AlfalfaGEDB | MS.gene72869

M. sativa cultivar XinJiangDaYe / MS.gene72869

KEGG: K01904
GO: GO:0003674 GO:0003824
PFAM: PF00501.31 PF13193.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72869.t1	XP_003612659.1	94.2	555	32	0	1	555	1	555	3.60E-298	1033.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72869.t1	Q84P24	60.1	541	214	2	17	555	22	562	6.7e-184	645.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72869.t1	G7K877	94.2	555	32	0	1	555	1	555	2.6e-298	1033.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050020	MS.gene72869	0.851053	1.14E-60	-1.69E-46
MS.gene050584	MS.gene72869	0.847555	1.07E-59	-1.69E-46
MS.gene050585	MS.gene72869	0.840794	7.02E-58	-1.69E-46
MS.gene050587	MS.gene72869	0.851049	1.14E-60	-1.69E-46
MS.gene050807	MS.gene72869	0.80167	8.07E-49	-1.69E-46
MS.gene05143	MS.gene72869	0.820693	5.99E-53	-1.69E-46
MS.gene05157	MS.gene72869	0.811535	6.67E-51	-1.69E-46
MS.gene051789	MS.gene72869	0.839064	1.98E-57	-1.69E-46
MS.gene052142	MS.gene72869	0.818543	1.86E-52	-1.69E-46
MS.gene053074	MS.gene72869	0.820118	8.12E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene007715	MS.gene72869	PPI
MS.gene028660	MS.gene72869	PPI
MS.gene049798	MS.gene72869	PPI
MS.gene049799	MS.gene72869	PPI
MS.gene09098	MS.gene72869	PPI
MS.gene35477	MS.gene72869	PPI
MS.gene72869	MS.gene33554	PPI
MS.gene72869	MS.gene31229	PPI
MS.gene72869	MS.gene018428	PPI
MS.gene72869	MS.gene35476	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72869.t1	MTR_5g027480	94.234	555	32	0	1	555	1	555	0.0	1065
MS.gene72869.t1	MTR_5g027500	81.162	568	94	2	1	555	1	568	0.0	901
MS.gene72869.t1	MTR_4g077900	82.008	478	84	1	80	555	1	478	0.0	795
MS.gene72869.t1	MTR_1g026310	44.220	545	291	4	20	555	20	560	3.11e-158	463
MS.gene72869.t1	MTR_8g039720	44.746	552	280	8	20	555	17	559	1.24e-153	451
MS.gene72869.t1	MTR_1g090737	44.712	539	280	9	20	547	27	558	1.62e-144	429
MS.gene72869.t1	MTR_4g057730	41.418	536	299	8	20	547	6	534	4.98e-136	406
MS.gene72869.t1	MTR_2g095510	41.002	539	301	7	25	555	10	539	1.34e-134	402
MS.gene72869.t1	MTR_1g063120	39.891	549	299	8	20	547	6	544	2.82e-134	402
MS.gene72869.t1	MTR_3g088870	42.540	496	267	7	58	547	67	550	1.28e-130	393

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72869.t1	AT4G19010	59.963	547	214	4	10	551	12	558	0.0	660
MS.gene72869.t1	AT1G20510	45.865	532	265	7	27	547	17	536	9.57e-162	472
MS.gene72869.t1	AT1G20480	42.987	549	290	6	20	555	27	565	8.47e-153	450
MS.gene72869.t1	AT1G20500	42.569	545	294	8	20	555	16	550	1.41e-145	431
MS.gene72869.t1	AT4G05160	41.068	543	304	6	23	555	8	544	2.09e-139	415
MS.gene72869.t1	AT5G63380	40.835	551	302	7	12	547	9	550	1.53e-136	408
MS.gene72869.t1	AT5G38120	42.105	532	284	9	27	547	24	542	8.78e-136	405
MS.gene72869.t1	AT1G20510	44.754	467	235	7	27	482	17	471	1.66e-134	400
MS.gene72869.t1	AT1G20510	43.848	447	228	7	27	462	17	451	9.06e-124	372
MS.gene72869.t1	AT5G38120	40.509	511	280	9	20	519	17	514	7.92e-122	369

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Find 117 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAGTTACCAGAAATC+AGG	0.431755	5.1:+17986650	None:intergenic
AAACCATATAAATGGAACAT+CGG	0.588130	5.1:+17986439	None:intergenic
AAAGAATTTATCAAATACAA+GGG	0.580755	5.1:-17985460	MS.gene72869:CDS
AAAGATGGTTGGCTACATAC+TGG	0.442873	5.1:-17985535	MS.gene72869:CDS
AAAGTGGTAGATTGGAAAAG+TGG	0.560810	5.1:-17985915	MS.gene72869:CDS
AAATGAAAAGGATTTGAAGC+AGG	0.517247	5.1:-17986695	MS.gene72869:CDS
AAATTAATAGGAATGCCTAA+TGG	0.516888	5.1:+17986727	None:intergenic
AACGATACAACATCGAGAAA+AGG	0.426403	5.1:+17987072	None:intergenic
AAGATTCCGAGGTCTGTGAC+TGG	0.468807	5.1:-17984932	MS.gene72869:CDS
AATCAACATTAGGGAAAGCT+TGG	0.471169	5.1:+17986173	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAAGTTACCAGAAATC+AGG	+	chr5.1:17985425-17985444	None:intergenic	30.0%
AGAGCGATAAACCATATAAA+TGG	+	chr5.1:17985644-17985663	None:intergenic	30.0%
ATGTCGACAATTGATAAAGA+TGG	-	chr5.1:17986522-17986541	MS.gene72869:CDS	30.0%
ATTTCATCAACACTACTAAG+AGG	+	chr5.1:17985255-17985274	None:intergenic	30.0%
CATAACACCTAATAGTACAA+TGG	+	chr5.1:17985202-17985221	None:intergenic	30.0%
CTTAGGATACTTGAATAATG+AGG	-	chr5.1:17986491-17986510	MS.gene72869:CDS	30.0%
GGAAAATGATGAAACACTTA+AGG	+	chr5.1:17986853-17986872	None:intergenic	30.0%
GTGTGTACTATTGTAAATTC+CGG	+	chr5.1:17984956-17984975	None:intergenic	30.0%
GTTACCTTTAGTCAAATCAA+TGG	-	chr5.1:17985101-17985120	MS.gene72869:intron	30.0%
TACTATCCCATTGTACTATT+AGG	-	chr5.1:17985192-17985211	MS.gene72869:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	17984883	17987211	17984883	ID=MS.gene72869
chr5.1	mRNA	17984883	17987211	17984883	ID=MS.gene72869.t1;Parent=MS.gene72869
chr5.1	exon	17986165	17987211	17986165	ID=MS.gene72869.t1.exon1;Parent=MS.gene72869.t1
chr5.1	CDS	17986165	17987211	17986165	ID=cds.MS.gene72869.t1;Parent=MS.gene72869.t1
chr5.1	exon	17985853	17986042	17985853	ID=MS.gene72869.t1.exon2;Parent=MS.gene72869.t1
chr5.1	CDS	17985853	17986042	17985853	ID=cds.MS.gene72869.t1;Parent=MS.gene72869.t1
chr5.1	exon	17985453	17985598	17985453	ID=MS.gene72869.t1.exon3;Parent=MS.gene72869.t1
chr5.1	CDS	17985453	17985598	17985453	ID=cds.MS.gene72869.t1;Parent=MS.gene72869.t1
chr5.1	exon	17985306	17985373	17985306	ID=MS.gene72869.t1.exon4;Parent=MS.gene72869.t1
chr5.1	CDS	17985306	17985373	17985306	ID=cds.MS.gene72869.t1;Parent=MS.gene72869.t1
chr5.1	exon	17985110	17985212	17985110	ID=MS.gene72869.t1.exon5;Parent=MS.gene72869.t1
chr5.1	CDS	17985110	17985212	17985110	ID=cds.MS.gene72869.t1;Parent=MS.gene72869.t1
chr5.1	exon	17984883	17984996	17984883	ID=MS.gene72869.t1.exon6;Parent=MS.gene72869.t1
chr5.1	CDS	17984883	17984996	17984883	ID=cds.MS.gene72869.t1;Parent=MS.gene72869.t1

Gene Sequence

>MS.gene72869

ATGGCTGCAAATTTCAACTATGACATGCCACAAAATATCATCACTCACCCTCCTTGGTATTCACCAAAAACCGGAATTTACAATAGTACACACTCTCCTAGGAGCCTTCCGACCGACCCTTTTCTCGATGTTGTATCGTTCATTTTTTCTCACCCTCATGATGGGGTTTTAGCCCTTATTGATTCCTCTTCTGGGACTTCCATTTCTTACTCAAAGTTGTTACCTTTAGTCAAATCAATGGCTTCTGGTCTTCATAAAATGGGAGTTTCACAAGGTGACCTTGTTTTGCTTTTACTTCCAAATTCAATTTACTATCCCATTGTACTATTAGGTGTTATGTACCTAGGTGCTGTTGTTACACCATTGAATCCTCTTAGTAGTGTTGATGAAATTCGTAAGCAGGTTAATGACTGTGGTGTGAGTTTTGCTTTTACTATACCTGAAAATGTTAAGAAATTAGAACCATTAGGCATTCCTATTAATTTTGTGCCAGAAAATGAAAAGGATTTGAAGCAGGCTTGTTTCTCGGATTTTTTTAACCTGATTTCTGGTAACTTTGTTTTGCCTCAAAAGCCGGTTATTAAACAAGAAGACACTGCTGCTATATTGTTTTCTTCTGGTACTACAGGTGTGAGCAAAGGAGTTGTTTTAACTCATAGAAATCTTATTGCTATGGTTGAGCTTTTTGTGAGGTTTGAAGCTTCTCAATATGAATACTCTAGTTCCAAAAATGTGTATCTAGCTGTTTTGCCGATGTTCCATTTATATGGTTTATCGCTCTTTGCTACGGGATTATTGTCATTGGGTTCTACAATCGTTGTAATGCGGAAATTTGACATTGACGAGACTATTAGGGTGATCGATAAATATAATGTTACACATTTTCATGTTGTTCCACCGATATTGTCGGCATTGACAGCGAAGGCAAAGGGTGTAAATGGAAGTAAGTTGCAGAGTTTGAGACAGGTCGGTTCTAGTGCAGCGCCTTTAAGCACAAAAGCTATAAATGATTTTGTCCAAGCTTTCCCTAATGTTGATTTTATACAGGTAAAAACCTCAGAATAAAATAGTCTTATTTAAAGAATGCAAGTCATGATCCATCATTCAAATAATGTTGTTTTCCTAGATTTTTTTTAAGGATGTGCAGATGTAAAATTGTTTCTTTTTAGGTTTATGGAATGACTGAGTCGGGTGCATTAGGAGCATGCGGTTTCAATACAGAAAAATTTCGCAACTATTCTTCACTAGGGTTGTTAGCTCCAAACATGGAGGCAAAAGTGGTAGATTGGAAAAGTGGTGCTTTTTTGCCACCAGGCAGAAGTGGTGAGCTTTGGTTGAGAGGTCCTTCAATTATGAAAGGTAAAAATAATCTGCATTTTTTATGAATAGATAATAAATATAAATACTAAAAGGATAACATGGTAATATAAAGGTTTTATCTATTGTGTGGAATCTTAATCTACATTAGCATGAGATTGATTCAATGATTTCAACTGTTTTGTTGCTGTAACTTTTGTTTCTTTCTTATTCCTCAAGCCACTTGAACCTTTTCTGCCTGTCTTGTTGCTATTCCAATTGAAATTATTAATCAAACTTTTTCCTTAATTTCTTAGGATACTTGAATAATGAGGAAGCTACAATGTCGACAATTGATAAAGATGGTTGGCTACATACTGGAGATATTGTTTATTTTGATCAAGATGGATATTTATATTTGTCTGACCGCTTGAAAGAATTTATCAAATACAAGGGCTTTCAGGTATCAATTTATTTTACAGTTTATTTTTAATCAATTTGTATGCAATATGTTCTTATGTATATCACACATGCTGTTACAGATTCCTCCTGCTGATTTAGAAGCTGTGCTAATTTTGCATCCTGAAATAGTGGATGTTGCTGTTACAGGGCAAGTATATGAACACTTCATTTATGTCTTCTAAGATGCCTCTTTAGACATTTAAATATAACCTTAAGTGTTTCATCATTTTCCATATATCAGTGCCAAGGATGAAGAAGCTGGGGAGATTCCAGTGGCATTTGTGGTCAAGAAGGTTGGAAGTGTACTATCTCCAAAGGATGTTATCGATTTCGTTGCTAAGCAGGTTCTTCTTTATAAGACAGACATGAGATCTATGATATTTGAATTAATGTCACTACTTGAATCAATGTTAGTATTGGAATGGTTTTCAAATTTTAACCCTTTTTTTGTTGGCAGGTTGCTCCATTCAAGAAGGTTCGCAAAGTGGTCTTCACCGACAAGATTCCGAGGTCTGTGACTGGGAAGATCCTCCGAAAGCAACTCAGAAACTGCTTGCCTTCTAAACTCTAA

Protein sequence

>MS.gene72869.t1

MAANFNYDMPQNIITHPPWYSPKTGIYNSTHSPRSLPTDPFLDVVSFIFSHPHDGVLALIDSSSGTSISYSKLLPLVKSMASGLHKMGVSQGDLVLLLLPNSIYYPIVLLGVMYLGAVVTPLNPLSSVDEIRKQVNDCGVSFAFTIPENVKKLEPLGIPINFVPENEKDLKQACFSDFFNLISGNFVLPQKPVIKQEDTAAILFSSGTTGVSKGVVLTHRNLIAMVELFVRFEASQYEYSSSKNVYLAVLPMFHLYGLSLFATGLLSLGSTIVVMRKFDIDETIRVIDKYNVTHFHVVPPILSALTAKAKGVNGSKLQSLRQVGSSAAPLSTKAINDFVQAFPNVDFIQVYGMTESGALGACGFNTEKFRNYSSLGLLAPNMEAKVVDWKSGAFLPPGRSGELWLRGPSIMKGYLNNEEATMSTIDKDGWLHTGDIVYFDQDGYLYLSDRLKEFIKYKGFQIPPADLEAVLILHPEIVDVAVTGAKDEEAGEIPVAFVVKKVGSVLSPKDVIDFVAKQVAPFKKVRKVVFTDKIPRSVTGKILRKQLRNCLPSKL