Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24642.t1 | XP_003625765.1 | 100 | 168 | 0 | 0 | 1 | 168 | 1 | 168 | 3.20E-72 | 281.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24642.t1 | G7L5Y6 | 100.0 | 168 | 0 | 0 | 1 | 168 | 1 | 168 | 2.3e-72 | 281.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene24642 | 0.817187 | 3.76E-52 | -1.69E-46 |
| MS.gene049272 | MS.gene24642 | 0.805771 | 1.14E-49 | -1.69E-46 |
| MS.gene049343 | MS.gene24642 | 0.802861 | 4.59E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene24642 | 0.800029 | 1.75E-48 | -1.69E-46 |
| MS.gene049435 | MS.gene24642 | 0.806871 | 6.66E-50 | -1.69E-46 |
| MS.gene049452 | MS.gene24642 | 0.813058 | 3.10E-51 | -1.69E-46 |
| MS.gene049669 | MS.gene24642 | 0.809757 | 1.62E-50 | -1.69E-46 |
| MS.gene050156 | MS.gene24642 | 0.826542 | 2.56E-54 | -1.69E-46 |
| MS.gene050287 | MS.gene24642 | -0.810764 | 9.80E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene24642 | 0.84213 | 3.12E-58 | -1.69E-46 |
| MS.gene050750 | MS.gene24642 | 0.860358 | 2.18E-63 | -1.69E-46 |
| MS.gene050787 | MS.gene24642 | 0.821657 | 3.59E-53 | -1.69E-46 |
| MS.gene050826 | MS.gene24642 | 0.804439 | 2.16E-49 | -1.69E-46 |
| MS.gene050844 | MS.gene24642 | 0.826113 | 3.24E-54 | -1.69E-46 |
| MS.gene050953 | MS.gene24642 | 0.850053 | 2.18E-60 | -1.69E-46 |
| MS.gene051181 | MS.gene24642 | 0.807053 | 6.10E-50 | -1.69E-46 |
| MS.gene051190 | MS.gene24642 | 0.817049 | 4.03E-52 | -1.69E-46 |
| MS.gene051368 | MS.gene24642 | 0.814119 | 1.81E-51 | -1.69E-46 |
| MS.gene051924 | MS.gene24642 | -0.844958 | 5.47E-59 | -1.69E-46 |
| MS.gene051926 | MS.gene24642 | -0.830568 | 2.73E-55 | -1.69E-46 |
| MS.gene052042 | MS.gene24642 | 0.877588 | 5.57E-69 | -1.69E-46 |
| MS.gene052190 | MS.gene24642 | 0.855073 | 8.06E-62 | -1.69E-46 |
| MS.gene052333 | MS.gene24642 | 0.873629 | 1.27E-67 | -1.69E-46 |
| MS.gene052384 | MS.gene24642 | 0.800437 | 1.44E-48 | -1.69E-46 |
| MS.gene052519 | MS.gene24642 | 0.845515 | 3.87E-59 | -1.69E-46 |
| MS.gene052863 | MS.gene24642 | 0.832152 | 1.11E-55 | -1.69E-46 |
| MS.gene05288 | MS.gene24642 | 0.808254 | 3.39E-50 | -1.69E-46 |
| MS.gene052965 | MS.gene24642 | -0.814768 | 1.30E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene24642 | 0.821745 | 3.43E-53 | -1.69E-46 |
| MS.gene053145 | MS.gene24642 | 0.806356 | 8.56E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene24642 | 0.834963 | 2.21E-56 | -1.69E-46 |
| MS.gene05414 | MS.gene24642 | 0.802403 | 5.71E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene24642 | 0.810581 | 1.07E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene24642 | 0.83597 | 1.23E-56 | -1.69E-46 |
| MS.gene054291 | MS.gene24642 | -0.865112 | 7.48E-65 | -1.69E-46 |
| MS.gene054405 | MS.gene24642 | 0.849322 | 3.48E-60 | -1.69E-46 |
| MS.gene054467 | MS.gene24642 | 0.850897 | 1.26E-60 | -1.69E-46 |
| MS.gene054468 | MS.gene24642 | 0.853335 | 2.56E-61 | -1.69E-46 |
| MS.gene054472 | MS.gene24642 | 0.805671 | 1.19E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene24642 | 0.830108 | 3.54E-55 | -1.69E-46 |
| MS.gene054651 | MS.gene24642 | 0.807454 | 5.02E-50 | -1.69E-46 |
| MS.gene05468 | MS.gene24642 | 0.801701 | 7.95E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene24642 | 0.827437 | 1.57E-54 | -1.69E-46 |
| MS.gene055166 | MS.gene24642 | 0.800159 | 1.64E-48 | -1.69E-46 |
| MS.gene055356 | MS.gene24642 | 0.823941 | 1.06E-53 | -1.69E-46 |
| MS.gene055358 | MS.gene24642 | 0.820169 | 7.91E-53 | -1.69E-46 |
| MS.gene055701 | MS.gene24642 | 0.860474 | 2.01E-63 | -1.69E-46 |
| MS.gene055818 | MS.gene24642 | 0.879379 | 1.31E-69 | -1.69E-46 |
| MS.gene055926 | MS.gene24642 | 0.823567 | 1.29E-53 | -1.69E-46 |
| MS.gene05604 | MS.gene24642 | 0.80136 | 9.34E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene24642 | 0.804546 | 2.05E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene24642 | 0.818759 | 1.66E-52 | -1.69E-46 |
| MS.gene056595 | MS.gene24642 | 0.810992 | 8.75E-51 | -1.69E-46 |
| MS.gene056779 | MS.gene24642 | 0.81461 | 1.41E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene24642 | 0.852573 | 4.22E-61 | -1.69E-46 |
| MS.gene057156 | MS.gene24642 | -0.823645 | 1.24E-53 | -1.69E-46 |
| MS.gene057194 | MS.gene24642 | 0.813341 | 2.69E-51 | -1.69E-46 |
| MS.gene05761 | MS.gene24642 | 0.814985 | 1.17E-51 | -1.69E-46 |
| MS.gene058146 | MS.gene24642 | 0.807935 | 3.96E-50 | -1.69E-46 |
| MS.gene058502 | MS.gene24642 | 0.804011 | 2.65E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene24642 | 0.812228 | 4.71E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene24642 | 0.801591 | 8.37E-49 | -1.69E-46 |
| MS.gene059272 | MS.gene24642 | 0.804418 | 2.18E-49 | -1.69E-46 |
| MS.gene059283 | MS.gene24642 | 0.839756 | 1.31E-57 | -1.69E-46 |
| MS.gene059609 | MS.gene24642 | 0.843579 | 1.28E-58 | -1.69E-46 |
| MS.gene059789 | MS.gene24642 | 0.819662 | 1.03E-52 | -1.69E-46 |
| MS.gene059842 | MS.gene24642 | 0.811594 | 6.48E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene24642 | 0.849727 | 2.69E-60 | -1.69E-46 |
| MS.gene060137 | MS.gene24642 | -0.800277 | 1.55E-48 | -1.69E-46 |
| MS.gene060322 | MS.gene24642 | 0.89052 | 9.14E-74 | -1.69E-46 |
| MS.gene06052 | MS.gene24642 | 0.842118 | 3.14E-58 | -1.69E-46 |
| MS.gene060572 | MS.gene24642 | 0.812248 | 4.66E-51 | -1.69E-46 |
| MS.gene060683 | MS.gene24642 | 0.820558 | 6.44E-53 | -1.69E-46 |
| MS.gene060685 | MS.gene24642 | 0.830619 | 2.65E-55 | -1.69E-46 |
| MS.gene060781 | MS.gene24642 | 0.808906 | 2.46E-50 | -1.69E-46 |
| MS.gene060802 | MS.gene24642 | 0.845773 | 3.29E-59 | -1.69E-46 |
| MS.gene060803 | MS.gene24642 | 0.852606 | 4.13E-61 | -1.69E-46 |
| MS.gene061040 | MS.gene24642 | -0.828283 | 9.80E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene24642 | -0.810888 | 9.22E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24642.t1 | MTR_7g104020 | 100.000 | 168 | 0 | 0 | 1 | 168 | 1 | 168 | 2.79e-118 | 331 |
| MS.gene24642.t1 | MTR_7g104020 | 98.246 | 171 | 0 | 1 | 1 | 168 | 1 | 171 | 3.32e-116 | 326 |
| MS.gene24642.t1 | MTR_2g085025 | 69.032 | 155 | 46 | 1 | 14 | 166 | 20 | 174 | 6.12e-63 | 191 |
| MS.gene24642.t1 | MTR_1g492930 | 59.494 | 158 | 61 | 1 | 14 | 168 | 4 | 161 | 6.71e-59 | 181 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24642.t1 | AT2G36410 | 77.564 | 156 | 34 | 1 | 10 | 165 | 38 | 192 | 1.68e-84 | 247 |
| MS.gene24642.t1 | AT2G36410 | 76.101 | 159 | 34 | 2 | 10 | 165 | 38 | 195 | 2.67e-82 | 241 |
| MS.gene24642.t1 | AT3G09980 | 82.911 | 158 | 27 | 0 | 9 | 166 | 21 | 178 | 1.76e-81 | 239 |
| MS.gene24642.t1 | AT3G52920 | 80.137 | 146 | 29 | 0 | 19 | 164 | 17 | 162 | 4.51e-81 | 238 |
| MS.gene24642.t1 | AT3G52920 | 78.523 | 149 | 29 | 1 | 19 | 164 | 17 | 165 | 7.78e-79 | 232 |
| MS.gene24642.t1 | AT5G03660 | 72.785 | 158 | 43 | 0 | 6 | 163 | 12 | 169 | 1.21e-65 | 198 |
| MS.gene24642.t1 | AT2G27740 | 60.526 | 152 | 58 | 1 | 14 | 163 | 19 | 170 | 2.87e-62 | 190 |
| MS.gene24642.t1 | AT2G36410 | 76.415 | 106 | 24 | 1 | 10 | 115 | 38 | 142 | 2.98e-54 | 169 |
| MS.gene24642.t1 | AT5G03660 | 70.504 | 139 | 41 | 0 | 6 | 144 | 12 | 150 | 8.90e-54 | 167 |
| MS.gene24642.t1 | AT3G52900 | 53.659 | 164 | 72 | 2 | 6 | 166 | 2 | 164 | 1.62e-52 | 165 |
| MS.gene24642.t1 | AT5G03660 | 62.025 | 158 | 38 | 1 | 6 | 163 | 12 | 147 | 9.39e-47 | 150 |
| MS.gene24642.t1 | AT2G36355 | 50.331 | 151 | 75 | 0 | 16 | 166 | 5 | 155 | 5.15e-45 | 145 |
| MS.gene24642.t1 | AT2G27740 | 57.692 | 104 | 42 | 1 | 14 | 115 | 19 | 122 | 8.57e-39 | 129 |
| MS.gene24642.t1 | AT2G36355 | 58.621 | 87 | 36 | 0 | 80 | 166 | 27 | 113 | 8.20e-31 | 108 |
| MS.gene24642.t1 | AT2G36355 | 58.333 | 84 | 35 | 0 | 83 | 166 | 1 | 84 | 5.65e-30 | 105 |
| MS.gene24642.t1 | AT2G36355 | 46.000 | 100 | 54 | 0 | 16 | 115 | 5 | 104 | 1.05e-22 | 88.2 |
Find 31 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTGGTTGTACAGAATTC+AGG | 0.260998 | 7.2:-8801479 | MS.gene24642:CDS |
| ACAGCTAATTACTAAATTAA+TGG | 0.284229 | 7.2:-8800291 | MS.gene24642:CDS |
| AAGCTTTCAATGAAAAGAAT+AGG | 0.336763 | 7.2:-8800322 | MS.gene24642:CDS |
| AGTGAAACTTCTTTCCTCAT+TGG | 0.356625 | 7.2:+8800552 | None:intergenic |
| TAACCTAGCTCACCTTCTTC+TGG | 0.386647 | 7.2:+8800472 | None:intergenic |
| AGCTTTCAATGAAAAGAATA+GGG | 0.424472 | 7.2:-8800321 | MS.gene24642:CDS |
| CTTTCCTCATTGGATCTGCA+AGG | 0.450818 | 7.2:+8800562 | None:intergenic |
| AGAAATTGAAAAGAAGAAGA+TGG | 0.462319 | 7.2:-8801372 | MS.gene24642:CDS |
| CTGAATTCTGTACAACCAAC+TGG | 0.468188 | 7.2:+8801480 | None:intergenic |
| AAGATTGAGGATGAAGAAGC+TGG | 0.477057 | 7.2:-8799550 | MS.gene24642:CDS |
| GCTAAATCATTGCATTTGCA+TGG | 0.478899 | 7.2:+8799503 | None:intergenic |
| GACAAGGTTCAGTTTCAGTT+GGG | 0.484764 | 7.2:-8801341 | MS.gene24642:CDS |
| TTTCCTCATTGGATCTGCAA+GGG | 0.489503 | 7.2:+8800563 | None:intergenic |
| AGACAAGGTTCAGTTTCAGT+TGG | 0.495018 | 7.2:-8801342 | MS.gene24642:CDS |
| AGTTGGTTGTACAGAATTCA+GGG | 0.496303 | 7.2:-8801478 | MS.gene24642:CDS |
| TGGTCATACCTGCCAGAAGA+AGG | 0.536387 | 7.2:-8800484 | MS.gene24642:intron |
| CTTTAGCAGTCACTTGTCAA+AGG | 0.542571 | 7.2:-8801447 | MS.gene24642:CDS |
| CTAGCTCACCTTCTTCTGGC+AGG | 0.555949 | 7.2:+8800476 | None:intergenic |
| TTCTGGCAGGTATGACCAAG+TGG | 0.569790 | 7.2:+8800489 | None:intergenic |
| TGTTGATGTGATTAGCTGGT+GGG | 0.572662 | 7.2:-8799582 | MS.gene24642:intron |
| GTTGATGTGATTAGCTGGTG+GGG | 0.573033 | 7.2:-8799581 | MS.gene24642:intron |
| AGGAAGATGAAGAGATGTCA+AGG | 0.586395 | 7.2:-8801427 | MS.gene24642:CDS |
| AACAAAGAATTAAAGCCACT+TGG | 0.593321 | 7.2:-8800504 | MS.gene24642:CDS |
| TTGATGTGATTAGCTGGTGG+GGG | 0.596450 | 7.2:-8799580 | MS.gene24642:intron |
| GCTAATTACTAAATTAATGG+AGG | 0.597346 | 7.2:-8800288 | MS.gene24642:intron |
| CAAAATATAAACCTCACGAA+TGG | 0.615296 | 7.2:+8801286 | None:intergenic |
| ACGTCTTGCTACCATTCGTG+AGG | 0.618633 | 7.2:-8801297 | MS.gene24642:intron |
| GAAGATGGAAGTTAGAGACA+AGG | 0.621610 | 7.2:-8801357 | MS.gene24642:CDS |
| AAGCCCTTGCAGATCCAATG+AGG | 0.655089 | 7.2:-8800566 | MS.gene24642:CDS |
| AAGCAACAGTAACAACCAGT+TGG | 0.659075 | 7.2:-8801495 | MS.gene24642:CDS |
| ATTGAGGATGAAGAAGCTGG+AGG | 0.703230 | 7.2:-8799547 | MS.gene24642:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGGAAAAAAAAAAATAA+TGG | + | chr7.2:8800343-8800362 | None:intergenic | 10.0% |
| !! | AAATCTAAGAAGAAAAAAAA+AGG | + | chr7.2:8799760-8799779 | None:intergenic | 15.0% |
| !! | AACATAAGTACAAAAATTTA+AGG | - | chr7.2:8799882-8799901 | MS.gene24642:intron | 15.0% |
| !! | AATTCAATTTCAAATTTCAA+TGG | + | chr7.2:8800636-8800655 | None:intergenic | 15.0% |
| !! | GAATATACATAAATATCTTT+AGG | - | chr7.2:8801334-8801353 | MS.gene24642:CDS | 15.0% |
| !! | TGTAATAATTTGATTAATTG+AGG | - | chr7.2:8800084-8800103 | MS.gene24642:intron | 15.0% |
| !!! | TAAATTTTTGTACTTATGTT+TGG | + | chr7.2:8799882-8799901 | None:intergenic | 15.0% |
| !!! | TTTTTTTCCAAAAATGAAAA+GGG | + | chr7.2:8799816-8799835 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATAATGGCTG+AGG | + | chr7.2:8800337-8800356 | None:intergenic | 20.0% |
| !! | ACAGCTAATTACTAAATTAA+TGG | - | chr7.2:8800727-8800746 | MS.gene24642:intron | 20.0% |
| !! | ATACATATTACAAATGAGAA+TGG | - | chr7.2:8801185-8801204 | MS.gene24642:intron | 20.0% |
| !!! | AAACTGTTAATTAGTGTTTT+TGG | - | chr7.2:8800586-8800605 | MS.gene24642:intron | 20.0% |
| !!! | AACAAATTTTAGTTTCAAGT+TGG | - | chr7.2:8800925-8800944 | MS.gene24642:intron | 20.0% |
| !!! | ATAAAATTGATTTTGACATG+AGG | + | chr7.2:8801266-8801285 | None:intergenic | 20.0% |
| !!! | CTTTTTTTCCAAAAATGAAA+AGG | + | chr7.2:8799817-8799836 | None:intergenic | 20.0% |
| !!! | TGATTTCGTAAAATTGATTT+TGG | - | chr7.2:8800836-8800855 | MS.gene24642:intron | 20.0% |
| !!! | TTGAATTTTTGATACGTTAT+AGG | - | chr7.2:8800649-8800668 | MS.gene24642:intron | 20.0% |
| ! | AAATTTAAGGATTCAATACG+AGG | - | chr7.2:8799895-8799914 | MS.gene24642:intron | 25.0% |
| ! | AAGCTTTCAATGAAAAGAAT+AGG | - | chr7.2:8800696-8800715 | MS.gene24642:intron | 25.0% |
| ! | AATCACATCAACAATTTAAG+AGG | + | chr7.2:8801429-8801448 | None:intergenic | 25.0% |
| ! | AGAAATTGAAAAGAAGAAGA+TGG | - | chr7.2:8799646-8799665 | MS.gene24642:intron | 25.0% |
| ! | AGCTTTCAATGAAAAGAATA+GGG | - | chr7.2:8800697-8800716 | MS.gene24642:intron | 25.0% |
| ! | ATCAACATGCTTATGAAAAA+AGG | + | chr7.2:8800360-8800379 | None:intergenic | 25.0% |
| ! | GCTAATTACTAAATTAATGG+AGG | - | chr7.2:8800730-8800749 | MS.gene24642:intron | 25.0% |
| ! | TAAATTTGAGTGTAGAAGTT+AGG | + | chr7.2:8801075-8801094 | None:intergenic | 25.0% |
| ! | TGAGGGAAAAAAAAAAAAAC+TGG | + | chr7.2:8801218-8801237 | None:intergenic | 25.0% |
| !! | ATTTCAGTTTTACTCAAACT+TGG | - | chr7.2:8799787-8799806 | MS.gene24642:intron | 25.0% |
| !! | TATGTTATTTGAGGAATATC+AGG | - | chr7.2:8800423-8800442 | MS.gene24642:intron | 25.0% |
| !! | TGCAAACTTTATGTTATTTG+AGG | - | chr7.2:8800414-8800433 | MS.gene24642:intron | 25.0% |
| AAATCAATTCTACTCTACCA+AGG | + | chr7.2:8800996-8801015 | None:intergenic | 30.0% | |
| AAATTGTTGATGTGATTAGC+TGG | - | chr7.2:8801432-8801451 | MS.gene24642:CDS | 30.0% | |
| AACAAAGAATTAAAGCCACT+TGG | - | chr7.2:8800514-8800533 | MS.gene24642:CDS | 30.0% | |
| CAAAATATAAACCTCACGAA+TGG | + | chr7.2:8799735-8799754 | None:intergenic | 30.0% | |
| GATCATTCACAAAAACGATT+AGG | + | chr7.2:8800769-8800788 | None:intergenic | 30.0% | |
| GTAATATGTATTTGCTTCTG+CGG | + | chr7.2:8801176-8801195 | None:intergenic | 30.0% | |
| GTATATTCAATGTGTGTGTT+TGG | + | chr7.2:8801322-8801341 | None:intergenic | 30.0% | |
| TCAATTCAATCAACCTTCTT+TGG | - | chr7.2:8800968-8800987 | MS.gene24642:intron | 30.0% | |
| TGGCTGAGGATATTATTTAA+AGG | + | chr7.2:8800323-8800342 | None:intergenic | 30.0% | |
| ! | CTTTTCATTGAAAGCTTCAA+GGG | + | chr7.2:8800693-8800712 | None:intergenic | 30.0% |
| ! | TCTTTTCATTGAAAGCTTCA+AGG | + | chr7.2:8800694-8800713 | None:intergenic | 30.0% |
| ! | TTGGAAACCCTTTTCATTTT+TGG | - | chr7.2:8799806-8799825 | MS.gene24642:intron | 30.0% |
| !! | AAATTGATTTTGACATGAGG+AGG | + | chr7.2:8801263-8801282 | None:intergenic | 30.0% |
| ACTTGATTATACCCGATCTA+TGG | - | chr7.2:8800126-8800145 | MS.gene24642:intron | 35.0% | |
| AGTGAAACTTCTTTCCTCAT+TGG | + | chr7.2:8800469-8800488 | None:intergenic | 35.0% | |
| AGTTGGTTGTACAGAATTCA+GGG | - | chr7.2:8799540-8799559 | MS.gene24642:CDS | 35.0% | |
| ATCTTTAGGCTGATACATGT+GGG | - | chr7.2:8801348-8801367 | MS.gene24642:CDS | 35.0% | |
| GAAAACTCTTATAATTCCCC+TGG | - | chr7.2:8800238-8800257 | MS.gene24642:intron | 35.0% | |
| GTAGTTGTTATGTTGGAATC+TGG | - | chr7.2:8799920-8799939 | MS.gene24642:intron | 35.0% | |
| TATCTTTAGGCTGATACATG+TGG | - | chr7.2:8801347-8801366 | MS.gene24642:CDS | 35.0% | |
| TTCTGACAAGAACAAATCCA+GGG | + | chr7.2:8800258-8800277 | None:intergenic | 35.0% | |
| TTTCTGACAAGAACAAATCC+AGG | + | chr7.2:8800259-8800278 | None:intergenic | 35.0% | |
| ! | AATGTGTGTGTTTGGTTTCT+CGG | + | chr7.2:8801314-8801333 | None:intergenic | 35.0% |
| ! | GTCTGCTCTATCAACTTTTA+GGG | - | chr7.2:8799613-8799632 | MS.gene24642:intron | 35.0% |
| ! | TCTAGAACAGAACCATAGAT+CGG | + | chr7.2:8800141-8800160 | None:intergenic | 35.0% |
| AAGATTGAGGATGAAGAAGC+TGG | - | chr7.2:8801468-8801487 | MS.gene24642:CDS | 40.0% | |
| AAGCAACAGTAACAACCAGT+TGG | - | chr7.2:8799523-8799542 | MS.gene24642:CDS | 40.0% | |
| AGACAAGGTTCAGTTTCAGT+TGG | - | chr7.2:8799676-8799695 | MS.gene24642:intron | 40.0% | |
| AGGAAGATGAAGAGATGTCA+AGG | - | chr7.2:8799591-8799610 | MS.gene24642:intron | 40.0% | |
| CAGTTGGTTGTACAGAATTC+AGG | - | chr7.2:8799539-8799558 | MS.gene24642:CDS | 40.0% | |
| CGAGGAAGTAGTTGTTATGT+TGG | - | chr7.2:8799913-8799932 | MS.gene24642:intron | 40.0% | |
| CTAGAACAGAACCATAGATC+GGG | + | chr7.2:8800140-8800159 | None:intergenic | 40.0% | |
| CTGAATTCTGTACAACCAAC+TGG | + | chr7.2:8799541-8799560 | None:intergenic | 40.0% | |
| CTTTAGCAGTCACTTGTCAA+AGG | - | chr7.2:8799571-8799590 | MS.gene24642:intron | 40.0% | |
| GAAGATGGAAGTTAGAGACA+AGG | - | chr7.2:8799661-8799680 | MS.gene24642:intron | 40.0% | |
| GACAAGGTTCAGTTTCAGTT+GGG | - | chr7.2:8799677-8799696 | MS.gene24642:intron | 40.0% | |
| TCACATCAGAACTACACACT+AGG | + | chr7.2:8800794-8800813 | None:intergenic | 40.0% | |
| TCTGACAAGAACAAATCCAG+GGG | + | chr7.2:8800257-8800276 | None:intergenic | 40.0% | |
| TCTGGTGAACAAGAGTTTGT+TGG | - | chr7.2:8799938-8799957 | MS.gene24642:intron | 40.0% | |
| TCTTTAGGCTGATACATGTG+GGG | - | chr7.2:8801349-8801368 | MS.gene24642:CDS | 40.0% | |
| TGTCCACTTGAGAAACATGA+GGG | + | chr7.2:8801235-8801254 | None:intergenic | 40.0% | |
| TTGTCCACTTGAGAAACATG+AGG | + | chr7.2:8801236-8801255 | None:intergenic | 40.0% | |
| TTTCCCTCATGTTTCTCAAG+TGG | - | chr7.2:8801229-8801248 | MS.gene24642:intron | 40.0% | |
| TTTCCTCATTGGATCTGCAA+GGG | + | chr7.2:8800458-8800477 | None:intergenic | 40.0% | |
| ! | ATCAACCTTCTTTGGTTCCT+TGG | - | chr7.2:8800976-8800995 | MS.gene24642:intron | 40.0% |
| ! | GGTCTGCTCTATCAACTTTT+AGG | - | chr7.2:8799612-8799631 | MS.gene24642:intron | 40.0% |
| ! | TGTTGATGTGATTAGCTGGT+GGG | - | chr7.2:8801436-8801455 | MS.gene24642:CDS | 40.0% |
| ! | TTGTTGATGTGATTAGCTGG+TGG | - | chr7.2:8801435-8801454 | MS.gene24642:CDS | 40.0% |
| ATTGAGGATGAAGAAGCTGG+AGG | - | chr7.2:8801471-8801490 | MS.gene24642:CDS | 45.0% | |
| CATCAGAACTACACACTAGG+AGG | + | chr7.2:8800791-8800810 | None:intergenic | 45.0% | |
| CTCTACCAAGGAACCAAAGA+AGG | + | chr7.2:8800984-8801003 | None:intergenic | 45.0% | |
| CTTTCCTCATTGGATCTGCA+AGG | + | chr7.2:8800459-8800478 | None:intergenic | 45.0% | |
| TAACCTAGCTCACCTTCTTC+TGG | + | chr7.2:8800549-8800568 | None:intergenic | 45.0% | |
| TGGGGGAAAGTGAAAGATTG+AGG | - | chr7.2:8801455-8801474 | MS.gene24642:CDS | 45.0% | |
| ! | GTTGATGTGATTAGCTGGTG+GGG | - | chr7.2:8801437-8801456 | MS.gene24642:CDS | 45.0% |
| ! | TTGATGTGATTAGCTGGTGG+GGG | - | chr7.2:8801438-8801457 | MS.gene24642:CDS | 45.0% |
| AAGCCCTTGCAGATCCAATG+AGG | - | chr7.2:8800452-8800471 | MS.gene24642:intron | 50.0% | |
| ACGTCTTGCTACCATTCGTG+AGG | - | chr7.2:8799721-8799740 | MS.gene24642:intron | 50.0% | |
| TGGTCATACCTGCCAGAAGA+AGG | - | chr7.2:8800534-8800553 | MS.gene24642:CDS | 50.0% | |
| TTCTGGCAGGTATGACCAAG+TGG | + | chr7.2:8800532-8800551 | None:intergenic | 50.0% | |
| CTAGCTCACCTTCTTCTGGC+AGG | + | chr7.2:8800545-8800564 | None:intergenic | 55.0% | |
| CTGCCAGAAGAAGGTGAGCT+AGG | - | chr7.2:8800543-8800562 | MS.gene24642:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 8799509 | 8801531 | 8799509 | ID=MS.gene24642 |
| chr7.2 | mRNA | 8799509 | 8801531 | 8799509 | ID=MS.gene24642.t1;Parent=MS.gene24642 |
| chr7.2 | exon | 8801298 | 8801531 | 8801298 | ID=MS.gene24642.t1.exon1;Parent=MS.gene24642.t1 |
| chr7.2 | CDS | 8801298 | 8801531 | 8801298 | ID=cds.MS.gene24642.t1;Parent=MS.gene24642.t1 |
| chr7.2 | exon | 8800485 | 8800595 | 8800485 | ID=MS.gene24642.t1.exon2;Parent=MS.gene24642.t1 |
| chr7.2 | CDS | 8800485 | 8800595 | 8800485 | ID=cds.MS.gene24642.t1;Parent=MS.gene24642.t1 |
| chr7.2 | exon | 8800289 | 8800369 | 8800289 | ID=MS.gene24642.t1.exon3;Parent=MS.gene24642.t1 |
| chr7.2 | CDS | 8800289 | 8800369 | 8800289 | ID=cds.MS.gene24642.t1;Parent=MS.gene24642.t1 |
| chr7.2 | exon | 8799509 | 8799589 | 8799509 | ID=MS.gene24642.t1.exon4;Parent=MS.gene24642.t1 |
| chr7.2 | CDS | 8799509 | 8799589 | 8799509 | ID=cds.MS.gene24642.t1;Parent=MS.gene24642.t1 |
| Gene Sequence |
| Protein sequence |
