Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066417.t1 | KEH41598.1 | 94.2 | 292 | 17 | 0 | 1 | 292 | 43 | 334 | 1.60E-167 | 598.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066417.t1 | A0A072VU01 | 94.2 | 292 | 17 | 0 | 1 | 292 | 43 | 334 | 1.1e-167 | 598.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene066417 | 0.806875 | 6.65E-50 | -1.69E-46 |
| MS.gene049549 | MS.gene066417 | 0.837734 | 4.36E-57 | -1.69E-46 |
| MS.gene049813 | MS.gene066417 | 0.817556 | 3.10E-52 | -1.69E-46 |
| MS.gene050720 | MS.gene066417 | 0.815663 | 8.24E-52 | -1.69E-46 |
| MS.gene050722 | MS.gene066417 | 0.80028 | 1.55E-48 | -1.69E-46 |
| MS.gene051044 | MS.gene066417 | 0.805146 | 1.54E-49 | -1.69E-46 |
| MS.gene05104 | MS.gene066417 | 0.804678 | 1.93E-49 | -1.69E-46 |
| MS.gene051127 | MS.gene066417 | 0.805173 | 1.52E-49 | -1.69E-46 |
| MS.gene051131 | MS.gene066417 | 0.811889 | 5.58E-51 | -1.69E-46 |
| MS.gene051138 | MS.gene066417 | 0.809423 | 1.91E-50 | -1.69E-46 |
| MS.gene052211 | MS.gene066417 | 0.848454 | 6.07E-60 | -1.69E-46 |
| MS.gene052212 | MS.gene066417 | 0.817559 | 3.10E-52 | -1.69E-46 |
| MS.gene052403 | MS.gene066417 | 0.80513 | 1.55E-49 | -1.69E-46 |
| MS.gene05240 | MS.gene066417 | 0.861098 | 1.30E-63 | -1.69E-46 |
| MS.gene052606 | MS.gene066417 | 0.827508 | 1.50E-54 | -1.69E-46 |
| MS.gene052702 | MS.gene066417 | 0.801163 | 1.03E-48 | -1.69E-46 |
| MS.gene053031 | MS.gene066417 | 0.803881 | 2.82E-49 | -1.69E-46 |
| MS.gene053406 | MS.gene066417 | 0.831698 | 1.44E-55 | -1.69E-46 |
| MS.gene053420 | MS.gene066417 | 0.805084 | 1.58E-49 | -1.69E-46 |
| MS.gene053887 | MS.gene066417 | 0.840713 | 7.37E-58 | -1.69E-46 |
| MS.gene054138 | MS.gene066417 | 0.801036 | 1.09E-48 | -1.69E-46 |
| MS.gene054146 | MS.gene066417 | 0.822935 | 1.81E-53 | -1.69E-46 |
| MS.gene054147 | MS.gene066417 | 0.809358 | 1.97E-50 | -1.69E-46 |
| MS.gene054277 | MS.gene066417 | 0.842517 | 2.46E-58 | -1.69E-46 |
| MS.gene054742 | MS.gene066417 | 0.836575 | 8.64E-57 | -1.69E-46 |
| MS.gene05483 | MS.gene066417 | 0.8267 | 2.35E-54 | -1.69E-46 |
| MS.gene054884 | MS.gene066417 | 0.802953 | 4.39E-49 | -1.69E-46 |
| MS.gene055240 | MS.gene066417 | 0.804201 | 2.42E-49 | -1.69E-46 |
| MS.gene056218 | MS.gene066417 | 0.811517 | 6.73E-51 | -1.69E-46 |
| MS.gene056224 | MS.gene066417 | 0.811419 | 7.07E-51 | -1.69E-46 |
| MS.gene056590 | MS.gene066417 | 0.851265 | 9.93E-61 | -1.69E-46 |
| MS.gene056591 | MS.gene066417 | 0.85132 | 9.58E-61 | -1.69E-46 |
| MS.gene056748 | MS.gene066417 | 0.809833 | 1.56E-50 | -1.69E-46 |
| MS.gene056856 | MS.gene066417 | 0.804086 | 2.56E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene066417 | 0.810899 | 9.16E-51 | -1.69E-46 |
| MS.gene057261 | MS.gene066417 | 0.83093 | 2.22E-55 | -1.69E-46 |
| MS.gene057544 | MS.gene066417 | 0.820353 | 7.18E-53 | -1.69E-46 |
| MS.gene057547 | MS.gene066417 | 0.813181 | 2.91E-51 | -1.69E-46 |
| MS.gene057550 | MS.gene066417 | 0.813585 | 2.38E-51 | -1.69E-46 |
| MS.gene057768 | MS.gene066417 | 0.812009 | 5.26E-51 | -1.69E-46 |
| MS.gene058099 | MS.gene066417 | 0.830284 | 3.20E-55 | -1.69E-46 |
| MS.gene058381 | MS.gene066417 | 0.815198 | 1.05E-51 | -1.69E-46 |
| MS.gene058450 | MS.gene066417 | 0.818962 | 1.49E-52 | -1.69E-46 |
| MS.gene058603 | MS.gene066417 | 0.820142 | 8.02E-53 | -1.69E-46 |
| MS.gene059060 | MS.gene066417 | 0.803584 | 3.25E-49 | -1.69E-46 |
| MS.gene059953 | MS.gene066417 | 0.826933 | 2.07E-54 | -1.69E-46 |
| MS.gene059955 | MS.gene066417 | 0.823734 | 1.18E-53 | -1.69E-46 |
| MS.gene060087 | MS.gene066417 | 0.818566 | 1.83E-52 | -1.69E-46 |
| MS.gene060358 | MS.gene066417 | 0.84581 | 3.22E-59 | -1.69E-46 |
| MS.gene060593 | MS.gene066417 | 0.82368 | 1.22E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066417.t1 | MTR_1g052640 | 94.178 | 292 | 17 | 0 | 1 | 292 | 43 | 334 | 0.0 | 582 |
| MS.gene066417.t1 | MTR_1g052640 | 94.178 | 292 | 17 | 0 | 1 | 292 | 43 | 334 | 0.0 | 581 |
| MS.gene066417.t1 | MTR_0083s0100 | 87.671 | 292 | 36 | 0 | 1 | 292 | 43 | 334 | 0.0 | 555 |
| MS.gene066417.t1 | MTR_1g052640 | 95.436 | 241 | 11 | 0 | 1 | 241 | 43 | 283 | 1.05e-176 | 489 |
| MS.gene066417.t1 | MTR_2g030470 | 79.452 | 292 | 59 | 1 | 1 | 292 | 458 | 748 | 7.41e-173 | 499 |
| MS.gene066417.t1 | MTR_2g030470 | 77.397 | 292 | 65 | 1 | 1 | 292 | 46 | 336 | 7.22e-167 | 484 |
| MS.gene066417.t1 | MTR_2g030480 | 73.973 | 292 | 55 | 2 | 1 | 292 | 43 | 313 | 2.21e-161 | 454 |
| MS.gene066417.t1 | MTR_2g030460 | 70.307 | 293 | 85 | 2 | 1 | 292 | 43 | 334 | 6.75e-161 | 451 |
| MS.gene066417.t1 | MTR_2g030460 | 70.307 | 293 | 85 | 2 | 1 | 292 | 43 | 334 | 8.79e-160 | 451 |
| MS.gene066417.t1 | MTR_4g094555 | 62.333 | 300 | 104 | 2 | 1 | 292 | 40 | 338 | 6.19e-142 | 407 |
| MS.gene066417.t1 | MTR_4g094560 | 62.671 | 292 | 106 | 2 | 1 | 292 | 40 | 328 | 1.41e-141 | 405 |
| MS.gene066417.t1 | MTR_4g094570 | 61.000 | 300 | 108 | 2 | 1 | 292 | 40 | 338 | 1.29e-138 | 398 |
| MS.gene066417.t1 | MTR_6g048310 | 61.204 | 299 | 108 | 3 | 1 | 292 | 39 | 336 | 1.46e-138 | 397 |
| MS.gene066417.t1 | MTR_4g094550 | 61.333 | 300 | 107 | 2 | 1 | 292 | 41 | 339 | 2.39e-138 | 397 |
| MS.gene066417.t1 | MTR_4g094562 | 60.000 | 300 | 111 | 2 | 1 | 292 | 40 | 338 | 3.03e-137 | 394 |
| MS.gene066417.t1 | MTR_4g094548 | 59.136 | 301 | 113 | 2 | 1 | 292 | 41 | 340 | 1.63e-135 | 390 |
| MS.gene066417.t1 | MTR_6g048350 | 59.667 | 300 | 112 | 2 | 1 | 292 | 40 | 338 | 3.87e-135 | 389 |
| MS.gene066417.t1 | MTR_4g094562 | 60.081 | 248 | 90 | 2 | 1 | 240 | 40 | 286 | 7.47e-112 | 326 |
| MS.gene066417.t1 | MTR_4g094565 | 55.602 | 241 | 84 | 3 | 1 | 240 | 40 | 258 | 2.35e-92 | 276 |
| MS.gene066417.t1 | MTR_4g094565 | 55.417 | 240 | 84 | 3 | 1 | 239 | 40 | 257 | 1.29e-91 | 276 |
| MS.gene066417.t1 | MTR_8g039300 | 41.042 | 307 | 155 | 7 | 1 | 292 | 38 | 333 | 1.19e-86 | 265 |
| MS.gene066417.t1 | MTR_6g089930 | 40.065 | 307 | 158 | 7 | 1 | 292 | 38 | 333 | 3.01e-85 | 261 |
| MS.gene066417.t1 | MTR_6g090090 | 42.345 | 307 | 141 | 8 | 1 | 292 | 64 | 349 | 9.20e-85 | 261 |
| MS.gene066417.t1 | MTR_3g035040 | 39.739 | 307 | 159 | 7 | 1 | 292 | 38 | 333 | 7.31e-81 | 250 |
| MS.gene066417.t1 | MTR_1g035220 | 39.414 | 307 | 139 | 8 | 1 | 292 | 38 | 312 | 9.48e-72 | 225 |
| MS.gene066417.t1 | MTR_1g062750 | 44.118 | 238 | 113 | 6 | 19 | 241 | 2 | 234 | 5.93e-66 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066417.t1 | AT5G61820 | 51.757 | 313 | 122 | 5 | 2 | 292 | 41 | 346 | 7.90e-111 | 329 |
| MS.gene066417.t1 | AT5G61820 | 51.757 | 313 | 122 | 5 | 2 | 292 | 41 | 346 | 7.90e-111 | 329 |
Find 63 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATACCTGATTGGCTATT+TGG | 0.105184 | 1.3:+35860931 | None:intergenic |
| CAATTGGGATGTTAACTTTA+TGG | 0.150822 | 1.3:-35860524 | MS.gene066417:CDS |
| CATTTCTCCACATATCCTTT+TGG | 0.260888 | 1.3:+35860775 | None:intergenic |
| ATCTTGCACTTGCTATTATC+AGG | 0.317724 | 1.3:+35860607 | None:intergenic |
| TCCTGGATTTAGTTCAATCT+TGG | 0.319107 | 1.3:+35861122 | None:intergenic |
| GCAATTGGATCAACTCTCTA+TGG | 0.335304 | 1.3:-35859506 | MS.gene066417:CDS |
| GCTTTAAGTCCAAATTATAA+AGG | 0.347307 | 1.3:-35860646 | MS.gene066417:CDS |
| ACACTGTTATGTGGATCAAT+TGG | 0.348538 | 1.3:-35860540 | MS.gene066417:CDS |
| TTAGGACAATACTATGGTCT+TGG | 0.372734 | 1.3:-35860871 | MS.gene066417:CDS |
| CTTTAAGTCCAAATTATAAA+GGG | 0.373217 | 1.3:-35860645 | MS.gene066417:CDS |
| TTAAGAAAATAATACCTGAT+TGG | 0.381244 | 1.3:+35860923 | None:intergenic |
| GCGAGCTTCCCAATGCAAAA+TGG | 0.381323 | 1.3:-35859569 | MS.gene066417:CDS |
| AATGGAGGTTATGTCATCTA+TGG | 0.382620 | 1.3:-35859551 | MS.gene066417:CDS |
| ACATATATTCCAGACCCTTA+TGG | 0.385689 | 1.3:-35860826 | MS.gene066417:CDS |
| CAAAAGGATATGTGGAGAAA+TGG | 0.401639 | 1.3:-35860774 | MS.gene066417:CDS |
| AATGTCACAAAAGATGAAAA+TGG | 0.403395 | 1.3:-35860673 | MS.gene066417:CDS |
| ACTTTATTTGAAACAAATCC+TGG | 0.406209 | 1.3:+35861105 | None:intergenic |
| CCTGGATTTAGTTCAATCTT+GGG | 0.408000 | 1.3:+35861123 | None:intergenic |
| CATCTACATACAGGTGCAAT+TGG | 0.410018 | 1.3:-35859521 | MS.gene066417:CDS |
| TAACAGTGTATTTCAAATAG+AGG | 0.418472 | 1.3:+35860554 | None:intergenic |
| GTGACACCAAATAGCCAATC+AGG | 0.433825 | 1.3:-35860937 | MS.gene066417:CDS |
| ATCAAACTTATCTACACCAT+TGG | 0.445662 | 1.3:-35860990 | MS.gene066417:CDS |
| TTGAGTGAAATATGACCTCT+TGG | 0.446302 | 1.3:+35861063 | None:intergenic |
| AATGGTGTAGATAAGTTTGA+TGG | 0.446934 | 1.3:+35860992 | None:intergenic |
| TACGAGGGGTGTGGATGATC+GGG | 0.452472 | 1.3:-35860728 | MS.gene066417:CDS |
| TTACCAACTTCTATACCATA+AGG | 0.456109 | 1.3:+35860811 | None:intergenic |
| CCCAAGATTGAACTAAATCC+AGG | 0.471202 | 1.3:-35861123 | MS.gene066417:CDS |
| ATACGAGGGGTGTGGATGAT+CGG | 0.480331 | 1.3:-35860729 | MS.gene066417:CDS |
| GACCCTTATGGTATAGAAGT+TGG | 0.491257 | 1.3:-35860814 | MS.gene066417:CDS |
| TCAAATATATAAACCTTGAC+CGG | 0.492889 | 1.3:+35860499 | None:intergenic |
| TCAAACTTATCTACACCATT+GGG | 0.498383 | 1.3:-35860989 | MS.gene066417:CDS |
| ATTTGAAATACACTGTTATG+TGG | 0.500021 | 1.3:-35860549 | MS.gene066417:CDS |
| GGATGTTAACTTTATGGTGC+CGG | 0.509600 | 1.3:-35860518 | MS.gene066417:CDS |
| TTTAAGTCCAAATTATAAAG+GGG | 0.517788 | 1.3:-35860644 | MS.gene066417:CDS |
| TAACTTTATGGTGCCGGTCA+AGG | 0.519810 | 1.3:-35860512 | MS.gene066417:CDS |
| CACTGTTATGTGGATCAATT+GGG | 0.525717 | 1.3:-35860539 | MS.gene066417:CDS |
| ACTTCTATACCATAAGGGTC+TGG | 0.525886 | 1.3:+35860817 | None:intergenic |
| TACCAACTTCTATACCATAA+GGG | 0.529409 | 1.3:+35860812 | None:intergenic |
| AAGCTGTCAGATAAGTCTAA+AGG | 0.529906 | 1.3:-35860460 | MS.gene066417:CDS |
| AATCCTGCTGAAATTCCAAA+AGG | 0.539077 | 1.3:-35860790 | MS.gene066417:CDS |
| GGAGTTGGTCATCTACATAC+AGG | 0.539806 | 1.3:-35859530 | MS.gene066417:CDS |
| TGGATCAACTCTCTATGGAC+AGG | 0.540317 | 1.3:-35859501 | None:intergenic |
| ATTGTCCTAAAACATCCTCT+TGG | 0.543744 | 1.3:+35860884 | None:intergenic |
| GCTGAGCTAGTTGATGATGC+AGG | 0.547375 | 1.3:-35861030 | MS.gene066417:CDS |
| GGTTATGTCATCTATGGAGT+TGG | 0.568181 | 1.3:-35859545 | MS.gene066417:CDS |
| TGAAATTCCAAAAGGATATG+TGG | 0.569404 | 1.3:-35860782 | MS.gene066417:CDS |
| TTAAGTCCAAATTATAAAGG+GGG | 0.578725 | 1.3:-35860643 | MS.gene066417:CDS |
| AGCAAGTGCAAGATGAGGAA+AGG | 0.579934 | 1.3:-35860598 | MS.gene066417:CDS |
| GAGGGGTGTGGATGATCGGG+TGG | 0.585742 | 1.3:-35860725 | MS.gene066417:CDS |
| GAGTATAAAGCATGATTGCA+AGG | 0.590917 | 1.3:-35860434 | MS.gene066417:intron |
| TGTAGATAAGTTTGATGGAG+AGG | 0.591197 | 1.3:+35860997 | None:intergenic |
| TGCAATTGATACGAGGGGTG+TGG | 0.598035 | 1.3:-35860737 | MS.gene066417:CDS |
| AAAAGTAATGTGAGTGATAG+CGG | 0.599635 | 1.3:-35859611 | MS.gene066417:CDS |
| AGGGGTGTGGATGATCGGGT+GGG | 0.600563 | 1.3:-35860724 | MS.gene066417:CDS |
| ACAATACTATGGTCTTGGAT+CGG | 0.617680 | 1.3:-35860866 | MS.gene066417:CDS |
| TGTTCATGCAATTGATACGA+GGG | 0.617695 | 1.3:-35860743 | MS.gene066417:CDS |
| CTGAGCTAGTTGATGATGCA+GGG | 0.637972 | 1.3:-35861029 | MS.gene066417:CDS |
| TATGATGTTGAGTTTCCAAG+AGG | 0.638000 | 1.3:-35861078 | MS.gene066417:CDS |
| ATAATAGCAAGTGCAAGATG+AGG | 0.647427 | 1.3:-35860603 | MS.gene066417:CDS |
| AGCTTCCCAATGCAAAATGG+AGG | 0.656715 | 1.3:-35859566 | MS.gene066417:CDS |
| AGTATCTTATAACAACCCAA+TGG | 0.662577 | 1.3:+35860974 | None:intergenic |
| ATGTTCATGCAATTGATACG+AGG | 0.665580 | 1.3:-35860744 | MS.gene066417:CDS |
| GTTCATGCAATTGATACGAG+GGG | 0.696381 | 1.3:-35860742 | MS.gene066417:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr1.3:35860524-35860543 | MS.gene066417:CDS | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr1.3:35860543-35860524 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr1.3:35860525-35860544 | MS.gene066417:CDS | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr1.3:35860544-35860525 | None:intergenic | 0.0% |
| !!! | ATTATTTTCTTAAGAAATAA+TGG | - | chr1.3:35859718-35859737 | MS.gene066417:intron | 10.0% |
| !! | AGAGATTATTCTTTAAATAC+AGG | - | chr1.3:35860971-35860990 | MS.gene066417:CDS | 20.0% |
| !! | CTTTAAGTCCAAATTATAAA+GGG | - | chr1.3:35859986-35860005 | MS.gene066417:intron | 20.0% |
| !! | TTAAGAAAATAATACCTGAT+TGG | + | chr1.3:35859711-35859730 | None:intergenic | 20.0% |
| !! | TTTAAGTCCAAATTATAAAG+GGG | - | chr1.3:35859987-35860006 | MS.gene066417:intron | 20.0% |
| !!! | TAAATTTGAGATCATTAAGT+AGG | + | chr1.3:35860302-35860321 | None:intergenic | 20.0% |
| !!! | TCAAATAGAGGTTTTTTTTT+GGG | + | chr1.3:35860068-35860087 | None:intergenic | 20.0% |
| !!! | TTATTGTTTTACATAGTCTA+TGG | - | chr1.3:35860262-35860281 | MS.gene066417:intron | 20.0% |
| !!! | TTCAAATAGAGGTTTTTTTT+TGG | + | chr1.3:35860069-35860088 | None:intergenic | 20.0% |
| ! | AAGTAGTTAAATACACCTTA+AGG | - | chr1.3:35860823-35860842 | MS.gene066417:CDS | 25.0% |
| ! | AAGTTGTTAAATACACCTTA+AGG | - | chr1.3:35860677-35860696 | MS.gene066417:CDS | 25.0% |
| ! | AATGTCACAAAAGATGAAAA+TGG | - | chr1.3:35859958-35859977 | MS.gene066417:intron | 25.0% |
| ! | ACACCTTAATAAAAACTAGT+GGG | + | chr1.3:35860634-35860653 | None:intergenic | 25.0% |
| ! | ATAAAAGACACCTTCATAAA+AGG | + | chr1.3:35860356-35860375 | None:intergenic | 25.0% |
| ! | TAACAGTGTATTTCAAATAG+AGG | + | chr1.3:35860080-35860099 | None:intergenic | 25.0% |
| ! | TCAAATATATAAACCTTGAC+CGG | + | chr1.3:35860135-35860154 | None:intergenic | 25.0% |
| ! | TCACCTTGTAAAAAATAAGT+GGG | - | chr1.3:35860716-35860735 | MS.gene066417:CDS | 25.0% |
| ! | TTAAGTCCAAATTATAAAGG+GGG | - | chr1.3:35859988-35860007 | MS.gene066417:intron | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | + | chr1.3:35860781-35860800 | None:intergenic | 25.0% |
| !! | ACTTTATTTGAAACAAATCC+TGG | + | chr1.3:35859529-35859548 | None:intergenic | 25.0% |
| !! | ATTTGAAATACACTGTTATG+TGG | - | chr1.3:35860082-35860101 | MS.gene066417:intron | 25.0% |
| !! | GCTTTAAGTCCAAATTATAA+AGG | - | chr1.3:35859985-35860004 | MS.gene066417:intron | 25.0% |
| AAAAGTAATGTGAGTGATAG+CGG | - | chr1.3:35861020-35861039 | MS.gene066417:CDS | 30.0% | |
| AAAGTGAAAATCACACCTTA+AGG | - | chr1.3:35860453-35860472 | MS.gene066417:CDS | 30.0% | |
| AATGGTGTAGATAAGTTTGA+TGG | + | chr1.3:35859642-35859661 | None:intergenic | 30.0% | |
| AGTATCTTATAACAACCCAA+TGG | + | chr1.3:35859660-35859679 | None:intergenic | 30.0% | |
| ATACCTTCCTAAAAGTAAGT+TGG | + | chr1.3:35860411-35860430 | None:intergenic | 30.0% | |
| ATCAAACTTATCTACACCAT+TGG | - | chr1.3:35859641-35859660 | MS.gene066417:CDS | 30.0% | |
| CAATTGGGATGTTAACTTTA+TGG | - | chr1.3:35860107-35860126 | MS.gene066417:intron | 30.0% | |
| CACACCTTAATAAAAACTAG+TGG | + | chr1.3:35860635-35860654 | None:intergenic | 30.0% | |
| CTCACCTTGTAAAAAATAAG+TGG | - | chr1.3:35860715-35860734 | MS.gene066417:CDS | 30.0% | |
| TACCAACTTCTATACCATAA+GGG | + | chr1.3:35859822-35859841 | None:intergenic | 30.0% | |
| TCAAACTTATCTACACCATT+GGG | - | chr1.3:35859642-35859661 | MS.gene066417:intron | 30.0% | |
| TGAAATTCCAAAAGGATATG+TGG | - | chr1.3:35859849-35859868 | MS.gene066417:intron | 30.0% | |
| TTACCAACTTCTATACCATA+AGG | + | chr1.3:35859823-35859842 | None:intergenic | 30.0% | |
| ! | AAGATGAGGAAAGGATTTTT+AGG | - | chr1.3:35860042-35860061 | MS.gene066417:intron | 30.0% |
| ! | ATAATACCTGATTGGCTATT+TGG | + | chr1.3:35859703-35859722 | None:intergenic | 30.0% |
| ! | ATAGAAGACACCTTTTATGA+AGG | - | chr1.3:35860343-35860362 | MS.gene066417:intron | 30.0% |
| ! | CACACCTTCTAAAAAATAAG+TGG | + | chr1.3:35860782-35860801 | None:intergenic | 30.0% |
| ! | CATCTTTTGTGACATTGTAT+AGG | + | chr1.3:35859954-35859973 | None:intergenic | 30.0% |
| ! | TATATATATAGGGGTTTGCT+AGG | - | chr1.3:35860603-35860622 | MS.gene066417:CDS | 30.0% |
| ! | TTTTAGCAACATTCACCTTA+AGG | + | chr1.3:35860695-35860714 | None:intergenic | 30.0% |
| ! | TTTTATCAAGTCACACCTTA+AGG | + | chr1.3:35860471-35860490 | None:intergenic | 30.0% |
| !! | AAAGACACCAACTTACTTTT+AGG | - | chr1.3:35860401-35860420 | MS.gene066417:intron | 30.0% |
| !!! | ACACCCACTAGTTTTTATTA+AGG | - | chr1.3:35860628-35860647 | MS.gene066417:CDS | 30.0% |
| !!! | ACACCCACTTATTTTTTACA+AGG | + | chr1.3:35860722-35860741 | None:intergenic | 30.0% |
| !!! | ACACCCACTTATTTTTTAGA+AGG | - | chr1.3:35860775-35860794 | MS.gene066417:CDS | 30.0% |
| !!! | CTATTTGGTGTCACATTTTT+AGG | + | chr1.3:35859688-35859707 | None:intergenic | 30.0% |
| !!! | GATGTTTTAGGACAATACTA+TGG | - | chr1.3:35859754-35859773 | MS.gene066417:intron | 30.0% |
| AACTCCTATAAGCATTTGCT+AGG | - | chr1.3:35860750-35860769 | MS.gene066417:CDS | 35.0% | |
| AAGCTGTCAGATAAGTCTAA+AGG | - | chr1.3:35860171-35860190 | MS.gene066417:intron | 35.0% | |
| AATCCTGCTGAAATTCCAAA+AGG | - | chr1.3:35859841-35859860 | MS.gene066417:intron | 35.0% | |
| AATGGAGGTTATGTCATCTA+TGG | - | chr1.3:35861080-35861099 | MS.gene066417:CDS | 35.0% | |
| ACACTGTTATGTGGATCAAT+TGG | - | chr1.3:35860091-35860110 | MS.gene066417:intron | 35.0% | |
| ACATATATTCCAGACCCTTA+TGG | - | chr1.3:35859805-35859824 | MS.gene066417:intron | 35.0% | |
| ACTCCCACATATAAACTAGT+GGG | - | chr1.3:35860862-35860881 | MS.gene066417:CDS | 35.0% | |
| ATAAAGCATGATTGCAAGGT+GGG | - | chr1.3:35860201-35860220 | MS.gene066417:intron | 35.0% | |
| ATAATAGCAAGTGCAAGATG+AGG | - | chr1.3:35860028-35860047 | MS.gene066417:intron | 35.0% | |
| ATGTTCATGCAATTGATACG+AGG | - | chr1.3:35859887-35859906 | MS.gene066417:intron | 35.0% | |
| ATTGTCCTAAAACATCCTCT+TGG | + | chr1.3:35859750-35859769 | None:intergenic | 35.0% | |
| CAAAAGGATATGTGGAGAAA+TGG | - | chr1.3:35859857-35859876 | MS.gene066417:intron | 35.0% | |
| CACTGTTATGTGGATCAATT+GGG | - | chr1.3:35860092-35860111 | MS.gene066417:intron | 35.0% | |
| GAGTATAAAGCATGATTGCA+AGG | - | chr1.3:35860197-35860216 | MS.gene066417:intron | 35.0% | |
| GTATCCTAGCAAATGCTTAT+AGG | + | chr1.3:35860757-35860776 | None:intergenic | 35.0% | |
| TATAAAGCATGATTGCAAGG+TGG | - | chr1.3:35860200-35860219 | MS.gene066417:intron | 35.0% | |
| TATGATGTTGAGTTTCCAAG+AGG | - | chr1.3:35859553-35859572 | MS.gene066417:CDS | 35.0% | |
| TGATAAAAGACACCACCAAA+GGG | - | chr1.3:35860483-35860502 | MS.gene066417:CDS | 35.0% | |
| TGCAAACCCCCTTTATAATT+TGG | + | chr1.3:35859997-35860016 | None:intergenic | 35.0% | |
| TGTAGATAAGTTTGATGGAG+AGG | + | chr1.3:35859637-35859656 | None:intergenic | 35.0% | |
| TGTTCATGCAATTGATACGA+GGG | - | chr1.3:35859888-35859907 | MS.gene066417:intron | 35.0% | |
| TTAGGACAATACTATGGTCT+TGG | - | chr1.3:35859760-35859779 | MS.gene066417:intron | 35.0% | |
| TTGAGTGAAATATGACCTCT+TGG | + | chr1.3:35859571-35859590 | None:intergenic | 35.0% | |
| TTGATAAAAGACACCACCAA+AGG | - | chr1.3:35860482-35860501 | MS.gene066417:CDS | 35.0% | |
| ! | AAATAATGGCTTTTGCCAAG+AGG | - | chr1.3:35859732-35859751 | MS.gene066417:intron | 35.0% |
| ! | ACAATACTATGGTCTTGGAT+CGG | - | chr1.3:35859765-35859784 | MS.gene066417:intron | 35.0% |
| ! | ACACCCACTAGTTTATATGT+GGG | + | chr1.3:35860868-35860887 | None:intergenic | 35.0% |
| ! | ACATAACCTCCATTTTGCAT+TGG | + | chr1.3:35861074-35861093 | None:intergenic | 35.0% |
| ! | CATAACCTCCATTTTGCATT+GGG | + | chr1.3:35861073-35861092 | None:intergenic | 35.0% |
| ! | CATTTCTCCACATATCCTTT+TGG | + | chr1.3:35859859-35859878 | None:intergenic | 35.0% |
| ! | CCTGGATTTAGTTCAATCTT+GGG | + | chr1.3:35859511-35859530 | None:intergenic | 35.0% |
| ! | TCCTGGATTTAGTTCAATCT+TGG | + | chr1.3:35859512-35859531 | None:intergenic | 35.0% |
| ! | TTTTAGCAAGCTACACCTTA+AGG | + | chr1.3:35860841-35860860 | None:intergenic | 35.0% |
| ! | TTTTGCCAAGAGGATGTTTT+AGG | - | chr1.3:35859742-35859761 | MS.gene066417:intron | 35.0% |
| !! | ACACCAACTTACTTTTAGGA+AGG | - | chr1.3:35860405-35860424 | MS.gene066417:intron | 35.0% |
| !! | ATCTTGCACTTGCTATTATC+AGG | + | chr1.3:35860027-35860046 | None:intergenic | 35.0% |
| !!! | TATCCTTTTGGAATTTCAGC+AGG | + | chr1.3:35859847-35859866 | None:intergenic | 35.0% |
| !!! | TTGGTGTCACATTTTTAGGT+TGG | + | chr1.3:35859684-35859703 | None:intergenic | 35.0% |
| ACTTCTATACCATAAGGGTC+TGG | + | chr1.3:35859817-35859836 | None:intergenic | 40.0% | |
| CACTCCCACATATAAACTAG+TGG | - | chr1.3:35860861-35860880 | MS.gene066417:CDS | 40.0% | |
| CATCTACATACAGGTGCAAT+TGG | - | chr1.3:35861110-35861129 | MS.gene066417:CDS | 40.0% | |
| CCCAAGATTGAACTAAATCC+AGG | - | chr1.3:35859508-35859527 | MS.gene066417:CDS | 40.0% | |
| GACCCTTATGGTATAGAAGT+TGG | - | chr1.3:35859817-35859836 | MS.gene066417:intron | 40.0% | |
| GCAATTGGATCAACTCTCTA+TGG | - | chr1.3:35861125-35861144 | MS.gene066417:CDS | 40.0% | |
| GGATGTTAACTTTATGGTGC+CGG | - | chr1.3:35860113-35860132 | MS.gene066417:intron | 40.0% | |
| GGTTATGTCATCTATGGAGT+TGG | - | chr1.3:35861086-35861105 | MS.gene066417:CDS | 40.0% | |
| GTTCATGCAATTGATACGAG+GGG | - | chr1.3:35859889-35859908 | MS.gene066417:intron | 40.0% | |
| TTATGTTACAAGCCACCCTT+TGG | + | chr1.3:35860501-35860520 | None:intergenic | 40.0% | |
| ! | CACACCCACTAGTTTATATG+TGG | + | chr1.3:35860869-35860888 | None:intergenic | 40.0% |
| !! | CTCACATTACTTTTGCTGCA+TGG | + | chr1.3:35861014-35861033 | None:intergenic | 40.0% |
| AGCAAGTGCAAGATGAGGAA+AGG | - | chr1.3:35860033-35860052 | MS.gene066417:intron | 45.0% | |
| AGCTTCCCAATGCAAAATGG+AGG | - | chr1.3:35861065-35861084 | MS.gene066417:CDS | 45.0% | |
| GTGACACCAAATAGCCAATC+AGG | - | chr1.3:35859694-35859713 | MS.gene066417:intron | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | - | chr1.3:35860486-35860505 | MS.gene066417:CDS | 45.0% | |
| ! | GGAGTTGGTCATCTACATAC+AGG | - | chr1.3:35861101-35861120 | MS.gene066417:CDS | 45.0% |
| !! | CTGAGCTAGTTGATGATGCA+GGG | - | chr1.3:35859602-35859621 | MS.gene066417:CDS | 45.0% |
| !! | TAACTTTATGGTGCCGGTCA+AGG | - | chr1.3:35860119-35860138 | MS.gene066417:intron | 45.0% |
| !! | AAATTTAATATATATATACA+AGG | - | chr1.3:35860315-35860334 | MS.gene066417:intron | 5.0% |
| !! | ATATATATATATATATATAG+GGG | - | chr1.3:35860594-35860613 | MS.gene066417:CDS | 5.0% |
| GCGAGCTTCCCAATGCAAAA+TGG | - | chr1.3:35861062-35861081 | MS.gene066417:CDS | 50.0% | |
| TGCAATTGATACGAGGGGTG+TGG | - | chr1.3:35859894-35859913 | MS.gene066417:intron | 50.0% | |
| TGTTACAAGCCACCCTTTGG+TGG | + | chr1.3:35860498-35860517 | None:intergenic | 50.0% | |
| ! | ATACGAGGGGTGTGGATGAT+CGG | - | chr1.3:35859902-35859921 | MS.gene066417:intron | 50.0% |
| !! | GCTGAGCTAGTTGATGATGC+AGG | - | chr1.3:35859601-35859620 | MS.gene066417:CDS | 50.0% |
| ! | TACGAGGGGTGTGGATGATC+GGG | - | chr1.3:35859903-35859922 | MS.gene066417:intron | 55.0% |
| ! | AGGGGTGTGGATGATCGGGT+GGG | - | chr1.3:35859907-35859926 | MS.gene066417:intron | 60.0% |
| ! | GAGGGGTGTGGATGATCGGG+TGG | - | chr1.3:35859906-35859925 | MS.gene066417:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 35859502 | 35861151 | 35859502 | ID=MS.gene066417 |
| chr1.3 | mRNA | 35859502 | 35861151 | 35859502 | ID=MS.gene066417.t1;Parent=MS.gene066417 |
| chr1.3 | exon | 35860435 | 35861151 | 35860435 | ID=MS.gene066417.t1.exon1;Parent=MS.gene066417.t1 |
| chr1.3 | CDS | 35860435 | 35861151 | 35860435 | ID=cds.MS.gene066417.t1;Parent=MS.gene066417.t1 |
| chr1.3 | exon | 35859502 | 35859660 | 35859502 | ID=MS.gene066417.t1.exon2;Parent=MS.gene066417.t1 |
| chr1.3 | CDS | 35859502 | 35859660 | 35859502 | ID=cds.MS.gene066417.t1;Parent=MS.gene066417.t1 |
| Gene Sequence |
| Protein sequence |
