Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071901.t1 | XP_003593234.1 | 99.5 | 212 | 1 | 0 | 1 | 212 | 356 | 567 | 2.80E-113 | 417.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071901.t1 | Q9FMF7 | 83.5 | 212 | 35 | 0 | 1 | 212 | 352 | 563 | 3.3e-99 | 362.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071901.t1 | G7IPL2 | 99.5 | 212 | 1 | 0 | 1 | 212 | 356 | 567 | 2.0e-113 | 417.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene071901 | -0.834203 | 3.43E-56 | -1.69E-46 |
| MS.gene049182 | MS.gene071901 | -0.81683 | 4.52E-52 | -1.69E-46 |
| MS.gene049232 | MS.gene071901 | 0.838044 | 3.63E-57 | -1.69E-46 |
| MS.gene049285 | MS.gene071901 | 0.817841 | 2.68E-52 | -1.69E-46 |
| MS.gene049313 | MS.gene071901 | -0.808447 | 3.08E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene071901 | 0.803614 | 3.21E-49 | -1.69E-46 |
| MS.gene049627 | MS.gene071901 | 0.809018 | 2.33E-50 | -1.69E-46 |
| MS.gene049865 | MS.gene071901 | 0.803984 | 2.68E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene071901 | 0.8286 | 8.22E-55 | -1.69E-46 |
| MS.gene050165 | MS.gene071901 | 0.802958 | 4.38E-49 | -1.69E-46 |
| MS.gene050216 | MS.gene071901 | 0.811283 | 7.57E-51 | -1.69E-46 |
| MS.gene050333 | MS.gene071901 | 0.811683 | 6.19E-51 | -1.69E-46 |
| MS.gene050463 | MS.gene071901 | -0.805841 | 1.10E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene071901 | 0.830142 | 3.47E-55 | -1.69E-46 |
| MS.gene050518 | MS.gene071901 | 0.837113 | 6.29E-57 | -1.69E-46 |
| MS.gene050528 | MS.gene071901 | -0.805889 | 1.07E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene071901 | 0.824767 | 6.75E-54 | -1.69E-46 |
| MS.gene050825 | MS.gene071901 | 0.814784 | 1.29E-51 | -1.69E-46 |
| MS.gene050876 | MS.gene071901 | 0.843087 | 1.74E-58 | -1.69E-46 |
| MS.gene05087 | MS.gene071901 | 0.852965 | 3.27E-61 | -1.69E-46 |
| MS.gene050986 | MS.gene071901 | 0.825224 | 5.27E-54 | -1.69E-46 |
| MS.gene051960 | MS.gene071901 | -0.800045 | 1.73E-48 | -1.69E-46 |
| MS.gene052004 | MS.gene071901 | 0.825253 | 5.18E-54 | -1.69E-46 |
| MS.gene052486 | MS.gene071901 | 0.804528 | 2.07E-49 | -1.69E-46 |
| MS.gene052966 | MS.gene071901 | 0.80023 | 1.59E-48 | -1.69E-46 |
| MS.gene053633 | MS.gene071901 | 0.808143 | 3.58E-50 | -1.69E-46 |
| MS.gene054638 | MS.gene071901 | 0.807894 | 4.04E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene071901 | 0.843932 | 1.03E-58 | -1.69E-46 |
| MS.gene055333 | MS.gene071901 | -0.802721 | 4.90E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene071901 | 0.812416 | 4.29E-51 | -1.69E-46 |
| MS.gene055634 | MS.gene071901 | 0.891612 | 3.39E-74 | -1.69E-46 |
| MS.gene055638 | MS.gene071901 | 0.820394 | 7.02E-53 | -1.69E-46 |
| MS.gene055776 | MS.gene071901 | 0.830358 | 3.07E-55 | -1.69E-46 |
| MS.gene055849 | MS.gene071901 | 0.852412 | 4.70E-61 | -1.69E-46 |
| MS.gene056046 | MS.gene071901 | 0.805458 | 1.32E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene071901 | 0.814064 | 1.86E-51 | -1.69E-46 |
| MS.gene056510 | MS.gene071901 | 0.849185 | 3.80E-60 | -1.69E-46 |
| MS.gene056657 | MS.gene071901 | 0.80481 | 1.81E-49 | -1.69E-46 |
| MS.gene056910 | MS.gene071901 | 0.807308 | 5.39E-50 | -1.69E-46 |
| MS.gene057148 | MS.gene071901 | 0.851997 | 6.16E-61 | -1.69E-46 |
| MS.gene057684 | MS.gene071901 | 0.838919 | 2.16E-57 | -1.69E-46 |
| MS.gene057687 | MS.gene071901 | 0.83613 | 1.12E-56 | -1.69E-46 |
| MS.gene057872 | MS.gene071901 | 0.843568 | 1.29E-58 | -1.69E-46 |
| MS.gene058719 | MS.gene071901 | 0.810626 | 1.05E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene071901 | 0.833788 | 4.36E-56 | -1.69E-46 |
| MS.gene058774 | MS.gene071901 | 0.856402 | 3.30E-62 | -1.69E-46 |
| MS.gene058775 | MS.gene071901 | 0.840184 | 1.01E-57 | -1.69E-46 |
| MS.gene058777 | MS.gene071901 | 0.812574 | 3.96E-51 | -1.69E-46 |
| MS.gene05884 | MS.gene071901 | -0.851494 | 8.56E-61 | -1.69E-46 |
| MS.gene059022 | MS.gene071901 | 0.83786 | 4.05E-57 | -1.69E-46 |
| MS.gene059026 | MS.gene071901 | 0.808454 | 3.07E-50 | -1.69E-46 |
| MS.gene059034 | MS.gene071901 | 0.822536 | 2.25E-53 | -1.69E-46 |
| MS.gene059514 | MS.gene071901 | -0.809228 | 2.10E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene071901 | 0.802837 | 4.64E-49 | -1.69E-46 |
| MS.gene059837 | MS.gene071901 | 0.812058 | 5.13E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene071901 | 0.820118 | 8.12E-53 | -1.69E-46 |
| MS.gene06012 | MS.gene071901 | -0.802011 | 6.87E-49 | -1.69E-46 |
| MS.gene060339 | MS.gene071901 | 0.802119 | 6.53E-49 | -1.69E-46 |
| MS.gene060595 | MS.gene071901 | -0.806369 | 8.51E-50 | -1.69E-46 |
| MS.gene060703 | MS.gene071901 | 0.854557 | 1.14E-61 | -1.69E-46 |
| MS.gene06077 | MS.gene071901 | 0.803351 | 3.63E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene071901 | 0.806079 | 9.79E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071901.t1 | MTR_2g009220 | 99.528 | 212 | 1 | 0 | 1 | 212 | 356 | 567 | 2.34e-150 | 429 |
| MS.gene071901.t1 | MTR_4g065007 | 46.698 | 212 | 113 | 0 | 1 | 212 | 346 | 557 | 1.16e-60 | 199 |
| MS.gene071901.t1 | MTR_4g081600 | 37.611 | 226 | 119 | 3 | 1 | 211 | 421 | 639 | 1.14e-35 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071901.t1 | AT5G64290 | 83.491 | 212 | 35 | 0 | 1 | 212 | 352 | 563 | 2.20e-127 | 371 |
| MS.gene071901.t1 | AT5G64280 | 68.868 | 212 | 66 | 0 | 1 | 212 | 338 | 549 | 1.14e-107 | 320 |
| MS.gene071901.t1 | AT5G12860 | 47.642 | 212 | 111 | 0 | 1 | 212 | 346 | 557 | 1.10e-63 | 206 |
| MS.gene071901.t1 | AT5G12860 | 47.867 | 211 | 110 | 0 | 1 | 211 | 346 | 556 | 1.43e-63 | 206 |
Find 61 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGTCTCTTTGTGGATCTT+TGG | 0.181386 | 2.4:+73889073 | MS.gene071901:CDS |
| CTTGAGCTGGCCGGCTTCAT+TGG | 0.228307 | 2.4:+73890426 | MS.gene071901:CDS |
| GGCTTCATTGGCTGTTCTTC+AGG | 0.266545 | 2.4:+73890438 | MS.gene071901:CDS |
| CAGTCTCTTTGTGGATCTTT+GGG | 0.272268 | 2.4:+73889074 | MS.gene071901:CDS |
| GGGGAGGTGTTGGCTCTATC+TGG | 0.287380 | 2.4:+73891153 | MS.gene071901:CDS |
| TTATCAATACTCCTCGTCTT+AGG | 0.295196 | 2.4:+73890250 | MS.gene071901:CDS |
| TGCTTCTTGCAGTCTCTTTG+TGG | 0.314222 | 2.4:+73889065 | MS.gene071901:CDS |
| ACTCTCGCAGCGCTTGCTTT+AGG | 0.336598 | 2.4:+73890565 | MS.gene071901:CDS |
| GCCCAGTCTGGCTTGCAAAA+AGG | 0.352898 | 2.4:-73890483 | None:intergenic |
| CATTTATTAATGCTGTCATC+TGG | 0.360369 | 2.4:+73891132 | MS.gene071901:CDS |
| TCGTCTTAGGAGTCCTTGAC+TGG | 0.360749 | 2.4:+73890263 | MS.gene071901:CDS |
| CAATCCCAAGGTTTGTCAAC+TGG | 0.407857 | 2.4:-73890357 | None:intergenic |
| GTTTGCCATTCTAGTGGGTA+TGG | 0.411337 | 2.4:+73890330 | MS.gene071901:CDS |
| CAAGCCAGACTGGGCATGTA+GGG | 0.411568 | 2.4:+73890491 | MS.gene071901:CDS |
| CTTCCTGATATATTCAAAAC+GGG | 0.423650 | 2.4:+73891098 | MS.gene071901:CDS |
| CTTGCCATGCATAGGGCAGC+TGG | 0.433935 | 2.4:+73890532 | MS.gene071901:CDS |
| GGTCAAGCTGCTGTATACTA+TGG | 0.440740 | 2.4:+73890631 | MS.gene071901:CDS |
| TTCGATCGTTCTCCTTGAGC+TGG | 0.440822 | 2.4:+73890413 | MS.gene071901:CDS |
| GCAAGCGCTGCGAGAGTACC+AGG | 0.448469 | 2.4:-73890559 | None:intergenic |
| ATTTATTAATGCTGTCATCT+GGG | 0.450148 | 2.4:+73891133 | MS.gene071901:CDS |
| CCCTGTCACACAAAATGAAT+GGG | 0.451548 | 2.4:+73889027 | MS.gene071901:CDS |
| CCTTCCTGATATATTCAAAA+CGG | 0.459591 | 2.4:+73891097 | MS.gene071901:CDS |
| CACACAAAATGAATGGGTTA+TGG | 0.470045 | 2.4:+73889033 | MS.gene071901:CDS |
| CATAGGGCAGCTGGTGTCCC+TGG | 0.470166 | 2.4:+73890541 | MS.gene071901:CDS |
| TGGTCTTGCAGAGAGACTCT+TGG | 0.472309 | 2.4:+73890196 | MS.gene071901:intron |
| GCTTGGTTTGCCATTCTAGT+GGG | 0.480852 | 2.4:+73890325 | MS.gene071901:CDS |
| GCTGTCATCTGGGGAGGTGT+TGG | 0.483473 | 2.4:+73891143 | MS.gene071901:CDS |
| AAGCCCCTACATGCCCAGTC+TGG | 0.488462 | 2.4:-73890495 | None:intergenic |
| TGCATTTCTTGCCATGCATA+GGG | 0.488787 | 2.4:+73890525 | MS.gene071901:CDS |
| GGCTTGGTTTGCCATTCTAG+TGG | 0.491057 | 2.4:+73890324 | MS.gene071901:CDS |
| GCAAGCCAGTTGACAAACCT+TGG | 0.492138 | 2.4:+73890352 | MS.gene071901:CDS |
| GCCCTGTCACACAAAATGAA+TGG | 0.496344 | 2.4:+73889026 | MS.gene071901:CDS |
| TGTAATTGCACCGAAAAGAT+TGG | 0.500834 | 2.4:-73890596 | None:intergenic |
| TGAAGAACAGCCAATGAAGC+CGG | 0.505209 | 2.4:-73890436 | None:intergenic |
| CGGCGTGGGATACCTTGGCT+TGG | 0.507831 | 2.4:+73890308 | MS.gene071901:CDS |
| CTGCATTTCTTGCCATGCAT+AGG | 0.509976 | 2.4:+73890524 | MS.gene071901:CDS |
| CAATGAAGCCGGCCAGCTCA+AGG | 0.512178 | 2.4:-73890425 | None:intergenic |
| CAAGCCAGTTGACAAACCTT+GGG | 0.513135 | 2.4:+73890353 | MS.gene071901:CDS |
| ATCGTTCTCCTTGAGCTGGC+CGG | 0.521340 | 2.4:+73890417 | MS.gene071901:CDS |
| AGTGCTGTAGCTGCAATGCT+TGG | 0.530608 | 2.4:+73890226 | MS.gene071901:CDS |
| GCAAGCCAGACTGGGCATGT+AGG | 0.538403 | 2.4:+73890490 | MS.gene071901:CDS |
| AAAATCGGCGTGGGATACCT+TGG | 0.547524 | 2.4:+73890303 | MS.gene071901:CDS |
| GACACCAGCTGCCCTATGCA+TGG | 0.551779 | 2.4:-73890536 | None:intergenic |
| GAGGTGTTGGCTCTATCTGG+TGG | 0.556404 | 2.4:+73891156 | MS.gene071901:CDS |
| CAAACCTTGGGATTGTGAGC+TGG | 0.559194 | 2.4:+73890365 | MS.gene071901:CDS |
| GGAGAACGATCGAAGGCTGT+TGG | 0.573491 | 2.4:-73890404 | None:intergenic |
| GCTTGCCATACCCACTAGAA+TGG | 0.574637 | 2.4:-73890335 | None:intergenic |
| ATTAATGCTGTCATCTGGGG+AGG | 0.577151 | 2.4:+73891137 | MS.gene071901:CDS |
| TTTATTAATGCTGTCATCTG+GGG | 0.579403 | 2.4:+73891134 | MS.gene071901:CDS |
| CGTCTTAGGAGTCCTTGACT+GGG | 0.590653 | 2.4:+73890264 | MS.gene071901:CDS |
| TCAAGCAGTCATCCCAGTCA+AGG | 0.602001 | 2.4:-73890276 | None:intergenic |
| CAAGCTGCTGTATACTATGG+AGG | 0.606951 | 2.4:+73890634 | MS.gene071901:CDS |
| GAGCTGGATGTCTGATTGTG+TGG | 0.615254 | 2.4:+73890381 | MS.gene071901:CDS |
| AGCTCAAGGAGAACGATCGA+AGG | 0.615633 | 2.4:-73890411 | None:intergenic |
| TAGAATGGCAAACCAAGCCA+AGG | 0.647704 | 2.4:-73890320 | None:intergenic |
| AAGCCAGACTGGGCATGTAG+GGG | 0.658449 | 2.4:+73890492 | MS.gene071901:CDS |
| ACATCCAGCTCACAATCCCA+AGG | 0.664594 | 2.4:-73890369 | None:intergenic |
| GCAATTACACACTATAGCAG+TGG | 0.666445 | 2.4:+73890610 | MS.gene071901:CDS |
| CAAGCGCTGCGAGAGTACCA+GGG | 0.706701 | 2.4:-73890558 | None:intergenic |
| AGTCAAGGACTCCTAAGACG+AGG | 0.716369 | 2.4:-73890261 | None:intergenic |
| GTAGTGGATGAAGAAATAAG+CGG | 0.766547 | 2.4:-73890461 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATATATTAGTATTAATA+AGG | - | chr2.4:73889745-73889764 | None:intergenic | 10.0% |
| !! | AGATATATTAGTATTAATAA+GGG | - | chr2.4:73889744-73889763 | None:intergenic | 10.0% |
| !! | TTATTAATACTAATATATCT+TGG | + | chr2.4:73889744-73889763 | MS.gene071901:intron | 10.0% |
| !!! | AAATCTTTTTATTCTTATAA+AGG | + | chr2.4:73890870-73890889 | MS.gene071901:intron | 10.0% |
| !!! | AAGAATAAAAAGATTTATTT+TGG | - | chr2.4:73890866-73890885 | None:intergenic | 10.0% |
| !! | GATATATTAGTATTAATAAG+GGG | - | chr2.4:73889743-73889762 | None:intergenic | 15.0% |
| !!! | ATAAAAAGATTTATTTTGGA+AGG | - | chr2.4:73890862-73890881 | None:intergenic | 15.0% |
| !!! | ATTATTTTTGATTGAGTAAA+TGG | + | chr2.4:73889130-73889149 | MS.gene071901:intron | 15.0% |
| !! | AAAGAAAAACAGAAATCATA+TGG | - | chr2.4:73890685-73890704 | None:intergenic | 20.0% |
| !! | AATACTAATATATCTTGGAA+CGG | + | chr2.4:73889749-73889768 | MS.gene071901:intron | 20.0% |
| !! | ATACATGTAATGTAAATGTA+TGG | - | chr2.4:73890759-73890778 | None:intergenic | 20.0% |
| !! | TAGCTTATGAAAAAAGTTAT+TGG | + | chr2.4:73889544-73889563 | MS.gene071901:intron | 20.0% |
| !! | TCAAATTCACAAAGTATAAA+GGG | - | chr2.4:73890964-73890983 | None:intergenic | 20.0% |
| !!! | TTAGACATTTTAATATACTC+AGG | + | chr2.4:73889775-73889794 | MS.gene071901:intron | 20.0% |
| ! | AGAGACAAAAAATTCTTCAA+GGG | - | chr2.4:73889668-73889687 | None:intergenic | 25.0% |
| ! | ATTAAACTGTTTATCCAAGT+TGG | + | chr2.4:73889941-73889960 | MS.gene071901:intron | 25.0% |
| ! | ATTTATTAATGCTGTCATCT+GGG | + | chr2.4:73891133-73891152 | MS.gene071901:CDS | 25.0% |
| ! | CTGAAAATATTGAACTTTGA+AGG | + | chr2.4:73889166-73889185 | MS.gene071901:intron | 25.0% |
| ! | CTTAATATACGTGGAAAAAA+AGG | + | chr2.4:73889854-73889873 | MS.gene071901:intron | 25.0% |
| ! | CTTCATTTCTGTTTGTTTAA+TGG | + | chr2.4:73890797-73890816 | MS.gene071901:intron | 25.0% |
| ! | GTCAAATTCACAAAGTATAA+AGG | - | chr2.4:73890965-73890984 | None:intergenic | 25.0% |
| ! | GTTAATATGCATATGAGAAA+AGG | - | chr2.4:73889256-73889275 | None:intergenic | 25.0% |
| ! | GTTGAATTCAATACTATCAT+TGG | + | chr2.4:73890165-73890184 | MS.gene071901:intron | 25.0% |
| ! | TACTATCATTGGTATTTCTT+TGG | + | chr2.4:73890176-73890195 | MS.gene071901:intron | 25.0% |
| ! | TAGAGACAAAAAATTCTTCA+AGG | - | chr2.4:73889669-73889688 | None:intergenic | 25.0% |
| ! | TCCACGTATATTAAGAAAAA+TGG | - | chr2.4:73889849-73889868 | None:intergenic | 25.0% |
| ! | TCTCATATGCATATTAACTT+TGG | + | chr2.4:73889258-73889277 | MS.gene071901:intron | 25.0% |
| ! | TGCATATTAACTTTGGATAT+AGG | + | chr2.4:73889265-73889284 | MS.gene071901:intron | 25.0% |
| ! | TGTTTGTTTAATGGTATAAC+TGG | + | chr2.4:73890806-73890825 | MS.gene071901:intron | 25.0% |
| !! | GGTTATAATACCAATCTTTT+CGG | + | chr2.4:73890586-73890605 | MS.gene071901:CDS | 25.0% |
| !!! | ACCATTTTTCTTAATATACG+TGG | + | chr2.4:73889845-73889864 | MS.gene071901:intron | 25.0% |
| !!! | ATTCAAAACGGGTTTTATTA+TGG | + | chr2.4:73891109-73891128 | MS.gene071901:CDS | 25.0% |
| AAAAACAGAAATCATATGGC+GGG | - | chr2.4:73890681-73890700 | None:intergenic | 30.0% | |
| CATTTATTAATGCTGTCATC+TGG | + | chr2.4:73891132-73891151 | MS.gene071901:CDS | 30.0% | |
| CCTTCCTGATATATTCAAAA+CGG | + | chr2.4:73891097-73891116 | MS.gene071901:CDS | 30.0% | |
| CTTCCTGATATATTCAAAAC+GGG | + | chr2.4:73891098-73891117 | MS.gene071901:CDS | 30.0% | |
| GAAAAACAGAAATCATATGG+CGG | - | chr2.4:73890682-73890701 | None:intergenic | 30.0% | |
| GAACTCTTACACATAAAAGA+AGG | - | chr2.4:73890095-73890114 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr2.4:73889417-73889436 | None:intergenic | 30.0% | |
| TGACTGCTTGAATGAAAAAT+CGG | + | chr2.4:73890288-73890307 | MS.gene071901:CDS | 30.0% | |
| TTGTTTAATGGTATAACTGG+TGG | + | chr2.4:73890809-73890828 | MS.gene071901:intron | 30.0% | |
| TTTATTAATGCTGTCATCTG+GGG | + | chr2.4:73891134-73891153 | MS.gene071901:CDS | 30.0% | |
| ! | CCAAAAGGCTATATTTGTTA+AGG | + | chr2.4:73890916-73890935 | MS.gene071901:intron | 30.0% |
| ! | CCTTAACAAATATAGCCTTT+TGG | - | chr2.4:73890919-73890938 | None:intergenic | 30.0% |
| ! | TCTATCTGGTGGAAATTTTT+AGG | + | chr2.4:73891167-73891186 | MS.gene071901:CDS | 30.0% |
| !! | AAACCCGTTTTGAATATATC+AGG | - | chr2.4:73891104-73891123 | None:intergenic | 30.0% |
| !!! | CAATTCTTGTTTTTAACAGC+TGG | + | chr2.4:73891065-73891084 | MS.gene071901:intron | 30.0% |
| AACAAACAGAAATGAAGCGT+AGG | - | chr2.4:73890794-73890813 | None:intergenic | 35.0% | |
| AATAAGCTGAAAACTCCCTA+TGG | - | chr2.4:73889502-73889521 | None:intergenic | 35.0% | |
| ACAAACAGAAATGAAGCGTA+GGG | - | chr2.4:73890793-73890812 | None:intergenic | 35.0% | |
| ACATCTTATGACATGTCCAT+AGG | + | chr2.4:73889483-73889502 | MS.gene071901:intron | 35.0% | |
| ATGCACCTAGTAAATTGCAT+AGG | - | chr2.4:73889702-73889721 | None:intergenic | 35.0% | |
| CATCTTATGACATGTCCATA+GGG | + | chr2.4:73889484-73889503 | MS.gene071901:intron | 35.0% | |
| GAGCTAATTAGTTAATTCGC+AGG | - | chr2.4:73890708-73890727 | None:intergenic | 35.0% | |
| TACGTGGAAAAAAAGGTAAG+AGG | + | chr2.4:73889861-73889880 | MS.gene071901:intron | 35.0% | |
| TGACATAAGCACTTGTGTTT+GGG | + | chr2.4:73889447-73889466 | MS.gene071901:intron | 35.0% | |
| TGATTGAGTAAATGGTCTCA+TGG | + | chr2.4:73889138-73889157 | MS.gene071901:intron | 35.0% | |
| TGCACCTAGTAAATTGCATA+GGG | - | chr2.4:73889701-73889720 | None:intergenic | 35.0% | |
| TGCTTAGAAAAAGAGATGGA+GGG | + | chr2.4:73889884-73889903 | MS.gene071901:intron | 35.0% | |
| TGTAATTGCACCGAAAAGAT+TGG | - | chr2.4:73890599-73890618 | None:intergenic | 35.0% | |
| TTATCAATACTCCTCGTCTT+AGG | + | chr2.4:73890250-73890269 | MS.gene071901:CDS | 35.0% | |
| ! | CTGTTTATCCAAGTTGGAAA+AGG | + | chr2.4:73889947-73889966 | MS.gene071901:intron | 35.0% |
| !! | CACACAAAATGAATGGGTTA+TGG | + | chr2.4:73889033-73889052 | MS.gene071901:CDS | 35.0% |
| !! | CCGTTTTGAATATATCAGGA+AGG | - | chr2.4:73891100-73891119 | None:intergenic | 35.0% |
| !! | GTAGTGGATGAAGAAATAAG+CGG | - | chr2.4:73890464-73890483 | None:intergenic | 35.0% |
| !!! | TTATCATTGTTTTAGCCTCC+AGG | + | chr2.4:73889222-73889241 | MS.gene071901:intron | 35.0% |
| AGCTGCAATTAGTGACCAAA+AGG | + | chr2.4:73890901-73890920 | MS.gene071901:intron | 40.0% | |
| ATAGTTAGGACAGAGGGAAT+AGG | - | chr2.4:73889640-73889659 | None:intergenic | 40.0% | |
| CACCTAGTAAATTGCATAGG+GGG | - | chr2.4:73889699-73889718 | None:intergenic | 40.0% | |
| CAGTCTCTTTGTGGATCTTT+GGG | + | chr2.4:73889074-73889093 | MS.gene071901:CDS | 40.0% | |
| CCCTGTCACACAAAATGAAT+GGG | + | chr2.4:73889027-73889046 | MS.gene071901:CDS | 40.0% | |
| CTGACATAAGCACTTGTGTT+TGG | + | chr2.4:73889446-73889465 | MS.gene071901:intron | 40.0% | |
| CTTCAAGGGAGCTTATAGTT+AGG | - | chr2.4:73889654-73889673 | None:intergenic | 40.0% | |
| CTTGAATGAAAAATCGGCGT+GGG | + | chr2.4:73890294-73890313 | MS.gene071901:CDS | 40.0% | |
| GACTTGCACAGGTATAGTTT+GGG | - | chr2.4:73890066-73890085 | None:intergenic | 40.0% | |
| GAGCTTATAGTTAGGACAGA+GGG | - | chr2.4:73889646-73889665 | None:intergenic | 40.0% | |
| GCAATTACACACTATAGCAG+TGG | + | chr2.4:73890610-73890629 | MS.gene071901:CDS | 40.0% | |
| GCACCTAGTAAATTGCATAG+GGG | - | chr2.4:73889700-73889719 | None:intergenic | 40.0% | |
| GTGCTTAGAAAAAGAGATGG+AGG | + | chr2.4:73889883-73889902 | MS.gene071901:intron | 40.0% | |
| TGAGAAAAGGAGCTTAAACC+TGG | - | chr2.4:73889243-73889262 | None:intergenic | 40.0% | |
| TGCATTTCTTGCCATGCATA+GGG | + | chr2.4:73890525-73890544 | MS.gene071901:CDS | 40.0% | |
| ! | ACCCATTCATTTTGTGTGAC+AGG | - | chr2.4:73889031-73889050 | None:intergenic | 40.0% |
| ! | ATTTCCATAAGCTGACTCAC+TGG | + | chr2.4:73889519-73889538 | MS.gene071901:intron | 40.0% |
| ! | CCCATTCATTTTGTGTGACA+GGG | - | chr2.4:73889030-73889049 | None:intergenic | 40.0% |
| ! | GAAGGTATAATGACTTGCAC+AGG | - | chr2.4:73890077-73890096 | None:intergenic | 40.0% |
| ! | GAGGTGCTTAGAAAAAGAGA+TGG | + | chr2.4:73889880-73889899 | MS.gene071901:intron | 40.0% |
| ! | TGACTTGCACAGGTATAGTT+TGG | - | chr2.4:73890067-73890086 | None:intergenic | 40.0% |
| ! | TTTCCATAAGCTGACTCACT+GGG | + | chr2.4:73889520-73889539 | MS.gene071901:intron | 40.0% |
| AATCCAAACAGGCCCTAAGT+GGG | - | chr2.4:73889406-73889425 | None:intergenic | 45.0% | |
| ACAGAAATGAAGCGTAGGGA+AGG | - | chr2.4:73890789-73890808 | None:intergenic | 45.0% | |
| AGCCCCCTATGCAATTTACT+AGG | + | chr2.4:73889694-73889713 | MS.gene071901:intron | 45.0% | |
| ATTAATGCTGTCATCTGGGG+AGG | + | chr2.4:73891137-73891156 | MS.gene071901:CDS | 45.0% | |
| CAAGCCAGTTGACAAACCTT+GGG | + | chr2.4:73890353-73890372 | MS.gene071901:CDS | 45.0% | |
| CAAGCTGCTGTATACTATGG+AGG | + | chr2.4:73890634-73890653 | MS.gene071901:CDS | 45.0% | |
| CAATCCCAAGGTTTGTCAAC+TGG | - | chr2.4:73890360-73890379 | None:intergenic | 45.0% | |
| CTGCATTTCTTGCCATGCAT+AGG | + | chr2.4:73890524-73890543 | MS.gene071901:CDS | 45.0% | |
| CTTGTGTTTGGGAGAGCTTA+TGG | + | chr2.4:73889458-73889477 | MS.gene071901:intron | 45.0% | |
| GAAAAGGAGCTTAAACCTGG+AGG | - | chr2.4:73889240-73889259 | None:intergenic | 45.0% | |
| GCAGTCTCTTTGTGGATCTT+TGG | + | chr2.4:73889073-73889092 | MS.gene071901:CDS | 45.0% | |
| GCCCTGTCACACAAAATGAA+TGG | + | chr2.4:73889026-73889045 | MS.gene071901:CDS | 45.0% | |
| GCTTGAATGAAAAATCGGCG+TGG | + | chr2.4:73890293-73890312 | MS.gene071901:CDS | 45.0% | |
| GGAGCTTATAGTTAGGACAG+AGG | - | chr2.4:73889647-73889666 | None:intergenic | 45.0% | |
| GGTCAAGCTGCTGTATACTA+TGG | + | chr2.4:73890631-73890650 | MS.gene071901:CDS | 45.0% | |
| TAGAATGGCAAACCAAGCCA+AGG | - | chr2.4:73890323-73890342 | None:intergenic | 45.0% | |
| TATCCCAGTGAGTCAGCTTA+TGG | - | chr2.4:73889526-73889545 | None:intergenic | 45.0% | |
| TGAAGAACAGCCAATGAAGC+CGG | - | chr2.4:73890439-73890458 | None:intergenic | 45.0% | |
| TGCTTCTTGCAGTCTCTTTG+TGG | + | chr2.4:73889065-73889084 | MS.gene071901:CDS | 45.0% | |
| ! | ACCTTTTTGCAAGCCAGACT+GGG | + | chr2.4:73890482-73890501 | MS.gene071901:CDS | 45.0% |
| ! | AGTCGATGCCTTTTCCAACT+TGG | - | chr2.4:73889958-73889977 | None:intergenic | 45.0% |
| ! | GTTTGCCATTCTAGTGGGTA+TGG | + | chr2.4:73890330-73890349 | MS.gene071901:CDS | 45.0% |
| ! | TACCTTTTTGCAAGCCAGAC+TGG | + | chr2.4:73890481-73890500 | MS.gene071901:CDS | 45.0% |
| ! | TCTGGCTTGCAAAAAGGTAG+TGG | - | chr2.4:73890480-73890499 | None:intergenic | 45.0% |
| !! | GCTTGGTTTGCCATTCTAGT+GGG | + | chr2.4:73890325-73890344 | MS.gene071901:CDS | 45.0% |
| !! | AAAATTCTAATAAAATATTA+TGG | + | chr2.4:73889356-73889375 | MS.gene071901:intron | 5.0% |
| AAAATCGGCGTGGGATACCT+TGG | + | chr2.4:73890303-73890322 | MS.gene071901:CDS | 50.0% | |
| ACATCCAGCTCACAATCCCA+AGG | - | chr2.4:73890372-73890391 | None:intergenic | 50.0% | |
| AGCTCAAGGAGAACGATCGA+AGG | - | chr2.4:73890414-73890433 | None:intergenic | 50.0% | |
| AGTCAAGGACTCCTAAGACG+AGG | - | chr2.4:73890264-73890283 | None:intergenic | 50.0% | |
| AGTGCTGTAGCTGCAATGCT+TGG | + | chr2.4:73890226-73890245 | MS.gene071901:CDS | 50.0% | |
| ATCCAAACAGGCCCTAAGTG+GGG | - | chr2.4:73889405-73889424 | None:intergenic | 50.0% | |
| CAAACCTTGGGATTGTGAGC+TGG | + | chr2.4:73890365-73890384 | MS.gene071901:CDS | 50.0% | |
| CAATCCAAACAGGCCCTAAG+TGG | - | chr2.4:73889407-73889426 | None:intergenic | 50.0% | |
| CGTCTTAGGAGTCCTTGACT+GGG | + | chr2.4:73890264-73890283 | MS.gene071901:CDS | 50.0% | |
| GAGCTGGATGTCTGATTGTG+TGG | + | chr2.4:73890381-73890400 | MS.gene071901:CDS | 50.0% | |
| GCAAGCCAGTTGACAAACCT+TGG | + | chr2.4:73890352-73890371 | MS.gene071901:CDS | 50.0% | |
| GCTTGCCATACCCACTAGAA+TGG | - | chr2.4:73890338-73890357 | None:intergenic | 50.0% | |
| TCAAGCAGTCATCCCAGTCA+AGG | - | chr2.4:73890279-73890298 | None:intergenic | 50.0% | |
| TCGTCTTAGGAGTCCTTGAC+TGG | + | chr2.4:73890263-73890282 | MS.gene071901:CDS | 50.0% | |
| TTCGATCGTTCTCCTTGAGC+TGG | + | chr2.4:73890413-73890432 | MS.gene071901:CDS | 50.0% | |
| ! | GGCTTCATTGGCTGTTCTTC+AGG | + | chr2.4:73890438-73890457 | MS.gene071901:CDS | 50.0% |
| ! | TGGCGGGCGTGTTATAGATA+GGG | - | chr2.4:73890665-73890684 | None:intergenic | 50.0% |
| ! | TGGTCTTGCAGAGAGACTCT+TGG | + | chr2.4:73890196-73890215 | MS.gene071901:intron | 50.0% |
| !! | ATGGCGGGCGTGTTATAGAT+AGG | - | chr2.4:73890666-73890685 | None:intergenic | 50.0% |
| !! | GGCTTGGTTTGCCATTCTAG+TGG | + | chr2.4:73890324-73890343 | MS.gene071901:CDS | 50.0% |
| AAACAGGCCCTAAGTGGGGT+TGG | - | chr2.4:73889401-73889420 | None:intergenic | 55.0% | |
| AACCCCACTTAGGGCCTGTT+TGG | + | chr2.4:73889400-73889419 | MS.gene071901:intron | 55.0% | |
| AAGCCAGACTGGGCATGTAG+GGG | + | chr2.4:73890492-73890511 | MS.gene071901:CDS | 55.0% | |
| ACTCTCGCAGCGCTTGCTTT+AGG | + | chr2.4:73890565-73890584 | MS.gene071901:CDS | 55.0% | |
| ATCGTTCTCCTTGAGCTGGC+CGG | + | chr2.4:73890417-73890436 | MS.gene071901:CDS | 55.0% | |
| CAAGCCAGACTGGGCATGTA+GGG | + | chr2.4:73890491-73890510 | MS.gene071901:CDS | 55.0% | |
| CACGTAGCCAACCCCACTTA+GGG | + | chr2.4:73889391-73889410 | MS.gene071901:intron | 55.0% | |
| GGAGAACGATCGAAGGCTGT+TGG | - | chr2.4:73890407-73890426 | None:intergenic | 55.0% | |
| ! | GCCCAGTCTGGCTTGCAAAA+AGG | - | chr2.4:73890486-73890505 | None:intergenic | 55.0% |
| !! | GAGGTGTTGGCTCTATCTGG+TGG | + | chr2.4:73891156-73891175 | MS.gene071901:CDS | 55.0% |
| AAGCCCCTACATGCCCAGTC+TGG | - | chr2.4:73890498-73890517 | None:intergenic | 60.0% | |
| CAATGAAGCCGGCCAGCTCA+AGG | - | chr2.4:73890428-73890447 | None:intergenic | 60.0% | |
| CCACGTAGCCAACCCCACTT+AGG | + | chr2.4:73889390-73889409 | MS.gene071901:intron | 60.0% | |
| CTTGCCATGCATAGGGCAGC+TGG | + | chr2.4:73890532-73890551 | MS.gene071901:CDS | 60.0% | |
| GACACCAGCTGCCCTATGCA+TGG | - | chr2.4:73890539-73890558 | None:intergenic | 60.0% | |
| GCAAGCCAGACTGGGCATGT+AGG | + | chr2.4:73890490-73890509 | MS.gene071901:CDS | 60.0% | |
| ! | CTTGAGCTGGCCGGCTTCAT+TGG | + | chr2.4:73890426-73890445 | MS.gene071901:CDS | 60.0% |
| ! | GCTGTCATCTGGGGAGGTGT+TGG | + | chr2.4:73891143-73891162 | MS.gene071901:CDS | 60.0% |
| !! | CAAGCGCTGCGAGAGTACCA+GGG | - | chr2.4:73890561-73890580 | None:intergenic | 60.0% |
| !! | CCTAAGTGGGGTTGGCTACG+TGG | - | chr2.4:73889393-73889412 | None:intergenic | 60.0% |
| !! | GGGGAGGTGTTGGCTCTATC+TGG | + | chr2.4:73891153-73891172 | MS.gene071901:CDS | 60.0% |
| CATAGGGCAGCTGGTGTCCC+TGG | + | chr2.4:73890541-73890560 | MS.gene071901:CDS | 65.0% | |
| CGGCGTGGGATACCTTGGCT+TGG | + | chr2.4:73890308-73890327 | MS.gene071901:CDS | 65.0% | |
| !! | GCAAGCGCTGCGAGAGTACC+AGG | - | chr2.4:73890562-73890581 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 73889022 | 73891199 | 73889022 | ID=MS.gene071901 |
| chr2.4 | mRNA | 73889022 | 73891199 | 73889022 | ID=MS.gene071901.t1;Parent=MS.gene071901 |
| chr2.4 | exon | 73889022 | 73889095 | 73889022 | ID=MS.gene071901.t1.exon1;Parent=MS.gene071901.t1 |
| chr2.4 | CDS | 73889022 | 73889095 | 73889022 | ID=cds.MS.gene071901.t1;Parent=MS.gene071901.t1 |
| chr2.4 | exon | 73890207 | 73890655 | 73890207 | ID=MS.gene071901.t1.exon2;Parent=MS.gene071901.t1 |
| chr2.4 | CDS | 73890207 | 73890655 | 73890207 | ID=cds.MS.gene071901.t1;Parent=MS.gene071901.t1 |
| chr2.4 | exon | 73891084 | 73891199 | 73891084 | ID=MS.gene071901.t1.exon3;Parent=MS.gene071901.t1 |
| chr2.4 | CDS | 73891084 | 73891199 | 73891084 | ID=cds.MS.gene071901.t1;Parent=MS.gene071901.t1 |
| Gene Sequence |
| Protein sequence |
