Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72286.t1 | XP_003608809.2 | 96.9 | 225 | 7 | 0 | 1 | 225 | 45 | 269 | 1.40E-118 | 435.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72286.t1 | G7JLB7 | 96.9 | 225 | 7 | 0 | 1 | 225 | 1 | 225 | 9.8e-119 | 435.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene72286 | -0.823377 | 1.43E-53 | -1.69E-46 |
| MS.gene049281 | MS.gene72286 | 0.839366 | 1.65E-57 | -1.69E-46 |
| MS.gene049865 | MS.gene72286 | -0.801144 | 1.03E-48 | -1.69E-46 |
| MS.gene050170 | MS.gene72286 | -0.822143 | 2.77E-53 | -1.69E-46 |
| MS.gene050363 | MS.gene72286 | 0.815333 | 9.76E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene72286 | 0.829727 | 4.38E-55 | -1.69E-46 |
| MS.gene050463 | MS.gene72286 | 0.820248 | 7.58E-53 | -1.69E-46 |
| MS.gene050496 | MS.gene72286 | -0.809076 | 2.26E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene72286 | -0.811425 | 7.05E-51 | -1.69E-46 |
| MS.gene050528 | MS.gene72286 | 0.815193 | 1.05E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene72286 | -0.828659 | 7.95E-55 | -1.69E-46 |
| MS.gene050699 | MS.gene72286 | -0.804504 | 2.09E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene72286 | -0.811206 | 7.86E-51 | -1.69E-46 |
| MS.gene050871 | MS.gene72286 | -0.810806 | 9.60E-51 | -1.69E-46 |
| MS.gene050883 | MS.gene72286 | 0.828504 | 8.67E-55 | -1.69E-46 |
| MS.gene051127 | MS.gene72286 | 0.803604 | 3.22E-49 | -1.69E-46 |
| MS.gene051946 | MS.gene72286 | 0.877943 | 4.19E-69 | -1.69E-46 |
| MS.gene052164 | MS.gene72286 | -0.817629 | 2.99E-52 | -1.69E-46 |
| MS.gene05234 | MS.gene72286 | 0.814565 | 1.44E-51 | -1.69E-46 |
| MS.gene052482 | MS.gene72286 | -0.824148 | 9.45E-54 | -1.69E-46 |
| MS.gene052486 | MS.gene72286 | -0.836592 | 8.55E-57 | -1.69E-46 |
| MS.gene053083 | MS.gene72286 | 0.812564 | 3.98E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene72286 | -0.819415 | 1.18E-52 | -1.69E-46 |
| MS.gene053420 | MS.gene72286 | 0.821662 | 3.58E-53 | -1.69E-46 |
| MS.gene053549 | MS.gene72286 | 0.868019 | 8.91E-66 | -1.69E-46 |
| MS.gene053826 | MS.gene72286 | 0.809835 | 1.55E-50 | -1.69E-46 |
| MS.gene05470 | MS.gene72286 | -0.819305 | 1.25E-52 | -1.69E-46 |
| MS.gene054954 | MS.gene72286 | -0.806544 | 7.81E-50 | -1.69E-46 |
| MS.gene054959 | MS.gene72286 | 0.807524 | 4.85E-50 | -1.69E-46 |
| MS.gene055139 | MS.gene72286 | 0.802011 | 6.87E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene72286 | -0.822139 | 2.78E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene72286 | -0.812562 | 3.98E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene72286 | -0.811126 | 8.18E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene72286 | -0.829711 | 4.42E-55 | -1.69E-46 |
| MS.gene056310 | MS.gene72286 | 0.841196 | 5.50E-58 | -1.69E-46 |
| MS.gene056311 | MS.gene72286 | 0.849137 | 3.92E-60 | -1.69E-46 |
| MS.gene056313 | MS.gene72286 | 0.804498 | 2.10E-49 | -1.69E-46 |
| MS.gene056408 | MS.gene72286 | 0.831413 | 1.69E-55 | -1.69E-46 |
| MS.gene056504 | MS.gene72286 | -0.827028 | 1.96E-54 | -1.69E-46 |
| MS.gene056610 | MS.gene72286 | -0.801302 | 9.60E-49 | -1.69E-46 |
| MS.gene057014 | MS.gene72286 | 0.885575 | 7.23E-72 | -1.69E-46 |
| MS.gene05726 | MS.gene72286 | 0.830747 | 2.47E-55 | -1.69E-46 |
| MS.gene057831 | MS.gene72286 | -0.81506 | 1.12E-51 | -1.69E-46 |
| MS.gene058157 | MS.gene72286 | -0.802311 | 5.96E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene72286 | -0.830183 | 3.39E-55 | -1.69E-46 |
| MS.gene058419 | MS.gene72286 | -0.805207 | 1.49E-49 | -1.69E-46 |
| MS.gene058493 | MS.gene72286 | 0.817025 | 4.08E-52 | -1.69E-46 |
| MS.gene058494 | MS.gene72286 | 0.822826 | 1.92E-53 | -1.69E-46 |
| MS.gene058544 | MS.gene72286 | -0.804249 | 2.37E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene72286 | -0.835568 | 1.56E-56 | -1.69E-46 |
| MS.gene059023 | MS.gene72286 | -0.83215 | 1.11E-55 | -1.69E-46 |
| MS.gene059223 | MS.gene72286 | 0.843856 | 1.08E-58 | -1.69E-46 |
| MS.gene059718 | MS.gene72286 | -0.80403 | 2.63E-49 | -1.69E-46 |
| MS.gene059837 | MS.gene72286 | -0.825599 | 4.29E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene72286 | -0.812803 | 3.53E-51 | -1.69E-46 |
| MS.gene06000 | MS.gene72286 | -0.818885 | 1.55E-52 | -1.69E-46 |
| MS.gene060187 | MS.gene72286 | 0.846617 | 1.94E-59 | -1.69E-46 |
| MS.gene060593 | MS.gene72286 | 0.819335 | 1.23E-52 | -1.69E-46 |
| MS.gene060595 | MS.gene72286 | 0.854683 | 1.05E-61 | -1.69E-46 |
| MS.gene060703 | MS.gene72286 | -0.800723 | 1.26E-48 | -1.69E-46 |
| MS.gene060762 | MS.gene72286 | -0.801427 | 9.05E-49 | -1.69E-46 |
| MS.gene060778 | MS.gene72286 | -0.805418 | 1.35E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene72286 | -0.861678 | 8.66E-64 | -1.69E-46 |
| MS.gene060982 | MS.gene72286 | -0.811459 | 6.93E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72286.t1 | MTR_4g102220 | 96.889 | 225 | 7 | 0 | 1 | 225 | 1 | 225 | 9.53e-160 | 441 |
| MS.gene72286.t1 | MTR_5g011800 | 59.574 | 235 | 79 | 6 | 1 | 225 | 1 | 229 | 2.59e-86 | 255 |
| MS.gene72286.t1 | MTR_5g011820 | 57.021 | 235 | 85 | 7 | 1 | 225 | 4 | 232 | 2.77e-81 | 243 |
| MS.gene72286.t1 | MTR_4g024370 | 52.521 | 238 | 92 | 8 | 1 | 224 | 1 | 231 | 3.02e-72 | 219 |
| MS.gene72286.t1 | MTR_4g024370 | 52.521 | 238 | 92 | 8 | 1 | 224 | 1 | 231 | 3.02e-72 | 219 |
| MS.gene72286.t1 | MTR_4g023950 | 32.143 | 224 | 128 | 8 | 5 | 224 | 4 | 207 | 3.96e-23 | 93.2 |
| MS.gene72286.t1 | MTR_1g076800 | 31.556 | 225 | 132 | 7 | 5 | 224 | 4 | 211 | 9.67e-23 | 92.4 |
| MS.gene72286.t1 | MTR_6g060390 | 30.837 | 227 | 132 | 10 | 5 | 224 | 4 | 212 | 1.11e-22 | 92.0 |
| MS.gene72286.t1 | MTR_6g060440 | 28.444 | 225 | 138 | 7 | 5 | 224 | 4 | 210 | 2.21e-22 | 91.3 |
| MS.gene72286.t1 | MTR_7g117380 | 31.466 | 232 | 134 | 11 | 5 | 224 | 3 | 221 | 4.45e-18 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72286.t1 | AT2G45360 | 54.867 | 226 | 90 | 4 | 1 | 225 | 1 | 215 | 6.92e-72 | 218 |
| MS.gene72286.t1 | AT3G60780 | 51.316 | 228 | 98 | 5 | 1 | 225 | 1 | 218 | 4.50e-69 | 211 |
| MS.gene72286.t1 | AT1G62840 | 49.569 | 232 | 102 | 5 | 1 | 225 | 1 | 224 | 1.00e-60 | 190 |
| MS.gene72286.t1 | AT1G12320 | 47.788 | 226 | 99 | 5 | 1 | 223 | 1 | 210 | 1.50e-51 | 166 |
| MS.gene72286.t1 | AT5G62280 | 29.487 | 234 | 138 | 10 | 5 | 224 | 4 | 224 | 4.10e-16 | 75.1 |
Find 44 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAGATTGTGAGGGAATTA+AGG | 0.232972 | 8.2:+21400470 | MS.gene72286:CDS |
| TAAGGTCACGTCGTGTTGTT+AGG | 0.340628 | 8.2:+21400616 | MS.gene72286:CDS |
| TAGCACATGTTTCAGCTGTT+GGG | 0.366973 | 8.2:+21400673 | MS.gene72286:CDS |
| GGTGGCTAAGTTAAGTGTTA+AGG | 0.386848 | 8.2:+21400512 | MS.gene72286:CDS |
| TTGTTGAGGAAGGAGGATTA+AGG | 0.425189 | 8.2:+21400598 | MS.gene72286:CDS |
| AGGTCGGTGTTTCTTCCTGT+TGG | 0.430254 | 8.2:+21400636 | MS.gene72286:CDS |
| TGCGTTCCATCCTGCTGCCA+TGG | 0.440434 | 8.2:-21400220 | None:intergenic |
| AAGCATGTTGATCAACGGTC+AGG | 0.453278 | 8.2:+21400747 | MS.gene72286:CDS |
| ATGTCAAGTCCCTTCCCAAC+AGG | 0.460059 | 8.2:-21400651 | None:intergenic |
| GGGAATTAAGGATTTGATGA+AGG | 0.460412 | 8.2:+21400482 | MS.gene72286:CDS |
| GGTCGGTGTTTCTTCCTGTT+GGG | 0.463683 | 8.2:+21400637 | MS.gene72286:CDS |
| GTGGCTAAGTTAAGTGTTAA+GGG | 0.463703 | 8.2:+21400513 | MS.gene72286:CDS |
| GTGTTTCTTCCTGTTGGGAA+GGG | 0.468303 | 8.2:+21400642 | MS.gene72286:CDS |
| ATAGCACATGTTTCAGCTGT+TGG | 0.469433 | 8.2:+21400672 | MS.gene72286:CDS |
| AAGAGAAAATGAAACTTGTC+TGG | 0.470997 | 8.2:+21399915 | None:intergenic |
| GGTGTTTCTTCCTGTTGGGA+AGG | 0.479058 | 8.2:+21400641 | MS.gene72286:CDS |
| CATTGAAGAGATAGATTTCG+TGG | 0.482218 | 8.2:+21400446 | MS.gene72286:CDS |
| CTGATTTCAGCCATGGCAGC+AGG | 0.486556 | 8.2:+21400210 | MS.gene72286:CDS |
| GATATTATTGTTGAGGAAGG+AGG | 0.500593 | 8.2:+21400591 | MS.gene72286:CDS |
| TGAAATCAGCTCCGCCATGC+CGG | 0.504005 | 8.2:-21400196 | None:intergenic |
| ACATCAACAGAAATCATTGT+AGG | 0.506787 | 8.2:+21400396 | MS.gene72286:CDS |
| GGTGTAATCGAAACAAGCTT+AGG | 0.508623 | 8.2:+21400273 | MS.gene72286:CDS |
| AGCACATGTTTCAGCTGTTG+GGG | 0.510606 | 8.2:+21400674 | MS.gene72286:CDS |
| GAGGATATTATTGTTGAGGA+AGG | 0.517535 | 8.2:+21400588 | MS.gene72286:CDS |
| GGCGGAGCTGATTTCAGCCA+TGG | 0.524952 | 8.2:+21400203 | MS.gene72286:CDS |
| GGAAAAGATGGTCATGGTCG+TGG | 0.531446 | 8.2:+21400705 | MS.gene72286:CDS |
| GTCACGTCGTGTTGTTAGGT+CGG | 0.536069 | 8.2:+21400620 | MS.gene72286:CDS |
| AGCATGTTGATCAACGGTCA+GGG | 0.549561 | 8.2:+21400748 | MS.gene72286:CDS |
| ATGGGAGGATATTATTGTTG+AGG | 0.550906 | 8.2:+21400584 | MS.gene72286:CDS |
| TTTCGTGGTGGTAGATTGTG+AGG | 0.551539 | 8.2:+21400461 | MS.gene72286:CDS |
| GTCGTGGTGGTAGTAAGAGA+TGG | 0.579545 | 8.2:+21400721 | MS.gene72286:CDS |
| TTTCAGCCATGGCAGCAGGA+TGG | 0.596118 | 8.2:+21400214 | MS.gene72286:CDS |
| ATAGTGGAAACATGGTCAGA+AGG | 0.600619 | 8.2:+21400249 | MS.gene72286:CDS |
| TTCGTGGTGGTAGATTGTGA+GGG | 0.604870 | 8.2:+21400462 | MS.gene72286:CDS |
| GGGAGGTGCATGTTATTAGA+CGG | 0.626486 | 8.2:+21400769 | MS.gene72286:CDS |
| GCATGTTGATCAACGGTCAG+GGG | 0.633202 | 8.2:+21400749 | MS.gene72286:CDS |
| GGATTAAGCATGTTGATCAA+CGG | 0.643256 | 8.2:+21400742 | MS.gene72286:CDS |
| TGTTGATCAACGGTCAGGGG+AGG | 0.647427 | 8.2:+21400752 | MS.gene72286:CDS |
| GTGGAAACATGGTCAGAAGG+AGG | 0.667051 | 8.2:+21400252 | MS.gene72286:CDS |
| AAAGATGGTCATGGTCGTGG+TGG | 0.675881 | 8.2:+21400708 | MS.gene72286:CDS |
| AATTTGGGAAAAGATGGTCA+TGG | 0.694637 | 8.2:+21400699 | MS.gene72286:CDS |
| GCACATGTTTCAGCTGTTGG+GGG | 0.717069 | 8.2:+21400675 | MS.gene72286:CDS |
| TGAAGAGATAGATTTCGTGG+TGG | 0.721855 | 8.2:+21400449 | MS.gene72286:CDS |
| TTTACGTGGATCCGGCATGG+CGG | 0.735740 | 8.2:+21400185 | MS.gene72286:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTATTCAAGATTAATA+TGG | - | chr8.2:21400042-21400061 | None:intergenic | 10.0% |
| !! | ATTATTATTAACAACAGTAA+CGG | - | chr8.2:21400140-21400159 | None:intergenic | 15.0% |
| !!! | TATGTAAGAATGTTAATTTT+AGG | + | chr8.2:21400547-21400566 | MS.gene72286:CDS | 15.0% |
| !! | ACTAGAGTACTCTAAAAAAA+TGG | + | chr8.2:21400362-21400381 | MS.gene72286:CDS | 25.0% |
| !! | CTAGAGTACTCTAAAAAAAT+GGG | + | chr8.2:21400363-21400382 | MS.gene72286:CDS | 25.0% |
| !!! | AAGAATGTTAATTTTAGGAG+TGG | + | chr8.2:21400552-21400571 | MS.gene72286:CDS | 25.0% |
| !!! | AGAATGTTAATTTTAGGAGT+GGG | + | chr8.2:21400553-21400572 | MS.gene72286:CDS | 25.0% |
| ACATCAACAGAAATCATTGT+AGG | + | chr8.2:21400396-21400415 | MS.gene72286:CDS | 30.0% | |
| TCTAAAAAAATGGGTGAACA+AGG | + | chr8.2:21400372-21400391 | MS.gene72286:CDS | 30.0% | |
| ! | ATAGCAAAAAAGCACACAAA+TGG | + | chr8.2:21400303-21400322 | MS.gene72286:CDS | 30.0% |
| ! | TAGCAAAAAAGCACACAAAT+GGG | + | chr8.2:21400304-21400323 | MS.gene72286:CDS | 30.0% |
| ! | TAGGAGTGGGAATTTTAAAT+GGG | + | chr8.2:21400566-21400585 | MS.gene72286:CDS | 30.0% |
| ! | TTAGGAGTGGGAATTTTAAA+TGG | + | chr8.2:21400565-21400584 | MS.gene72286:CDS | 30.0% |
| !! | CAAAAATGATAGTGGAAACA+TGG | + | chr8.2:21400241-21400260 | MS.gene72286:CDS | 30.0% |
| !!! | TCTAGTTTTGATATCTCGTT+TGG | - | chr8.2:21400348-21400367 | None:intergenic | 30.0% |
| AATTTGGGAAAAGATGGTCA+TGG | + | chr8.2:21400699-21400718 | MS.gene72286:CDS | 35.0% | |
| ATGGAACGCAAAAATGATAG+TGG | + | chr8.2:21400233-21400252 | MS.gene72286:CDS | 35.0% | |
| ATGGGAGGATATTATTGTTG+AGG | + | chr8.2:21400584-21400603 | MS.gene72286:CDS | 35.0% | |
| CATGTATGTGTGTAAGGATT+TGG | - | chr8.2:21399994-21400013 | None:intergenic | 35.0% | |
| CATTGAAGAGATAGATTTCG+TGG | + | chr8.2:21400446-21400465 | MS.gene72286:CDS | 35.0% | |
| GAGGATATTATTGTTGAGGA+AGG | + | chr8.2:21400588-21400607 | MS.gene72286:CDS | 35.0% | |
| GATATTATTGTTGAGGAAGG+AGG | + | chr8.2:21400591-21400610 | MS.gene72286:CDS | 35.0% | |
| GGATTAAGCATGTTGATCAA+CGG | + | chr8.2:21400742-21400761 | MS.gene72286:CDS | 35.0% | |
| GGGAATTAAGGATTTGATGA+AGG | + | chr8.2:21400482-21400501 | MS.gene72286:CDS | 35.0% | |
| GTGGCTAAGTTAAGTGTTAA+GGG | + | chr8.2:21400513-21400532 | MS.gene72286:CDS | 35.0% | |
| TTCATGCATGTATGTGTGTA+AGG | - | chr8.2:21400000-21400019 | None:intergenic | 35.0% | |
| !! | GGATTTGATGAAGGTTTTGA+AGG | + | chr8.2:21400491-21400510 | MS.gene72286:CDS | 35.0% |
| !!! | ATGCTTTTGATGCTGTTTCA+GGG | - | chr8.2:21399943-21399962 | None:intergenic | 35.0% |
| !!! | TATGCTTTTGATGCTGTTTC+AGG | - | chr8.2:21399944-21399963 | None:intergenic | 35.0% |
| !!! | TTTGATGAAGGTTTTGAAGG+TGG | + | chr8.2:21400494-21400513 | MS.gene72286:CDS | 35.0% |
| ATAGCACATGTTTCAGCTGT+TGG | + | chr8.2:21400672-21400691 | MS.gene72286:CDS | 40.0% | |
| GGTAGATTGTGAGGGAATTA+AGG | + | chr8.2:21400470-21400489 | MS.gene72286:CDS | 40.0% | |
| GGTGGCTAAGTTAAGTGTTA+AGG | + | chr8.2:21400512-21400531 | MS.gene72286:CDS | 40.0% | |
| GGTGTAATCGAAACAAGCTT+AGG | + | chr8.2:21400273-21400292 | MS.gene72286:CDS | 40.0% | |
| TAGCACATGTTTCAGCTGTT+GGG | + | chr8.2:21400673-21400692 | MS.gene72286:CDS | 40.0% | |
| TGAAGAGATAGATTTCGTGG+TGG | + | chr8.2:21400449-21400468 | MS.gene72286:CDS | 40.0% | |
| TTGTTGAGGAAGGAGGATTA+AGG | + | chr8.2:21400598-21400617 | MS.gene72286:CDS | 40.0% | |
| ! | ATAGTGGAAACATGGTCAGA+AGG | + | chr8.2:21400249-21400268 | MS.gene72286:CDS | 40.0% |
| ! | GAGTGGGAATTTTAAATGGG+AGG | + | chr8.2:21400569-21400588 | MS.gene72286:CDS | 40.0% |
| ! | GTAAAACCTTGCACTGATGT+AGG | - | chr8.2:21400170-21400189 | None:intergenic | 40.0% |
| !!! | TGCTTTTGATGCTGTTTCAG+GGG | - | chr8.2:21399942-21399961 | None:intergenic | 40.0% |
| AAGCATGTTGATCAACGGTC+AGG | + | chr8.2:21400747-21400766 | MS.gene72286:CDS | 45.0% | |
| AGCACATGTTTCAGCTGTTG+GGG | + | chr8.2:21400674-21400693 | MS.gene72286:CDS | 45.0% | |
| AGCATGTTGATCAACGGTCA+GGG | + | chr8.2:21400748-21400767 | MS.gene72286:CDS | 45.0% | |
| GGGGGTAATTTGGGAAAAGA+TGG | + | chr8.2:21400693-21400712 | MS.gene72286:CDS | 45.0% | |
| GTGTTTCTTCCTGTTGGGAA+GGG | + | chr8.2:21400642-21400661 | MS.gene72286:CDS | 45.0% | |
| TCAGCTGTTGGGGGTAATTT+GGG | + | chr8.2:21400684-21400703 | MS.gene72286:CDS | 45.0% | |
| TTCAGCTGTTGGGGGTAATT+TGG | + | chr8.2:21400683-21400702 | MS.gene72286:CDS | 45.0% | |
| TTCGTGGTGGTAGATTGTGA+GGG | + | chr8.2:21400462-21400481 | MS.gene72286:CDS | 45.0% | |
| TTCTGACCTACATCAGTGCA+AGG | + | chr8.2:21400161-21400180 | MS.gene72286:intron | 45.0% | |
| TTTCGTGGTGGTAGATTGTG+AGG | + | chr8.2:21400461-21400480 | MS.gene72286:CDS | 45.0% | |
| ! | CATCAGTGCAAGGTTTTACG+TGG | + | chr8.2:21400171-21400190 | MS.gene72286:intron | 45.0% |
| ! | GGGAGGTGCATGTTATTAGA+CGG | + | chr8.2:21400769-21400788 | MS.gene72286:CDS | 45.0% |
| ! | TAAGGTCACGTCGTGTTGTT+AGG | + | chr8.2:21400616-21400635 | MS.gene72286:CDS | 45.0% |
| ! | TGCAAGGTTTTACGTGGATC+CGG | + | chr8.2:21400177-21400196 | MS.gene72286:CDS | 45.0% |
| AAAGATGGTCATGGTCGTGG+TGG | + | chr8.2:21400708-21400727 | MS.gene72286:CDS | 50.0% | |
| ATGTCAAGTCCCTTCCCAAC+AGG | - | chr8.2:21400654-21400673 | None:intergenic | 50.0% | |
| GCACATGTTTCAGCTGTTGG+GGG | + | chr8.2:21400675-21400694 | MS.gene72286:CDS | 50.0% | |
| GCATGTTGATCAACGGTCAG+GGG | + | chr8.2:21400749-21400768 | MS.gene72286:CDS | 50.0% | |
| GGAAAAGATGGTCATGGTCG+TGG | + | chr8.2:21400705-21400724 | MS.gene72286:CDS | 50.0% | |
| GGTGTTTCTTCCTGTTGGGA+AGG | + | chr8.2:21400641-21400660 | MS.gene72286:CDS | 50.0% | |
| GTCGTGGTGGTAGTAAGAGA+TGG | + | chr8.2:21400721-21400740 | MS.gene72286:CDS | 50.0% | |
| GTGGAAACATGGTCAGAAGG+AGG | + | chr8.2:21400252-21400271 | MS.gene72286:CDS | 50.0% | |
| ! | AGGTCGGTGTTTCTTCCTGT+TGG | + | chr8.2:21400636-21400655 | MS.gene72286:CDS | 50.0% |
| ! | GGTCGGTGTTTCTTCCTGTT+GGG | + | chr8.2:21400637-21400656 | MS.gene72286:CDS | 50.0% |
| ! | GTCACGTCGTGTTGTTAGGT+CGG | + | chr8.2:21400620-21400639 | MS.gene72286:CDS | 50.0% |
| CTGATTTCAGCCATGGCAGC+AGG | + | chr8.2:21400210-21400229 | MS.gene72286:CDS | 55.0% | |
| TGAAATCAGCTCCGCCATGC+CGG | - | chr8.2:21400199-21400218 | None:intergenic | 55.0% | |
| TGTTGATCAACGGTCAGGGG+AGG | + | chr8.2:21400752-21400771 | MS.gene72286:CDS | 55.0% | |
| TTTACGTGGATCCGGCATGG+CGG | + | chr8.2:21400185-21400204 | MS.gene72286:CDS | 55.0% | |
| TTTCAGCCATGGCAGCAGGA+TGG | + | chr8.2:21400214-21400233 | MS.gene72286:CDS | 55.0% | |
| ! | GGTTTTACGTGGATCCGGCA+TGG | + | chr8.2:21400182-21400201 | MS.gene72286:CDS | 55.0% |
| TGCGTTCCATCCTGCTGCCA+TGG | - | chr8.2:21400223-21400242 | None:intergenic | 60.0% | |
| ! | GGCGGAGCTGATTTCAGCCA+TGG | + | chr8.2:21400203-21400222 | MS.gene72286:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 21399923 | 21400794 | 21399923 | ID=MS.gene72286 |
| chr8.2 | mRNA | 21399923 | 21400794 | 21399923 | ID=MS.gene72286.t1;Parent=MS.gene72286 |
| chr8.2 | exon | 21399923 | 21399982 | 21399923 | ID=MS.gene72286.t1.exon1;Parent=MS.gene72286.t1 |
| chr8.2 | CDS | 21399923 | 21399982 | 21399923 | ID=cds.MS.gene72286.t1;Parent=MS.gene72286.t1 |
| chr8.2 | exon | 21400177 | 21400794 | 21400177 | ID=MS.gene72286.t1.exon2;Parent=MS.gene72286.t1 |
| chr8.2 | CDS | 21400177 | 21400794 | 21400177 | ID=cds.MS.gene72286.t1;Parent=MS.gene72286.t1 |
| Gene Sequence |
| Protein sequence |
