AlfalfaGEDB | MS.gene81370

M. sativa cultivar XinJiangDaYe / MS.gene81370

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81370.t1	AET00701.1	45.6	562	190	12	1	494	1	514	3.40E-43	186.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81370.t1	G7K4I5	45.6	562	190	12	1	494	1	514	2.4e-43	186.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene81370	0.840492	8.42E-58	-1.69E-46
MS.gene049159	MS.gene81370	0.841588	4.34E-58	-1.69E-46
MS.gene049254	MS.gene81370	0.802333	5.90E-49	-1.69E-46
MS.gene049435	MS.gene81370	0.829046	6.41E-55	-1.69E-46
MS.gene049501	MS.gene81370	0.840558	8.09E-58	-1.69E-46
MS.gene049585	MS.gene81370	0.808421	3.12E-50	-1.69E-46
MS.gene049647	MS.gene81370	0.821317	4.31E-53	-1.69E-46
MS.gene049821	MS.gene81370	0.808578	2.89E-50	-1.69E-46
MS.gene049850	MS.gene81370	0.856478	3.13E-62	-1.69E-46
MS.gene050137	MS.gene81370	0.802331	5.90E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81370.t1	MTR_5g094950	58.730	441	126	9	1	429	1	397	1.12e-133	399
MS.gene81370.t1	MTR_5g094970	59.816	326	94	6	78	396	10	305	1.63e-105	320
MS.gene81370.t1	MTR_5g095050	48.182	440	143	10	1	398	1	397	1.52e-100	314
MS.gene81370.t1	MTR_5g094960	37.500	536	193	15	1	498	1	432	9.48e-80	258
MS.gene81370.t1	MTR_5g094920	37.162	592	256	17	1	531	1	537	7.71e-76	249
MS.gene81370.t1	MTR_5g094910	41.226	359	157	13	149	495	30	346	1.36e-58	199
MS.gene81370.t1	MTR_5g094850	33.451	565	189	16	3	496	1	449	3.98e-58	201
MS.gene81370.t1	MTR_5g094850	32.143	588	189	16	3	496	1	472	3.85e-54	191
MS.gene81370.t1	MTR_5g094990	43.042	309	128	7	236	498	127	433	6.97e-51	181
MS.gene81370.t1	MTR_5g077500	53.052	213	63	3	186	398	74	249	4.13e-41	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 95 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAATGAGGATTTGGA+GGG	0.663728	5.2:-80049821	MS.gene81370:CDS
AAACAAGGTTGGTGTATTGG+AGG	0.530901	5.2:-80049426	MS.gene81370:CDS
AAACACGTTGAACAAGATCA+TGG	0.537446	5.2:+80050200	None:intergenic
AAAGAATGCAGAGTTAGAGC+AGG	0.521553	5.2:-80049684	MS.gene81370:CDS
AACAGAGGAACTAGAAATAG+AGG	0.480923	5.2:+80047134	None:intergenic
AAGATACGATGAATCAACAG+AGG	0.711060	5.2:+80047119	None:intergenic
AAGGAGAAAATGGTGGAAGA+TGG	0.497085	5.2:-80049563	MS.gene81370:CDS
AAGGATAAAATGGTGGAAGA+TGG	0.511454	5.2:-80049782	MS.gene81370:CDS
AATAGAGGTTTCACTGTTGT+CGG	0.446667	5.2:+80047149	None:intergenic
AATGCATTTGATGTGCTAAA+AGG	0.364291	5.2:-80049539	MS.gene81370:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACATTGAGGAGAAGT+CGG	-	chr5.2:80048294-80048313	MS.gene81370:intron	30.0%
AAAAACAAAGAGTGATGAGT+TGG	-	chr5.2:80047805-80047824	MS.gene81370:intron	30.0%
AAAATGAATGAGGATTTGGA+GGG	-	chr5.2:80047590-80047609	MS.gene81370:intron	30.0%
AAATGTTTGGTTAGATTGCT+AGG	-	chr5.2:80048440-80048459	MS.gene81370:intron	30.0%
AATGCATTTGATGTGCTAAA+AGG	-	chr5.2:80047872-80047891	MS.gene81370:intron	30.0%
AATTATCCCATATCAAGTGT+TGG	+	chr5.2:80049501-80049520	None:intergenic	30.0%
AATTTCAAGGTTACATGTAG+AGG	-	chr5.2:80047349-80047368	MS.gene81370:CDS	30.0%
GAAATCTATGATAAGGTTGA+AGG	-	chr5.2:80047254-80047273	MS.gene81370:CDS	30.0%
GAACGAAAACAGAAAATTAG+TGG	-	chr5.2:80048099-80048118	MS.gene81370:intron	30.0%
GAGATCAAATTTGTCAGAAA+TGG	-	chr5.2:80047387-80047406	MS.gene81370:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	80047071	80050362	80047071	ID=MS.gene81370
chr5.2	mRNA	80047071	80050362	80047071	ID=MS.gene81370.t1;Parent=MS.gene81370
chr5.2	exon	80049078	80050362	80049078	ID=MS.gene81370.t1.exon1;Parent=MS.gene81370.t1
chr5.2	CDS	80049078	80050362	80049078	ID=cds.MS.gene81370.t1;Parent=MS.gene81370.t1
chr5.2	exon	80047071	80047381	80047071	ID=MS.gene81370.t1.exon2;Parent=MS.gene81370.t1
chr5.2	CDS	80047071	80047381	80047071	ID=cds.MS.gene81370.t1;Parent=MS.gene81370.t1

Gene Sequence

>MS.gene81370

ATGAATTTTGAACCTAAAATCGAACCTAACTCACCTTCCACCGACACTATAGTTCTTGATGCTGATGATGTTGGAGCAGATCCGGTGGTGGTGGAGGAGGAGGAAACAACTCTTCTTCATGACTTACAAGGAATGACTATCCATGATCTTGTTCAACGTGTTTTGCTTGGTGCTTGTCGTGCTGAAATCTATGATAAGGTTGAAGGTGTTTTGGTGACAAGGGATTTGGATCTCAAACAACAGATTCAACTCCTTCAACATGAGCTTCAAAATGAGAAAATTTCAAGGTTACATGTAGAGGAAGAGCTTAACAAAAGAGATCAAATTTGTCAGAAATGGACCAAATTGCAAGAAACTCATCAAGCTCTTTTGAAAGATTCCAAGAAGGCTCAAAAAGATCTTTTGGAAGCTAATGGAAACATTAATCTTCTAAGAAAGAAGAATGTTAAGTTGATGTGTGAGGTTAATAAGCTGACACGAGAACAAGTAGAGGCTGGGAAGGAATTTAAAGTGCTTAGCAAAATGAATGAGGATTTGGAGGGTGAGATTAACAAGTTGAAGGATAAAATGGTGGAAGATGGAAATGTAGTTCAAGAGTTGGAGAAGTTGAAGGAAAAAAGGGTTGAAGATGGAAATGCACTTGATGTGGAGAGAAGAAAGAATGCAGAGTTAGAGCAGGAGGTTTTGAAGCTGAAGGGAAAAAGGGTGGAAGATGGCAATGCAATTGATATGCTAAAAACAAAGAGTGATGAGTTGGAGTGTGAGGTTGAGAAATTGAAGGAGAAAATGGTGGAAGATGGAAATGCATTTGATGTGCTAAAAGGAAAGAAGTGTGAGCTAGAATCTAAAGTTTTGGAGTTGGAAAAGTTGAAGGAAAAGTGGCTAGATGATAGTAATTCTCTCCATGACCTTCGAAACAAGGTTGGTGTATTGGAGGATGAAAAGAATGCTTTGGCTGGAATTGAGATTAAAAATGGCGAATTGAAGGAAACAGTGAACACAAATTTGGCAATTATAAGCAAGCTGAGGAACGAAAACAGAAAATTAGTGGATGAGAAACGTAAGGGTGAGATCTTACTCGATTCTTTGAACACAAAGTTCAGAGCATTAGATGAAAGAGTTGCTAGGTTGGAGGACGATTTTGACCTTTCTGTGAGTGTAGATGCCTATGGTGGTGGAAGCAATGAGGGGGATGGAGAGGATGTTGGTGGCAATGAGGTTGGAAAAAACATTGAGGAGAAGTCGGCTCCTTTGCAAAGAAATGAAGATGGCCATCAATTTCACGGTATGGAAATTATACATGCATTTATTTTTCCTATAAAGATATGCATTTTCGAGTGCTACTTTCTGAAGTTAAGTGTGATCGGATAAATGTTTGGTTAGATTGCTAGGTAGTTTTACCTGAAACCGTGTTTTTTCTTGTTTTATTTAAGCAATGAGTAGGAACTATTTTTATAAATTCTTTGAACTGGTGAAGGTACTAGCGATTGAACCATACCACATTAAAATACCTATAGCTAGTAATCATAATTTGGAATTAGAGTACGTCATTACTAAGATAAACTTGACTAGCCCAGTGATAACTAGTCATCATATTTGGAATTAGAGTACGTCATAACTAAGATAAACTCGATTAGCCCAGTGATAACTAGTCATCATATTTGGAATTGGAGTACGTCATAACTAAGATAAACTCCATTAGCCCCGTGATATTATGGTCCTCTCTAGATGGAAAGTGAATTGTGACTTTTGAAGCTTGTTCCTTCTTCTCTTGGGTCCATCTTTATTCCACGTTACATGGCCAAAAGAAAGCTATTGGCTCTCTTTTAGCTGAATTTGATTCATATGGAAGTTTAAGGAGCATTGAGAGTGACAGGAACTGTAGAACCTCAAACAAATCTTAGTTCTGGGGAGGTTTTTCCTTCACCATAATGAATTGATAAGATATGTATTGGCTCAGTTGCAGAACAGACCTGCTGTGGAAACTACTTAGGAAGTTAAGTTCATGAGGAGAAGCCCAAATTTCAGTGTTAAGGACAGAACTATGCTTCAGGAACTGGAAATGTCAGTAAACTAGAATAGAGAGATGATCCTGTAGAATAGATTGTAGACCAATTGTGTTTTGATCGCGGGTCAAGGGTTGAATGGTATACGCAAGAAGGCCCAAGAAAGTGGTTGAGATGACAGGGCCTATTTGGAGTTAGTTATTCCGTAGCGTCCAGAAGGAATAGTTTAATTTGAATGGTTATGTAGGGGAAGTTAGTTAGAAGCTTGTCTCTGGTAAAGTATTTGGATATGGTATATAGTAGCTCTTTTCTATTTCTCTTGGTTTTTTCTTTCTTTATACCATTTATAGTTTATTCTTTGAAGCTTTAGAATACAATAGAATGTCCTTCTGTTTTGCACTTCCTAATGTATAGATATAATCCAACACTTGATATGGGATAATTGAGTGATTCTAAACCTGCATGTATGGTTCATATCAAATGTTCCTTCAGACAGTTTTTTGGAACATTTTCTGCTGATGAAAAGTATTGGAAGGTATACACTGGAAGGCCCAGTGAAACAATTGAGATGGCAAGGTGTAGCGGATGTACGTTATTTATTCAGTAGTTTCCAGAAGGCATAATGAAATTATAATAGCTATTTAGGTTAGGCAGAGAGGAGAGGGTGTGAATTGAGGTTTTCTTTTGATATCTTCTCTTTTATATTTTGTTATCGTTTCTGTTATTTCTTCCTCATTCCTTATCGAAGTTTTCTTTCCAGAAAACAATAATGTAACAAACAAAAGTAGGCAAAAAAACACATTTTGTTTCTCCTAGGTAAACATTATTACAGGATGCTTGATGTATACATTATCTGAAAATCTGAAATTGATGAGGAATAAAGAATATACCATTCCTTATTTTAAGTTTTTGCTCGAGTGTTATCATAGTTTGCAAATCTTATGTATAATTTTAGCATCTCTCATTTTGTGCCAGCTGGTGGAAGTTTGAATATGCAAAAGGATGTTGAGATCATAAATCTTGACGACGAAGAGGATGATCTGTGTATGTCTCAAGGAGAAAAGAATGTCATTTCTGGAATTTGCGTGAAGGATGAGCATCCAACTCCAAGTTCATCAATAGCACTTCAACAAGAAACCAAGTTTGCAAATGTTGCTGACACGATCAAGAGAAAACATTTTCTCCCCGACAACAGTGAAACCTCTATTTCTAGTTCCTCTGTTGATTCATCGTATCTTGATACTATAATATCTGTGGTATCACAACCAAAAAAGACTAAAATGTAG

Protein sequence

>MS.gene81370.t1

MNFEPKIEPNSPSTDTIVLDADDVGADPVVVEEEETTLLHDLQGMTIHDLVQRVLLGACRAEIYDKVEGVLVTRDLDLKQQIQLLQHELQNEKISRLHVEEELNKRDQICQKWTKLQETHQALLKDSKKAQKDLLEANGNINLLRKKNVKLMCEVNKLTREQVEAGKEFKVLSKMNEDLEGEINKLKDKMVEDGNVVQELEKLKEKRVEDGNALDVERRKNAELEQEVLKLKGKRVEDGNAIDMLKTKSDELECEVEKLKEKMVEDGNAFDVLKGKKCELESKVLELEKLKEKWLDDSNSLHDLRNKVGVLEDEKNALAGIEIKNGELKETVNTNLAIISKLRNENRKLVDEKRKGEILLDSLNTKFRALDERVARLEDDFDLSVSVDAYGGGSNEGDGEDVGGNEVGKNIEEKSAPLQRNEDGHQFHAGGSLNMQKDVEIINLDDEEDDLCMSQGEKNVISGICVKDEHPTPSSSIALQQETKFANVADTIKRKHFLPDNSETSISSSSVDSSYLDTIISVVSQPKKTKM