AlfalfaGEDB | MS.gene60913

M. sativa cultivar XinJiangDaYe / MS.gene60913

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60913.t1	QDC33493.1	94.5	344	18	1	1	344	1	343	1.40E-162	582.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60913.t1	Q9MA17	59.1	381	96	7	4	344	11	371	1.7e-81	304.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60913.t1	A0A4Y5UMP1	94.5	344	18	1	1	344	1	343	9.9e-163	582.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene60913.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049373	MS.gene60913	-0.810647	1.04E-50	-1.69E-46
MS.gene049611	MS.gene60913	0.81577	7.80E-52	-1.69E-46
MS.gene050381	MS.gene60913	0.8027	4.96E-49	-1.69E-46
MS.gene050504	MS.gene60913	-0.802873	4.56E-49	-1.69E-46
MS.gene050720	MS.gene60913	0.822054	2.91E-53	-1.69E-46
MS.gene050722	MS.gene60913	0.800923	1.15E-48	-1.69E-46
MS.gene050725	MS.gene60913	0.810038	1.41E-50	-1.69E-46
MS.gene05081	MS.gene60913	-0.803757	2.99E-49	-1.69E-46
MS.gene050822	MS.gene60913	0.805532	1.28E-49	-1.69E-46
MS.gene050868	MS.gene60913	-0.820501	6.64E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60913.t1	MTR_2g062730	98.841	345	2	2	1	344	1	344	0.0	715
MS.gene60913.t1	MTR_8g024480	74.556	169	31	2	5	162	10	177	9.62e-90	276
MS.gene60913.t1	MTR_5g021710	56.148	244	97	4	5	239	3	245	5.14e-89	271
MS.gene60913.t1	MTR_4g035590	72.067	179	45	4	10	186	8	183	1.57e-88	270
MS.gene60913.t1	MTR_4g101680	48.701	308	116	8	10	292	7	297	1.03e-83	258
MS.gene60913.t1	MTR_8g076110	47.751	289	120	5	7	293	3	262	3.08e-83	255
MS.gene60913.t1	MTR_4g036030	47.284	313	128	9	10	297	7	307	3.25e-83	256
MS.gene60913.t1	MTR_5g012080	44.062	320	119	8	10	297	7	298	2.95e-79	246
MS.gene60913.t1	MTR_1g096430	41.808	354	158	8	7	334	4	335	1.48e-75	236
MS.gene60913.t1	MTR_3g109340	50.588	170	78	3	1	167	11	177	2.08e-58	192

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60913.t1	AT1G79580	54.005	387	110	12	2	344	9	371	5.16e-116	341
MS.gene60913.t1	AT1G79580	54.005	387	110	12	2	344	9	371	5.16e-116	341
MS.gene60913.t1	AT1G79580	54.005	387	110	12	2	344	9	371	5.16e-116	341
MS.gene60913.t1	AT1G79580	54.005	387	110	12	2	344	9	371	5.16e-116	341
MS.gene60913.t1	AT1G79580	54.005	387	110	12	2	344	9	371	5.16e-116	341
MS.gene60913.t1	AT4G10350	48.649	333	135	10	2	314	1	317	4.90e-93	281
MS.gene60913.t1	AT2G18060	48.052	308	137	6	2	293	1	301	1.71e-92	280
MS.gene60913.t1	AT2G18060	48.052	308	137	6	2	293	1	301	1.71e-92	280
MS.gene60913.t1	AT4G36160	49.191	309	121	8	9	293	13	309	3.87e-90	275
MS.gene60913.t1	AT4G36160	49.191	309	121	8	9	293	9	305	5.52e-90	275

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Find 81 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTAGTATTCTACAC+TGG	0.628009	2.4:-31160600	MS.gene60913:CDS
AAACTACTTGCATCACACAA+TGG	0.620814	2.4:-31159935	MS.gene60913:CDS
AAAGAAGCTCCTCATCAGTA+GGG	0.620933	2.4:+31161545	None:intergenic
AAATTTCCATTTCATTACCT+TGG	0.472448	2.4:-31159821	MS.gene60913:CDS
AACACCACCACCACCTTTGA+TGG	0.356402	2.4:-31160166	MS.gene60913:CDS
AACCACATGAGATCAACAAA+TGG	0.569176	2.4:-31160259	MS.gene60913:CDS
AAGAAATACCACTCATTCTG+TGG	0.620194	2.4:+31160750	None:intergenic
AAGATGGATGGGTAGTATGC+AGG	0.497034	2.4:-31160351	MS.gene60913:CDS
AAGGACAAGAAATACCCAAC+AGG	0.548438	2.4:-31160720	MS.gene60913:CDS
AATGCTCTCAAAATTTGTTG+AGG	0.538669	2.4:-31160054	MS.gene60913:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCTTAGTATTCTACAC+TGG	-	chr2.4:31160779-31160798	MS.gene60913:intron	30.0%
AGAAATAAAAACCACACTTG+TGG	-	chr2.4:31160884-31160903	MS.gene60913:intron	30.0%
AGCTTCTTTACTATTACTTG+AGG	-	chr2.4:31159848-31159867	MS.gene60913:CDS	30.0%
ATGGAATGGATCTTAATCTA+AGG	-	chr2.4:31161463-31161482	MS.gene60913:CDS	30.0%
ATTTGCATACCAACTTTAAG+TGG	+	chr2.4:31160019-31160038	None:intergenic	30.0%
CATTATCATCATCATCAAGA+CGG	+	chr2.4:31160850-31160869	None:intergenic	30.0%
CTAAATGTAATCACATGTGT+CGG	-	chr2.4:31160435-31160454	MS.gene60913:intron	30.0%
CTTCTTCTTCAATTTCTTGT+TGG	+	chr2.4:31161086-31161105	None:intergenic	30.0%
TATATCACACCAATTCCAAA+AGG	-	chr2.4:31160744-31160763	MS.gene60913:CDS	30.0%
TATGCATGCTGAAATATGAT+CGG	-	chr2.4:31160240-31160259	MS.gene60913:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	31159784	31161617	31159784	ID=MS.gene60913
chr2.4	mRNA	31159784	31161617	31159784	ID=MS.gene60913.t1;Parent=MS.gene60913
chr2.4	exon	31161449	31161617	31161449	ID=MS.gene60913.t1.exon1;Parent=MS.gene60913.t1
chr2.4	CDS	31161449	31161617	31161449	ID=cds.MS.gene60913.t1;Parent=MS.gene60913.t1
chr2.4	exon	31160521	31160795	31160521	ID=MS.gene60913.t1.exon2;Parent=MS.gene60913.t1
chr2.4	CDS	31160521	31160795	31160521	ID=cds.MS.gene60913.t1;Parent=MS.gene60913.t1
chr2.4	exon	31159784	31160374	31159784	ID=MS.gene60913.t1.exon3;Parent=MS.gene60913.t1
chr2.4	CDS	31159784	31160374	31159784	ID=cds.MS.gene60913.t1;Parent=MS.gene60913.t1

Gene Sequence

>MS.gene60913

ATGATGCAAGGTAGTGGAGAATTAACAGTTCCTCCAGGGTTTAGGTTCCACCCTACTGATGAGGAGCTTCTTTACTATTACTTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTTATCAGAGAAGTTGATCTCAACAGACTTGAGCCTTGGGATCTCAAAGGTACACACACTACATATTCATAAATCTTTGTCTTATATCTTATTCTTCTAAGCGTTCTCATAACCACTTAAAGTTGGTATGCAAATATACACTTTATATAATATGCTTATATTCAAATAAAGTCATGCATAATTTCTTTGTTTCATACTATATATAGGATTTTATGATCATAAGAAAAATAAAATAAAAAATAGAAGAGTTTATTATATATGAACTAATACTATGGCATCCAATCATATCTTACTTATGCGCCAAATATATTGCTTCTCACAATATTTCAATAATGATATGCATGCTGAAATATGATCGGATGATACTACAAAACTATTTTACACCGGTGGTGCATATCCATTAATACAAACTAAAATCACATGTTAACTTCGTCTACTTGTGTGTGTAATTGCATATGAAACACTTGCACTAGTAACACCGGATCAACCCTGATACGTTGATATCCGCAATGATTTGAAAAATATAGGTAACTAAATGTAATCACATGTGTCGGTTTTGTCTCGGCGTCGGACACCAGACATGTCTTCAATCTTAAGTGTCTATGCTACATATTGAGTTTTCTAAGATGAACTAATTAAACATCTTGTTCATCTCTTAATTTTGTATTAAATTGAATAGTTTTGTGTGTGCACTTGTTGCAGATAAGTGTAGGATTGGATCAGGGCCACAGAATGAGTGGTATTTCTTCAGTCACAAGGACAAGAAATACCCAACAGGAACAAGAACAAATAGAGCAACTACAGCTGGGTTTTGGAAAGCAACAGGAAGAGACAAAGCCATATATCACACCAATTCCAAAAGGATTGGAATGAGGAAAACCTTAGTATTCTACACTGGACGTGCTCCTCATGGCCACAAAACTGACTGGATCATGCATGAGTACCGTCTTGATGATGATGATAATGCAGAAGTTCAGGTCAGAAATAAAAACCACACTTGTGGTGCATGTCACATTTTCTCTTCTTTTTTTTGTATATAGTTTTAATATGTATCAAATATATGTAATCTATCAAATGTTACTAGCCAAGTAATTAATAAGAACCTCATGAATTTGTTTTTCAGGAAGATGGATGGGTAGTATGCAGGGTATTCAAAAAGAAAAACACAAACAGAAGCTACCAACAAGAAATTGAAGAAGAAGATCATCACATGATTAACCACATGAGATCAACAAATGGTCCAAACCATTTTCTAGAACCAAAACATCATCACCATATGCAACAACTAGGACTATATGATTACAACAATAACACCACCACCACCTTTGATGGTACAATTCACTTGCCACAATTGTTCAGTCCAGAATCAGCTATAGCAGTACCACCAACTTCCTTCCATAACTCATCAATGGACATCCTTGAATGCTCTCAAAATTTGTTGAGGCTCACAACAACAAATACTAGCTCAGGACTTAATCTCATGCAGCAACAACAACAAGGAGAAAGGTTGATCAGTGGTGGTGATTGGTCATTCTTGGATAAACTACTTGCATCACACAATGGAATGGATCTTAATCTAAGGAACAAATTATGTAACACTCCTAATAATCACCAGGCTGCACCTTCTACTGCTGTTGGAACTTCTTCAGCTCAGAAATTTCCATTTCATTACCTTGGTTGTGAGTCTCATGATATTATGAAATTTTCAAAGTAA

Protein sequence

>MS.gene60913.t1

MMQGSGELTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNRLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGHKTDWIMHEYRLDDDDNAEVQEDGWVVCRVFKKKNTNRSYQQEIEEEDHHMINHMRSTNGPNHFLEPKHHHHMQQLGLYDYNNNTTTTFDGTIHLPQLFSPESAIAVPPTSFHNSSMDILECSQNLLRLTTTNTSSGLNLMQQQQQGERLISGGDWSFLDKLLASHNGMDLNLRNKLCNTPNNHQAAPSTAVGTSSAQKFPFHYLGCESHDIMKFSK