTATTTCTGTGCCAGAAAATGAAAAGGATTCGATGAATGATTGTTTCTCATGTTTTTTTAACCTGATTTCTGGTAACTTTGTTTTGCCTCAAAATCTGGTTATTAAACAAGAAGACACTGCTGCTATATTGTTTTCTTCTGGTACTACTGGTGTGAGCAAAGGAGTTGTTTTAACTCATAGAAATCTTATTGCTATGGTTGAGCTTTTGGCGAGGTTTGAAACTTCTAAATATGAATGCTCTAGTTCCAAAAATGTGTATCTAGCTGTTTTGCCGATGTTCCATTTATATGGTTTATCTCTCTATGCTACGGGATTATTGTCATTGGGTTCTTCAATCGTTGTAATGAGAAAATTTGACATTGATGAGACTATTAGGGTGATCGATAAATATAAAGTTACACACTTTCATCTTGTTCCACCGATATTGTCGGCATTGACAGCGAAGGCAAAGGGTGTAAATGGAAGTAAGTTGCAGAGTTTGAGACAGGTCGGCTCTAGTGCAGCGCCTTTAAGCACAAAAGCTATAAATGATTTTGTCCAAGCTCTCCCTAATGTTGATTTTATACAGGTAAAAACCTCAGAATAAAATAGTCTTATTTAAAGAATGCAAGTCATGATCCATCATTCAAATAATGTTGTTTTCCTAGATTTTTTTAAGGATGTGCAGATGTAAAATTGTTTCTTTTTAGGTTTATGGAATGACTGAGTCGGGTGCATTAGGAGCATGCGGTTTCAATACAGAAAAATTTCGCAACTATTCCTCACTAGGGTTGTTAGCTCCAAACATGGAGGCAAAAGTGGTAGATTGGAATAGTGGTGCGTTTTTGCCCCCAGGCAGAAGTGGTGAGCTTTGGTTGAGAGGGCCTTCAATTATGAAAGGTAAAAAAAAATCTGCATTTTTTATGAATAGATAATAAATATAAATACTAAAAGGATAACATGGTTATATAAAGGTTTTGTCTATTGTGTGGAATCTTAACCTACATTAGCATGAGATTGATTCAATGATTTCAACTGTTTTGTTGCTGTAACTTTTGTTTCTGTCTTATTCCTCAAGCCACTTGAACCTTTTCTGCCTGTCTTGTTGCTATTCCAATTGAAATTATTAATCAAACTTTTTCCTTAATTTCTTAGGATACTTGAATAATGAGGAAGCTACAATGTCGACAATTGATAAAGATGGTTGGCTACATACTGGAGATATTGTTTATTTTGATCAAGATGGATATTTATATTTATTTGACCGCTTGAAAGAATTTATCAAATACAAGGGCTTTCAGGTATCAATTTTTTTGTTTATTTAAATTTTATAGTGATGTTACATATTTTTATTTTACAGTTTATTTTTACTCAATTAGTATGCATTGTTCTTATTTATATCACACATGATCTGTTACAGATTCCTCCTGCTGATTTAGAAGCTGTGTTAATTTTGCATCCTGAAATAGTGGATGTCGCCGTTACAGGGTAAGTATATGAACACTTCATTTATGTCTTCTAAGATGCCTTTTTAGACAAATATAAGCTTAAGTGTTTCATCATTTTCCATATATCAGTGCCAAGGATGAAGAAGCTGGGGAGATTCCAGTGGCATTTGTGGTCAAGAAGGTTGGAAGTGTACTATCTCCAAAGGATGTTATCGATTTTGTTGCTAAGCAGGTTCTTCTTTATAAGACAGACATGAGTTCTATGATATTTGAATTAATGTCACTACTTGAATCAATGTTAGTATTGGAATGGTTTTCAAATTTTAACCCTTTTTTTTCTTGGCAGGTTGCGCCATTCAAGAAGGTTCGCAAAGTGGTCTTCACCGACAAGATTCCAAGGTCTGTGACTGGGAAGATCCTCCGAAAGCAACTCAGAAACTGCTTGCCTTCTAAACTCTAA
Protein sequence

>MS.gene067380.t1

MAANLNYDMPQNTITHPSWYSPKTGIYNSLHSPRSLPTDPFLDVVSFIFSHPHDGVLALIDSSSGTSISYSKLLPLVKSMASGLHKMGVSQGDLVLLLLPNSIYYPIVLLGVMYLGAVVTPLNPLSSVDEIRKQVNDCGVSFAFTIPENVKKLEPLGIPIISVPENEKDSMNDCFSCFFNLISGNFVLPQNLVIKQEDTAAILFSSGTTGVSKGVVLTHRNLIAMVELLARFETSKYECSSSKNVYLAVLPMFHLYGLSLYATGLLSLGSSIVVMRKFDIDETIRVIDKYKVTHFHLVPPILSALTAKAKGVNGSKLQSLRQVGSSAAPLSTKAINDFVQALPNVDFIQVYGMTESGALGACGFNTEKFRNYSSLGLLAPNMEAKVVDWNSGAFLPPGRSGELWLRGPSIMKGYLNNEEATMSTIDKDGWLHTGDIVYFDQDGYLYLFDRLKEFIKYKGFQIPPADLEAVLILHPEIVDVAVTGAKDEEAGEIPVAFVVKKVGSVLSPKDVIDFVAKQVAPFKKVRKVVFTDKIPRSVTGKILRKQLRNCLPSKL