AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85287


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTTGCTTGGTCCTCTTCC+AGG 0.183340 2.3:+3636103 None:intergenic
GTTACCTGATCACAGTAATT+TGG 0.220828 2.3:+3635860 None:intergenic
AAGAGCATGAACAAGATATT+TGG 0.260261 2.3:-3636461 MS.gene85287:CDS
GAAAATCCATATCTATTTAA+TGG 0.277620 2.3:-3637077 MS.gene85287:CDS
TTCTTGAAGGATAATAATTT+AGG 0.289596 2.3:-3636037 MS.gene85287:intron
GCTTCAAATGTAATAATGTT+AGG 0.296688 2.3:+3635597 None:intergenic
AGATGTCGAGCCACGATATT+CGG 0.298526 2.3:-3638477 MS.gene85287:CDS
CTCAAATCCGATCAATTAAT+CGG 0.338994 2.3:-3636289 MS.gene85287:CDS
GATGTCGAGCCACGATATTC+GGG 0.340840 2.3:-3638476 MS.gene85287:CDS
AGAAGGAGATACTATTACTT+TGG 0.348174 2.3:-3638444 MS.gene85287:CDS
TGACCCCATCAACACTAAAA+AGG 0.352827 2.3:+3636318 None:intergenic
AGTATTCAACTGTTTACCTT+TGG 0.392464 2.3:-3636381 MS.gene85287:CDS
GTTGACATAACTGTTCCTAA+TGG 0.396734 2.3:-3638208 MS.gene85287:CDS
ATAATGTTAGGTTTCAAATC+AGG 0.401417 2.3:+3635609 None:intergenic
AAGTCACCATTAAATAGATA+TGG 0.408912 2.3:+3637071 None:intergenic
AATGGTGACTTTGTAGATAG+AGG 0.410819 2.3:-3637059 MS.gene85287:CDS
TGCTCCAAATTACTGTGATC+AGG 0.411289 2.3:-3635864 MS.gene85287:intron
CAAATTTGTCAAAATGTTTG+CGG 0.411891 2.3:-3636405 MS.gene85287:CDS
GAAAATGATGAATGATTTCA+AGG 0.418810 2.3:-3638411 MS.gene85287:CDS
CACCCATCGCCACGCTTGCT+TGG 0.419484 2.3:+3636091 None:intergenic
AGGTGCTTCAAATCGAATAA+AGG 0.429933 2.3:+3635629 None:intergenic
TTATGTGTCTTACCTTCATC+AGG 0.430537 2.3:+3636254 None:intergenic
TAAGCCATTGGCTTAACATC+AGG 0.430731 2.3:+3635102 None:intergenic
GGAAAACATGTTACTGTTTG+TGG 0.443618 2.3:-3638187 MS.gene85287:CDS
TATTCGGGATCAAGAATAGA+AGG 0.444289 2.3:-3638461 MS.gene85287:CDS
GGACCAAGCAAGCGTGGCGA+TGG 0.448883 2.3:-3636094 MS.gene85287:CDS
CCTCTTCCAGGGAGAGATTG+TGG 0.467154 2.3:+3636115 None:intergenic
TTGGTGAGGATGTTACAAAA+AGG 0.470459 2.3:-3636060 MS.gene85287:CDS
CACAAAACCGATTAATTGAT+CGG 0.472508 2.3:+3636282 None:intergenic
GAACAGAAGTGCTTGGATAG+AGG 0.488821 2.3:-3638389 MS.gene85287:CDS
GCTTGCTTGGTCCTCTTCCA+GGG 0.507675 2.3:+3636104 None:intergenic
TTTAAGTGCATGTCTCCATC+TGG 0.511692 2.3:-3636999 MS.gene85287:intron
CCACAATCTCTCCCTGGAAG+AGG 0.518654 2.3:-3636115 MS.gene85287:CDS
AACAGAAGTGCTTGGATAGA+GGG 0.518754 2.3:-3638388 MS.gene85287:intron
CATTATTACATTTGAAGCAG+TGG 0.519521 2.3:-3635592 MS.gene85287:intron
TTTCAAGGAACAGAAGTGCT+TGG 0.526048 2.3:-3638396 MS.gene85287:CDS
GACCAAGCAAGCGTGGCGAT+GGG 0.539781 2.3:-3636093 MS.gene85287:CDS
AAGTTGTTTGCATAAGCCAT+TGG 0.545433 2.3:+3635090 None:intergenic
TTGTGGCGATGTGCATGGTC+AGG 0.553831 2.3:-3638170 MS.gene85287:intron
GGTTGATGCATGACTTGCTA+TGG 0.557053 2.3:-3636144 MS.gene85287:CDS
TTGTTTATCACATGAGCCAA+AGG 0.562219 2.3:+3636365 None:intergenic
ATTTCCTCTAGCTATATACA+TGG 0.570325 2.3:+3636493 None:intergenic
ACAGTTATGTCAACAAGAGA+AGG 0.573846 2.3:+3638217 None:intergenic
AGTGATCCACAATCTCTCCC+TGG 0.590132 2.3:-3636121 MS.gene85287:CDS
TCAGCCATGTATATAGCTAG+AGG 0.595379 2.3:-3636497 MS.gene85287:intron
ACTGTTTGTGGCGATGTGCA+TGG 0.597060 2.3:-3638175 MS.gene85287:CDS
ATCTCATAAATCAAAGCACA+AGG 0.599543 2.3:-3635930 MS.gene85287:CDS
ACACCCTGATGTTAAGCCAA+TGG 0.605052 2.3:-3635106 MS.gene85287:CDS
GGAAGAGGACCAAGCAAGCG+TGG 0.607947 2.3:-3636100 MS.gene85287:CDS
AAGCCATTGGCTTAACATCA+GGG 0.608784 2.3:+3635103 None:intergenic
ATTCTTGATCCCGAATATCG+TGG 0.612151 2.3:+3638467 None:intergenic
TGTGTCTTACCTTCATCAGG+AGG 0.622526 2.3:+3636257 None:intergenic
ATTGGCTTAACATCAGGGTG+TGG 0.628926 2.3:+3635108 None:intergenic
TTTATGCAGAAGGGTAACAA+AGG 0.652175 2.3:-3635654 MS.gene85287:intron
GGTTATGAGATTCAACATGA+CGG 0.684432 2.3:-3635908 MS.gene85287:CDS
TCTCATAAATCAAAGCACAA+GGG 0.729815 2.3:-3635929 MS.gene85287:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTATTAAAATTTGTC+AGG + chr2.3:3636170-3636189 None:intergenic 10.0%
!!! TGTTAGTTAATATTTTATAT+GGG - chr2.3:3635800-3635819 MS.gene85287:intron 10.0%
!!! TTGTTAGTTAATATTTTATA+TGG - chr2.3:3635799-3635818 MS.gene85287:intron 10.0%
!!! TTTTTTCCAAATAATTAATA+CGG + chr2.3:3636659-3636678 None:intergenic 10.0%
!! ATATAAGAAAAAATCAATGA+TGG + chr2.3:3635518-3635537 None:intergenic 15.0%
!! CATGAAAAATAAAATTGAAA+GGG + chr2.3:3636387-3636406 None:intergenic 15.0%
!! GTATTAATTATTTGGAAAAA+AGG - chr2.3:3636658-3636677 MS.gene85287:intron 15.0%
!! TACTTGACTAAAAAAAAAAA+GGG - chr2.3:3635964-3635983 MS.gene85287:intron 15.0%
!! TCATGAAAAATAAAATTGAA+AGG + chr2.3:3636388-3636407 None:intergenic 15.0%
!!! ATTTTTACTAAAAATGGTAA+AGG - chr2.3:3636226-3636245 MS.gene85287:intron 15.0%
!!! GTTAGTTAATATTTTATATG+GGG - chr2.3:3635801-3635820 MS.gene85287:intron 15.0%
!!! TTTTTCCAAATAATTAATAC+GGG + chr2.3:3636658-3636677 None:intergenic 15.0%
!! AAAAATAAAATTGAAAGGGT+TGG + chr2.3:3636383-3636402 None:intergenic 20.0%
!! AAATGGAAATAAATTCAACA+AGG + chr2.3:3636322-3636341 None:intergenic 20.0%
!! AAGAATGTATAATATATGCA+GGG + chr2.3:3636100-3636119 None:intergenic 20.0%
!! AATAAATTAAGCATCTAATC+AGG + chr2.3:3636894-3636913 None:intergenic 20.0%
!! ACATGTATAATCAGAATAAA+TGG + chr2.3:3636339-3636358 None:intergenic 20.0%
!! CTACTTGACTAAAAAAAAAA+AGG - chr2.3:3635963-3635982 MS.gene85287:intron 20.0%
!! GAAAATCCATATCTATTTAA+TGG - chr2.3:3636469-3636488 MS.gene85287:CDS 20.0%
!! TCTATAAACTATATGACTTA+CGG - chr2.3:3636708-3636727 MS.gene85287:intron 20.0%
!! TCTCAGAAAATGTATAAATA+TGG + chr2.3:3636253-3636272 None:intergenic 20.0%
!! TTATAGAATAGCAAGATAAT+AGG + chr2.3:3635623-3635642 None:intergenic 20.0%
!! TTATTCTGATTATACATGTT+TGG - chr2.3:3636340-3636359 MS.gene85287:CDS 20.0%
!! TTCTTGAAGGATAATAATTT+AGG - chr2.3:3637509-3637528 MS.gene85287:intron 20.0%
!! TTTGTTTATGTATCTATGTT+TGG - chr2.3:3637370-3637389 MS.gene85287:intron 20.0%
!!! ATATTTATACATTTTCTGAG+AGG - chr2.3:3636252-3636271 MS.gene85287:intron 20.0%
!!! TACAATACAAAGAAGTATTA+AGG + chr2.3:3637348-3637367 None:intergenic 20.0%
!!! TACTTAATTTCTTATTTCAC+TGG - chr2.3:3637552-3637571 MS.gene85287:intron 20.0%
! AACATAGATACATAGAAAGA+AGG + chr2.3:3637731-3637750 None:intergenic 25.0%
! AAGTCACCATTAAATAGATA+TGG + chr2.3:3636478-3636497 None:intergenic 25.0%
! AATTTCTTTGACCATTTATG+TGG - chr2.3:3635721-3635740 MS.gene85287:intron 25.0%
! AGAATGTATAATATATGCAG+GGG + chr2.3:3636099-3636118 None:intergenic 25.0%
! ATAATGCATAATTTATGCAG+GGG - chr2.3:3635877-3635896 MS.gene85287:CDS 25.0%
! ATAATGTTAGGTTTCAAATC+AGG + chr2.3:3637940-3637959 None:intergenic 25.0%
! ATATAATGAAACCTAAGAAG+AGG + chr2.3:3636826-3636845 None:intergenic 25.0%
! ATATCTTCATTCAATTTGTG+AGG - chr2.3:3638357-3638376 MS.gene85287:intron 25.0%
! CAAATTTGTCAAAATGTTTG+CGG - chr2.3:3637141-3637160 MS.gene85287:intron 25.0%
! GAAAATGATGAATGATTTCA+AGG - chr2.3:3635135-3635154 MS.gene85287:intron 25.0%
! GAAATTAAGTATCAAACCAA+TGG + chr2.3:3637543-3637562 None:intergenic 25.0%
! GAAGAATGTATAATATATGC+AGG + chr2.3:3636101-3636120 None:intergenic 25.0%
! GATAATGCATAATTTATGCA+GGG - chr2.3:3635876-3635895 MS.gene85287:CDS 25.0%
! GCTTCAAATGTAATAATGTT+AGG + chr2.3:3637952-3637971 None:intergenic 25.0%
! TAAAATTTGTCAGGAATAGA+AGG + chr2.3:3636161-3636180 None:intergenic 25.0%
! TCTTTCTATGTATCTATGTT+TGG - chr2.3:3637731-3637750 MS.gene85287:intron 25.0%
! TTCTTTGTTACGTAGATATT+TGG - chr2.3:3635472-3635491 MS.gene85287:intron 25.0%
! TTTATTTACACTTTGATCAC+AGG - chr2.3:3635579-3635598 MS.gene85287:intron 25.0%
! TTTCGCAAATAATAAACCAA+GGG + chr2.3:3635424-3635443 None:intergenic 25.0%
!! AATTTAGGTATGTTTTCCAT+TGG - chr2.3:3637524-3637543 MS.gene85287:intron 25.0%
!! AGAATCAGTGTTGTTAAATA+TGG - chr2.3:3638086-3638105 MS.gene85287:intron 25.0%
!! CACTTCAATAAAAGTACAAA+CGG + chr2.3:3635218-3635237 None:intergenic 25.0%
!! GAACTCATACATTTTAAATG+CGG - chr2.3:3636037-3636056 MS.gene85287:intron 25.0%
!! GAATCAGTGTTGTTAAATAT+GGG - chr2.3:3638087-3638106 MS.gene85287:intron 25.0%
!! GATTTTGTTGCAAACAAAAA+AGG - chr2.3:3635292-3635311 MS.gene85287:intron 25.0%
!! TTTTCGCAAATAATAAACCA+AGG + chr2.3:3635425-3635444 None:intergenic 25.0%
!!! AACAAGATATTTGGTTTTGA+GGG - chr2.3:3637094-3637113 MS.gene85287:CDS 25.0%
!!! CTAAAGGTAGATCATTTTTT+TGG - chr2.3:3635993-3636012 MS.gene85287:intron 25.0%
!!! TCAATAATGCTTATTTTGTG+TGG - chr2.3:3636941-3636960 MS.gene85287:intron 25.0%
!!! TGAATATTTTTGAGCTCAAT+GGG - chr2.3:3636434-3636453 MS.gene85287:CDS 25.0%
!!! TTGAATATTTTTGAGCTCAA+TGG - chr2.3:3636433-3636452 MS.gene85287:CDS 25.0%
!!! TTTTGTTTGCAACAAAATCT+TGG + chr2.3:3635291-3635310 None:intergenic 25.0%
AAAAAAAGGGTCAGATCTAA+AGG - chr2.3:3635977-3635996 MS.gene85287:intron 30.0%
AAATGTATTTGCATTTGTCC+TGG - chr2.3:3635244-3635263 MS.gene85287:intron 30.0%
AATTGTTGCTAGTAACTTCA+AGG - chr2.3:3635446-3635465 MS.gene85287:intron 30.0%
ACATTAATATCATAAGCGTG+TGG + chr2.3:3637792-3637773 None:intergenic 30.0%
AGAAGGAGATACTATTACTT+TGG - chr2.3:3635102-3635121 MS.gene85287:CDS 30.0%
AGTATTCAACTGTTTACCTT+TGG - chr2.3:3637165-3637184 MS.gene85287:intron 30.0%
ATCAGGATATGTATACTTCA+TGG + chr2.3:3637862-3637881 None:intergenic 30.0%
ATCTATGTTTGGTATGTGTA+GGG - chr2.3:3637381-3637400 MS.gene85287:intron 30.0%
ATCTCATAAATCAAAGCACA+AGG - chr2.3:3637616-3637635 MS.gene85287:intron 30.0%
ATTTCCTCTAGCTATATACA+TGG + chr2.3:3637056-3637075 None:intergenic 30.0%
CACAAAACCGATTAATTGAT+CGG + chr2.3:3637267-3637286 None:intergenic 30.0%
CTCAAATCCGATCAATTAAT+CGG - chr2.3:3637257-3637276 MS.gene85287:intron 30.0%
GAAGTCCCGTATTAATTATT+TGG - chr2.3:3636650-3636669 MS.gene85287:intron 30.0%
GCATAAAACAATGGAAAATC+AGG + chr2.3:3637879-3637898 None:intergenic 30.0%
GCTAGAGAAATTTACCTTAA+AGG + chr2.3:3635936-3635955 None:intergenic 30.0%
GGATAATGCATAATTTATGC+AGG - chr2.3:3635875-3635894 MS.gene85287:CDS 30.0%
TAACTAAGTGAAGTGAAAAG+AGG + chr2.3:3636991-3637010 None:intergenic 30.0%
TACCTTAAAGGTGAATATGT+GGG + chr2.3:3635924-3635943 None:intergenic 30.0%
TATATGGGGCTATCTAATAT+GGG - chr2.3:3635815-3635834 MS.gene85287:intron 30.0%
TATCTATGTTTGGTATGTGT+AGG - chr2.3:3637380-3637399 MS.gene85287:intron 30.0%
TATTGCCAATTTGTGAATGA+TGG - chr2.3:3638168-3638187 MS.gene85287:intron 30.0%
TCAGGATATGTATACTTCAT+GGG + chr2.3:3637861-3637880 None:intergenic 30.0%
TCTCATAAATCAAAGCACAA+GGG - chr2.3:3637617-3637636 MS.gene85287:intron 30.0%
TGGTAAAAAGAAAACCTAAC+AGG + chr2.3:3636598-3636617 None:intergenic 30.0%
TGTTACAAAAAGGTTCTTGA+AGG - chr2.3:3637496-3637515 MS.gene85287:intron 30.0%
TTACCTTAAAGGTGAATATG+TGG + chr2.3:3635925-3635944 None:intergenic 30.0%
TTATATGGGGCTATCTAATA+TGG - chr2.3:3635814-3635833 MS.gene85287:intron 30.0%
TTGAGCAACATATAAATGAG+AGG - chr2.3:3636684-3636703 MS.gene85287:intron 30.0%
TTTGTTACGTAGATATTTGG+AGG - chr2.3:3635475-3635494 MS.gene85287:intron 30.0%
! AAGAGCATGAACAAGATATT+TGG - chr2.3:3637085-3637104 MS.gene85287:CDS 30.0%
! ACAGTAACATGTTTTCCATT+AGG + chr2.3:3635356-3635375 None:intergenic 30.0%
! AGATATGGATTTTCTTCTGA+AGG + chr2.3:3636463-3636482 None:intergenic 30.0%
! CATTATTACATTTGAAGCAG+TGG - chr2.3:3637954-3637973 MS.gene85287:intron 30.0%
! TCTTTCTTTATTAGCCTGTT+AGG - chr2.3:3636581-3636600 MS.gene85287:intron 30.0%
!! TCACTTGTGTAATTGCTTTT+GGG - chr2.3:3636755-3636774 MS.gene85287:intron 30.0%
!! TTCCATTGTTTTATGCAGAA+GGG - chr2.3:3637883-3637902 MS.gene85287:intron 30.0%
!! TTTCCATTGTTTTATGCAGA+AGG - chr2.3:3637882-3637901 MS.gene85287:intron 30.0%
!!! ATTGGGGAGCTATTTTTTTA+GGG - chr2.3:3635748-3635767 MS.gene85287:intron 30.0%
!!! GAACAAGATATTTGGTTTTG+AGG - chr2.3:3637093-3637112 MS.gene85287:CDS 30.0%
!!! TAATGCTTATTTTGTGTGGT+TGG - chr2.3:3636945-3636964 MS.gene85287:intron 30.0%
!!! TTATTTTTGCCTCATGTGTA+CGG - chr2.3:3636284-3636303 MS.gene85287:CDS 30.0%
AAACCTAAGAAGAGGTTGTT+TGG + chr2.3:3636818-3636837 None:intergenic 35.0%
AAGTTGTTTGCATAAGCCAT+TGG + chr2.3:3638459-3638478 None:intergenic 35.0%
AATGGTGACTTTGTAGATAG+AGG - chr2.3:3636487-3636506 MS.gene85287:CDS 35.0%
ACAGTTATGTCAACAAGAGA+AGG + chr2.3:3635332-3635351 None:intergenic 35.0%
ACCTTAAAGGTGAATATGTG+GGG + chr2.3:3635923-3635942 None:intergenic 35.0%
ACGTAGATATTTGGAGGATA+GGG - chr2.3:3635481-3635500 MS.gene85287:intron 35.0%
AGGCTAATAAAGAAAGAGCT+AGG + chr2.3:3636578-3636597 None:intergenic 35.0%
AGGTGCTTCAAATCGAATAA+AGG + chr2.3:3637920-3637939 None:intergenic 35.0%
AGGTTGTAACAAAAGAGACA+TGG + chr2.3:3637711-3637730 None:intergenic 35.0%
ATATCCACCATAAAACGCTT+TGG + chr2.3:3638199-3638218 None:intergenic 35.0%
CATACCTAAAACAATGAACC+AGG + chr2.3:3635265-3635284 None:intergenic 35.0%
GACATACTTTCTTCTTGGAT+TGG - chr2.3:3638394-3638413 MS.gene85287:CDS 35.0%
GGAAAACATGTTACTGTTTG+TGG - chr2.3:3635359-3635378 MS.gene85287:intron 35.0%
GGCTAATAAAGAAAGAGCTA+GGG + chr2.3:3636577-3636596 None:intergenic 35.0%
GGTTATGAGATTCAACATGA+CGG - chr2.3:3637638-3637657 MS.gene85287:intron 35.0%
GTTACCTGATCACAGTAATT+TGG + chr2.3:3637689-3637708 None:intergenic 35.0%
GTTGACATAACTGTTCCTAA+TGG - chr2.3:3635338-3635357 MS.gene85287:intron 35.0%
TAAGCATCTAATCAGGTGAT+AGG + chr2.3:3636887-3636906 None:intergenic 35.0%
TACCCTTCTGCATAAAACAA+TGG + chr2.3:3637888-3637907 None:intergenic 35.0%
TACGTAGATATTTGGAGGAT+AGG - chr2.3:3635480-3635499 MS.gene85287:intron 35.0%
TATTCGGGATCAAGAATAGA+AGG - chr2.3:3635085-3635104 MS.gene85287:CDS 35.0%
TCAATTTGTGAGGTTATGTC+TGG - chr2.3:3638367-3638386 MS.gene85287:intron 35.0%
TCTTTGACCATTTATGTGGA+GGG - chr2.3:3635725-3635744 MS.gene85287:intron 35.0%
TTATGTGTCTTACCTTCATC+AGG + chr2.3:3637295-3637314 None:intergenic 35.0%
TTCACTTCACTTAGTTAGCT+GGG - chr2.3:3636994-3637013 MS.gene85287:intron 35.0%
TTCAGTGTTATCAATTGCAG+TGG + chr2.3:3638265-3638284 None:intergenic 35.0%
TTCTTTGACCATTTATGTGG+AGG - chr2.3:3635724-3635743 MS.gene85287:intron 35.0%
TTGGTGAGGATGTTACAAAA+AGG - chr2.3:3637486-3637505 MS.gene85287:intron 35.0%
TTGTTTATCACATGAGCCAA+AGG + chr2.3:3637184-3637203 None:intergenic 35.0%
TTTATGCAGAAGGGTAACAA+AGG - chr2.3:3637892-3637911 MS.gene85287:intron 35.0%
TTTCACTTCACTTAGTTAGC+TGG - chr2.3:3636993-3637012 MS.gene85287:intron 35.0%
! AGATAGAGGATCATTTTCAG+TGG - chr2.3:3636501-3636520 MS.gene85287:intron 35.0%
! CTCACTTGTGTAATTGCTTT+TGG - chr2.3:3636754-3636773 MS.gene85287:intron 35.0%
! GTGTTGACATACTTTCTTCT+TGG - chr2.3:3638389-3638408 MS.gene85287:CDS 35.0%
! TTGTCCTGGTTCATTGTTTT+AGG - chr2.3:3635258-3635277 MS.gene85287:intron 35.0%
!! TTTTTAGTCAAGTAGCCTAG+CGG + chr2.3:3635958-3635977 None:intergenic 35.0%
!!! AAAGCGTTTTATGGTGGATA+TGG - chr2.3:3638198-3638217 MS.gene85287:CDS 35.0%
!!! GATTGGGGAGCTATTTTTTT+AGG - chr2.3:3635747-3635766 MS.gene85287:intron 35.0%
!!! TTGGGGAGCTATTTTTTTAG+GGG - chr2.3:3635749-3635768 MS.gene85287:intron 35.0%
AAGATCATAGAACTGCATGC+AGG + chr2.3:3636413-3636432 None:intergenic 40.0%
AATATCATAAGCGTGTGGCA+CGG + chr2.3:3637812-3637831 None:intergenic 40.0%
AATGTCGAATTCTTGGCTTC+TGG - chr2.3:3638229-3638248 MS.gene85287:CDS 40.0%
ACCATTTATGTGGAGGGATT+GGG - chr2.3:3635731-3635750 MS.gene85287:intron 40.0%
ACCCCACATATTCACCTTTA+AGG - chr2.3:3635919-3635938 MS.gene85287:CDS 40.0%
ATTCTTGATCCCGAATATCG+TGG + chr2.3:3635082-3635101 None:intergenic 40.0%
CACTTGCACAACACATTCTT+TGG + chr2.3:3636618-3636637 None:intergenic 40.0%
GCTATTGAAACACCATATGG+CGG - chr2.3:3638109-3638128 MS.gene85287:intron 40.0%
GGCTTAGAATGTCGAATTCT+TGG - chr2.3:3638222-3638241 MS.gene85287:CDS 40.0%
GTATATGACAATTGCTCCCT+TGG - chr2.3:3635405-3635424 MS.gene85287:intron 40.0%
TCAGCCATGTATATAGCTAG+AGG - chr2.3:3637049-3637068 MS.gene85287:CDS 40.0%
TGACCAAACAACCTCTTCTT+AGG - chr2.3:3636812-3636831 MS.gene85287:intron 40.0%
TGACCCCATCAACACTAAAA+AGG + chr2.3:3637231-3637250 None:intergenic 40.0%
TGCCAATTTGTGAATGATGG+TGG - chr2.3:3638171-3638190 MS.gene85287:CDS 40.0%
TGCTCCAAATTACTGTGATC+AGG - chr2.3:3637682-3637701 MS.gene85287:intron 40.0%
TGGGCTATTGAAACACCATA+TGG - chr2.3:3638106-3638125 MS.gene85287:intron 40.0%
TGTATAATATATGCAGGGGC+CGG + chr2.3:3636095-3636114 None:intergenic 40.0%
TGTTGCTAGTAACTTCAAGG+TGG - chr2.3:3635449-3635468 MS.gene85287:intron 40.0%
TTAAATCCTCCGTACACATG+AGG + chr2.3:3636296-3636315 None:intergenic 40.0%
TTTAAGTGCATGTCTCCATC+TGG - chr2.3:3636547-3636566 MS.gene85287:intron 40.0%
! AAGAAAGTTTTCGTCGTCCA+TGG - chr2.3:3637202-3637221 MS.gene85287:intron 40.0%
!! AACAGAAGTGCTTGGATAGA+GGG - chr2.3:3635158-3635177 MS.gene85287:intron 40.0%
!! AAGCCATTGGCTTAACATCA+GGG + chr2.3:3638446-3638465 None:intergenic 40.0%
!! GTAATTGCTTTTGGGCAATG+CGG - chr2.3:3636763-3636782 MS.gene85287:intron 40.0%
!! TAAGCCATTGGCTTAACATC+AGG + chr2.3:3638447-3638466 None:intergenic 40.0%
!! TTTCAAGGAACAGAAGTGCT+TGG - chr2.3:3635150-3635169 MS.gene85287:intron 40.0%
!!! AGGCCTTTTTAGTGTTGATG+GGG - chr2.3:3637225-3637244 MS.gene85287:intron 40.0%
!!! GAGGCCTTTTTAGTGTTGAT+GGG - chr2.3:3637224-3637243 MS.gene85287:intron 40.0%
!!! GATATTTGGTTTTGAGGGTG+AGG - chr2.3:3637099-3637118 MS.gene85287:CDS 40.0%
!!! GGAGCTATTTTTTTAGGGGA+GGG - chr2.3:3635753-3635772 MS.gene85287:intron 40.0%
AAGAGCTAGGGTTTACCAGA+TGG + chr2.3:3636565-3636584 None:intergenic 45.0%
AAGAGGTTGTTTGGTCACGA+GGG + chr2.3:3636809-3636828 None:intergenic 45.0%
ACACCCTGATGTTAAGCCAA+TGG - chr2.3:3638440-3638459 MS.gene85287:CDS 45.0%
CAACACTAAAAAGGCCTCCA+TGG + chr2.3:3637222-3637241 None:intergenic 45.0%
CCATTTATGTGGAGGGATTG+GGG - chr2.3:3635732-3635751 MS.gene85287:intron 45.0%
CGCCACCATCATTCACAAAT+TGG + chr2.3:3638176-3638195 None:intergenic 45.0%
GACCATTTATGTGGAGGGAT+TGG - chr2.3:3635730-3635749 MS.gene85287:intron 45.0%
GAGCTTAGCTCACTTGGTAA+GGG - chr2.3:3635854-3635873 MS.gene85287:intron 45.0%
GATGTGCATGGTCAGGTAAT+TGG - chr2.3:3635383-3635402 MS.gene85287:intron 45.0%
GGTAAATTTCTCTAGCCGCT+AGG - chr2.3:3635940-3635959 MS.gene85287:CDS 45.0%
GTATAATATATGCAGGGGCC+GGG + chr2.3:3636094-3636113 None:intergenic 45.0%
GTATGAGTTCCAGCAACACT+AGG + chr2.3:3636027-3636046 None:intergenic 45.0%
GTCAAGTATCCTAGTGTTGC+TGG - chr2.3:3636015-3636034 MS.gene85287:intron 45.0%
TGAGCTTAGCTCACTTGGTA+AGG - chr2.3:3635853-3635872 MS.gene85287:intron 45.0%
TGCATAATTTATGCAGGGGC+CGG - chr2.3:3635881-3635900 MS.gene85287:CDS 45.0%
TGTGTCTTACCTTCATCAGG+AGG + chr2.3:3637292-3637311 None:intergenic 45.0%
! AAAGTTTTCGTCGTCCATGG+AGG - chr2.3:3637205-3637224 MS.gene85287:intron 45.0%
! ATTGGCTTAACATCAGGGTG+TGG + chr2.3:3638441-3638460 None:intergenic 45.0%
! GTGAGTCTAGCTCAGTTGAA+AGG + chr2.3:3636123-3636142 None:intergenic 45.0%
! TTTTGTGAGCCTCCTGATGA+AGG - chr2.3:3637280-3637299 MS.gene85287:intron 45.0%
! TTTTTGCCTCATGTGTACGG+AGG - chr2.3:3636287-3636306 MS.gene85287:CDS 45.0%
!! AAACACCATATGGCGGATTG+TGG - chr2.3:3638116-3638135 MS.gene85287:intron 45.0%
!! GAACAGAAGTGCTTGGATAG+AGG - chr2.3:3635157-3635176 MS.gene85287:intron 45.0%
!! GGAGGCCTTTTTAGTGTTGA+TGG - chr2.3:3637223-3637242 MS.gene85287:intron 45.0%
!! GGTTGATGCATGACTTGCTA+TGG - chr2.3:3637402-3637421 MS.gene85287:intron 45.0%
!!! GCGTTTTATGGTGGATATGG+TGG - chr2.3:3638201-3638220 MS.gene85287:CDS 45.0%
!!! GGGAGCTATTTTTTTAGGGG+AGG - chr2.3:3635752-3635771 MS.gene85287:intron 45.0%
!!! TGGGTGCTTTTGTTTTGGTG+AGG - chr2.3:3637472-3637491 MS.gene85287:intron 45.0%
!! ATTATAATAAAAAATGAAAA+AGG - chr2.3:3638060-3638079 MS.gene85287:intron 5.0%
!!! AAATTTATTTTTACTAAAAA+TGG - chr2.3:3636220-3636239 MS.gene85287:intron 5.0%
!!! ATATTATTTTTGATATATTA+TGG - chr2.3:3636842-3636861 MS.gene85287:intron 5.0%
ACTGTTTGTGGCGATGTGCA+TGG - chr2.3:3635371-3635390 MS.gene85287:intron 50.0%
AGAGGTTGTTTGGTCACGAG+GGG + chr2.3:3636808-3636827 None:intergenic 50.0%
AGTGATCCACAATCTCTCCC+TGG - chr2.3:3637425-3637444 MS.gene85287:intron 50.0%
AGTGTCCGGAATTCGAACTC+CGG - chr2.3:3636068-3636087 MS.gene85287:CDS 50.0%
ATCAATTGCAGTGGCAGACG+AGG + chr2.3:3638256-3638275 None:intergenic 50.0%
CATAATTTATGCAGGGGCCG+GGG - chr2.3:3635883-3635902 MS.gene85287:CDS 50.0%
CCCCAATCCCTCCACATAAA+TGG + chr2.3:3635735-3635754 None:intergenic 50.0%
GAAGAGGTTGTTTGGTCACG+AGG + chr2.3:3636810-3636829 None:intergenic 50.0%
GAGCTAGACTCACGAAGACA+AGG - chr2.3:3636130-3636149 MS.gene85287:CDS 50.0%
GCATAATTTATGCAGGGGCC+GGG - chr2.3:3635882-3635901 MS.gene85287:CDS 50.0%
TCAATTGCAGTGGCAGACGA+GGG + chr2.3:3638255-3638274 None:intergenic 50.0%
! AGGTGAATATGTGGGGTGTC+AGG + chr2.3:3635916-3635935 None:intergenic 50.0%
! GGTGAATATGTGGGGTGTCA+GGG + chr2.3:3635915-3635934 None:intergenic 50.0%
!! GGCGATGGGTGCTTTTGTTT+TGG - chr2.3:3637467-3637486 MS.gene85287:intron 50.0%
ATGCGGTGAAGTCGAGTGTC+CGG - chr2.3:3636054-3636073 MS.gene85287:CDS 55.0%
CCACAATCTCTCCCTGGAAG+AGG - chr2.3:3637431-3637450 MS.gene85287:intron 55.0%
CCTCTTCCAGGGAGAGATTG+TGG + chr2.3:3637434-3637453 None:intergenic 55.0%
CGCTGTGAGCTTAGCTCACT+TGG - chr2.3:3635848-3635867 MS.gene85287:intron 55.0%
GCTTGCTTGGTCCTCTTCCA+GGG + chr2.3:3637445-3637464 None:intergenic 55.0%
TGCCACCACAATCCGCCATA+TGG + chr2.3:3638124-3638143 None:intergenic 55.0%
TTGTGGCGATGTGCATGGTC+AGG - chr2.3:3635376-3635395 MS.gene85287:intron 55.0%
!! CACCATATGGCGGATTGTGG+TGG - chr2.3:3638119-3638138 MS.gene85287:intron 55.0%
!! GGCGCCAAAGCGTTTTATGG+TGG - chr2.3:3638192-3638211 MS.gene85287:CDS 55.0%
!! GGTGGCGCCAAAGCGTTTTA+TGG - chr2.3:3638189-3638208 MS.gene85287:CDS 55.0%
AATATATGCAGGGGCCGGGC+CGG + chr2.3:3636090-3636109 None:intergenic 60.0%
CGCTTGCTTGGTCCTCTTCC+AGG + chr2.3:3637446-3637465 None:intergenic 60.0%
GACCAAGCAAGCGTGGCGAT+GGG - chr2.3:3637453-3637472 MS.gene85287:intron 60.0%
GGAAGAGGACCAAGCAAGCG+TGG - chr2.3:3637446-3637465 MS.gene85287:intron 60.0%
CACCCATCGCCACGCTTGCT+TGG + chr2.3:3637458-3637477 None:intergenic 65.0%
CCGGAATTCGAACTCCGGCC+CGG - chr2.3:3636073-3636092 MS.gene85287:CDS 65.0%
CCGGGCCGGAGTTCGAATTC+CGG + chr2.3:3636076-3636095 None:intergenic 65.0%
GGACCAAGCAAGCGTGGCGA+TGG - chr2.3:3637452-3637471 MS.gene85287:intron 65.0%
GGGTGTCAGGGTTCGAACCC+CGG + chr2.3:3635903-3635922 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 3635071 3638497 3635071 ID=MS.gene85287
chr2.3 mRNA 3635071 3638497 3635071 ID=MS.gene85287.t1;Parent=MS.gene85287
chr2.3 exon 3638389 3638497 3638389 ID=MS.gene85287.t1.exon1;Parent=MS.gene85287.t1
chr2.3 CDS 3638389 3638497 3638389 ID=cds.MS.gene85287.t1;Parent=MS.gene85287.t1
chr2.3 exon 3638171 3638288 3638171 ID=MS.gene85287.t1.exon2;Parent=MS.gene85287.t1
chr2.3 CDS 3638171 3638288 3638171 ID=cds.MS.gene85287.t1;Parent=MS.gene85287.t1
chr2.3 exon 3637000 3637147 3637000 ID=MS.gene85287.t1.exon3;Parent=MS.gene85287.t1
chr2.3 CDS 3637000 3637147 3637000 ID=cds.MS.gene85287.t1;Parent=MS.gene85287.t1
chr2.3 exon 3636267 3636515 3636267 ID=MS.gene85287.t1.exon4;Parent=MS.gene85287.t1
chr2.3 CDS 3636267 3636515 3636267 ID=cds.MS.gene85287.t1;Parent=MS.gene85287.t1
chr2.3 exon 3636038 3636166 3636038 ID=MS.gene85287.t1.exon5;Parent=MS.gene85287.t1
chr2.3 CDS 3636038 3636166 3636038 ID=cds.MS.gene85287.t1;Parent=MS.gene85287.t1
chr2.3 exon 3635865 3635965 3635865 ID=MS.gene85287.t1.exon6;Parent=MS.gene85287.t1
chr2.3 CDS 3635865 3635965 3635865 ID=cds.MS.gene85287.t1;Parent=MS.gene85287.t1
chr2.3 exon 3635593 3635667 3635593 ID=MS.gene85287.t1.exon7;Parent=MS.gene85287.t1
chr2.3 CDS 3635593 3635667 3635593 ID=cds.MS.gene85287.t1;Parent=MS.gene85287.t1
chr2.3 exon 3635071 3635130 3635071 ID=MS.gene85287.t1.exon8;Parent=MS.gene85287.t1
chr2.3 CDS 3635071 3635130 3635071 ID=cds.MS.gene85287.t1;Parent=MS.gene85287.t1
Gene Sequence

>MS.gene85287

ATGTCGAGCCACGATATTCGGGATCAAGAATAGAAGGAGATACTATTACTTTGGATTTCGTAAAGAAAATGATGAATGATTTCAAGGAACAGAAGTGCTTGGATAGAGGGTATTGAAGTAATAAGATTTTTTTTTTTTGTGAAACCGTTTGTACTTTTATTGAAGTGTTGTTGAAATGTATTTGCATTTGTCCTGGTTCATTGTTTTAGGTATGCATCCAAGATTTTGTTGCAAACAAAAAAGGTTTTGAAAGCTTTGCCTTCTCTTGTTGACATAACTGTTCCTAATGGAAAACATGTTACTGTTTGTGGCGATGTGCATGGTCAGGTAATTGGTATATGACAATTGCTCCCTTGGTTTATTATTTGCGAAAACAATTGTTGCTAGTAACTTCAAGGTGGTTCTTTGTTACGTAGATATTTGGAGGATAGGGTTGTTCTCACACCATCATTGATTTTTTCTTATATAACTTTTATTGACTCAATCTTTTTCAAATTTGAATTTAAATTTTATTTACACTTTGATCACAGGAAACTTCAAAACTAAATACCTATTATCTTGCTATTCTATAACAAACTTTAAACTAACAATATAATAAAAGATTTAAATAGACGAGCGTGTGTCTCTCTTTCTGTTATGTTCATAAAGTAAATTTCTTTGACCATTTATGTGGAGGGATTGGGGAGCTATTTTTTTAGGGGAGGGAGCTATATTTTTTGTTGATGAGCTTGTTAGTTAATATTTTATATGGGGCTATCTAATATGGGTCAGATCTGTCGCTGTGAGCTTAGCTCACTTGGTAAGGGATAATGCATAATTTATGCAGGGGCCGGGGTTCGAACCCTGACACCCCACATATTCACCTTTAAGGTAAATTTCTCTAGCCGCTAGGCTACTTGACTAAAAAAAAAAAGGGTCAGATCTAAAGGTAGATCATTTTTTTGGTCAAGTATCCTAGTGTTGCTGGAACTCATACATTTTAAATGCGGTGAAGTCGAGTGTCCGGAATTCGAACTCCGGCCCGGCCCCTGCATATATTATACATTCTTCCTTTCAACTGAGCTAGACTCACGAAGACAAGGTGAATCCTTCTATTCCTGACAAATTTTAATAAAATATTATATGCATACGCTATTTTTTATCATTATAAAATTTATTTTTACTAAAAATGGTAAAGGTCCATATTTATACATTTTCTGAGAGGACATTTAGATTATTTTTGCCTCATGTGTACGGAGGATTTAACTTCCTTGTTGAATTTATTTCCATTTATTCTGATTATACATGTTTGGCTAACTTTATTTAACTACCAACCCTTTCAATTTTATTTTTCATGACTCCTGCATGCAGTTCTATGATCTTTTGAATATTTTTGAGCTCAATGGGCTTCCTTCAGAAGAAAATCCATATCTATTTAATGGTGACTTTGTAGATAGAGGATCATTTTCAGTGGAAGTCGCATTCACTTTGTTTGCATTTAAGTGCATGTCTCCATCTGGTAAACCCTAGCTCTTTCTTTATTAGCCTGTTAGGTTTTCTTTTTACCAAAGAATGTGTTGTGCAAGTGTGAGATGAGTTAGAAGTCCCGTATTAATTATTTGGAAAAAAGGACATTGAGCAACATATAAATGAGAGGATCTATAAACTATATGACTTACGGTTTTACGTAAAAATGTGCTGTAACTCACTTGTGTAATTGCTTTTGGGCAATGCGGATAATTCTCTAAATTAACTCCCCTCGTGACCAAACAACCTCTTCTTAGGTTTCATTATATTATTTTTGATATATTATGGATTATTTAATTTATCATCTCCTATCACCTGATTAGATGCTTAATTTATTAACTTATTTTTCAATTGAATTGTATAATCAATAATGCTTATTTTGTGTGGTTGGATTTTCGTAAATATTATACTCCTCTTTTCACTTCACTTAGTTAGCTGGGATGTTGTAACTTGTTTTGCTTCTATATTATTTTCAGCCATGTATATAGCTAGAGGAAATCATGAGAGCAAGAGCATGAACAAGATATTTGGTTTTGAGGGTGAGGTGCGCTCAAAGTTGAATGACAAATTTGTCAAAATGTTTGCGGAAGTATTCAACTGTTTACCTTTGGCTCATGTGATAAACAAGAAAGTTTTCGTCGTCCATGGAGGCCTTTTTAGTGTTGATGGGGTCAAACTCTCTCAAATCCGATCAATTAATCGGTTTTGTGAGCCTCCTGATGAAGGTAAGACACATAATTTTTTTTTTTTCTTGCTATTCATCATAATCCTTAATACTTCTTTGTATTGTAGTTTTGTTTATGTATCTATGTTTGGTATGTGTAGGGTTGATGCATGACTTGCTATGGAGTGATCCACAATCTCTCCCTGGAAGAGGACCAAGCAAGCGTGGCGATGGGTGCTTTTGTTTTGGTGAGGATGTTACAAAAAGGTTCTTGAAGGATAATAATTTAGGTATGTTTTCCATTGGTTTGATACTTAATTTCTTATTTCACTGGTGACTTGATATGAATTATCATTTTACAGATTTAGTTGTGAGATCTCATAAATCAAAGCACAAGGGTTATGAGATTCAACATGACGGTAAACTCATAACTGTATTTTCTGCTCCAAATTACTGTGATCAGGTAACCATGTCTCTTTTGTTACAACCTTCTTTCTATGTATCTATGTTTGGTATAAGTGATTACTTACATACATTAATATCATAAGCGTGTGACATTGAGTTGTGACCGTGCCACACGCTTATGATATTAATGTATGTAAGTAATCACTTATACTCCCATGAAGTATACATATCCTGATTTTCCATTGTTTTATGCAGAAGGGTAACAAAGGTGCCTTTATTCGATTTGAAGCACCTGATTTGAAACCTAACATTATTACATTTGAAGCAGTGGTTAGTATCTTTCATAATTTGAAGTCTGTCATCTTATATTATCTTTCATAATTTGAAATCTGTCATGTTATATTATGTATAGTCATTATAATAAAAAATGAAAAAGGAAAAGAATCAGTGTTGTTAAATATGGGCTATTGAAACACCATATGGCGGATTGTGGTGGCAGATTCTTTCACTAGTGTAGTGTCATATTGCCAATTTGTGAATGATGGTGGCGCCAAAGCGTTTTATGGTGGATATGGTGGCTTAGAATGTCGAATTCTTGGCTTCTGGCCCTCGTCTGCCACTGCAATTGATAACACTGAAAATAATTAACAAAAGTATATAACTCTTCATTTCATGTTACAATCATTCTGTTGCACTGTGATTAAATTATACATATCTTCATTCAATTTGTGAGGTTATGTCTGGTGTTGACATACTTTCTTCTTGGATTGGTTCACTTTATTGAATTTGCAGCCACACCCTGATGTTAAGCCAATGGCTTATGCAAACAACTTCAACCGATTTTTCTCATAA

Protein sequence

>MS.gene85287.t1

MSSHDIRDQEUKEILLLWISURKUUMISRNRSAWIEGMHPRFCCKQKRFUKLCLLLLTULFLMENMLLFVAMCMVSSMIFUIFLSSMGFLQKKIHIYLMVTLUIEDHFQWKSHSLCLHLSACLHLPCIULEEIMRARAUTRYLVLRVRCAQSUMTNLSKCLRKYSTVYLWLMUUTRKFSSSMEAFLVLMGSNSLKSDQLIGFVSLLMKGUCMTCYGVIHNLSLEEDQASVAMGAFVLVRMLQKGSURIIIUIULUDLINQSTRVMRFNMTVNSULYFLLQITVIRRVTKVPLFDLKHLIUNLTLLHLKQCHTLMLSQWLMQTTSTDFSH