AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75039


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75039.t1 MTR_4g077900 97.699 478 11 0 86 563 1 478 0.0 952
MS.gene75039.t1 MTR_5g027480 79.464 560 109 2 4 563 2 555 0.0 909
MS.gene75039.t1 MTR_5g027500 79.021 572 103 3 4 563 2 568 0.0 892
MS.gene75039.t1 MTR_1g026310 45.138 545 288 5 26 563 20 560 6.17e-158 463
MS.gene75039.t1 MTR_8g039720 43.920 551 288 7 26 563 17 559 6.43e-152 447
MS.gene75039.t1 MTR_1g090737 44.964 556 276 12 26 563 27 570 5.80e-141 420
MS.gene75039.t1 MTR_4g057730 41.651 533 295 8 31 555 10 534 2.21e-132 397
MS.gene75039.t1 MTR_3g088880 41.600 500 273 6 60 555 64 548 2.99e-130 392
MS.gene75039.t1 MTR_3g088870 43.173 498 263 9 64 555 67 550 3.45e-129 389
MS.gene75039.t1 MTR_1g063120 40.179 560 307 10 24 563 4 555 3.96e-128 386
MS.gene75039.t1 MTR_2g095510 39.706 544 303 8 31 563 10 539 7.13e-128 385
MS.gene75039.t1 MTR_1g063110 39.779 543 310 7 24 555 4 540 1.28e-122 372
MS.gene75039.t1 MTR_2g105570 39.739 536 305 10 36 561 20 547 1.18e-112 346
MS.gene75039.t1 MTR_4g057730 41.667 468 257 8 31 490 10 469 2.10e-109 335
MS.gene75039.t1 MTR_1g073180 38.889 522 280 11 48 555 30 526 5.20e-109 337
MS.gene75039.t1 MTR_4g005750 38.606 531 312 9 36 561 19 540 4.09e-102 319
MS.gene75039.t1 MTR_4g128337 38.160 511 292 10 65 563 50 548 5.35e-101 316
MS.gene75039.t1 MTR_4g057730 40.444 450 248 8 31 470 10 449 1.03e-99 310
MS.gene75039.t1 MTR_1g073180 38.730 488 265 10 60 538 69 531 1.49e-99 312
MS.gene75039.t1 MTR_3g460770 34.004 547 339 8 26 563 8 541 1.92e-98 310
MS.gene75039.t1 MTR_5g007640 38.370 503 299 7 65 561 88 585 7.93e-98 309
MS.gene75039.t1 MTR_2g095510 38.242 455 256 8 31 474 10 450 2.26e-94 296
MS.gene75039.t1 MTR_1g026470 39.119 386 224 5 26 404 20 401 1.77e-81 261
MS.gene75039.t1 MTR_1g026430 39.119 386 224 5 26 404 20 401 3.79e-81 260
MS.gene75039.t1 MTR_3g035130 30.862 499 301 15 74 553 32 505 5.89e-53 188
MS.gene75039.t1 MTR_1569s0010 27.413 518 330 12 74 556 22 528 6.40e-44 164
MS.gene75039.t1 MTR_5g076240 28.752 553 337 17 41 557 11 542 6.85e-44 164
MS.gene75039.t1 MTR_3g035130 30.684 453 270 15 74 507 32 459 5.06e-42 157
MS.gene75039.t1 MTR_3g064420 27.154 534 320 16 70 556 36 547 1.92e-39 152
MS.gene75039.t1 MTR_0803s0020 28.656 506 295 16 76 549 263 734 5.06e-39 153
MS.gene75039.t1 MTR_4g011790 28.389 391 247 10 196 562 217 598 4.81e-38 148
MS.gene75039.t1 MTR_5g076220 27.810 525 325 16 70 557 36 543 5.01e-38 148
MS.gene75039.t1 MTR_4g013210 29.455 404 242 13 192 562 52 445 1.73e-37 144
MS.gene75039.t1 MTR_4g011790 28.496 379 238 10 196 550 217 586 5.75e-36 142
MS.gene75039.t1 MTR_0161s0050 28.686 373 230 9 204 556 188 544 6.25e-36 142
MS.gene75039.t1 MTR_4g011790 27.750 400 247 12 196 562 217 607 1.34e-35 141
MS.gene75039.t1 MTR_8g074040 28.000 500 315 17 86 556 94 577 2.86e-34 137
MS.gene75039.t1 MTR_5g076200 26.577 523 332 16 70 556 36 542 2.60e-33 134
MS.gene75039.t1 MTR_5g008820 27.723 505 306 18 86 556 52 531 4.32e-32 130
MS.gene75039.t1 MTR_5g023730 26.112 517 330 17 75 561 48 542 9.33e-32 129
MS.gene75039.t1 MTR_2g030240 25.865 549 313 16 77 563 31 547 8.16e-31 127
MS.gene75039.t1 MTR_8g074040 28.646 384 235 13 204 563 106 474 1.46e-30 125
MS.gene75039.t1 MTR_2g044180 29.891 368 219 11 212 556 110 461 1.68e-30 125
MS.gene75039.t1 MTR_2g044180 29.891 368 219 11 212 556 201 552 3.08e-30 125
MS.gene75039.t1 MTR_4g013210 28.954 373 222 12 192 531 204 566 3.43e-30 125
MS.gene75039.t1 MTR_5g008800 27.309 498 321 15 86 557 52 534 4.08e-30 124
MS.gene75039.t1 MTR_4g013210 27.157 394 223 11 192 562 52 404 1.10e-29 121
MS.gene75039.t1 MTR_4g013210 26.650 394 225 10 192 562 204 556 3.60e-29 122
MS.gene75039.t1 MTR_8g074120 27.200 375 228 11 206 557 137 489 4.71e-29 121
MS.gene75039.t1 MTR_4g121600 25.427 527 327 17 75 556 47 552 2.23e-28 119
MS.gene75039.t1 MTR_1g026350 41.791 134 78 0 26 159 20 153 3.09e-28 111
MS.gene75039.t1 MTR_2g030240 26.598 391 236 10 210 563 77 453 2.18e-26 112
MS.gene75039.t1 MTR_1g104810 24.528 530 308 15 27 480 55 568 2.30e-24 108
MS.gene75039.t1 MTR_3g087980 26.337 486 270 18 74 483 106 579 4.08e-24 107
MS.gene75039.t1 MTR_3g084450 26.055 545 293 18 63 503 94 632 2.07e-23 105
MS.gene75039.t1 MTR_1g104810 27.865 384 211 12 146 480 135 501 3.28e-23 104
MS.gene75039.t1 MTR_7g109830 26.062 518 307 18 43 490 36 547 2.92e-22 101
MS.gene75039.t1 MTR_1g030290 29.619 341 172 14 206 485 250 583 5.06e-22 100
MS.gene75039.t1 MTR_8g083170 25.901 583 320 20 63 540 96 671 9.32e-22 100
MS.gene75039.t1 MTR_7g084850 24.440 536 349 16 72 563 201 724 1.30e-21 99.8
MS.gene75039.t1 MTR_3g084450 27.229 415 212 14 168 503 21 424 1.52e-21 98.6
MS.gene75039.t1 MTR_1g086600 24.517 518 317 14 43 490 58 571 5.72e-21 97.4
MS.gene75039.t1 MTR_5g009350 24.860 535 313 19 28 485 22 544 1.29e-20 95.9
MS.gene75039.t1 MTR_5g009350 24.860 535 313 19 28 485 22 544 1.76e-20 95.9
MS.gene75039.t1 MTR_5g009350 24.860 535 313 19 28 485 22 544 2.01e-20 95.5
MS.gene75039.t1 MTR_5g009350 24.860 535 313 19 28 485 22 544 2.14e-20 95.5
MS.gene75039.t1 MTR_4g057755 52.778 72 34 0 419 490 46 117 3.55e-20 87.0
MS.gene75039.t1 MTR_5g009360 24.597 496 298 16 56 485 59 544 1.26e-19 93.2
MS.gene75039.t1 MTR_5g009360 27.729 339 190 11 194 485 88 418 3.26e-18 88.2
MS.gene75039.t1 MTR_1054s0020 23.154 501 341 11 71 554 294 767 5.97e-18 88.2
MS.gene75039.t1 MTR_3g082660 27.811 338 166 14 208 479 284 609 4.72e-17 85.1
MS.gene75039.t1 MTR_4g013210 26.821 302 167 9 192 480 204 464 4.76e-17 84.7
MS.gene75039.t1 MTR_3g084470 30.544 239 135 8 305 528 419 641 1.63e-16 83.6
MS.gene75039.t1 MTR_3g088890 50.794 63 31 0 465 527 10 72 4.47e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75039.t1 AT4G19010 59.640 555 215 5 15 563 11 562 0.0 660
MS.gene75039.t1 AT1G20510 44.630 540 288 5 26 561 10 542 4.39e-161 471
MS.gene75039.t1 AT1G20480 42.077 549 297 7 26 563 27 565 2.41e-149 441
MS.gene75039.t1 AT1G20500 42.210 552 297 7 21 563 12 550 1.76e-146 433
MS.gene75039.t1 AT4G05160 40.183 545 308 6 29 563 8 544 2.32e-134 402
MS.gene75039.t1 AT5G38120 40.541 555 301 9 21 563 13 550 6.56e-134 401
MS.gene75039.t1 AT5G63380 39.817 545 302 8 26 555 17 550 1.48e-133 400
MS.gene75039.t1 AT1G20510 43.041 467 259 3 26 490 10 471 1.38e-132 395
MS.gene75039.t1 AT1G20510 42.094 449 249 5 26 470 10 451 2.87e-120 363
MS.gene75039.t1 AT5G38120 39.306 519 286 9 21 527 13 514 2.78e-118 360
MS.gene75039.t1 AT3G21240 39.085 568 317 12 11 563 1 554 4.95e-113 347
MS.gene75039.t1 AT5G38120 39.419 482 263 9 21 490 13 477 7.69e-108 332
MS.gene75039.t1 AT5G38120 39.419 482 263 9 21 490 13 477 7.69e-108 332
MS.gene75039.t1 AT1G51680 41.176 510 284 6 65 563 57 561 1.64e-106 331
MS.gene75039.t1 AT1G65060 39.483 542 308 10 21 556 30 557 4.69e-105 327
MS.gene75039.t1 AT3G21230 38.053 565 332 8 7 561 10 566 6.00e-104 325
MS.gene75039.t1 AT1G20490 39.161 429 241 8 21 440 12 429 2.65e-93 293
MS.gene75039.t1 AT1G20490 39.161 429 241 8 21 440 12 429 2.65e-93 293
MS.gene75039.t1 AT3G21230 37.248 545 320 9 7 541 10 542 4.73e-93 296
MS.gene75039.t1 AT1G62940 37.132 509 297 9 63 561 43 538 9.83e-93 295
MS.gene75039.t1 AT1G51680 40.084 474 268 6 65 527 57 525 2.16e-91 291
MS.gene75039.t1 AT3G21240 37.626 497 281 12 11 492 1 483 1.34e-86 277
MS.gene75039.t1 AT3G21240 37.626 497 281 12 11 492 1 483 1.34e-86 277
MS.gene75039.t1 AT3G21230 36.895 496 295 8 7 492 10 497 7.31e-82 265
MS.gene75039.t1 AT1G51680 39.408 439 250 6 65 492 57 490 1.07e-80 261
MS.gene75039.t1 AT1G65060 36.853 464 261 11 21 472 30 473 2.24e-72 240
MS.gene75039.t1 AT3G48990 28.747 487 329 11 73 553 30 504 4.40e-49 178
MS.gene75039.t1 AT3G21230 32.235 425 270 8 7 421 10 426 2.66e-45 166
MS.gene75039.t1 AT1G77240 29.885 522 312 19 73 561 43 543 4.75e-44 164
MS.gene75039.t1 AT5G16370 29.941 511 295 19 86 557 53 539 1.16e-43 164
MS.gene75039.t1 AT1G21540 27.042 551 345 19 47 561 19 548 2.27e-42 160
MS.gene75039.t1 AT1G21530 27.938 519 321 19 73 557 44 543 8.37e-41 155
MS.gene75039.t1 AT1G65890 27.451 510 319 17 86 556 52 549 1.79e-40 155
MS.gene75039.t1 AT5G16340 29.020 510 299 18 86 556 53 538 4.05e-40 154
MS.gene75039.t1 AT1G21530 27.853 517 322 19 73 557 44 541 1.68e-39 152
MS.gene75039.t1 AT1G65880 26.641 518 314 16 86 556 52 550 2.73e-38 149
MS.gene75039.t1 AT1G20560 28.827 503 309 15 86 556 54 539 7.01e-37 144
MS.gene75039.t1 AT1G75960 29.273 509 301 16 86 557 53 539 1.06e-36 144
MS.gene75039.t1 AT1G66120 28.287 502 318 14 86 556 52 542 3.14e-36 143
MS.gene75039.t1 AT1G30520 26.465 529 312 16 83 557 42 547 1.33e-33 135
MS.gene75039.t1 AT1G30520 26.465 529 312 16 83 557 42 547 1.33e-33 135
MS.gene75039.t1 AT1G20560 30.287 383 232 10 192 556 96 461 1.60e-32 130
MS.gene75039.t1 AT3G16170 27.577 388 237 12 205 562 234 607 2.17e-32 132
MS.gene75039.t1 AT3G16910 28.861 395 234 11 189 556 181 555 7.99e-32 130
MS.gene75039.t1 AT2G17650 26.145 524 306 18 86 556 99 594 1.44e-31 129
MS.gene75039.t1 AT1G76290 25.502 498 326 16 86 556 52 531 2.90e-27 116
MS.gene75039.t1 AT1G30520 26.067 445 263 15 83 487 42 460 1.92e-25 110
MS.gene75039.t1 AT1G30520 26.067 445 263 15 83 487 42 460 1.92e-25 110
MS.gene75039.t1 AT1G64400 25.144 521 307 16 32 478 27 538 6.38e-25 109
MS.gene75039.t1 AT5G27600 26.945 527 295 17 27 478 58 569 9.93e-25 109
MS.gene75039.t1 AT5G36880 24.528 530 356 15 72 563 196 719 2.59e-24 108
MS.gene75039.t1 AT5G36880 24.528 530 356 15 72 563 146 669 3.04e-24 107
MS.gene75039.t1 AT5G36880 24.528 530 356 15 72 563 146 669 3.04e-24 107
MS.gene75039.t1 AT5G36880 24.528 530 356 15 72 563 146 669 3.04e-24 107
MS.gene75039.t1 AT5G36880 24.528 530 356 15 72 563 146 669 3.04e-24 107
MS.gene75039.t1 AT1G68270 36.709 158 89 2 409 556 363 519 7.60e-24 105
MS.gene75039.t1 AT4G11030 23.722 489 298 15 57 478 58 538 7.50e-23 103
MS.gene75039.t1 AT3G05970 30.395 329 171 11 197 478 252 569 5.43e-21 97.8
MS.gene75039.t1 AT1G49430 25.287 522 309 21 41 490 39 551 1.07e-20 96.7
MS.gene75039.t1 AT1G77590 27.920 351 179 15 206 492 100 440 4.10e-20 94.4
MS.gene75039.t1 AT4G23850 23.608 521 315 19 32 478 27 538 6.12e-20 94.4
MS.gene75039.t1 AT1G77590 27.920 351 179 15 206 492 246 586 6.67e-20 94.4
MS.gene75039.t1 AT3G23790 32.164 171 100 5 343 501 465 631 1.18e-14 77.8

Find 126 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTCTGCTTTACACAAAA+TGG 0.138296 6.3:-83334130 MS.gene75039:CDS
CTATTGGCTGTTCTGTATTT+AGG 0.170770 6.3:-83334045 MS.gene75039:CDS
TTGACATTGATGAGGTTATT+AGG 0.176901 6.3:-83333531 MS.gene75039:CDS
ACAGGGTAATAAATTGAATT+TGG 0.183276 6.3:+83334072 None:intergenic
GCCCTTATTGATTCTTCATC+TGG 0.217618 6.3:-83334198 MS.gene75039:CDS
TATCAAATACAAGGGATTTC+AGG 0.243292 6.3:-83330895 MS.gene75039:intron
GTTGAGTGATCATGTTGTTT+TGG 0.245364 6.3:+83334352 None:intergenic
TCATAGAAATCTTATTTCTA+TGG 0.256021 6.3:-83333710 MS.gene75039:CDS
ACGGCTGCATCGACTATTTC+AGG 0.272026 6.3:+83330723 None:intergenic
GGGTCAGTTGGAAGATTTCT+AGG 0.289970 6.3:+83334273 None:intergenic
ATTCACAACTATTCGTCAAT+AGG 0.296417 6.3:-83331811 MS.gene75039:CDS
ATGAAGGCAAAGGGTGTTAA+TGG 0.303488 6.3:-83333445 MS.gene75039:CDS
TTATTACCCTGTTATACTAT+TGG 0.314296 6.3:-83334061 MS.gene75039:CDS
AGAACAGCCAATAGTATAAC+AGG 0.320104 6.3:+83334054 None:intergenic
TGACATTGATGAGGTTATTA+GGG 0.322063 6.3:-83333530 MS.gene75039:CDS
CAGGCAGCTGCGGTGAGCTT+TGG 0.328932 6.3:-83331726 MS.gene75039:CDS
CAAAGCTCACCGCAGCTGCC+TGG 0.332403 6.3:+83331727 None:intergenic
TTGCCAATGTTTCATGTGTA+TGG 0.342668 6.3:-83333616 MS.gene75039:CDS
ACCCAGATGAAGAATCAATA+AGG 0.350199 6.3:+83334196 None:intergenic
GCTGGTATATTGTATTCATC+TGG 0.361976 6.3:-83333766 MS.gene75039:CDS
AAAGCTCACCGCAGCTGCCT+GGG 0.370228 6.3:+83331728 None:intergenic
TTCCCCAGTTTCTTCATCTT+CGG 0.374121 6.3:+83330559 None:intergenic
ACCTGTATAAAATCAACGTT+AGG 0.376743 6.3:+83333337 None:intergenic
AGCAATGCCTGAGCTGCTTT+CGG 0.384531 6.3:+83330267 None:intergenic
AGTGCCGAAGATGAAGAAAC+TGG 0.401295 6.3:-83330563 MS.gene75039:CDS
TGCTGCGGGATTATTGTCGT+TGG 0.401502 6.3:-83333581 MS.gene75039:CDS
ACCTTCCGGACCTTCTTGTA+TGG 0.403187 6.3:+83330335 None:intergenic
TTCACAACTATTCGTCAATA+GGG 0.405454 6.3:-83331810 MS.gene75039:CDS
TGTTGTTCCACCGATGTTGT+CGG 0.411176 6.3:-83333476 MS.gene75039:CDS
TGTTGGCGAAATTCGTAAAC+AGG 0.412030 6.3:-83333989 MS.gene75039:CDS
AAGGAAACAATGTCAAGAAA+AGG 0.413052 6.3:+83334252 None:intergenic
CCCTTATTGATTCTTCATCT+GGG 0.414327 6.3:-83334197 MS.gene75039:CDS
TCAGGATGGATATTTACATT+TGG 0.418131 6.3:-83330937 MS.gene75039:CDS
GTCAAGAAACTAGAGCTATT+AGG 0.418468 6.3:-83333922 MS.gene75039:CDS
TCAAAGGGTAGTTATTAAAC+AGG 0.419883 6.3:-83333797 MS.gene75039:CDS
CTATTCGTCAATAGGGTTGT+TGG 0.424322 6.3:-83331803 MS.gene75039:CDS
GACAACATCGGTGGAACAAC+AGG 0.427365 6.3:+83333478 None:intergenic
TGTTTAATAACTACCCTTTG+AGG 0.430394 6.3:+83333799 None:intergenic
GGTTTATCGCTCTTTGCTGC+GGG 0.430597 6.3:-83333595 MS.gene75039:CDS
TAACAACTTTGAGTAAGAAA+TGG 0.436153 6.3:+83334170 None:intergenic
CAGAAAATGAGAAGGATTTG+AGG 0.445513 6.3:-83333873 MS.gene75039:CDS
GCTGCGGGATTATTGTCGTT+GGG 0.447735 6.3:-83333580 MS.gene75039:CDS
CTCAACACCCTCACCCTCAT+TGG 0.448612 6.3:-83334335 MS.gene75039:CDS
TGCGGTGAGCTTTGGTTGAG+AGG 0.454034 6.3:-83331718 MS.gene75039:CDS
GCTTCTGCTTTACACAAAAT+GGG 0.455667 6.3:-83334129 MS.gene75039:CDS
CCCAGATGAAGAATCAATAA+GGG 0.467167 6.3:+83334197 None:intergenic
AATCAAATTTACCATAAAGA+AGG 0.470429 6.3:+83333824 None:intergenic
TTGCTTGACTTCTAAACTCT+AGG 0.476441 6.3:-83330249 None:intergenic
AAGCTCACCGCAGCTGCCTG+GGG 0.478646 6.3:+83331729 None:intergenic
TAAATTTGATTTGCCTCAAA+GGG 0.485047 6.3:-83333812 MS.gene75039:CDS
GCATTTGTTGTCAAGAAGGT+TGG 0.486407 6.3:-83330527 MS.gene75039:CDS
GTAAATTTGATTTGCCTCAA+AGG 0.487083 6.3:-83333813 MS.gene75039:CDS
ACATAATCGACCACATGCTT+CGG 0.487322 6.3:+83330491 None:intergenic
TTGTATTCATCTGGGACTAC+AGG 0.489553 6.3:-83333757 MS.gene75039:CDS
ATTTCGCCAACACTACTAAG+AGG 0.489624 6.3:+83334000 None:intergenic
AACACAGCTTCTAGATCAGC+AGG 0.500308 6.3:+83330756 None:intergenic
TTCTTGACAACAAATGCGAC+TGG 0.501806 6.3:+83330533 None:intergenic
AGATCCTCCGAAAGCAGCTC+AGG 0.501984 6.3:-83330274 MS.gene75039:CDS
CACAAAATGGGTGTTTCACA+AGG 0.502968 6.3:-83334117 MS.gene75039:CDS
CGGAGACCTTGGTATCTTGT+CGG 0.503203 6.3:+83330304 None:intergenic
TGGTTTATCGCTCTTTGCTG+CGG 0.507976 6.3:-83333596 MS.gene75039:CDS
TGTCGGTGAAGAACACCTTC+CGG 0.510625 6.3:+83330321 None:intergenic
TAAGTTGCAGAGTTTGAGAC+AGG 0.511530 6.3:-83333419 MS.gene75039:CDS
AGATACCAAGGTCTCCGATT+GGG 0.512248 6.3:-83330298 MS.gene75039:CDS
AGTCGCATTTGTTGTCAAGA+AGG 0.514135 6.3:-83330531 MS.gene75039:CDS
TTGCTCCATACAAGAAGGTC+CGG 0.515213 6.3:-83330340 MS.gene75039:CDS
CGGAGGCAAAAGTGGTAGAC+TGG 0.515561 6.3:-83331771 MS.gene75039:CDS
ATCTTCCCAATCGGAGACCT+TGG 0.515866 6.3:+83330293 None:intergenic
GCGGTGAGCTTTGGTTGAGA+GGG 0.517348 6.3:-83331717 MS.gene75039:CDS
TTGAATCCTCTTAGTAGTGT+TGG 0.520706 6.3:-83334006 MS.gene75039:CDS
AGGAAACAATGTCAAGAAAA+GGG 0.521407 6.3:+83334253 None:intergenic
CTGGTATATTGTATTCATCT+GGG 0.532782 6.3:-83333765 MS.gene75039:CDS
ATGTCAAGAAAAGGGTCAGT+TGG 0.533509 6.3:+83334261 None:intergenic
AAACCATACACATGAAACAT+TGG 0.533547 6.3:+83333613 None:intergenic
TCCAAACACGGAGGCAAAAG+TGG 0.534472 6.3:-83331779 MS.gene75039:CDS
GAAGCCATGGATTTGACTAA+AGG 0.537715 6.3:+83334147 None:intergenic
ATATCAACAATTGATAAAGA+TGG 0.537763 6.3:-83330993 MS.gene75039:CDS
AAAGATGGTTGGTTACATAC+AGG 0.537881 6.3:-83330978 MS.gene75039:CDS
GTTACCTTTAGTCAAATCCA+TGG 0.539728 6.3:-83334151 MS.gene75039:CDS
AAAGTGGTAGACTGGAACAA+TGG 0.541163 6.3:-83331763 MS.gene75039:CDS
CTCAGGATACTTGAATAATG+AGG 0.541417 6.3:-83331024 MS.gene75039:intron
TTCATATACTTACGCTGTAA+CGG 0.543086 6.3:+83330704 None:intergenic
TGCTTGACTTCTAAACTCTA+GGG 0.545589 6.3:-83330248 None:intergenic
ACACTACTAAGAGGATTCAA+TGG 0.545729 6.3:+83334009 None:intergenic
TTTCGGAGGATCTTCCCAAT+CGG 0.547034 6.3:+83330284 None:intergenic
AATCAACGTTAGGGAAAGCA+TGG 0.550452 6.3:+83333347 None:intergenic
GAAAGACATTATCAAATACA+AGG 0.550958 6.3:-83330904 MS.gene75039:CDS
GGTCGATTATGTTGCTGAGC+AGG 0.550976 6.3:-83330480 MS.gene75039:intron
CAACAATTGATAAAGATGGT+TGG 0.560181 6.3:-83330989 MS.gene75039:CDS
TTTGTGTAAAGCAGAAGCCA+TGG 0.560434 6.3:+83334134 None:intergenic
CCTGTATAAAATCAACGTTA+GGG 0.562718 6.3:+83333338 None:intergenic
GGCATTGACAATGAAGGCAA+AGG 0.569984 6.3:-83333455 MS.gene75039:CDS
GCATTGACAATGAAGGCAAA+GGG 0.570042 6.3:-83333454 MS.gene75039:CDS
GAGGAAATTTGACATTGATG+AGG 0.576756 6.3:-83333539 MS.gene75039:CDS
AACAGCTAGAAACACACACT+TGG 0.579086 6.3:+83333639 None:intergenic
ATTGTCAATGCCGACAACAT+CGG 0.579863 6.3:+83333466 None:intergenic
TGCTGTGCCAGAAAATGAGA+AGG 0.586565 6.3:-83333881 MS.gene75039:CDS
AAGATACCAAGGTCTCCGAT+TGG 0.589894 6.3:-83330299 MS.gene75039:CDS
AGTTTGAGACAGGTCTCTTG+CGG 0.592614 6.3:-83333409 MS.gene75039:CDS
GATGAATACCAATGAGGGTG+AGG 0.592922 6.3:+83334327 None:intergenic
GTTGTCGGCATTGACAATGA+AGG 0.595731 6.3:-83333461 MS.gene75039:CDS
GTGCCGAAGATGAAGAAACT+GGG 0.600776 6.3:-83330562 MS.gene75039:CDS
AGGGCTAAAACCCCATCATG+AGG 0.601023 6.3:+83334216 None:intergenic
AATGCCTGAGCTGCTTTCGG+AGG 0.604997 6.3:+83330270 None:intergenic
AGCTCACCGCAGCTGCCTGG+GGG 0.606825 6.3:+83331730 None:intergenic
ATTAAACAGGAAGATACTGC+TGG 0.608838 6.3:-83333784 MS.gene75039:CDS
CGTAAACAGGTTCAAGAGTG+TGG 0.611754 6.3:-83333976 MS.gene75039:CDS
AGGGTTGTTGGCTCCAAACA+CGG 0.614077 6.3:-83331791 MS.gene75039:CDS
GGGACTACAGGTGTGAGCAA+AGG 0.615067 6.3:-83333745 MS.gene75039:CDS
AAAGACATTATCAAATACAA+GGG 0.615550 6.3:-83330903 MS.gene75039:CDS
GTCAATGCCGACAACATCGG+TGG 0.615987 6.3:+83333469 None:intergenic
AGAGGGCCTTCTATTATGAG+AGG 0.618979 6.3:-83331700 MS.gene75039:intron
GCAGGTTGCTCCATACAAGA+AGG 0.622353 6.3:-83330345 MS.gene75039:intron
TCGACTGCAGTGGGAACACG+TGG 0.624008 6.3:-83331850 MS.gene75039:CDS
GCTCTACAGTCATTGTAATG+AGG 0.624765 6.3:-83333558 MS.gene75039:CDS
ATGACTGAGTCGACTGCAGT+GGG 0.649133 6.3:-83331859 MS.gene75039:CDS
GGGCTAAAACCCCATCATGA+GGG 0.653343 6.3:+83334217 None:intergenic
TCCATACAAGAAGGTCCGGA+AGG 0.659172 6.3:-83330336 MS.gene75039:CDS
TGTACTTTCTCCGAAGCATG+TGG 0.668913 6.3:-83330501 MS.gene75039:CDS
AATGACTGAGTCGACTGCAG+TGG 0.680151 6.3:-83331860 MS.gene75039:CDS
AAGAAACTAGAGCTATTAGG+TGG 0.680245 6.3:-83333919 MS.gene75039:CDS
TGCCGAAGATGAAGAAACTG+GGG 0.685738 6.3:-83330561 MS.gene75039:CDS
ATGAATACCAATGAGGGTGA+GGG 0.691317 6.3:+83334328 None:intergenic
GAACAGCCAATAGTATAACA+GGG 0.716419 6.3:+83334055 None:intergenic
TCTTCACCGACAAGATACCA+AGG 0.749835 6.3:-83330310 MS.gene75039:CDS
GTTGTTGGCTCCAAACACGG+AGG 0.795141 6.3:-83331788 MS.gene75039:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATACATTAATATTAG+AGG + chr6.3:83332004-83332023 None:intergenic 10.0%
!! AGAAGAAAAAAATAAAATAA+AGG + chr6.3:83334271-83334290 None:intergenic 10.0%
!! GAAGAAAAAAATAAAATAAA+GGG + chr6.3:83334270-83334289 None:intergenic 10.0%
!!! ATTAATGTATTTATTTTTAG+AGG - chr6.3:83332009-83332028 MS.gene75039:intron 10.0%
!!! TTTATTTTATTTTTTTCTTC+TGG - chr6.3:83334270-83334289 MS.gene75039:CDS 10.0%
!! AGATATTAAAAAGTAAAACA+CGG - chr6.3:83332984-83333003 MS.gene75039:intron 15.0%
!!! GTTTGATTAACAATTTTAAT+TGG + chr6.3:83333579-83333598 None:intergenic 15.0%
!!! TTATTTTTCTTTGTTATTGT+TGG - chr6.3:83331405-83331424 MS.gene75039:intron 15.0%
!! AAAGACATTATCAAATACAA+GGG - chr6.3:83333734-83333753 MS.gene75039:CDS 20.0%
!! AATCAAATTTACCATAAAGA+AGG + chr6.3:83330816-83330835 None:intergenic 20.0%
!! ATATAGAGCAAATATAGTAA+AGG + chr6.3:83333141-83333160 None:intergenic 20.0%
!! ATATCAACAATTGATAAAGA+TGG - chr6.3:83333644-83333663 MS.gene75039:CDS 20.0%
!! ATTAAGACTATTCTATTCAA+AGG + chr6.3:83331332-83331351 None:intergenic 20.0%
!! GATATTAAAAAGTAAAACAC+GGG - chr6.3:83332985-83333004 MS.gene75039:intron 20.0%
!! TATAGAGCAAATATAGTAAA+GGG + chr6.3:83333140-83333159 None:intergenic 20.0%
!! TTAATAGCAACTGTTATATA+GGG - chr6.3:83331487-83331506 MS.gene75039:intron 20.0%
!! TTTAATAGCAACTGTTATAT+AGG - chr6.3:83331486-83331505 MS.gene75039:intron 20.0%
!!! AGATATTGTTTATTTTGATC+AGG - chr6.3:83333682-83333701 MS.gene75039:CDS 20.0%
!!! AGTTTTTTTAACCTTCTTTA+TGG - chr6.3:83330802-83330821 MS.gene75039:intron 20.0%
!!! TCATAGAAATCTTATTTCTA+TGG - chr6.3:83330927-83330946 MS.gene75039:CDS 20.0%
!!! TCATTAACATTTTACTGATA+AGG + chr6.3:83333374-83333393 None:intergenic 20.0%
! AAACTGAAGTAAATTTCTCT+TGG - chr6.3:83333461-83333480 MS.gene75039:CDS 25.0%
! AACTAACATGATATTTCTCA+AGG + chr6.3:83333192-83333211 None:intergenic 25.0%
! ACAGGGTAATAAATTGAATT+TGG + chr6.3:83330568-83330587 None:intergenic 25.0%
! ATAGAGCAAATATAGTAAAG+GGG + chr6.3:83333139-83333158 None:intergenic 25.0%
! CTTACAGCTATTAATAATCT+AGG + chr6.3:83332734-83332753 None:intergenic 25.0%
! GAAAAATGATGTAACATTTG+AGG + chr6.3:83334048-83334067 None:intergenic 25.0%
! GAAAGACATTATCAAATACA+AGG - chr6.3:83333733-83333752 MS.gene75039:CDS 25.0%
! TAACAACTTTGAGTAAGAAA+TGG + chr6.3:83330470-83330489 None:intergenic 25.0%
! TTATAATCAAATGTCCAAAG+AGG + chr6.3:83334025-83334044 None:intergenic 25.0%
! TTATTACCCTGTTATACTAT+TGG - chr6.3:83330576-83330595 MS.gene75039:intron 25.0%
!! TTTTTACCTCTCATAATAGA+AGG + chr6.3:83332946-83332965 None:intergenic 25.0%
!! TTTTTGATGAATACCAATGA+GGG + chr6.3:83330318-83330337 None:intergenic 25.0%
!!! ATTGTTTATTTTGATCAGGA+TGG - chr6.3:83333686-83333705 MS.gene75039:CDS 25.0%
!!! ATTTGTTATCGCTTAACTAA+AGG - chr6.3:83333159-83333178 MS.gene75039:intron 25.0%
!!! TAAATTTGATTTGCCTCAAA+GGG - chr6.3:83330825-83330844 MS.gene75039:intron 25.0%
!!! TATGAAAATAGCTTTGACTA+GGG + chr6.3:83332555-83332574 None:intergenic 25.0%
!!! TGTAAGATTGTTTCTTTTCA+GGG - chr6.3:83332748-83332767 MS.gene75039:intron 25.0%
!!! TTATGAAAATAGCTTTGACT+AGG + chr6.3:83332556-83332575 None:intergenic 25.0%
!!! TTATGATCTAGAATTTGTTG+TGG + chr6.3:83332672-83332691 None:intergenic 25.0%
!!! TTTTATTTTTTTCTTCTGGC+AGG - chr6.3:83334274-83334293 MS.gene75039:CDS 25.0%
AAAACACGGGAGTAATATAA+AGG - chr6.3:83332998-83333017 MS.gene75039:intron 30.0%
AAACCATACACATGAAACAT+TGG + chr6.3:83331027-83331046 None:intergenic 30.0%
AAATAAGCTGAACAGAACTA+AGG - chr6.3:83331680-83331699 MS.gene75039:intron 30.0%
AACTCTTTCCTTTAATTCTC+AGG - chr6.3:83333596-83333615 MS.gene75039:CDS 30.0%
AAGGAAAAATGTCAAAGCTA+GGG - chr6.3:83331699-83331718 MS.gene75039:intron 30.0%
AAGGAAACAATGTCAAGAAA+AGG + chr6.3:83330388-83330407 None:intergenic 30.0%
AATAAGTTGTTTAGCCAAAC+AGG + chr6.3:83331513-83331532 None:intergenic 30.0%
ACCTGTATAAAATCAACGTT+AGG + chr6.3:83331303-83331322 None:intergenic 30.0%
AGAGTTTGAAAACAATACAC+AGG - chr6.3:83332150-83332169 MS.gene75039:intron 30.0%
AGGAAACAATGTCAAGAAAA+GGG + chr6.3:83330387-83330406 None:intergenic 30.0%
ATTCACAACTATTCGTCAAT+AGG - chr6.3:83332826-83332845 MS.gene75039:intron 30.0%
CAACAATTGATAAAGATGGT+TGG - chr6.3:83333648-83333667 MS.gene75039:CDS 30.0%
CATTGGTATTCATCAAAAAC+TGG - chr6.3:83330319-83330338 MS.gene75039:CDS 30.0%
CCTGTATAAAATCAACGTTA+GGG + chr6.3:83331302-83331321 None:intergenic 30.0%
CTGGTATATTGTATTCATCT+GGG - chr6.3:83330872-83330891 MS.gene75039:intron 30.0%
GTTTGGCTAAACAACTTATT+TGG - chr6.3:83331513-83331532 MS.gene75039:intron 30.0%
TAAGGAAAAATGTCAAAGCT+AGG - chr6.3:83331698-83331717 MS.gene75039:intron 30.0%
TACTAAAATTAGTCCCACAT+CGG - chr6.3:83332127-83332146 MS.gene75039:intron 30.0%
TATCAAATACAAGGGATTTC+AGG - chr6.3:83333742-83333761 MS.gene75039:CDS 30.0%
TCAAAGGGTAGTTATTAAAC+AGG - chr6.3:83330840-83330859 MS.gene75039:intron 30.0%
TCAAGCAATCATATAAACGA+TGG + chr6.3:83331375-83331394 None:intergenic 30.0%
TCAAGTATCCTGAGAATTAA+AGG + chr6.3:83333607-83333626 None:intergenic 30.0%
TCAGGATGGATATTTACATT+TGG - chr6.3:83333700-83333719 MS.gene75039:CDS 30.0%
TGACATTGATGAGGTTATTA+GGG - chr6.3:83331107-83331126 MS.gene75039:intron 30.0%
TGTTTAATAACTACCCTTTG+AGG + chr6.3:83330841-83330860 None:intergenic 30.0%
TTCACAACTATTCGTCAATA+GGG - chr6.3:83332827-83332846 MS.gene75039:intron 30.0%
TTCATATACTTACGCTGTAA+CGG + chr6.3:83333936-83333955 None:intergenic 30.0%
TTGACATTGATGAGGTTATT+AGG - chr6.3:83331106-83331125 MS.gene75039:intron 30.0%
! GTTTTTGATGAATACCAATG+AGG + chr6.3:83330319-83330338 None:intergenic 30.0%
! TTTTCCCATCTAGTGAAAAA+AGG + chr6.3:83333444-83333463 None:intergenic 30.0%
!! ATTGTTTCTTTTCAGGGTTA+TGG - chr6.3:83332754-83332773 MS.gene75039:intron 30.0%
!! CTGTAAGATTGTTTCTTTTC+AGG - chr6.3:83332747-83332766 MS.gene75039:intron 30.0%
!! GATTTCAGGTATCTACTTTT+AGG - chr6.3:83333756-83333775 MS.gene75039:CDS 30.0%
!! GTAAATTTGATTTGCCTCAA+AGG - chr6.3:83330824-83330843 MS.gene75039:intron 30.0%
!! TCTAGTTTCTTGACATTTTC+AGG + chr6.3:83330709-83330728 None:intergenic 30.0%
!!! CTTTTTTTTTGACTCGAGTT+CGG + chr6.3:83332436-83332455 None:intergenic 30.0%
!!! TTGAGTGATCATGTTGTTTT+GGG + chr6.3:83330287-83330306 None:intergenic 30.0%
AAGAAACTAGAGCTATTAGG+TGG - chr6.3:83330718-83330737 MS.gene75039:CDS 35.0%
AATCAACCTCATGCAAATCT+AGG + chr6.3:83333049-83333068 None:intergenic 35.0%
AATTGTTTGAGCTTGTCTAC+TGG + chr6.3:83332609-83332628 None:intergenic 35.0%
ACACTACTAAGAGGATTCAA+TGG + chr6.3:83330631-83330650 None:intergenic 35.0%
ACCCAGATGAAGAATCAATA+AGG + chr6.3:83330444-83330463 None:intergenic 35.0%
AGAACAGCCAATAGTATAAC+AGG + chr6.3:83330586-83330605 None:intergenic 35.0%
AGTTCACGAACAACTCAATT+CGG + chr6.3:83332404-83332423 None:intergenic 35.0%
ATAGCGAACAACAACAATCA+AGG - chr6.3:83333418-83333437 MS.gene75039:CDS 35.0%
ATCAACCTCATGCAAATCTA+GGG + chr6.3:83333048-83333067 None:intergenic 35.0%
ATGATATTTCTCAAGGACAC+AGG + chr6.3:83333185-83333204 None:intergenic 35.0%
ATTAAACAGGAAGATACTGC+TGG - chr6.3:83330853-83330872 MS.gene75039:intron 35.0%
CAGAAAATGAGAAGGATTTG+AGG - chr6.3:83330764-83330783 MS.gene75039:CDS 35.0%
CAGCAAGACAAGAAAAAAGA+AGG + chr6.3:83333548-83333567 None:intergenic 35.0%
CCCAGATGAAGAATCAATAA+GGG + chr6.3:83330443-83330462 None:intergenic 35.0%
CGAACTCGAGTCAAAAAAAA+AGG - chr6.3:83332434-83332453 MS.gene75039:intron 35.0%
CTCAGGATACTTGAATAATG+AGG - chr6.3:83333613-83333632 MS.gene75039:CDS 35.0%
GAACAGCCAATAGTATAACA+GGG + chr6.3:83330585-83330604 None:intergenic 35.0%
GACAATTGTCTCATTGAACT+TGG - chr6.3:83331768-83331787 MS.gene75039:CDS 35.0%
GAGGAAATTTGACATTGATG+AGG - chr6.3:83331098-83331117 MS.gene75039:intron 35.0%
GCTGGTATATTGTATTCATC+TGG - chr6.3:83330871-83330890 MS.gene75039:intron 35.0%
GCTTCTGCTTTACACAAAAT+GGG - chr6.3:83330508-83330527 MS.gene75039:CDS 35.0%
GTCAAGAAACTAGAGCTATT+AGG - chr6.3:83330715-83330734 MS.gene75039:intron 35.0%
GTTACCTTTAGTCAAATCCA+TGG - chr6.3:83330486-83330505 MS.gene75039:CDS 35.0%
GTTTGAAAACAATACACAGG+AGG - chr6.3:83332153-83332172 MS.gene75039:intron 35.0%
TTGAATCCTCTTAGTAGTGT+TGG - chr6.3:83330631-83330650 MS.gene75039:intron 35.0%
TTGCCAATGTTTCATGTGTA+TGG - chr6.3:83331021-83331040 MS.gene75039:CDS 35.0%
! AAAGATGGTTGGTTACATAC+AGG - chr6.3:83333659-83333678 MS.gene75039:CDS 35.0%
! AGAAAAAAGAAGGTACAGGT+AGG + chr6.3:83333538-83333557 None:intergenic 35.0%
! ATAAGTTTTGCGAGACTGTT+TGG + chr6.3:83332585-83332604 None:intergenic 35.0%
! ATGAGGGTGTGAAAAAATGA+AGG + chr6.3:83330407-83330426 None:intergenic 35.0%
! ATGCAAATCTAGGGTAAGAT+TGG + chr6.3:83333039-83333058 None:intergenic 35.0%
! CTATTGGCTGTTCTGTATTT+AGG - chr6.3:83330592-83330611 MS.gene75039:intron 35.0%
! CTCAAATCCTTCTCATTTTC+TGG + chr6.3:83330766-83330785 None:intergenic 35.0%
! GACAAGAAAAAAGAAGGTAC+AGG + chr6.3:83333542-83333561 None:intergenic 35.0%
! TAAGTTTTGCGAGACTGTTT+GGG + chr6.3:83332584-83332603 None:intergenic 35.0%
! TGTATATAGTTCGACTCGAT+TGG - chr6.3:83331860-83331879 MS.gene75039:CDS 35.0%
! TTTGCATGAGGTTGATTCAA+TGG - chr6.3:83333052-83333071 MS.gene75039:intron 35.0%
!! AAGAGGCACTTTAGAAGATT+AGG + chr6.3:83334008-83334027 None:intergenic 35.0%
!! AATCTTCTAAAGTGCCTCTT+TGG - chr6.3:83334008-83334027 MS.gene75039:CDS 35.0%
!! ATTTTCTGGCACAGCAATAA+TGG + chr6.3:83330752-83330771 None:intergenic 35.0%
!! CCCTTATTGATTCTTCATCT+GGG - chr6.3:83330440-83330459 MS.gene75039:intron 35.0%
!! GTCGTTTTCATAAGCTATCT+TGG - chr6.3:83331646-83331665 MS.gene75039:intron 35.0%
!! GTTGAGTGATCATGTTGTTT+TGG + chr6.3:83330288-83330307 None:intergenic 35.0%
!! TTTTCTGGCACAGCAATAAT+GGG + chr6.3:83330751-83330770 None:intergenic 35.0%
!!! AAGGCCTTTTTTCACTAGAT+GGG - chr6.3:83333437-83333456 MS.gene75039:CDS 35.0%
!!! ATTTTTTCACACCCTCATGA+TGG - chr6.3:83330409-83330428 MS.gene75039:intron 35.0%
!!! CCCTAACGTTGATTTTATAC+AGG - chr6.3:83331299-83331318 MS.gene75039:intron 35.0%
!!! TTTTTTCACACCCTCATGAT+GGG - chr6.3:83330410-83330429 MS.gene75039:intron 35.0%
AAAAATGTCAAAGCTAGGGC+TGG - chr6.3:83331703-83331722 MS.gene75039:CDS 40.0%
AAAACAATTGTACCGTAGCG+CGG + chr6.3:83332225-83332244 None:intergenic 40.0%
AAAGTGGTAGACTGGAACAA+TGG - chr6.3:83332874-83332893 MS.gene75039:intron 40.0%
AACAGCTAGAAACACACACT+TGG + chr6.3:83331001-83331020 None:intergenic 40.0%
AATCAACGTTAGGGAAAGCA+TGG + chr6.3:83331293-83331312 None:intergenic 40.0%
ACATAATCGACCACATGCTT+CGG + chr6.3:83334149-83334168 None:intergenic 40.0%
ACTGTTATATAGGGCCTGTT+TGG - chr6.3:83331496-83331515 MS.gene75039:intron 40.0%
ATGAATACCAATGAGGGTGA+GGG + chr6.3:83330312-83330331 None:intergenic 40.0%
ATGTCAAGAAAAGGGTCAGT+TGG + chr6.3:83330379-83330398 None:intergenic 40.0%
ATTGTCAATGCCGACAACAT+CGG + chr6.3:83331174-83331193 None:intergenic 40.0%
ATTTCGCCAACACTACTAAG+AGG + chr6.3:83330640-83330659 None:intergenic 40.0%
CACAAAATGGGTGTTTCACA+AGG - chr6.3:83330520-83330539 MS.gene75039:CDS 40.0%
CTATTCGTCAATAGGGTTGT+TGG - chr6.3:83332834-83332853 MS.gene75039:intron 40.0%
CTTCATCTTCGGCACTAATA+TGG + chr6.3:83334070-83334089 None:intergenic 40.0%
GAAGCCATGGATTTGACTAA+AGG + chr6.3:83330493-83330512 None:intergenic 40.0%
GAGCAAATATAGTAAAGGGG+AGG + chr6.3:83333136-83333155 None:intergenic 40.0%
GCTCTACAGTCATTGTAATG+AGG - chr6.3:83331079-83331098 MS.gene75039:intron 40.0%
GGCTTCTGCTTTACACAAAA+TGG - chr6.3:83330507-83330526 MS.gene75039:CDS 40.0%
GTTGCACTACAACACTGATA+AGG + chr6.3:83333313-83333332 None:intergenic 40.0%
GTTGTGGATGTGAACATCAA+TGG + chr6.3:83332656-83332675 None:intergenic 40.0%
GTTTCGAACTATTGTCGAGT+TGG + chr6.3:83331741-83331760 None:intergenic 40.0%
TACAGGTAGGCTAAGGAATA+AGG + chr6.3:83333525-83333544 None:intergenic 40.0%
TCTTACCCTAGATTTGCATG+AGG - chr6.3:83333040-83333059 MS.gene75039:intron 40.0%
TGTTGGCGAAATTCGTAAAC+AGG - chr6.3:83330648-83330667 MS.gene75039:intron 40.0%
TTCCCCAGTTTCTTCATCTT+CGG + chr6.3:83334081-83334100 None:intergenic 40.0%
TTCTTGACAACAAATGCGAC+TGG + chr6.3:83334107-83334126 None:intergenic 40.0%
TTTGTGTAAAGCAGAAGCCA+TGG + chr6.3:83330506-83330525 None:intergenic 40.0%
! GAGCAGGTTCTTCTTTTGAT+TGG - chr6.3:83334173-83334192 MS.gene75039:CDS 40.0%
! GCATTGACAATGAAGGCAAA+GGG - chr6.3:83331183-83331202 MS.gene75039:intron 40.0%
! GTTTTCAAACTCTCCGATGT+GGG + chr6.3:83332143-83332162 None:intergenic 40.0%
! TAAGTTGCAGAGTTTGAGAC+AGG - chr6.3:83331218-83331237 MS.gene75039:intron 40.0%
! TGTTTTCAAACTCTCCGATG+TGG + chr6.3:83332144-83332163 None:intergenic 40.0%
! TTGTATTCATCTGGGACTAC+AGG - chr6.3:83330880-83330899 MS.gene75039:intron 40.0%
! TTTTTCACACCCTCATGATG+GGG - chr6.3:83330411-83330430 MS.gene75039:intron 40.0%
!! AAAATAGCTTTGACTAGGGC+TGG + chr6.3:83332551-83332570 None:intergenic 40.0%
!! AGTCGCATTTGTTGTCAAGA+AGG - chr6.3:83334106-83334125 MS.gene75039:CDS 40.0%
!! ATGAAGGCAAAGGGTGTTAA+TGG - chr6.3:83331192-83331211 MS.gene75039:intron 40.0%
!! GAACTATTGTCGAGTTGGTT+CGG + chr6.3:83331736-83331755 None:intergenic 40.0%
!! GCATTTGTTGTCAAGAAGGT+TGG - chr6.3:83334110-83334129 MS.gene75039:CDS 40.0%
!! GCCCTTATTGATTCTTCATC+TGG - chr6.3:83330439-83330458 MS.gene75039:intron 40.0%
!!! CAAGGCCTTTTTTCACTAGA+TGG - chr6.3:83333436-83333455 MS.gene75039:CDS 40.0%
!!! GGGAGGTAGTTTTGACATAA+AGG + chr6.3:83333119-83333138 None:intergenic 40.0%
AACACAGCTTCTAGATCAGC+AGG + chr6.3:83333884-83333903 None:intergenic 45.0%
AAGATACCAAGGTCTCCGAT+TGG - chr6.3:83334338-83334357 MS.gene75039:CDS 45.0%
AGAGGGCCTTCTATTATGAG+AGG - chr6.3:83332937-83332956 MS.gene75039:intron 45.0%
AGATACCAAGGTCTCCGATT+GGG - chr6.3:83334339-83334358 MS.gene75039:CDS 45.0%
CAGCTCAAGTTCAGCTCATT+TGG + chr6.3:83331802-83331821 None:intergenic 45.0%
CGTAAACAGGTTCAAGAGTG+TGG - chr6.3:83330661-83330680 MS.gene75039:intron 45.0%
GATGAATACCAATGAGGGTG+AGG + chr6.3:83330313-83330332 None:intergenic 45.0%
GGGTCAGTTGGAAGATTTCT+AGG + chr6.3:83330367-83330386 None:intergenic 45.0%
GTGCCGAAGATGAAGAAACT+GGG - chr6.3:83334075-83334094 MS.gene75039:CDS 45.0%
TCTTCACCGACAAGATACCA+AGG - chr6.3:83334327-83334346 MS.gene75039:CDS 45.0%
TGCCGAAGATGAAGAAACTG+GGG - chr6.3:83334076-83334095 MS.gene75039:CDS 45.0%
TGCTGTGCCAGAAAATGAGA+AGG - chr6.3:83330756-83330775 MS.gene75039:CDS 45.0%
TGGTTTATCGCTCTTTGCTG+CGG - chr6.3:83331041-83331060 MS.gene75039:intron 45.0%
TGTAATAAGCTACCGCGCTA+CGG - chr6.3:83332210-83332229 MS.gene75039:intron 45.0%
TGTACTTTCTCCGAAGCATG+TGG - chr6.3:83334136-83334155 MS.gene75039:CDS 45.0%
TGTTGTTCCACCGATGTTGT+CGG - chr6.3:83331161-83331180 MS.gene75039:intron 45.0%
TTGCTCCATACAAGAAGGTC+CGG - chr6.3:83334297-83334316 MS.gene75039:CDS 45.0%
TTTCGGAGGATCTTCCCAAT+CGG + chr6.3:83334356-83334375 None:intergenic 45.0%
! AAGAAGGTACAGGTAGGCTA+AGG + chr6.3:83333532-83333551 None:intergenic 45.0%
! ACAACTCAATTCGGCTCGTT+AGG + chr6.3:83332395-83332414 None:intergenic 45.0%
! AGTGCCGAAGATGAAGAAAC+TGG - chr6.3:83334074-83334093 MS.gene75039:CDS 45.0%
! AGTTTGAGACAGGTCTCTTG+CGG - chr6.3:83331228-83331247 MS.gene75039:intron 45.0%
! CATGAGGTTGATTCAATGGC+TGG - chr6.3:83333056-83333075 MS.gene75039:intron 45.0%
!! AAAGGTTTGAGTTGCTGCAG+TGG + chr6.3:83333101-83333120 None:intergenic 45.0%
!! GGCATTGACAATGAAGGCAA+AGG - chr6.3:83331182-83331201 MS.gene75039:intron 45.0%
!! GTTGTCGGCATTGACAATGA+AGG - chr6.3:83331176-83331195 MS.gene75039:intron 45.0%
!!! AATGGTACTTTTTTGCCCCC+AGG - chr6.3:83332892-83332911 MS.gene75039:intron 45.0%
!!! ATTTTTTTTAACAAATTAAA+AGG - chr6.3:83332338-83332357 MS.gene75039:intron 5.0%
AATGACTGAGTCGACTGCAG+TGG - chr6.3:83332777-83332796 MS.gene75039:intron 50.0%
ACCTTCCGGACCTTCTTGTA+TGG + chr6.3:83334305-83334324 None:intergenic 50.0%
AGGGCTAAAACCCCATCATG+AGG + chr6.3:83330424-83330443 None:intergenic 50.0%
ATCTTCCCAATCGGAGACCT+TGG + chr6.3:83334347-83334366 None:intergenic 50.0%
ATGACTGAGTCGACTGCAGT+GGG - chr6.3:83332778-83332797 MS.gene75039:intron 50.0%
CAGTGGTGTGACTAACGTTC+AGG + chr6.3:83333084-83333103 None:intergenic 50.0%
CGGAGACCTTGGTATCTTGT+CGG + chr6.3:83334336-83334355 None:intergenic 50.0%
GACAACATCGGTGGAACAAC+AGG + chr6.3:83331162-83331181 None:intergenic 50.0%
GAGTCGAGCTCAGATGAGTT+CGG - chr6.3:83332508-83332527 MS.gene75039:intron 50.0%
GCAGGTTGCTCCATACAAGA+AGG - chr6.3:83334292-83334311 MS.gene75039:CDS 50.0%
GCTGCGGGATTATTGTCGTT+GGG - chr6.3:83331057-83331076 MS.gene75039:intron 50.0%
GGGCTAAAACCCCATCATGA+GGG + chr6.3:83330423-83330442 None:intergenic 50.0%
GGTCGATTATGTTGCTGAGC+AGG - chr6.3:83334157-83334176 MS.gene75039:CDS 50.0%
GGTTTATCGCTCTTTGCTGC+GGG - chr6.3:83331042-83331061 MS.gene75039:intron 50.0%
TCCAAACACGGAGGCAAAAG+TGG - chr6.3:83332858-83332877 MS.gene75039:intron 50.0%
TCCATACAAGAAGGTCCGGA+AGG - chr6.3:83334301-83334320 MS.gene75039:CDS 50.0%
TGCTGCGGGATTATTGTCGT+TGG - chr6.3:83331056-83331075 MS.gene75039:intron 50.0%
TGTCGGTGAAGAACACCTTC+CGG + chr6.3:83334319-83334338 None:intergenic 50.0%
! AGCAATGCCTGAGCTGCTTT+CGG + chr6.3:83334373-83334392 None:intergenic 50.0%
!! ACCACTTTTGCCTCCGTGTT+TGG + chr6.3:83332862-83332881 None:intergenic 50.0%
!! ACGGCTGCATCGACTATTTC+AGG + chr6.3:83333917-83333936 None:intergenic 50.0%
!! AGGGTTGTTGGCTCCAAACA+CGG - chr6.3:83332846-83332865 MS.gene75039:intron 50.0%
AGATCCTCCGAAAGCAGCTC+AGG - chr6.3:83334363-83334382 MS.gene75039:CDS 55.0%
CGGAGGCAAAAGTGGTAGAC+TGG - chr6.3:83332866-83332885 MS.gene75039:intron 55.0%
CTCAACACCCTCACCCTCAT+TGG - chr6.3:83330302-83330321 MS.gene75039:CDS 55.0%
GGGACTACAGGTGTGAGCAA+AGG - chr6.3:83330892-83330911 MS.gene75039:intron 55.0%
GTCAATGCCGACAACATCGG+TGG + chr6.3:83331171-83331190 None:intergenic 55.0%
! AATGCCTGAGCTGCTTTCGG+AGG + chr6.3:83334370-83334389 None:intergenic 55.0%
! GCGGTGAGCTTTGGTTGAGA+GGG - chr6.3:83332920-83332939 MS.gene75039:intron 55.0%
! GGTGCAGCGCTTTTGAGCAT+AGG - chr6.3:83331249-83331268 MS.gene75039:intron 55.0%
! TGCGGTGAGCTTTGGTTGAG+AGG - chr6.3:83332919-83332938 MS.gene75039:intron 55.0%
!! GTTGTTGGCTCCAAACACGG+AGG - chr6.3:83332849-83332868 MS.gene75039:intron 55.0%
AAAGCTCACCGCAGCTGCCT+GGG + chr6.3:83332912-83332931 None:intergenic 60.0%
TCGACTGCAGTGGGAACACG+TGG - chr6.3:83332787-83332806 MS.gene75039:intron 60.0%
! TTTTTGCCCCCAGGCAGCTG+CGG - chr6.3:83332901-83332920 MS.gene75039:intron 60.0%
AAGCTCACCGCAGCTGCCTG+GGG + chr6.3:83332911-83332930 None:intergenic 65.0%
CAAAGCTCACCGCAGCTGCC+TGG + chr6.3:83332913-83332932 None:intergenic 65.0%
CAGGCAGCTGCGGTGAGCTT+TGG - chr6.3:83332911-83332930 MS.gene75039:intron 65.0%
AGCTCACCGCAGCTGCCTGG+GGG + chr6.3:83332910-83332929 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 83330250 83334409 83330250 ID=MS.gene75039
chr6.3 mRNA 83330250 83334409 83330250 ID=MS.gene75039.t1;Parent=MS.gene75039
chr6.3 exon 83333339 83334409 83333339 ID=MS.gene75039.t1.exon1;Parent=MS.gene75039.t1
chr6.3 CDS 83333339 83334409 83333339 ID=cds.MS.gene75039.t1;Parent=MS.gene75039.t1
chr6.3 exon 83331701 83331890 83331701 ID=MS.gene75039.t1.exon2;Parent=MS.gene75039.t1
chr6.3 CDS 83331701 83331890 83331701 ID=cds.MS.gene75039.t1;Parent=MS.gene75039.t1
chr6.3 exon 83330896 83331041 83330896 ID=MS.gene75039.t1.exon3;Parent=MS.gene75039.t1
chr6.3 CDS 83330896 83331041 83330896 ID=cds.MS.gene75039.t1;Parent=MS.gene75039.t1
chr6.3 exon 83330717 83330784 83330717 ID=MS.gene75039.t1.exon4;Parent=MS.gene75039.t1
chr6.3 CDS 83330717 83330784 83330717 ID=cds.MS.gene75039.t1;Parent=MS.gene75039.t1
chr6.3 exon 83330481 83330583 83330481 ID=MS.gene75039.t1.exon5;Parent=MS.gene75039.t1
chr6.3 CDS 83330481 83330583 83330481 ID=cds.MS.gene75039.t1;Parent=MS.gene75039.t1
chr6.3 exon 83330250 83330363 83330250 ID=MS.gene75039.t1.exon6;Parent=MS.gene75039.t1
chr6.3 CDS 83330250 83330363 83330250 ID=cds.MS.gene75039.t1;Parent=MS.gene75039.t1
Gene Sequence

>MS.gene75039

ATGGCTTCTGCTGCAAATTTAAACTGTGAAATCACCCAAAACAACATGATCACTCAACACCCTCACCCTCATTGGTATTCATCAAAAACTGGAATTTACAACAGTATACACACTCCTAGAAATCTTCCAACTGACCCTTTTCTTGACATTGTTTCCTTCATTTTTTCACACCCTCATGATGGGGTTTTAGCCCTTATTGATTCTTCATCTGGGTCTTCCATTTCTTACTCAAAGTTGTTACCTTTAGTCAAATCCATGGCTTCTGCTTTACACAAAATGGGTGTTTCACAAGGTGATGTTGTTTTGCTTCTACTTCCAAATTCAATTTATTACCCTGTTATACTATTGGCTGTTCTGTATTTAGGTGCTGTTTTTACACCATTGAATCCTCTTAGTAGTGTTGGCGAAATTCGTAAACAGGTTCAAGAGTGTGGTGTGAGTTTTGCTTTTACTATACCTGAAAATGTCAAGAAACTAGAGCTATTAGGTGGCATTAATCCCATTATTGCTGTGCCAGAAAATGAGAAGGATTTGAGGAATGAGTGTTTCTCAAGTTTTTTTAACCTTCTTTATGGTAAATTTGATTTGCCTCAAAGGGTAGTTATTAAACAGGAAGATACTGCTGGTATATTGTATTCATCTGGGACTACAGGTGTGAGCAAAGGAGTTGTTTTAACTCATAGAAATCTTATTTCTATGGTTGAGCTTTTTGTGAGATTTGAAGCTTCTCAATATGATTACTCTTGTTCCAAGTGTGTGTTTCTAGCTGTTTTGCCAATGTTTCATGTGTATGGTTTATCGCTCTTTGCTGCGGGATTATTGTCGTTGGGCTCTACAGTCATTGTAATGAGGAAATTTGACATTGATGAGGTTATTAGGGTGATTGACAAATATAATGTTACACACTTTCCTGTTGTTCCACCGATGTTGTCGGCATTGACAATGAAGGCAAAGGGTGTTAATGGAAGTAAGTTGCAGAGTTTGAGACAGGTCTCTTGCGGTGCAGCGCTTTTGAGCATAGGAGTTATTAGTAGTTTTGTCCATGCTTTCCCTAACGTTGATTTTATACAGGTAAAGAACCTTTGAATAGAATAGTCTTAATTAGAGAATGCAAGTAATGCTCCATCGTTTATATGATTGCTTGAGTTAATATAGTTATTTTTCTTTGTTATTGTTGGTAGTAGCTAAATGCTGATTATTTCATTTAATTATGAGAGAACGTGTGAGCTTTAAAAATTTAATAGCAACTGTTATATAGGGCCTGTTTGGCTAAACAACTTATTTGGTGCTTATAGCATAAGCGCTTATCATAATAAGCACTTCTATATACACATACATAAGCTATTTCTATAGCAAAAAATAAAATAAAGTAAAATTGTTTTTGTATATGTTAAAAGTCGTTTTCATAAGCTATCTTGGATAACTTATAAAAATAAGCTGAACAGAACTAAGGAAAAATGTCAAAGCTAGGGCTGGCAATGAACCGAACCAACTCGACAATAGTTCGAAACTCGATTCGACAATTGTCTCATTGAACTTGGTTCATGAACCAAATGAGCTGAACTTGAGCTGAAAATTAAGTTCGTTAAATAAACGAGCTGAACTTGAGTTGTATATAGTTCGACTCGATTGGTTCATGAGCTGACTCGATAATATATATATTTATTTATTTGTGTGTGTTAGTTTAGTAAAATTTAGTAAAGTACAAGCTTAAATGTTAAAAGACGAAATATGTAATTTATTACAAGATTCCTCTAATATTAATGTATTTATTTTTAGAGGAATTATTACTAATTTAATTAACGATAATTATAATAAAAGAGAAAAAAAGAAGCTAATAATATACTTGTGCATACGTATAACTATACAAATATGTGTACTAAAATTAGTCCCACATCGGAGAGTTTGAAAACAATACACAGGAGGAGTAGATATAAAATGAGAAGTGCGCTGCTTTACATGTAATAAGCTACCGCGCTACGGTACAATTGTTTTACTACAATTGTTTTAGTTTTATTATTTATAATAAAGTAATACTACTTTTTTACTTTAGTAGTATTAAGAGTTTTATTTTATTTTATTTAGTTCATTTTTTTTAACAAATTAAAAGGTTAAATTTTTTGAAAAAAAAAATTAGTTGAACCTAACGAGCCGAATTGAGTTGTTCGTGAACTTGACACGAGCCGAACTCGAGTCAAAAAAAAAGGTTCGTAACGAACTCGAGTCGAGTTTCGAGCTGAGTCAATTCTTATCGAGTCGAGTCGAGCTCAGATGAGTTCGGTTCGACTCGACTCATTTCCAGCCCTAGTCAAAGCTATTTTCATAAGTTCTCCCAAACAGTCTCGCAAAACTTATGCCAGTAGACAAGCTCAAACAATTTGTTTTCATAATACTCTTTTTGTGCCATTGATGTTCACATCCACAACAAATTCTAGATCATAAAAGTTGAACTTTATTTGTTTATGATAATAATGTTGTTTTCCTAGATTATTAATAGCTGTAAGATTGTTTCTTTTCAGGGTTATGGAATGACTGAGTCGACTGCAGTGGGAACACGTGGCTTCAATACTGAAAAGATTCACAACTATTCGTCAATAGGGTTGTTGGCTCCAAACACGGAGGCAAAAGTGGTAGACTGGAACAATGGTACTTTTTTGCCCCCAGGCAGCTGCGGTGAGCTTTGGTTGAGAGGGCCTTCTATTATGAGAGGTAAAAAATCTGTATTTTTCTGAATAGATATTAAAAAGTAAAACACGGGAGTAATATAAAGGTCTTGTCTATAGTAGCCAATCTTACCCTAGATTTGCATGAGGTTGATTCAATGGCTGGAACCTGAACGTTAGTCACACCACTGCAGCAACTCAAACCTTTATGTCAAAACTACCTCCCCTTTACTATATTTGCTCTATATTTGTTATCGCTTAACTAAAGGCCTGTGTCCTTGAGAAATATCATGTTAGTTTAGTAGACATTTTATTCTTCTAGAGTGATGCTATACACTCATCTGTTGTTGTAGTGCAACTATTGACGCGAATTCAGTTGAAAGATACATATACATCTCCTTATCAGTGTTGTAGTGCAACTATTGACGCGAATTCAGTTGAAAGATACATATACATCTCCTTATCAGTAAAATGTTAATGAAAGTTTTCTTTCAATTTAGTTTAGATAGCGAACAACAACAATCAAGGCCTTTTTTCACTAGATGGGAAAACTGAAGTAAATTTCTCTTGGAGTCAACTGTTTCATTGCTATAATAACTTTTGTTTCTGCCTTATTCCTTAGCCTACCTGTACCTTCTTTTTTCTTGTCTTGCTGCTATTTGTCCAATTAAAATTGTTAATCAAACTCTTTCCTTTAATTCTCAGGATACTTGAATAATGAGGAAGCTACTATATCAACAATTGATAAAGATGGTTGGTTACATACAGGAGATATTGTTTATTTTGATCAGGATGGATATTTACATTTGGCTGATCGCTTGAAAGACATTATCAAATACAAGGGATTTCAGGTATCTACTTTTAGGTTTTTTAAATTTTATAAAGAAAAGTGATGATAGATTAACGAGAAATGCAGAATTTTACTGAAACAAACACTTTGTATGACACATGATCTGTTACAGATTGCTCCTGCTGATCTAGAAGCTGTGTTGATTTTGCATCCTGAAATAGTCGATGCAGCCGTTACAGCGTAAGTATATGAACACTTCATTTATGTCTTCGCTTCTGCAATCTATAGAAAATGCAGTCATTCCTAATCTTCTAAAGTGCCTCTTTGGACATTTGATTATAACCTCAAATGTTACATCATTTTTCCATATTAGTGCCGAAGATGAAGAAACTGGGGAAATTCCAGTCGCATTTGTTGTCAAGAAGGTTGGAAGTGTACTTTCTCCGAAGCATGTGGTCGATTATGTTGCTGAGCAGGTTCTTCTTTTGATTGGACAGACATGATTTTTATGATATTTGAATTGATATTACTACTTGAATCAATGTCATGCTTTTCACATTTTAACCCTTTATTTTATTTTTTTCTTCTGGCAGGTTGCTCCATACAAGAAGGTCCGGAAGGTGTTCTTCACCGACAAGATACCAAGGTCTCCGATTGGGAAGATCCTCCGAAAGCAGCTCAGGCATTGCTTGACTTCTAAACTCTAG

Protein sequence

>MS.gene75039.t1

MASAANLNCEITQNNMITQHPHPHWYSSKTGIYNSIHTPRNLPTDPFLDIVSFIFSHPHDGVLALIDSSSGSSISYSKLLPLVKSMASALHKMGVSQGDVVLLLLPNSIYYPVILLAVLYLGAVFTPLNPLSSVGEIRKQVQECGVSFAFTIPENVKKLELLGGINPIIAVPENEKDLRNECFSSFFNLLYGKFDLPQRVVIKQEDTAGILYSSGTTGVSKGVVLTHRNLISMVELFVRFEASQYDYSCSKCVFLAVLPMFHVYGLSLFAAGLLSLGSTVIVMRKFDIDEVIRVIDKYNVTHFPVVPPMLSALTMKAKGVNGSKLQSLRQVSCGAALLSIGVISSFVHAFPNVDFIQGYGMTESTAVGTRGFNTEKIHNYSSIGLLAPNTEAKVVDWNNGTFLPPGSCGELWLRGPSIMRGYLNNEEATISTIDKDGWLHTGDIVYFDQDGYLHLADRLKDIIKYKGFQIAPADLEAVLILHPEIVDAAVTAAEDEETGEIPVAFVVKKVGSVLSPKHVVDYVAEQVAPYKKVRKVFFTDKIPRSPIGKILRKQLRHCLTSKL