Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050311.t1 | XP_007162394.1 | 100 | 93 | 0 | 0 | 1 | 93 | 33 | 125 | 1.10E-45 | 192.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050311.t1 | Q1H595 | 93.5 | 93 | 6 | 0 | 1 | 93 | 1 | 93 | 1.6e-45 | 183.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050311.t1 | G7KQV7 | 100.0 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 7.8e-46 | 192.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050311 | MS.gene83565 | PPI |
| MS.gene050311 | MS.gene067444 | PPI |
| MS.gene050311 | MS.gene93333 | PPI |
| MS.gene051241 | MS.gene050311 | PPI |
| MS.gene050311 | MS.gene85931 | PPI |
| MS.gene050311 | MS.gene23567 | PPI |
| MS.gene050311 | MS.gene86968 | PPI |
| MS.gene050311 | MS.gene009798 | PPI |
| MS.gene050311 | MS.gene56983 | PPI |
| MS.gene59503 | MS.gene050311 | PPI |
| MS.gene050311 | MS.gene023131 | PPI |
| MS.gene50211 | MS.gene050311 | PPI |
| MS.gene050311 | MS.gene028322 | PPI |
| MS.gene44813 | MS.gene050311 | PPI |
| MS.gene050311 | MS.gene006962 | PPI |
| MS.gene050311 | MS.gene67483 | PPI |
| MS.gene050311 | MS.gene055162 | PPI |
| MS.gene050311 | MS.gene25097 | PPI |
| MS.gene006712 | MS.gene050311 | PPI |
| MS.gene050311 | MS.gene035486 | PPI |
| MS.gene050311 | MS.gene36469 | PPI |
| MS.gene050311 | MS.gene051172 | PPI |
| MS.gene050311 | MS.gene35136 | PPI |
| MS.gene050311 | MS.gene040757 | PPI |
| MS.gene64804 | MS.gene050311 | PPI |
| MS.gene050311 | MS.gene051245 | PPI |
| MS.gene43700 | MS.gene050311 | PPI |
| MS.gene050311 | MS.gene073734 | PPI |
| MS.gene045470 | MS.gene050311 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050311.t1 | MTR_7g104700 | 100.000 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 1.37e-65 | 192 |
| MS.gene050311.t1 | MTR_7g094500 | 98.925 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 4.69e-65 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050311.t1 | AT1G03330 | 93.548 | 93 | 6 | 0 | 1 | 93 | 1 | 93 | 8.41e-62 | 182 |
Find 25 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCATACTTCAAAGATT+TGG | 0.289749 | 7.2:-8227146 | MS.gene050311:CDS |
| AGTTCAATGTCCACGCCTTC+TGG | 0.312744 | 7.2:+8223780 | None:intergenic |
| CAAGCTTGATGTTGAGGTAT+TGG | 0.349777 | 7.2:+8227056 | None:intergenic |
| TGCCACAAGGAGAGAAGCCC+GGG | 0.397676 | 7.2:-8223748 | MS.gene050311:CDS |
| TTTGGTGGGAAGAGAAGTTA+CGG | 0.430070 | 7.2:-8227128 | MS.gene050311:CDS |
| CTCATACTTCAAAGATTTGG+TGG | 0.453220 | 7.2:-8227143 | MS.gene050311:CDS |
| TTTGATGTCAGCTTTCTGTA+AGG | 0.476052 | 7.2:-8223848 | MS.gene050311:intron |
| ATGCCACAAGGAGAGAAGCC+CGG | 0.530400 | 7.2:-8223749 | MS.gene050311:CDS |
| GCAATTGCCGCCAGAAGGCG+TGG | 0.554183 | 7.2:-8223790 | MS.gene050311:CDS |
| TCATACTTCAAAGATTTGGT+GGG | 0.556853 | 7.2:-8227142 | MS.gene050311:CDS |
| ACCCCGGGCTTCTCTCCTTG+TGG | 0.566921 | 7.2:+8223746 | None:intergenic |
| TACGTGCAATTGCCGCCAGA+AGG | 0.591585 | 7.2:-8223795 | MS.gene050311:CDS |
| AGAATGCAATGTGCCTCTGA+TGG | 0.594400 | 7.2:+8227084 | None:intergenic |
| CTGCTTCATCAGAGGATCAG+TGG | 0.596818 | 7.2:-8223823 | MS.gene050311:CDS |
| AACTATTGCACGATGCCACA+AGG | 0.598329 | 7.2:-8223761 | MS.gene050311:CDS |
| GAAAAGAAGATACCATGTGA+GGG | 0.601619 | 7.2:+8227002 | None:intergenic |
| ATAACAAAATCAACCACCCC+GGG | 0.612233 | 7.2:+8223731 | None:intergenic |
| GTAAGGAACTGCTTCATCAG+AGG | 0.623322 | 7.2:-8223831 | MS.gene050311:CDS |
| TCAATGTCCACGCCTTCTGG+CGG | 0.635143 | 7.2:+8223783 | None:intergenic |
| AGAAAAGAAGATACCATGTG+AGG | 0.650738 | 7.2:+8227001 | None:intergenic |
| AAGAACGATTTAGCCATCAG+AGG | 0.666365 | 7.2:-8227097 | MS.gene050311:CDS |
| AATAACAAAATCAACCACCC+CGG | 0.669310 | 7.2:+8223730 | None:intergenic |
| TCAAGACAAGTACCCTCACA+TGG | 0.691465 | 7.2:-8227014 | MS.gene050311:intron |
| ACAAGGAGAGAAGCCCGGGG+TGG | 0.693695 | 7.2:-8223744 | MS.gene050311:CDS |
| GCCACAAGGAGAGAAGCCCG+GGG | 0.723642 | 7.2:-8223747 | MS.gene050311:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTAAATTTGGATATT+TGG | - | chr7.2:8224863-8224882 | MS.gene050311:intron | 10.0% |
| !! | AGATATTCAAAATTTAAATT+TGG | - | chr7.2:8224855-8224874 | MS.gene050311:intron | 10.0% |
| !!! | ATCTTCTTTTTTTTTTTTTA+AGG | + | chr7.2:8226216-8226235 | None:intergenic | 10.0% |
| !!! | ATTTTCTGTTTAAAAATTTA+GGG | - | chr7.2:8225230-8225249 | MS.gene050311:intron | 10.0% |
| !!! | TTAAATCTAATTTTGTTTTA+GGG | - | chr7.2:8224951-8224970 | MS.gene050311:intron | 10.0% |
| !! | AGGTAAAATATCATAATTAA+AGG | - | chr7.2:8225999-8226018 | MS.gene050311:intron | 15.0% |
| !! | TAATTATAGCAATAATAGTA+GGG | - | chr7.2:8225779-8225798 | MS.gene050311:intron | 15.0% |
| !!! | ATTTGATTCTATTTTTGTTA+TGG | - | chr7.2:8227078-8227097 | MS.gene050311:CDS | 15.0% |
| !!! | CTTAAATCTAATTTTGTTTT+AGG | - | chr7.2:8224950-8224969 | MS.gene050311:intron | 15.0% |
| !!! | GATTTTCTGTTTAAAAATTT+AGG | - | chr7.2:8225229-8225248 | MS.gene050311:intron | 15.0% |
| !!! | TTTTCTGTTTAAAAATTTAG+GGG | - | chr7.2:8225231-8225250 | MS.gene050311:intron | 15.0% |
| !!! | TTTTTAGCTTTATGAAAAAA+TGG | + | chr7.2:8225268-8225287 | None:intergenic | 15.0% |
| !! | AAATTAATGCACAAAAGTAA+AGG | + | chr7.2:8224762-8224781 | None:intergenic | 20.0% |
| !! | AATTATAGCAATAATAGTAG+GGG | - | chr7.2:8225780-8225799 | MS.gene050311:intron | 20.0% |
| !! | ACTTCAATAGAAATCAATAA+TGG | + | chr7.2:8224693-8224712 | None:intergenic | 20.0% |
| !! | AGCTTCAGTTATAAAAAAAA+AGG | - | chr7.2:8226317-8226336 | MS.gene050311:intron | 20.0% |
| !! | ATAAGATAAAAACCACAATT+TGG | + | chr7.2:8225964-8225983 | None:intergenic | 20.0% |
| !! | CTCAAAATTTAAACATGAAA+TGG | - | chr7.2:8224480-8224499 | MS.gene050311:intron | 20.0% |
| !! | CTGATATAAAAATCCTAATA+GGG | - | chr7.2:8224256-8224275 | MS.gene050311:intron | 20.0% |
| !! | GCTTGTTTATATTCAATTAA+TGG | - | chr7.2:8226678-8226697 | MS.gene050311:intron | 20.0% |
| !! | GTAATTATAGCAATAATAGT+AGG | - | chr7.2:8225778-8225797 | MS.gene050311:intron | 20.0% |
| !! | TACATATAGATAAAGAGTAA+AGG | - | chr7.2:8226810-8226829 | MS.gene050311:intron | 20.0% |
| !! | TATCATAGAATAGATAAACA+AGG | - | chr7.2:8226854-8226873 | MS.gene050311:intron | 20.0% |
| !! | TCTGATATAAAAATCCTAAT+AGG | - | chr7.2:8224255-8224274 | MS.gene050311:intron | 20.0% |
| !! | TGATATAAAAATCCTAATAG+GGG | - | chr7.2:8224257-8224276 | MS.gene050311:intron | 20.0% |
| !!! | ATCAACAATGCTTTAAATAA+TGG | + | chr7.2:8224590-8224609 | None:intergenic | 20.0% |
| !!! | TATTGTTTTTGTAGGAATTT+TGG | - | chr7.2:8225330-8225349 | MS.gene050311:intron | 20.0% |
| !!! | TCATGTTTAAATTTTGAGTT+TGG | + | chr7.2:8224478-8224497 | None:intergenic | 20.0% |
| !!! | TGTCTTAAAAGTTTTATTCA+AGG | - | chr7.2:8225697-8225716 | MS.gene050311:intron | 20.0% |
| !!! | TTGAAATTGAGAAGTATATT+AGG | - | chr7.2:8225920-8225939 | MS.gene050311:intron | 20.0% |
| !!! | TTTGGAATTATTGTTTTTGT+AGG | - | chr7.2:8225322-8225341 | MS.gene050311:intron | 20.0% |
| ! | AACCAATAAATAAGCACATA+AGG | + | chr7.2:8225092-8225111 | None:intergenic | 25.0% |
| ! | AACTATTGGATTAAGAAAGA+TGG | - | chr7.2:8224559-8224578 | MS.gene050311:intron | 25.0% |
| ! | AATATAAACAAGCTCAAACA+AGG | + | chr7.2:8226671-8226690 | None:intergenic | 25.0% |
| ! | ACCATAAGACTTAAAAATTG+TGG | + | chr7.2:8226724-8226743 | None:intergenic | 25.0% |
| ! | ACTATGATAGAATATCATTG+AGG | - | chr7.2:8224403-8224422 | MS.gene050311:intron | 25.0% |
| ! | ACTATTGGATTAAGAAAGAT+GGG | - | chr7.2:8224560-8224579 | MS.gene050311:intron | 25.0% |
| ! | ATGAACACTAAATCATTGTT+GGG | - | chr7.2:8224134-8224153 | MS.gene050311:intron | 25.0% |
| ! | ATTGTTACGTAGAAAAGATT+GGG | + | chr7.2:8226598-8226617 | None:intergenic | 25.0% |
| ! | CATAAGACTTAAAAATTGTG+GGG | + | chr7.2:8226722-8226741 | None:intergenic | 25.0% |
| ! | CCATAAGACTTAAAAATTGT+GGG | + | chr7.2:8226723-8226742 | None:intergenic | 25.0% |
| ! | GTTCATCTGTTAATATGAAA+TGG | - | chr7.2:8225592-8225611 | MS.gene050311:intron | 25.0% |
| ! | TATCCTAATTGTTCATGAAT+CGG | - | chr7.2:8225854-8225873 | MS.gene050311:intron | 25.0% |
| ! | TCCTTATCTTTAATCTATGT+GGG | + | chr7.2:8224178-8224197 | None:intergenic | 25.0% |
| ! | TCTCTATAGCTCAATAAAAT+AGG | - | chr7.2:8224909-8224928 | MS.gene050311:intron | 25.0% |
| ! | TTTAAACAGAGTTGGATAAT+TGG | - | chr7.2:8225746-8225765 | MS.gene050311:intron | 25.0% |
| ! | TTTACAAGGATATTTGCAAA+AGG | - | chr7.2:8226880-8226899 | MS.gene050311:intron | 25.0% |
| !! | AAAATCTGCATTAGGTTTTT+GGG | - | chr7.2:8225507-8225526 | MS.gene050311:intron | 25.0% |
| !! | ACAGATCAAAATAGCATTTT+CGG | + | chr7.2:8224621-8224640 | None:intergenic | 25.0% |
| !! | CTTAATTTGATTAACCTAAC+TGG | - | chr7.2:8227049-8227068 | MS.gene050311:CDS | 25.0% |
| !! | CTTTTATCTATGCTAAATGT+TGG | - | chr7.2:8225670-8225689 | MS.gene050311:intron | 25.0% |
| !! | GATAAACAAGGAATTTTACA+AGG | - | chr7.2:8226866-8226885 | MS.gene050311:intron | 25.0% |
| !! | GTTGATATATCTCCTTTTAA+TGG | + | chr7.2:8226773-8226792 | None:intergenic | 25.0% |
| !! | TAAAATCTGCATTAGGTTTT+TGG | - | chr7.2:8225506-8225525 | MS.gene050311:intron | 25.0% |
| !! | TCTTGTTTAAAATCTGCATT+AGG | - | chr7.2:8225499-8225518 | MS.gene050311:intron | 25.0% |
| !! | TTGTGGTTTTTATCTTATGT+AGG | - | chr7.2:8225966-8225985 | MS.gene050311:intron | 25.0% |
| !!! | CTTAAAAGTTTTATTCAAGG+AGG | - | chr7.2:8225700-8225719 | MS.gene050311:intron | 25.0% |
| !!! | GAAGTTTTTGCTATTGTTAA+AGG | - | chr7.2:8224708-8224727 | MS.gene050311:intron | 25.0% |
| !!! | TATATTAGGATTTTGGAGTA+AGG | - | chr7.2:8225934-8225953 | MS.gene050311:intron | 25.0% |
| !!! | TATTTTGGAATGCCATTAAA+AGG | - | chr7.2:8226758-8226777 | MS.gene050311:intron | 25.0% |
| !!! | TGAAACTGTATGTTATTTTC+TGG | - | chr7.2:8227005-8227024 | MS.gene050311:intron | 25.0% |
| !!! | TGAGAAGTATATTAGGATTT+TGG | - | chr7.2:8225927-8225946 | MS.gene050311:intron | 25.0% |
| AACAATAATTCCAAACAGCA+TGG | + | chr7.2:8225317-8225336 | None:intergenic | 30.0% | |
| AAGGAATGAATGTGTTTGAA+AGG | - | chr7.2:8226256-8226275 | MS.gene050311:intron | 30.0% | |
| AATTAATGGCTGTGTTTGAA+TGG | - | chr7.2:8226692-8226711 | MS.gene050311:intron | 30.0% | |
| ACAATTAGGATAACAGAACT+AGG | + | chr7.2:8225846-8225865 | None:intergenic | 30.0% | |
| ACATAATCTGATTCATGTGA+AGG | + | chr7.2:8225361-8225380 | None:intergenic | 30.0% | |
| ATAAACTCATAAGTGAGGTT+GGG | - | chr7.2:8224357-8224376 | MS.gene050311:intron | 30.0% | |
| ATAAATACACTGCACTATCA+AGG | + | chr7.2:8224317-8224336 | None:intergenic | 30.0% | |
| ATCCTAATTGTTCATGAATC+GGG | - | chr7.2:8225855-8225874 | MS.gene050311:intron | 30.0% | |
| ATGTGATAAACTCATAAGTG+AGG | - | chr7.2:8224352-8224371 | MS.gene050311:intron | 30.0% | |
| CATATTCTGCGAATAACTAT+TGG | - | chr7.2:8224545-8224564 | MS.gene050311:intron | 30.0% | |
| CATGAACACTAAATCATTGT+TGG | - | chr7.2:8224133-8224152 | MS.gene050311:intron | 30.0% | |
| CTTATGTAGGATCATAATGA+AGG | - | chr7.2:8225979-8225998 | MS.gene050311:intron | 30.0% | |
| CTTCTCATACTTCAAAGATT+TGG | - | chr7.2:8223825-8223844 | MS.gene050311:CDS | 30.0% | |
| GATTGTTACGTAGAAAAGAT+TGG | + | chr7.2:8226599-8226618 | None:intergenic | 30.0% | |
| GTCCTTATCTTTAATCTATG+TGG | + | chr7.2:8224179-8224198 | None:intergenic | 30.0% | |
| TAAAAGTCATTACCAGTGTT+AGG | + | chr7.2:8225405-8225424 | None:intergenic | 30.0% | |
| TAGGAAAGATGAACATTAGT+AGG | + | chr7.2:8225827-8225846 | None:intergenic | 30.0% | |
| TATCCAACTCTGTTTAAATG+TGG | + | chr7.2:8225744-8225763 | None:intergenic | 30.0% | |
| TCCAAAATAACCTATAGTTC+AGG | + | chr7.2:8226747-8226766 | None:intergenic | 30.0% | |
| TCCCACATAGATTAAAGATA+AGG | - | chr7.2:8224174-8224193 | MS.gene050311:intron | 30.0% | |
| TGACTAGAGTTTATAAAGAG+AGG | - | chr7.2:8224199-8224218 | MS.gene050311:intron | 30.0% | |
| TGCACTATCAAGGTAAAATA+GGG | + | chr7.2:8224307-8224326 | None:intergenic | 30.0% | |
| TGCCTTATGTGCTTATTTAT+TGG | - | chr7.2:8225087-8225106 | MS.gene050311:intron | 30.0% | |
| TTAACTCATCCTTACAAAAC+TGG | + | chr7.2:8224234-8224253 | None:intergenic | 30.0% | |
| ! | AAATCTGCATTAGGTTTTTG+GGG | - | chr7.2:8225508-8225527 | MS.gene050311:intron | 30.0% |
| ! | AATCAAATCTGAAACCAGTT+AGG | + | chr7.2:8227066-8227085 | None:intergenic | 30.0% |
| ! | ATGAAAATTCAGAAAGCACA+CGG | + | chr7.2:8223775-8223794 | None:intergenic | 30.0% |
| ! | GTTAAGATTCCTTGTTTACT+CGG | + | chr7.2:8226646-8226665 | None:intergenic | 30.0% |
| ! | TATCTTCTTTTCTCTCTCTA+GGG | - | chr7.2:8223980-8223999 | MS.gene050311:intron | 30.0% |
| ! | TCATACTTCAAAGATTTGGT+GGG | - | chr7.2:8223829-8223848 | MS.gene050311:CDS | 30.0% |
| ! | TCCTGAACTATAGGTTATTT+TGG | - | chr7.2:8226743-8226762 | MS.gene050311:intron | 30.0% |
| !! | TATTTTCAAGCTTGATGTTG+AGG | + | chr7.2:8223924-8223943 | None:intergenic | 30.0% |
| !!! | CCCACAATTTTTAAGTCTTA+TGG | - | chr7.2:8226720-8226739 | MS.gene050311:intron | 30.0% |
| AAACACATTCATTCCTTCTC+AGG | + | chr7.2:8226253-8226272 | None:intergenic | 35.0% | |
| AAAGGGAAATCATGCATCAA+TGG | + | chr7.2:8224797-8224816 | None:intergenic | 35.0% | |
| AAGGTTTGCAGAAATTACCT+TGG | - | chr7.2:8226899-8226918 | MS.gene050311:intron | 35.0% | |
| AAGTAGAACTATGTCTCTCA+TGG | - | chr7.2:8225289-8225308 | MS.gene050311:intron | 35.0% | |
| ACCAAAACAAAATTTCCTGG+TGG | + | chr7.2:8225066-8225085 | None:intergenic | 35.0% | |
| AGAAAAGAAGATACCATGTG+AGG | + | chr7.2:8223973-8223992 | None:intergenic | 35.0% | |
| AGATTGAATATGTAACCACC+AGG | - | chr7.2:8225048-8225067 | MS.gene050311:intron | 35.0% | |
| ATCCTTACAAAACTGGTGAA+GGG | + | chr7.2:8224227-8224246 | None:intergenic | 35.0% | |
| ATGAATGTGTTTGAAAGGTC+TGG | - | chr7.2:8226261-8226280 | MS.gene050311:intron | 35.0% | |
| CACACCAAAACAAAATTTCC+TGG | + | chr7.2:8225069-8225088 | None:intergenic | 35.0% | |
| CACTATCAAGGTAAAATAGG+GGG | + | chr7.2:8224305-8224324 | None:intergenic | 35.0% | |
| CATCCACATTTAAACAGAGT+TGG | - | chr7.2:8225738-8225757 | MS.gene050311:intron | 35.0% | |
| CTAAATCATTGTTGGGCTAT+TGG | - | chr7.2:8224141-8224160 | MS.gene050311:intron | 35.0% | |
| CTCATACTTCAAAGATTTGG+TGG | - | chr7.2:8223828-8223847 | MS.gene050311:CDS | 35.0% | |
| CTGCACTATCAAGGTAAAAT+AGG | + | chr7.2:8224308-8224327 | None:intergenic | 35.0% | |
| CTTGATCGACATGCTATAAA+GGG | + | chr7.2:8224814-8224833 | None:intergenic | 35.0% | |
| CTTGGTTATGTTGTGAATTG+AGG | - | chr7.2:8225141-8225160 | MS.gene050311:intron | 35.0% | |
| GAAAAGAAGATACCATGTGA+GGG | + | chr7.2:8223972-8223991 | None:intergenic | 35.0% | |
| GAGTTGGATAATTGGTAAGT+CGG | - | chr7.2:8225754-8225773 | MS.gene050311:intron | 35.0% | |
| GATAAACTCATAAGTGAGGT+TGG | - | chr7.2:8224356-8224375 | MS.gene050311:intron | 35.0% | |
| GCACTATCAAGGTAAAATAG+GGG | + | chr7.2:8224306-8224325 | None:intergenic | 35.0% | |
| GTTAATGTTGCTGTAGATCT+TGG | - | chr7.2:8225123-8225142 | MS.gene050311:intron | 35.0% | |
| TAAACTCATAAGTGAGGTTG+GGG | - | chr7.2:8224358-8224377 | MS.gene050311:intron | 35.0% | |
| TAACGAAAGCAATTTGTCAG+TGG | + | chr7.2:8225650-8225669 | None:intergenic | 35.0% | |
| TACGTAACAATCCTCTATGT+GGG | - | chr7.2:8226607-8226626 | MS.gene050311:intron | 35.0% | |
| TCTTTAATCTATGTGGGACT+TGG | + | chr7.2:8224172-8224191 | None:intergenic | 35.0% | |
| TGAAGAAAGAAAAACTGCAG+AGG | - | chr7.2:8225196-8225215 | MS.gene050311:intron | 35.0% | |
| TGTTTATGCACTTAGGAGTT+AGG | - | chr7.2:8224992-8225011 | MS.gene050311:intron | 35.0% | |
| TTAGGAGTTAGGAATACAAG+AGG | - | chr7.2:8225003-8225022 | MS.gene050311:intron | 35.0% | |
| TTTCACTTTATGCGTGCATA+AGG | + | chr7.2:8226990-8227009 | None:intergenic | 35.0% | |
| TTTGATGTCAGCTTTCTGTA+AGG | - | chr7.2:8227123-8227142 | MS.gene050311:CDS | 35.0% | |
| ! | AGGTTTCTCGTTTTCATGTT+TGG | - | chr7.2:8225539-8225558 | MS.gene050311:intron | 35.0% |
| ! | GTATCTTCTTTTCTCTCTCT+AGG | - | chr7.2:8223979-8223998 | MS.gene050311:intron | 35.0% |
| ! | TTTAGCTTATGATCTGCGAT+AGG | - | chr7.2:8225431-8225450 | MS.gene050311:intron | 35.0% |
| !! | ACCACCAGGAAATTTTGTTT+TGG | - | chr7.2:8225062-8225081 | MS.gene050311:intron | 35.0% |
| !! | TAGGGTTGTTTGTTGTTTGA+GGG | - | chr7.2:8224969-8224988 | MS.gene050311:intron | 35.0% |
| !! | TTAGGGTTGTTTGTTGTTTG+AGG | - | chr7.2:8224968-8224987 | MS.gene050311:intron | 35.0% |
| !!! | GAGATCGTTATAGTTTTGTG+AGG | + | chr7.2:8226544-8226563 | None:intergenic | 35.0% |
| AAAAACCTAGCTCAAAGCGT+CGG | - | chr7.2:8224447-8224466 | MS.gene050311:intron | 40.0% | |
| AAAAACTGCAGAGGAAGGAA+AGG | - | chr7.2:8225205-8225224 | MS.gene050311:intron | 40.0% | |
| AAAACTGCAGAGGAAGGAAA+GGG | - | chr7.2:8225206-8225225 | MS.gene050311:intron | 40.0% | |
| AAGAACGATTTAGCCATCAG+AGG | - | chr7.2:8223874-8223893 | MS.gene050311:intron | 40.0% | |
| AGAGAGGAGAGAAAGACAAT+GGG | - | chr7.2:8226379-8226398 | MS.gene050311:intron | 40.0% | |
| AGAGTAAAGGACAAACACCT+AGG | - | chr7.2:8226823-8226842 | MS.gene050311:intron | 40.0% | |
| AGAGTAAGAGAGGTTTAGAG+AGG | - | chr7.2:8226363-8226382 | MS.gene050311:intron | 40.0% | |
| AGTTAGGAATACAAGAGGCT+CGG | - | chr7.2:8225008-8225027 | MS.gene050311:intron | 40.0% | |
| CAAGCTTGATGTTGAGGTAT+TGG | + | chr7.2:8223918-8223937 | None:intergenic | 40.0% | |
| CAGTGTTAGGAGTTGAAGAA+TGG | + | chr7.2:8225392-8225411 | None:intergenic | 40.0% | |
| CATCCTTACAAAACTGGTGA+AGG | + | chr7.2:8224228-8224247 | None:intergenic | 40.0% | |
| CATTCTTCAACTCCTAACAC+TGG | - | chr7.2:8225390-8225409 | MS.gene050311:intron | 40.0% | |
| CCACATATGCACAATAAGCA+AGG | - | chr7.2:8224664-8224683 | MS.gene050311:intron | 40.0% | |
| CCTTGCTTATTGTGCATATG+TGG | + | chr7.2:8224667-8224686 | None:intergenic | 40.0% | |
| CTACGTAACAATCCTCTATG+TGG | - | chr7.2:8226606-8226625 | MS.gene050311:intron | 40.0% | |
| CTCCCGATTCATGAACAATT+AGG | + | chr7.2:8225860-8225879 | None:intergenic | 40.0% | |
| GAAAGAAAAACTGCAGAGGA+AGG | - | chr7.2:8225200-8225219 | MS.gene050311:intron | 40.0% | |
| GAGTAAGGCTTTCCAAATTG+TGG | - | chr7.2:8225949-8225968 | MS.gene050311:intron | 40.0% | |
| GCAACTATACTATACCAACC+AGG | + | chr7.2:8224093-8224112 | None:intergenic | 40.0% | |
| GCTTGATCGACATGCTATAA+AGG | + | chr7.2:8224815-8224834 | None:intergenic | 40.0% | |
| GTCTTATGGTCCTGAACTAT+AGG | - | chr7.2:8226734-8226753 | MS.gene050311:intron | 40.0% | |
| GTTACGTAGAAAAGATTGGG+TGG | + | chr7.2:8226595-8226614 | None:intergenic | 40.0% | |
| GTTCAAATAAGAGCCTGAGA+AGG | - | chr7.2:8226237-8226256 | MS.gene050311:intron | 40.0% | |
| TAGAGAGGAGAGAAAGACAA+TGG | - | chr7.2:8226378-8226397 | MS.gene050311:intron | 40.0% | |
| TAGATGAGACAGAGTAAGAG+AGG | - | chr7.2:8226353-8226372 | MS.gene050311:intron | 40.0% | |
| TCTATGATAGCAGCATACCT+AGG | + | chr7.2:8226843-8226862 | None:intergenic | 40.0% | |
| TGAATCGGGAGACATTGAAA+CGG | - | chr7.2:8225869-8225888 | MS.gene050311:intron | 40.0% | |
| TGCCATGTGTTTCAATTCGA+AGG | - | chr7.2:8224110-8224129 | MS.gene050311:intron | 40.0% | |
| TGCCTTCGAATTGAAACACA+TGG | + | chr7.2:8224115-8224134 | None:intergenic | 40.0% | |
| TTTGGTGGGAAGAGAAGTTA+CGG | - | chr7.2:8223843-8223862 | MS.gene050311:intron | 40.0% | |
| ! | AAGATTCCTTGTTTACTCGG+AGG | + | chr7.2:8226643-8226662 | None:intergenic | 40.0% |
| ! | AGATTCCTTGTTTACTCGGA+GGG | + | chr7.2:8226642-8226661 | None:intergenic | 40.0% |
| ! | CACATAGATTAGTTCCTGGT+TGG | - | chr7.2:8224076-8224095 | MS.gene050311:intron | 40.0% |
| ! | CTCTCACATAGATTAGTTCC+TGG | - | chr7.2:8224072-8224091 | MS.gene050311:intron | 40.0% |
| ! | CTGATAATGACACAAAGCCA+GGG | + | chr7.2:8226491-8226510 | None:intergenic | 40.0% |
| !! | TTGAGGGTGTTTATGCACTT+AGG | - | chr7.2:8224985-8225004 | MS.gene050311:intron | 40.0% |
| !!! | AGGTTTTTGGGGTCAACATT+AGG | - | chr7.2:8225519-8225538 | MS.gene050311:intron | 40.0% |
| AAACTGCAGAGGAAGGAAAG+GGG | - | chr7.2:8225207-8225226 | MS.gene050311:intron | 45.0% | |
| AACTATTGCACGATGCCACA+AGG | - | chr7.2:8227210-8227229 | MS.gene050311:intron | 45.0% | |
| AAGATTGGGTGGAATCTCCA+TGG | + | chr7.2:8226584-8226603 | None:intergenic | 45.0% | |
| ACGGAGAAGAAACAGAGAAG+AGG | + | chr7.2:8223756-8223775 | None:intergenic | 45.0% | |
| AGAATGCAATGTGCCTCTGA+TGG | + | chr7.2:8223890-8223909 | None:intergenic | 45.0% | |
| AGACATGGATAGAGGTTCGA+CGG | - | chr7.2:8226407-8226426 | MS.gene050311:intron | 45.0% | |
| AGATGAAGCAATGTTGTCCC+TGG | - | chr7.2:8226471-8226490 | MS.gene050311:intron | 45.0% | |
| AGGAGAGAAAGACAATGGGT+TGG | - | chr7.2:8226383-8226402 | MS.gene050311:intron | 45.0% | |
| GAACATTAGTAGGCTCACTC+AGG | + | chr7.2:8225817-8225836 | None:intergenic | 45.0% | |
| GAATCTCCATGGAGACTTGT+AGG | + | chr7.2:8226573-8226592 | None:intergenic | 45.0% | |
| GTAAGGAACTGCTTCATCAG+AGG | - | chr7.2:8227140-8227159 | MS.gene050311:CDS | 45.0% | |
| GTAGCTGCATTACCCCTATT+AGG | + | chr7.2:8224272-8224291 | None:intergenic | 45.0% | |
| TCAAGACAAGTACCCTCACA+TGG | - | chr7.2:8223957-8223976 | MS.gene050311:intron | 45.0% | |
| TCTCATGGTACCATGCTGTT+TGG | - | chr7.2:8225304-8225323 | MS.gene050311:intron | 45.0% | |
| TCTGTTTCCATGTGAGCAAG+AGG | - | chr7.2:8225456-8225475 | MS.gene050311:intron | 45.0% | |
| TTCAGCTCTCTCAAACTCCA+AGG | + | chr7.2:8226919-8226938 | None:intergenic | 45.0% | |
| TTTCCATGTGAGCAAGAGGA+GGG | - | chr7.2:8225460-8225479 | MS.gene050311:intron | 45.0% | |
| ! | CCTGATAATGACACAAAGCC+AGG | + | chr7.2:8226492-8226511 | None:intergenic | 45.0% |
| ! | GGAGAGAAAGACAATGGGTT+GGG | - | chr7.2:8226384-8226403 | MS.gene050311:intron | 45.0% |
| !! | AGTTTTGTGAGGCAAGTGAC+AGG | + | chr7.2:8226533-8226552 | None:intergenic | 45.0% |
| !! | CACCCTTCACCAGTTTTGTA+AGG | - | chr7.2:8224222-8224241 | MS.gene050311:intron | 45.0% |
| !! | CCTGGCTTTGTGTCATTATC+AGG | - | chr7.2:8226489-8226508 | MS.gene050311:intron | 45.0% |
| !! | ATTTATTTATTTATAGTTAT+TGG | - | chr7.2:8226115-8226134 | MS.gene050311:intron | 5.0% |
| !!! | AATTTTGTTTATATAATTAA+AGG | + | chr7.2:8226082-8226101 | None:intergenic | 5.0% |
| ACGGACAGAGATAGGCATAG+AGG | - | chr7.2:8226426-8226445 | MS.gene050311:intron | 50.0% | |
| AGTTCAATGTCCACGCCTTC+TGG | + | chr7.2:8227194-8227213 | None:intergenic | 50.0% | |
| CTGCTTCATCAGAGGATCAG+TGG | - | chr7.2:8227148-8227167 | MS.gene050311:CDS | 50.0% | |
| GCGTGCATAAGGTAATGCGA+GGG | + | chr7.2:8226979-8226998 | None:intergenic | 50.0% | |
| GCTGTTCCTACAAGTCTCCA+TGG | - | chr7.2:8226564-8226583 | MS.gene050311:intron | 50.0% | |
| GTTTCCATGTGAGCAAGAGG+AGG | - | chr7.2:8225459-8225478 | MS.gene050311:intron | 50.0% | |
| TGCGTGCATAAGGTAATGCG+AGG | + | chr7.2:8226980-8226999 | None:intergenic | 50.0% | |
| TTCCATGTGAGCAAGAGGAG+GGG | - | chr7.2:8225461-8225480 | MS.gene050311:intron | 50.0% | |
| !! | AGACAATGGGTTGGGAGACA+TGG | - | chr7.2:8226392-8226411 | MS.gene050311:intron | 50.0% |
| ATGCCACAAGGAGAGAAGCC+CGG | - | chr7.2:8227222-8227241 | MS.gene050311:intron | 55.0% | |
| CACGACCCTCCGAGTAAACA+AGG | - | chr7.2:8226634-8226653 | MS.gene050311:intron | 55.0% | |
| GAGGTTCGACGGACAGAGAT+AGG | - | chr7.2:8226418-8226437 | MS.gene050311:intron | 55.0% | |
| GGGTTGGGAGACATGGATAG+AGG | - | chr7.2:8226399-8226418 | MS.gene050311:intron | 55.0% | |
| GGTCGTGCAATCCCACATAG+AGG | + | chr7.2:8226621-8226640 | None:intergenic | 55.0% | |
| TACGTGCAATTGCCGCCAGA+AGG | - | chr7.2:8227176-8227195 | MS.gene050311:intron | 55.0% | |
| TCAATGTCCACGCCTTCTGG+CGG | + | chr7.2:8227191-8227210 | None:intergenic | 55.0% | |
| ! | CTGAACCGACGCTTTGAGCT+AGG | + | chr7.2:8224455-8224474 | None:intergenic | 55.0% |
| GACCCCTCCTCTTGCTCACA+TGG | + | chr7.2:8225466-8225485 | None:intergenic | 60.0% | |
| GTGAGCAAGAGGAGGGGTCA+GGG | - | chr7.2:8225467-8225486 | MS.gene050311:intron | 60.0% | |
| TGAGCAAGAGGAGGGGTCAG+GGG | - | chr7.2:8225468-8225487 | MS.gene050311:intron | 60.0% | |
| TGCCACAAGGAGAGAAGCCC+GGG | - | chr7.2:8227223-8227242 | MS.gene050311:intron | 60.0% | |
| TGTGAGCAAGAGGAGGGGTC+AGG | - | chr7.2:8225466-8225485 | MS.gene050311:intron | 60.0% | |
| ACAAGGAGAGAAGCCCGGGG+TGG | - | chr7.2:8227227-8227246 | MS.gene050311:intron | 65.0% | |
| ACCCCGGGCTTCTCTCCTTG+TGG | + | chr7.2:8227228-8227247 | None:intergenic | 65.0% | |
| GCAATTGCCGCCAGAAGGCG+TGG | - | chr7.2:8227181-8227200 | MS.gene050311:intron | 65.0% | |
| GCCACAAGGAGAGAAGCCCG+GGG | - | chr7.2:8227224-8227243 | MS.gene050311:intron | 65.0% | |
| ! | AGAGGAGGGGTCAGGGGTGC+AGG | - | chr7.2:8225474-8225493 | MS.gene050311:intron | 70.0% |
| ! | GAGGAGGGGTCAGGGGTGCA+GGG | - | chr7.2:8225475-8225494 | MS.gene050311:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 8223740 | 8227253 | 8223740 | ID=MS.gene050311 |
| chr7.2 | mRNA | 8223740 | 8227253 | 8223740 | ID=MS.gene050311.t1;Parent=MS.gene050311 |
| chr7.2 | exon | 8227251 | 8227253 | 8227251 | ID=MS.gene050311.t1.exon1;Parent=MS.gene050311.t1 |
| chr7.2 | CDS | 8227251 | 8227253 | 8227251 | ID=cds.MS.gene050311.t1;Parent=MS.gene050311.t1 |
| chr7.2 | exon | 8227015 | 8227173 | 8227015 | ID=MS.gene050311.t1.exon2;Parent=MS.gene050311.t1 |
| chr7.2 | CDS | 8227015 | 8227173 | 8227015 | ID=cds.MS.gene050311.t1;Parent=MS.gene050311.t1 |
| chr7.2 | exon | 8223740 | 8223859 | 8223740 | ID=MS.gene050311.t1.exon3;Parent=MS.gene050311.t1 |
| chr7.2 | CDS | 8223740 | 8223859 | 8223740 | ID=cds.MS.gene050311.t1;Parent=MS.gene050311.t1 |
| Gene Sequence |
| Protein sequence |
