Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24651.t1 | XP_003625765.1 | 100 | 168 | 0 | 0 | 1 | 168 | 1 | 168 | 3.20E-72 | 281.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24651.t1 | G7L5Y6 | 100.0 | 168 | 0 | 0 | 1 | 168 | 1 | 168 | 2.3e-72 | 281.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene24651 | 0.805825 | 1.11E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene24651 | 0.835836 | 1.33E-56 | -1.69E-46 |
| MS.gene050287 | MS.gene24651 | -0.818042 | 2.41E-52 | -1.69E-46 |
| MS.gene050442 | MS.gene24651 | 0.832462 | 9.32E-56 | -1.69E-46 |
| MS.gene050750 | MS.gene24651 | 0.846921 | 1.60E-59 | -1.69E-46 |
| MS.gene050787 | MS.gene24651 | 0.835643 | 1.49E-56 | -1.69E-46 |
| MS.gene050844 | MS.gene24651 | 0.830058 | 3.64E-55 | -1.69E-46 |
| MS.gene050953 | MS.gene24651 | 0.835594 | 1.53E-56 | -1.69E-46 |
| MS.gene051190 | MS.gene24651 | 0.821244 | 4.48E-53 | -1.69E-46 |
| MS.gene051568 | MS.gene24651 | 0.802588 | 5.23E-49 | -1.69E-46 |
| MS.gene051924 | MS.gene24651 | -0.825068 | 5.73E-54 | -1.69E-46 |
| MS.gene051926 | MS.gene24651 | -0.809894 | 1.51E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene24651 | 0.879495 | 1.19E-69 | -1.69E-46 |
| MS.gene052190 | MS.gene24651 | 0.855233 | 7.24E-62 | -1.69E-46 |
| MS.gene052333 | MS.gene24651 | 0.866748 | 2.27E-65 | -1.69E-46 |
| MS.gene052384 | MS.gene24651 | 0.802182 | 6.33E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene24651 | 0.834468 | 2.95E-56 | -1.69E-46 |
| MS.gene052863 | MS.gene24651 | 0.829941 | 3.88E-55 | -1.69E-46 |
| MS.gene05288 | MS.gene24651 | 0.807978 | 3.88E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene24651 | 0.814337 | 1.62E-51 | -1.69E-46 |
| MS.gene053145 | MS.gene24651 | 0.800304 | 1.53E-48 | -1.69E-46 |
| MS.gene053147 | MS.gene24651 | 0.810454 | 1.14E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene24651 | 0.819034 | 1.44E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene24651 | 0.823904 | 1.08E-53 | -1.69E-46 |
| MS.gene054291 | MS.gene24651 | -0.864641 | 1.05E-64 | -1.69E-46 |
| MS.gene054405 | MS.gene24651 | 0.83669 | 8.07E-57 | -1.69E-46 |
| MS.gene054433 | MS.gene24651 | 0.805436 | 1.34E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene24651 | 0.852191 | 5.43E-61 | -1.69E-46 |
| MS.gene054468 | MS.gene24651 | 0.850485 | 1.65E-60 | -1.69E-46 |
| MS.gene054559 | MS.gene24651 | 0.821742 | 3.43E-53 | -1.69E-46 |
| MS.gene054581 | MS.gene24651 | 0.814673 | 1.37E-51 | -1.69E-46 |
| MS.gene05468 | MS.gene24651 | 0.80642 | 8.30E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene24651 | 0.829458 | 5.09E-55 | -1.69E-46 |
| MS.gene054801 | MS.gene24651 | 0.807723 | 4.40E-50 | -1.69E-46 |
| MS.gene055166 | MS.gene24651 | 0.800559 | 1.36E-48 | -1.69E-46 |
| MS.gene055356 | MS.gene24651 | 0.828822 | 7.26E-55 | -1.69E-46 |
| MS.gene055357 | MS.gene24651 | 0.807018 | 6.20E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene24651 | 0.827423 | 1.58E-54 | -1.69E-46 |
| MS.gene055701 | MS.gene24651 | 0.843041 | 1.79E-58 | -1.69E-46 |
| MS.gene055818 | MS.gene24651 | 0.861035 | 1.36E-63 | -1.69E-46 |
| MS.gene055926 | MS.gene24651 | 0.817144 | 3.84E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene24651 | 0.808212 | 3.46E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene24651 | 0.800119 | 1.67E-48 | -1.69E-46 |
| MS.gene057026 | MS.gene24651 | 0.846206 | 2.51E-59 | -1.69E-46 |
| MS.gene058515 | MS.gene24651 | 0.80016 | 1.64E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene24651 | 0.807522 | 4.85E-50 | -1.69E-46 |
| MS.gene059272 | MS.gene24651 | 0.800094 | 1.69E-48 | -1.69E-46 |
| MS.gene059283 | MS.gene24651 | 0.828439 | 8.98E-55 | -1.69E-46 |
| MS.gene059609 | MS.gene24651 | 0.848039 | 7.90E-60 | -1.69E-46 |
| MS.gene059789 | MS.gene24651 | 0.826721 | 2.32E-54 | -1.69E-46 |
| MS.gene059842 | MS.gene24651 | 0.801809 | 7.56E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene24651 | 0.832746 | 7.93E-56 | -1.69E-46 |
| MS.gene060137 | MS.gene24651 | -0.801526 | 8.64E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene24651 | 0.880481 | 5.30E-70 | -1.69E-46 |
| MS.gene06052 | MS.gene24651 | 0.832379 | 9.78E-56 | -1.69E-46 |
| MS.gene060572 | MS.gene24651 | 0.800731 | 1.26E-48 | -1.69E-46 |
| MS.gene060683 | MS.gene24651 | 0.806557 | 7.76E-50 | -1.69E-46 |
| MS.gene060685 | MS.gene24651 | 0.816088 | 6.62E-52 | -1.69E-46 |
| MS.gene060781 | MS.gene24651 | 0.814909 | 1.21E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene24651 | 0.838989 | 2.07E-57 | -1.69E-46 |
| MS.gene060803 | MS.gene24651 | 0.845779 | 3.28E-59 | -1.69E-46 |
| MS.gene061040 | MS.gene24651 | -0.820832 | 5.57E-53 | -1.69E-46 |
| MS.gene061114 | MS.gene24651 | -0.816643 | 4.97E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24651.t1 | MTR_7g104020 | 100.000 | 168 | 0 | 0 | 1 | 168 | 1 | 168 | 2.79e-118 | 331 |
| MS.gene24651.t1 | MTR_7g104020 | 98.246 | 171 | 0 | 1 | 1 | 168 | 1 | 171 | 3.32e-116 | 326 |
| MS.gene24651.t1 | MTR_2g085025 | 69.032 | 155 | 46 | 1 | 14 | 166 | 20 | 174 | 6.12e-63 | 191 |
| MS.gene24651.t1 | MTR_1g492930 | 59.494 | 158 | 61 | 1 | 14 | 168 | 4 | 161 | 6.71e-59 | 181 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24651.t1 | AT2G36410 | 77.564 | 156 | 34 | 1 | 10 | 165 | 38 | 192 | 1.68e-84 | 247 |
| MS.gene24651.t1 | AT2G36410 | 76.101 | 159 | 34 | 2 | 10 | 165 | 38 | 195 | 2.67e-82 | 241 |
| MS.gene24651.t1 | AT3G09980 | 82.911 | 158 | 27 | 0 | 9 | 166 | 21 | 178 | 1.76e-81 | 239 |
| MS.gene24651.t1 | AT3G52920 | 80.137 | 146 | 29 | 0 | 19 | 164 | 17 | 162 | 4.51e-81 | 238 |
| MS.gene24651.t1 | AT3G52920 | 78.523 | 149 | 29 | 1 | 19 | 164 | 17 | 165 | 7.78e-79 | 232 |
| MS.gene24651.t1 | AT5G03660 | 72.785 | 158 | 43 | 0 | 6 | 163 | 12 | 169 | 1.21e-65 | 198 |
| MS.gene24651.t1 | AT2G27740 | 60.526 | 152 | 58 | 1 | 14 | 163 | 19 | 170 | 2.87e-62 | 190 |
| MS.gene24651.t1 | AT2G36410 | 76.415 | 106 | 24 | 1 | 10 | 115 | 38 | 142 | 2.98e-54 | 169 |
| MS.gene24651.t1 | AT5G03660 | 70.504 | 139 | 41 | 0 | 6 | 144 | 12 | 150 | 8.90e-54 | 167 |
| MS.gene24651.t1 | AT3G52900 | 53.659 | 164 | 72 | 2 | 6 | 166 | 2 | 164 | 1.62e-52 | 165 |
| MS.gene24651.t1 | AT5G03660 | 62.025 | 158 | 38 | 1 | 6 | 163 | 12 | 147 | 9.39e-47 | 150 |
| MS.gene24651.t1 | AT2G36355 | 50.331 | 151 | 75 | 0 | 16 | 166 | 5 | 155 | 5.15e-45 | 145 |
| MS.gene24651.t1 | AT2G27740 | 57.692 | 104 | 42 | 1 | 14 | 115 | 19 | 122 | 8.57e-39 | 129 |
| MS.gene24651.t1 | AT2G36355 | 58.621 | 87 | 36 | 0 | 80 | 166 | 27 | 113 | 8.20e-31 | 108 |
| MS.gene24651.t1 | AT2G36355 | 58.333 | 84 | 35 | 0 | 83 | 166 | 1 | 84 | 5.65e-30 | 105 |
| MS.gene24651.t1 | AT2G36355 | 46.000 | 100 | 54 | 0 | 16 | 115 | 5 | 104 | 1.05e-22 | 88.2 |
Find 31 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTGGTTGTACAGAATTC+AGG | 0.260998 | 7.2:+8760001 | MS.gene24651:CDS |
| ACAGCTAATTACTAAATTAA+TGG | 0.284229 | 7.2:+8761189 | MS.gene24651:CDS |
| AAGCTTTCAATGAAAAGAAT+AGG | 0.336763 | 7.2:+8761158 | MS.gene24651:CDS |
| AGTGAAACTTCTTTCCTCAT+TGG | 0.356625 | 7.2:-8760928 | None:intergenic |
| TAACCTAGCTCACCTTCTTC+TGG | 0.386647 | 7.2:-8761008 | None:intergenic |
| AGCTTTCAATGAAAAGAATA+GGG | 0.424472 | 7.2:+8761159 | MS.gene24651:CDS |
| CTTTCCTCATTGGATCTGCA+AGG | 0.450818 | 7.2:-8760918 | None:intergenic |
| AGAAATTGAAAAGAAGAAGA+TGG | 0.462319 | 7.2:+8760108 | MS.gene24651:CDS |
| CTGAATTCTGTACAACCAAC+TGG | 0.468188 | 7.2:-8760000 | None:intergenic |
| AAGATTGAGGATGAAGAAGC+TGG | 0.477057 | 7.2:+8761930 | MS.gene24651:CDS |
| GCTAAATCATTGCATTTGCA+TGG | 0.478899 | 7.2:-8761977 | None:intergenic |
| GACAAGGTTCAGTTTCAGTT+GGG | 0.484764 | 7.2:+8760139 | MS.gene24651:CDS |
| TTTCCTCATTGGATCTGCAA+GGG | 0.489503 | 7.2:-8760917 | None:intergenic |
| AGACAAGGTTCAGTTTCAGT+TGG | 0.495018 | 7.2:+8760138 | MS.gene24651:CDS |
| AGTTGGTTGTACAGAATTCA+GGG | 0.496303 | 7.2:+8760002 | MS.gene24651:CDS |
| TGGTCATACCTGCCAGAAGA+AGG | 0.536387 | 7.2:+8760996 | MS.gene24651:CDS |
| CTTTAGCAGTCACTTGTCAA+AGG | 0.542571 | 7.2:+8760033 | MS.gene24651:CDS |
| CTAGCTCACCTTCTTCTGGC+AGG | 0.555949 | 7.2:-8761004 | None:intergenic |
| TTCTGGCAGGTATGACCAAG+TGG | 0.569790 | 7.2:-8760991 | None:intergenic |
| TGTTGATGTGATTAGCTGGT+GGG | 0.572662 | 7.2:+8761898 | MS.gene24651:intron |
| GTTGATGTGATTAGCTGGTG+GGG | 0.573033 | 7.2:+8761899 | MS.gene24651:intron |
| AGGAAGATGAAGAGATGTCA+AGG | 0.586395 | 7.2:+8760053 | MS.gene24651:CDS |
| AACAAAGAATTAAAGCCACT+TGG | 0.593321 | 7.2:+8760976 | MS.gene24651:CDS |
| TTGATGTGATTAGCTGGTGG+GGG | 0.596450 | 7.2:+8761900 | MS.gene24651:intron |
| GCTAATTACTAAATTAATGG+AGG | 0.597346 | 7.2:+8761192 | MS.gene24651:CDS |
| CAAAATATAAACCTCACGAA+TGG | 0.615296 | 7.2:-8760194 | None:intergenic |
| ACGTCTTGCTACCATTCGTG+AGG | 0.618633 | 7.2:+8760183 | MS.gene24651:CDS |
| GAAGATGGAAGTTAGAGACA+AGG | 0.621610 | 7.2:+8760123 | MS.gene24651:CDS |
| AAGCCCTTGCAGATCCAATG+AGG | 0.655089 | 7.2:+8760914 | MS.gene24651:CDS |
| AAGCAACAGTAACAACCAGT+TGG | 0.659075 | 7.2:+8759985 | MS.gene24651:CDS |
| ATTGAGGATGAAGAAGCTGG+AGG | 0.703230 | 7.2:+8761933 | MS.gene24651:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGGAAAAAAAAAAATAA+TGG | - | chr7.2:8760805-8760824 | None:intergenic | 10.0% |
| !! | AAATCTAAGAAGAAAAAAAA+AGG | - | chr7.2:8760222-8760241 | None:intergenic | 15.0% |
| !! | AACATAAGTACAAAAATTTA+AGG | + | chr7.2:8760344-8760363 | MS.gene24651:intron | 15.0% |
| !! | AATTCAATTTCAAATTTCAA+TGG | - | chr7.2:8761098-8761117 | None:intergenic | 15.0% |
| !! | GAATATACATAAATATCTTT+AGG | + | chr7.2:8761796-8761815 | MS.gene24651:intron | 15.0% |
| !! | TGTAATAATTTGATTAATTG+AGG | + | chr7.2:8760546-8760565 | MS.gene24651:intron | 15.0% |
| !!! | TAAATTTTTGTACTTATGTT+TGG | - | chr7.2:8760344-8760363 | None:intergenic | 15.0% |
| !!! | TTTTTTTCCAAAAATGAAAA+GGG | - | chr7.2:8760278-8760297 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATAATGGCTG+AGG | - | chr7.2:8760799-8760818 | None:intergenic | 20.0% |
| !! | ACAGCTAATTACTAAATTAA+TGG | + | chr7.2:8761189-8761208 | MS.gene24651:CDS | 20.0% |
| !! | ATACATATTACAAATGAGAA+TGG | + | chr7.2:8761647-8761666 | MS.gene24651:intron | 20.0% |
| !!! | AAACTGTTAATTAGTGTTTT+TGG | + | chr7.2:8761048-8761067 | MS.gene24651:intron | 20.0% |
| !!! | AACAAATTTTAGTTTCAAGT+TGG | + | chr7.2:8761387-8761406 | MS.gene24651:intron | 20.0% |
| !!! | ATAAAATTGATTTTGACATG+AGG | - | chr7.2:8761728-8761747 | None:intergenic | 20.0% |
| !!! | CTTTTTTTCCAAAAATGAAA+AGG | - | chr7.2:8760279-8760298 | None:intergenic | 20.0% |
| !!! | TGATTTCGTAAAATTGATTT+TGG | + | chr7.2:8761298-8761317 | MS.gene24651:intron | 20.0% |
| !!! | TTGAATTTTTGATACGTTAT+AGG | + | chr7.2:8761111-8761130 | MS.gene24651:intron | 20.0% |
| ! | AAATTTAAGGATTCAATACG+AGG | + | chr7.2:8760357-8760376 | MS.gene24651:intron | 25.0% |
| ! | AAGCTTTCAATGAAAAGAAT+AGG | + | chr7.2:8761158-8761177 | MS.gene24651:CDS | 25.0% |
| ! | AATCACATCAACAATTTAAG+AGG | - | chr7.2:8761891-8761910 | None:intergenic | 25.0% |
| ! | AGAAATTGAAAAGAAGAAGA+TGG | + | chr7.2:8760108-8760127 | MS.gene24651:CDS | 25.0% |
| ! | AGCTTTCAATGAAAAGAATA+GGG | + | chr7.2:8761159-8761178 | MS.gene24651:CDS | 25.0% |
| ! | ATCAACATGCTTATGAAAAA+AGG | - | chr7.2:8760822-8760841 | None:intergenic | 25.0% |
| ! | GCTAATTACTAAATTAATGG+AGG | + | chr7.2:8761192-8761211 | MS.gene24651:CDS | 25.0% |
| ! | TAAATTTGAGTGTAGAAGTT+AGG | - | chr7.2:8761537-8761556 | None:intergenic | 25.0% |
| ! | TGAGGGAAAAAAAAAAAAAC+TGG | - | chr7.2:8761680-8761699 | None:intergenic | 25.0% |
| !! | ATTTCAGTTTTACTCAAACT+TGG | + | chr7.2:8760249-8760268 | MS.gene24651:intron | 25.0% |
| !! | TATGTTATTTGAGGAATATC+AGG | + | chr7.2:8760885-8760904 | MS.gene24651:intron | 25.0% |
| !! | TGCAAACTTTATGTTATTTG+AGG | + | chr7.2:8760876-8760895 | MS.gene24651:intron | 25.0% |
| AAATCAATTCTACTCTACCA+AGG | - | chr7.2:8761458-8761477 | None:intergenic | 30.0% | |
| AAATTGTTGATGTGATTAGC+TGG | + | chr7.2:8761894-8761913 | MS.gene24651:intron | 30.0% | |
| AACAAAGAATTAAAGCCACT+TGG | + | chr7.2:8760976-8760995 | MS.gene24651:CDS | 30.0% | |
| CAAAATATAAACCTCACGAA+TGG | - | chr7.2:8760197-8760216 | None:intergenic | 30.0% | |
| GATCATTCACAAAAACGATT+AGG | - | chr7.2:8761231-8761250 | None:intergenic | 30.0% | |
| GTAATATGTATTTGCTTCTG+CGG | - | chr7.2:8761638-8761657 | None:intergenic | 30.0% | |
| GTATATTCAATGTGTGTGTT+TGG | - | chr7.2:8761784-8761803 | None:intergenic | 30.0% | |
| TCAATTCAATCAACCTTCTT+TGG | + | chr7.2:8761430-8761449 | MS.gene24651:intron | 30.0% | |
| TGGCTGAGGATATTATTTAA+AGG | - | chr7.2:8760785-8760804 | None:intergenic | 30.0% | |
| ! | CTTTTCATTGAAAGCTTCAA+GGG | - | chr7.2:8761155-8761174 | None:intergenic | 30.0% |
| ! | TCTTTTCATTGAAAGCTTCA+AGG | - | chr7.2:8761156-8761175 | None:intergenic | 30.0% |
| ! | TTGGAAACCCTTTTCATTTT+TGG | + | chr7.2:8760268-8760287 | MS.gene24651:intron | 30.0% |
| !! | AAATTGATTTTGACATGAGG+AGG | - | chr7.2:8761725-8761744 | None:intergenic | 30.0% |
| ACTTGATTATACCCGATCTA+TGG | + | chr7.2:8760588-8760607 | MS.gene24651:intron | 35.0% | |
| AGTGAAACTTCTTTCCTCAT+TGG | - | chr7.2:8760931-8760950 | None:intergenic | 35.0% | |
| AGTTGGTTGTACAGAATTCA+GGG | + | chr7.2:8760002-8760021 | MS.gene24651:CDS | 35.0% | |
| ATCTTTAGGCTGATACATGT+GGG | + | chr7.2:8761810-8761829 | MS.gene24651:intron | 35.0% | |
| GAAAACTCTTATAATTCCCC+TGG | + | chr7.2:8760700-8760719 | MS.gene24651:intron | 35.0% | |
| GTAGTTGTTATGTTGGAATC+TGG | + | chr7.2:8760382-8760401 | MS.gene24651:intron | 35.0% | |
| TATCTTTAGGCTGATACATG+TGG | + | chr7.2:8761809-8761828 | MS.gene24651:intron | 35.0% | |
| TTCTGACAAGAACAAATCCA+GGG | - | chr7.2:8760720-8760739 | None:intergenic | 35.0% | |
| TTTCTGACAAGAACAAATCC+AGG | - | chr7.2:8760721-8760740 | None:intergenic | 35.0% | |
| ! | AATGTGTGTGTTTGGTTTCT+CGG | - | chr7.2:8761776-8761795 | None:intergenic | 35.0% |
| ! | GTCTGCTCTATCAACTTTTA+GGG | + | chr7.2:8760075-8760094 | MS.gene24651:CDS | 35.0% |
| ! | TCTAGAACAGAACCATAGAT+CGG | - | chr7.2:8760603-8760622 | None:intergenic | 35.0% |
| AAGATTGAGGATGAAGAAGC+TGG | + | chr7.2:8761930-8761949 | MS.gene24651:CDS | 40.0% | |
| AAGCAACAGTAACAACCAGT+TGG | + | chr7.2:8759985-8760004 | MS.gene24651:CDS | 40.0% | |
| AGACAAGGTTCAGTTTCAGT+TGG | + | chr7.2:8760138-8760157 | MS.gene24651:CDS | 40.0% | |
| AGGAAGATGAAGAGATGTCA+AGG | + | chr7.2:8760053-8760072 | MS.gene24651:CDS | 40.0% | |
| CAGTTGGTTGTACAGAATTC+AGG | + | chr7.2:8760001-8760020 | MS.gene24651:CDS | 40.0% | |
| CGAGGAAGTAGTTGTTATGT+TGG | + | chr7.2:8760375-8760394 | MS.gene24651:intron | 40.0% | |
| CTAGAACAGAACCATAGATC+GGG | - | chr7.2:8760602-8760621 | None:intergenic | 40.0% | |
| CTGAATTCTGTACAACCAAC+TGG | - | chr7.2:8760003-8760022 | None:intergenic | 40.0% | |
| CTTTAGCAGTCACTTGTCAA+AGG | + | chr7.2:8760033-8760052 | MS.gene24651:CDS | 40.0% | |
| GAAGATGGAAGTTAGAGACA+AGG | + | chr7.2:8760123-8760142 | MS.gene24651:CDS | 40.0% | |
| GACAAGGTTCAGTTTCAGTT+GGG | + | chr7.2:8760139-8760158 | MS.gene24651:CDS | 40.0% | |
| TCACATCAGAACTACACACT+AGG | - | chr7.2:8761256-8761275 | None:intergenic | 40.0% | |
| TCTGACAAGAACAAATCCAG+GGG | - | chr7.2:8760719-8760738 | None:intergenic | 40.0% | |
| TCTGGTGAACAAGAGTTTGT+TGG | + | chr7.2:8760400-8760419 | MS.gene24651:intron | 40.0% | |
| TCTTTAGGCTGATACATGTG+GGG | + | chr7.2:8761811-8761830 | MS.gene24651:intron | 40.0% | |
| TGTCCACTTGAGAAACATGA+GGG | - | chr7.2:8761697-8761716 | None:intergenic | 40.0% | |
| TTGTCCACTTGAGAAACATG+AGG | - | chr7.2:8761698-8761717 | None:intergenic | 40.0% | |
| TTTCCCTCATGTTTCTCAAG+TGG | + | chr7.2:8761691-8761710 | MS.gene24651:intron | 40.0% | |
| TTTCCTCATTGGATCTGCAA+GGG | - | chr7.2:8760920-8760939 | None:intergenic | 40.0% | |
| ! | ATCAACCTTCTTTGGTTCCT+TGG | + | chr7.2:8761438-8761457 | MS.gene24651:intron | 40.0% |
| ! | GGTCTGCTCTATCAACTTTT+AGG | + | chr7.2:8760074-8760093 | MS.gene24651:CDS | 40.0% |
| ! | TGTTGATGTGATTAGCTGGT+GGG | + | chr7.2:8761898-8761917 | MS.gene24651:intron | 40.0% |
| ! | TTGTTGATGTGATTAGCTGG+TGG | + | chr7.2:8761897-8761916 | MS.gene24651:intron | 40.0% |
| ATTGAGGATGAAGAAGCTGG+AGG | + | chr7.2:8761933-8761952 | MS.gene24651:CDS | 45.0% | |
| CATCAGAACTACACACTAGG+AGG | - | chr7.2:8761253-8761272 | None:intergenic | 45.0% | |
| CTCTACCAAGGAACCAAAGA+AGG | - | chr7.2:8761446-8761465 | None:intergenic | 45.0% | |
| CTTTCCTCATTGGATCTGCA+AGG | - | chr7.2:8760921-8760940 | None:intergenic | 45.0% | |
| TAACCTAGCTCACCTTCTTC+TGG | - | chr7.2:8761011-8761030 | None:intergenic | 45.0% | |
| TGGGGGAAAGTGAAAGATTG+AGG | + | chr7.2:8761917-8761936 | MS.gene24651:CDS | 45.0% | |
| ! | GTTGATGTGATTAGCTGGTG+GGG | + | chr7.2:8761899-8761918 | MS.gene24651:intron | 45.0% |
| ! | TTGATGTGATTAGCTGGTGG+GGG | + | chr7.2:8761900-8761919 | MS.gene24651:intron | 45.0% |
| AAGCCCTTGCAGATCCAATG+AGG | + | chr7.2:8760914-8760933 | MS.gene24651:CDS | 50.0% | |
| ACGTCTTGCTACCATTCGTG+AGG | + | chr7.2:8760183-8760202 | MS.gene24651:CDS | 50.0% | |
| TGGTCATACCTGCCAGAAGA+AGG | + | chr7.2:8760996-8761015 | MS.gene24651:CDS | 50.0% | |
| TTCTGGCAGGTATGACCAAG+TGG | - | chr7.2:8760994-8761013 | None:intergenic | 50.0% | |
| CTAGCTCACCTTCTTCTGGC+AGG | - | chr7.2:8761007-8761026 | None:intergenic | 55.0% | |
| CTGCCAGAAGAAGGTGAGCT+AGG | + | chr7.2:8761005-8761024 | MS.gene24651:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 8759971 | 8761993 | 8759971 | ID=MS.gene24651 |
| chr7.2 | mRNA | 8759971 | 8761993 | 8759971 | ID=MS.gene24651.t1;Parent=MS.gene24651 |
| chr7.2 | exon | 8759971 | 8760204 | 8759971 | ID=MS.gene24651.t1.exon1;Parent=MS.gene24651.t1 |
| chr7.2 | CDS | 8759971 | 8760204 | 8759971 | ID=cds.MS.gene24651.t1;Parent=MS.gene24651.t1 |
| chr7.2 | exon | 8760907 | 8761017 | 8760907 | ID=MS.gene24651.t1.exon2;Parent=MS.gene24651.t1 |
| chr7.2 | CDS | 8760907 | 8761017 | 8760907 | ID=cds.MS.gene24651.t1;Parent=MS.gene24651.t1 |
| chr7.2 | exon | 8761133 | 8761213 | 8761133 | ID=MS.gene24651.t1.exon3;Parent=MS.gene24651.t1 |
| chr7.2 | CDS | 8761133 | 8761213 | 8761133 | ID=cds.MS.gene24651.t1;Parent=MS.gene24651.t1 |
| chr7.2 | exon | 8761913 | 8761993 | 8761913 | ID=MS.gene24651.t1.exon4;Parent=MS.gene24651.t1 |
| chr7.2 | CDS | 8761913 | 8761993 | 8761913 | ID=cds.MS.gene24651.t1;Parent=MS.gene24651.t1 |
| Gene Sequence |
| Protein sequence |
