Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40518.t1 | XP_003610611.2 | 89.5 | 392 | 29 | 2 | 1 | 380 | 38 | 429 | 3.80E-182 | 647.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40518.t1 | G7JZT3 | 89.5 | 392 | 29 | 2 | 1 | 380 | 38 | 429 | 2.8e-182 | 647.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene40518 | 0.854356 | 1.30E-61 | -1.69E-46 |
| MS.gene049159 | MS.gene40518 | 0.832301 | 1.02E-55 | -1.69E-46 |
| MS.gene049254 | MS.gene40518 | 0.836917 | 7.06E-57 | -1.69E-46 |
| MS.gene049283 | MS.gene40518 | 0.800112 | 1.68E-48 | -1.69E-46 |
| MS.gene049368 | MS.gene40518 | 0.830441 | 2.93E-55 | -1.69E-46 |
| MS.gene049435 | MS.gene40518 | 0.805655 | 1.20E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene40518 | 0.816978 | 4.19E-52 | -1.69E-46 |
| MS.gene049647 | MS.gene40518 | 0.80171 | 7.92E-49 | -1.69E-46 |
| MS.gene049801 | MS.gene40518 | 0.804737 | 1.87E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene40518 | 0.829001 | 6.57E-55 | -1.69E-46 |
| MS.gene050084 | MS.gene40518 | 0.805525 | 1.28E-49 | -1.69E-46 |
| MS.gene050085 | MS.gene40518 | 0.813941 | 1.98E-51 | -1.69E-46 |
| MS.gene050105 | MS.gene40518 | 0.80518 | 1.51E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene40518 | 0.847597 | 1.05E-59 | -1.69E-46 |
| MS.gene050941 | MS.gene40518 | 0.813514 | 2.46E-51 | -1.69E-46 |
| MS.gene051066 | MS.gene40518 | 0.808161 | 3.55E-50 | -1.69E-46 |
| MS.gene051102 | MS.gene40518 | 0.802539 | 5.35E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene40518 | 0.814561 | 1.45E-51 | -1.69E-46 |
| MS.gene051209 | MS.gene40518 | 0.813277 | 2.78E-51 | -1.69E-46 |
| MS.gene051210 | MS.gene40518 | 0.826656 | 2.41E-54 | -1.69E-46 |
| MS.gene051332 | MS.gene40518 | 0.810572 | 1.08E-50 | -1.69E-46 |
| MS.gene051490 | MS.gene40518 | 0.801803 | 7.58E-49 | -1.69E-46 |
| MS.gene051543 | MS.gene40518 | 0.810072 | 1.38E-50 | -1.69E-46 |
| MS.gene051676 | MS.gene40518 | 0.801063 | 1.07E-48 | -1.69E-46 |
| MS.gene051744 | MS.gene40518 | 0.811764 | 5.95E-51 | -1.69E-46 |
| MS.gene051800 | MS.gene40518 | 0.813625 | 2.33E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene40518 | 0.809809 | 1.57E-50 | -1.69E-46 |
| MS.gene052108 | MS.gene40518 | 0.806944 | 6.43E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene40518 | 0.815311 | 9.87E-52 | -1.69E-46 |
| MS.gene052534 | MS.gene40518 | 0.802111 | 6.55E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene40518 | 0.841912 | 3.56E-58 | -1.69E-46 |
| MS.gene052674 | MS.gene40518 | 0.815274 | 1.01E-51 | -1.69E-46 |
| MS.gene052675 | MS.gene40518 | 0.817983 | 2.48E-52 | -1.69E-46 |
| MS.gene052677 | MS.gene40518 | 0.823786 | 1.15E-53 | -1.69E-46 |
| MS.gene052775 | MS.gene40518 | 0.816118 | 6.52E-52 | -1.69E-46 |
| MS.gene052776 | MS.gene40518 | 0.816741 | 4.73E-52 | -1.69E-46 |
| MS.gene052932 | MS.gene40518 | 0.807776 | 4.29E-50 | -1.69E-46 |
| MS.gene052954 | MS.gene40518 | 0.813382 | 2.63E-51 | -1.69E-46 |
| MS.gene052994 | MS.gene40518 | 0.811602 | 6.45E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene40518 | 0.800422 | 1.45E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene40518 | 0.821099 | 4.83E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene40518 | 0.81536 | 9.62E-52 | -1.69E-46 |
| MS.gene05364 | MS.gene40518 | 0.801182 | 1.02E-48 | -1.69E-46 |
| MS.gene054139 | MS.gene40518 | 0.804011 | 2.65E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene40518 | 0.856463 | 3.16E-62 | -1.69E-46 |
| MS.gene054576 | MS.gene40518 | 0.817285 | 3.57E-52 | -1.69E-46 |
| MS.gene05458 | MS.gene40518 | 0.801808 | 7.56E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene40518 | 0.807381 | 5.20E-50 | -1.69E-46 |
| MS.gene054657 | MS.gene40518 | 0.814935 | 1.20E-51 | -1.69E-46 |
| MS.gene054875 | MS.gene40518 | 0.81334 | 2.69E-51 | -1.69E-46 |
| MS.gene054943 | MS.gene40518 | 0.810689 | 1.02E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene40518 | 0.806962 | 6.37E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene40518 | 0.81038 | 1.19E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene40518 | 0.803559 | 3.29E-49 | -1.69E-46 |
| MS.gene055313 | MS.gene40518 | 0.825244 | 5.21E-54 | -1.69E-46 |
| MS.gene055513 | MS.gene40518 | 0.817002 | 4.13E-52 | -1.69E-46 |
| MS.gene055623 | MS.gene40518 | 0.841578 | 4.36E-58 | -1.69E-46 |
| MS.gene055701 | MS.gene40518 | 0.80589 | 1.07E-49 | -1.69E-46 |
| MS.gene055841 | MS.gene40518 | 0.803462 | 3.45E-49 | -1.69E-46 |
| MS.gene055864 | MS.gene40518 | 0.833173 | 6.21E-56 | -1.69E-46 |
| MS.gene055926 | MS.gene40518 | 0.831607 | 1.52E-55 | -1.69E-46 |
| MS.gene056045 | MS.gene40518 | 0.848042 | 7.88E-60 | -1.69E-46 |
| MS.gene05604 | MS.gene40518 | 0.809168 | 2.16E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene40518 | 0.815568 | 8.65E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene40518 | 0.827931 | 1.19E-54 | -1.69E-46 |
| MS.gene056308 | MS.gene40518 | 0.810073 | 1.38E-50 | -1.69E-46 |
| MS.gene056480 | MS.gene40518 | 0.825299 | 5.06E-54 | -1.69E-46 |
| MS.gene056507 | MS.gene40518 | 0.816173 | 6.34E-52 | -1.69E-46 |
| MS.gene05659 | MS.gene40518 | 0.812716 | 3.69E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene40518 | 0.802249 | 6.14E-49 | -1.69E-46 |
| MS.gene056776 | MS.gene40518 | 0.810917 | 9.08E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene40518 | 0.810641 | 1.04E-50 | -1.69E-46 |
| MS.gene056973 | MS.gene40518 | 0.811243 | 7.72E-51 | -1.69E-46 |
| MS.gene057034 | MS.gene40518 | 0.824613 | 7.34E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene40518 | 0.838193 | 3.33E-57 | -1.69E-46 |
| MS.gene057360 | MS.gene40518 | 0.813098 | 3.04E-51 | -1.69E-46 |
| MS.gene057371 | MS.gene40518 | 0.801024 | 1.09E-48 | -1.69E-46 |
| MS.gene057598 | MS.gene40518 | 0.822129 | 2.79E-53 | -1.69E-46 |
| MS.gene057600 | MS.gene40518 | 0.803686 | 3.10E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene40518 | 0.817657 | 2.94E-52 | -1.69E-46 |
| MS.gene057869 | MS.gene40518 | 0.832971 | 6.97E-56 | -1.69E-46 |
| MS.gene057915 | MS.gene40518 | 0.819848 | 9.36E-53 | -1.69E-46 |
| MS.gene058010 | MS.gene40518 | 0.839012 | 2.04E-57 | -1.69E-46 |
| MS.gene058081 | MS.gene40518 | 0.829139 | 6.08E-55 | -1.69E-46 |
| MS.gene058289 | MS.gene40518 | 0.822038 | 2.93E-53 | -1.69E-46 |
| MS.gene058292 | MS.gene40518 | 0.843571 | 1.29E-58 | -1.69E-46 |
| MS.gene058427 | MS.gene40518 | 0.818611 | 1.79E-52 | -1.69E-46 |
| MS.gene058429 | MS.gene40518 | 0.802251 | 6.13E-49 | -1.69E-46 |
| MS.gene05847 | MS.gene40518 | 0.81192 | 5.50E-51 | -1.69E-46 |
| MS.gene058595 | MS.gene40518 | 0.824877 | 6.36E-54 | -1.69E-46 |
| MS.gene058919 | MS.gene40518 | 0.816712 | 4.80E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene40518 | 0.835125 | 2.01E-56 | -1.69E-46 |
| MS.gene05897 | MS.gene40518 | 0.823414 | 1.40E-53 | -1.69E-46 |
| MS.gene059331 | MS.gene40518 | 0.806871 | 6.66E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene40518 | 0.858383 | 8.56E-63 | -1.69E-46 |
| MS.gene059725 | MS.gene40518 | 0.820867 | 5.47E-53 | -1.69E-46 |
| MS.gene05973 | MS.gene40518 | 0.802393 | 5.73E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene40518 | 0.817719 | 2.85E-52 | -1.69E-46 |
| MS.gene060191 | MS.gene40518 | 0.81621 | 6.22E-52 | -1.69E-46 |
| MS.gene060296 | MS.gene40518 | 0.829349 | 5.41E-55 | -1.69E-46 |
| MS.gene060310 | MS.gene40518 | 0.806385 | 8.44E-50 | -1.69E-46 |
| MS.gene060365 | MS.gene40518 | 0.80796 | 3.92E-50 | -1.69E-46 |
| MS.gene060435 | MS.gene40518 | 0.80272 | 4.91E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene40518 | 0.841109 | 5.80E-58 | -1.69E-46 |
| MS.gene060637 | MS.gene40518 | 0.80487 | 1.76E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene40518 | 0.805991 | 1.02E-49 | -1.69E-46 |
| MS.gene060685 | MS.gene40518 | 0.809948 | 1.47E-50 | -1.69E-46 |
| MS.gene060777 | MS.gene40518 | 0.830411 | 2.98E-55 | -1.69E-46 |
| MS.gene060850 | MS.gene40518 | 0.802822 | 4.67E-49 | -1.69E-46 |
| MS.gene060852 | MS.gene40518 | 0.800537 | 1.38E-48 | -1.69E-46 |
| MS.gene060932 | MS.gene40518 | 0.806026 | 1.00E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene40518 | 0.851848 | 6.79E-61 | -1.69E-46 |
| MS.gene060935 | MS.gene40518 | 0.834592 | 2.74E-56 | -1.69E-46 |
| MS.gene060937 | MS.gene40518 | 0.838507 | 2.76E-57 | -1.69E-46 |
| MS.gene060998 | MS.gene40518 | 0.818483 | 1.91E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene40518 | 0.80641 | 8.34E-50 | -1.69E-46 |
| MS.gene06121 | MS.gene40518 | 0.812338 | 4.46E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40518.t1 | MTR_5g005010 | 89.541 | 392 | 29 | 2 | 1 | 380 | 38 | 429 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40518.t1 | AT2G14680 | 50.255 | 392 | 183 | 3 | 1 | 380 | 34 | 425 | 2.53e-112 | 335 |
| MS.gene40518.t1 | AT2G14680 | 50.255 | 392 | 183 | 3 | 1 | 380 | 34 | 425 | 3.38e-110 | 336 |
| MS.gene40518.t1 | AT2G14680 | 50.255 | 392 | 183 | 3 | 1 | 380 | 34 | 425 | 3.38e-110 | 336 |
| MS.gene40518.t1 | AT2G14680 | 50.255 | 392 | 183 | 3 | 1 | 380 | 34 | 425 | 3.70e-110 | 334 |
| MS.gene40518.t1 | AT2G14680 | 50.255 | 392 | 183 | 3 | 1 | 380 | 34 | 425 | 3.70e-110 | 334 |
| MS.gene40518.t1 | AT2G14680 | 50.255 | 392 | 183 | 3 | 1 | 380 | 34 | 425 | 6.77e-110 | 336 |
| MS.gene40518.t1 | AT2G14680 | 50.255 | 392 | 183 | 3 | 1 | 380 | 34 | 425 | 8.14e-110 | 334 |
| MS.gene40518.t1 | AT2G14680 | 45.105 | 286 | 148 | 2 | 104 | 380 | 2 | 287 | 5.46e-66 | 217 |
Find 58 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTATCGTCACATTCTTTC+TGG | 0.151805 | 5.4:+500713 | None:intergenic |
| TTCATCAATCACATTGATTA+TGG | 0.178551 | 5.4:+499696 | None:intergenic |
| TCTCTTAGATGGACCAAATT+TGG | 0.191395 | 5.4:+499643 | None:intergenic |
| CTCTTTCTTCGTCTCTTAGA+TGG | 0.229424 | 5.4:+499632 | None:intergenic |
| GAAGAAGAGAATCAATTTAA+TGG | 0.236342 | 5.4:-500197 | MS.gene40518:CDS |
| TGAGAATATTGAGCCAAATT+TGG | 0.288586 | 5.4:-499656 | MS.gene40518:CDS |
| TGTTAAATGTACATGCCTTT+TGG | 0.315765 | 5.4:-500683 | MS.gene40518:CDS |
| ACTTCAAAAGAACTTGTTAC+AGG | 0.339806 | 5.4:-498540 | None:intergenic |
| GCAAGAAGAAATACATCTAT+TGG | 0.342788 | 5.4:-498603 | MS.gene40518:CDS |
| AAATCTTACAATGTATTTAG+AGG | 0.353616 | 5.4:+500621 | None:intergenic |
| CGTTACTCCTTACAGAATAC+TGG | 0.364686 | 5.4:-498875 | MS.gene40518:intron |
| ATTGATTATGGATTTAATAG+TGG | 0.381058 | 5.4:+499708 | None:intergenic |
| TGGATGACTCTGAGGAGTTA+TGG | 0.381091 | 5.4:-500663 | MS.gene40518:CDS |
| TCTACAAGACCAACTTTCTC+AGG | 0.404211 | 5.4:-503185 | MS.gene40518:CDS |
| GTTCTTCAGTCTTTATTTGA+AGG | 0.406546 | 5.4:+498561 | None:intergenic |
| ACGAATGCATTCTCAAAGAT+TGG | 0.422954 | 5.4:-503266 | MS.gene40518:CDS |
| AGCAATGGCATTGCATGAAA+AGG | 0.433720 | 5.4:-498798 | MS.gene40518:intron |
| GGTATCGTCACATTCTTTCT+GGG | 0.435822 | 5.4:+500714 | None:intergenic |
| GAATACTGGTCTTGTCTCAT+TGG | 0.436292 | 5.4:-498861 | MS.gene40518:CDS |
| ACTGTCTTCAAAGTAAACTT+AGG | 0.442891 | 5.4:-500357 | MS.gene40518:CDS |
| AGCTACTGCGTTTGCTGAAA+GGG | 0.447316 | 5.4:-503065 | MS.gene40518:CDS |
| TTCGATATTCTTTGAATGCT+CGG | 0.449192 | 5.4:+503123 | None:intergenic |
| AAATACATGGCTTCCTCAAA+AGG | 0.453150 | 5.4:-502909 | MS.gene40518:intron |
| GAGTGCATTAGAAGAGCAGC+TGG | 0.463535 | 5.4:-500401 | MS.gene40518:CDS |
| TTATGACTTTACTTCGTGAT+GGG | 0.473550 | 5.4:-499735 | MS.gene40518:CDS |
| TCAAACCCTTCAAAATAAGT+TGG | 0.474280 | 5.4:-503233 | MS.gene40518:CDS |
| GAAAGAGAAGAGAATGAATG+TGG | 0.474461 | 5.4:-499616 | MS.gene40518:CDS |
| TAAAACTGTTTCACAGTCCA+AGG | 0.482871 | 5.4:-499569 | MS.gene40518:intron |
| TGTACATTTAACATCCCAAC+TGG | 0.489928 | 5.4:+500693 | None:intergenic |
| ATGTGATTGATGAAAGAGTC+AGG | 0.492265 | 5.4:-499687 | MS.gene40518:CDS |
| ATTATGACTTTACTTCGTGA+TGG | 0.492351 | 5.4:-499736 | MS.gene40518:CDS |
| TTCTGTAAGCCTGAGAAAGT+TGG | 0.497201 | 5.4:+503176 | None:intergenic |
| ATGAACAAAGTGATTGAGAA+TGG | 0.505576 | 5.4:-499802 | MS.gene40518:CDS |
| TTCTTCAGTCTTTATTTGAA+GGG | 0.514902 | 5.4:+498562 | None:intergenic |
| AAAGAGAAGAGAATGAATGT+GGG | 0.518802 | 5.4:-499615 | MS.gene40518:CDS |
| TAGCTACTGCGTTTGCTGAA+AGG | 0.528244 | 5.4:-503066 | MS.gene40518:CDS |
| GCATTCTCAAAGATTGGAGC+AGG | 0.532206 | 5.4:-503260 | MS.gene40518:CDS |
| ACGCAGTAGCTACACAGCCC+TGG | 0.545060 | 5.4:+503077 | None:intergenic |
| AGAATGTGACGATACCAGTT+GGG | 0.552570 | 5.4:-500707 | MS.gene40518:CDS |
| CTGTCTTCAAAGTAAACTTA+GGG | 0.555011 | 5.4:-500356 | MS.gene40518:CDS |
| CTCAGATTGTTGTAAGCAGA+AGG | 0.556195 | 5.4:-502759 | MS.gene40518:CDS |
| AAGAATGTGACGATACCAGT+TGG | 0.572783 | 5.4:-500708 | MS.gene40518:CDS |
| ACTCCTCAGAGTCATCCAAA+AGG | 0.573589 | 5.4:+500668 | None:intergenic |
| CAGCTATGTATGCAACAAGC+TGG | 0.576538 | 5.4:-503313 | None:intergenic |
| TATGACTTTACTTCGTGATG+GGG | 0.578429 | 5.4:-499734 | MS.gene40518:CDS |
| TCATTGGCAGTAAAAGCTGA+TGG | 0.579584 | 5.4:-498845 | MS.gene40518:CDS |
| AAAAGCCAAGGAAAAGGAGG+AGG | 0.585798 | 5.4:-502944 | MS.gene40518:CDS |
| GTAGCGACACTAAGATAAGC+AGG | 0.586312 | 5.4:+503289 | None:intergenic |
| AAGGGATCATGCAATAATTG+AGG | 0.586653 | 5.4:-503047 | MS.gene40518:intron |
| TCTTACAATGTATTTAGAGG+TGG | 0.588977 | 5.4:+500624 | None:intergenic |
| TAGATTAAGAGTTTCTCTTG+TGG | 0.593045 | 5.4:+503204 | None:intergenic |
| CTTCTGCTTACAACAATCTG+AGG | 0.600713 | 5.4:+502760 | None:intergenic |
| AAGAGAAGAGAATGAATGTG+GGG | 0.621694 | 5.4:-499614 | MS.gene40518:CDS |
| GCAGTAAAAGCTGATGGACA+AGG | 0.622626 | 5.4:-498839 | MS.gene40518:CDS |
| GCGATGTCACAACAAATACA+TGG | 0.634762 | 5.4:-502922 | MS.gene40518:CDS |
| GGACAAAGTAAACAATTCTG+TGG | 0.642709 | 5.4:-500380 | MS.gene40518:CDS |
| TCTTCAAAGTAAACTTAGGG+TGG | 0.656435 | 5.4:-500353 | MS.gene40518:intron |
| TGATTGATGAAAGAGTCAGG+AGG | 0.830978 | 5.4:-499684 | MS.gene40518:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAAGTATAAAGAAAA+AGG | + | chr5.4:501056-501075 | None:intergenic | 10.0% |
| !! | TATTATTATTATGAATTTAC+AGG | - | chr5.4:501075-501094 | MS.gene40518:intron | 10.0% |
| !! | ATTAAAGTGAAAATGAAAAT+AGG | + | chr5.4:499471-499490 | None:intergenic | 15.0% |
| !! | ATTGAGAATTGAAAATATTA+TGG | - | chr5.4:502489-502508 | MS.gene40518:intron | 15.0% |
| !! | GATTAAACTATTGAAAAATA+AGG | + | chr5.4:501577-501596 | None:intergenic | 15.0% |
| !!! | AATAAATAAGGGTATAATAA+AGG | - | chr5.4:501854-501873 | MS.gene40518:intron | 15.0% |
| !!! | ACAATACTTTTTCATTTTTA+TGG | + | chr5.4:499880-499899 | None:intergenic | 15.0% |
| !!! | GTTAGTTTTATAATTTGTTT+CGG | - | chr5.4:499918-499937 | MS.gene40518:intron | 15.0% |
| !!! | TTAGTTTTATAATTTGTTTC+GGG | - | chr5.4:499919-499938 | MS.gene40518:intron | 15.0% |
| !!! | TTTTTGGTAATGAAAAAATA+CGG | + | chr5.4:500822-500841 | None:intergenic | 15.0% |
| !! | AAAAATAATAAATGCTGCAT+TGG | - | chr5.4:501879-501898 | MS.gene40518:intron | 20.0% |
| !! | AAAAGCAAAAACTAAATACA+TGG | + | chr5.4:503108-503127 | None:intergenic | 20.0% |
| !! | AAAGCAAAAACTAAATACAT+GGG | + | chr5.4:503107-503126 | None:intergenic | 20.0% |
| !! | AAATCTTACAATGTATTTAG+AGG | + | chr5.4:501227-501246 | None:intergenic | 20.0% |
| !! | AACAAGAAAGGAAATTAAAT+GGG | + | chr5.4:499193-499212 | None:intergenic | 20.0% |
| !! | ACCAAAATGAAAAATTTAAG+AGG | - | chr5.4:499151-499170 | MS.gene40518:intron | 20.0% |
| !! | ATATATTTGCATCTGATTTA+TGG | - | chr5.4:503153-503172 | MS.gene40518:CDS | 20.0% |
| !! | ATTGATTATGGATTTAATAG+TGG | + | chr5.4:502140-502159 | None:intergenic | 20.0% |
| !! | GAAGTGAAGTAATTAATATT+TGG | + | chr5.4:500868-500887 | None:intergenic | 20.0% |
| !! | GGATGAAATTCAATAAATAA+GGG | - | chr5.4:501843-501862 | MS.gene40518:intron | 20.0% |
| !! | TCACTAACTACAATTAATAA+GGG | + | chr5.4:501811-501830 | None:intergenic | 20.0% |
| !! | TGGATGAAATTCAATAAATA+AGG | - | chr5.4:501842-501861 | MS.gene40518:intron | 20.0% |
| !! | TTCACTAACTACAATTAATA+AGG | + | chr5.4:501812-501831 | None:intergenic | 20.0% |
| !! | TTGTGTTTATATAAGACTTT+CGG | - | chr5.4:500123-500142 | MS.gene40518:intron | 20.0% |
| !! | TTTGAAAAAACATTGTCAAT+AGG | - | chr5.4:499848-499867 | MS.gene40518:intron | 20.0% |
| !!! | AAAAAAAAAGAGAGAAGTAT+AGG | - | chr5.4:502546-502565 | MS.gene40518:intron | 20.0% |
| !!! | AAAGTATTTGTTACAACTAT+TGG | - | chr5.4:499310-499329 | MS.gene40518:intron | 20.0% |
| !!! | AACATCATCATTTTAAGTAT+AGG | - | chr5.4:502080-502099 | MS.gene40518:intron | 20.0% |
| !!! | AATGTTTTTAGAAAGTAAAC+AGG | - | chr5.4:499710-499729 | MS.gene40518:CDS | 20.0% |
| !!! | ACAATGTTTTTTCAAATTCA+AGG | + | chr5.4:499844-499863 | None:intergenic | 20.0% |
| !!! | ACATCATCATTTTAAGTATA+GGG | - | chr5.4:502081-502100 | MS.gene40518:intron | 20.0% |
| !!! | ACCTCTTAAATTTTTCATTT+TGG | + | chr5.4:499155-499174 | None:intergenic | 20.0% |
| !!! | ATTAATTGTGTTGATTTTGA+TGG | - | chr5.4:501759-501778 | MS.gene40518:intron | 20.0% |
| !!! | ATTTTGCGAAAATAACATTT+AGG | - | chr5.4:499424-499443 | MS.gene40518:intron | 20.0% |
| !!! | TATTTTGAGAAAAGAAAAAG+TGG | - | chr5.4:501919-501938 | MS.gene40518:intron | 20.0% |
| !!! | TTCTTTTTAAATAACTAGCA+AGG | + | chr5.4:499665-499684 | None:intergenic | 20.0% |
| !!! | TTTTGCGAAAATAACATTTA+GGG | - | chr5.4:499425-499444 | MS.gene40518:intron | 20.0% |
| ! | AAACCTTATAAGGACTAATT+TGG | - | chr5.4:500677-500696 | MS.gene40518:CDS | 25.0% |
| ! | AAATTAGTCCTTATAAGGTT+TGG | + | chr5.4:500678-500697 | None:intergenic | 25.0% |
| ! | AAATTCTATGATACACCTTT+AGG | + | chr5.4:500239-500258 | None:intergenic | 25.0% |
| ! | AATTAGTCCTTATAAGGTTT+GGG | + | chr5.4:500677-500696 | None:intergenic | 25.0% |
| ! | ATACATTTGAGAAGTTTAAG+AGG | - | chr5.4:502759-502778 | MS.gene40518:CDS | 25.0% |
| ! | ATATAAAGAAGTGGAAAGAT+TGG | + | chr5.4:498972-498991 | None:intergenic | 25.0% |
| ! | ATTGTAAGATTTCAGAATCT+TGG | - | chr5.4:501235-501254 | MS.gene40518:intron | 25.0% |
| ! | CAACAAATATCACTGAAATA+AGG | + | chr5.4:502915-502934 | None:intergenic | 25.0% |
| ! | CATTAAAATAATGTGACTGA+TGG | + | chr5.4:503082-503101 | None:intergenic | 25.0% |
| ! | CTCTAAATAATAGTCGTTTA+AGG | - | chr5.4:501711-501730 | MS.gene40518:intron | 25.0% |
| ! | GAAAATGAAAATAGGAAACA+TGG | + | chr5.4:499463-499482 | None:intergenic | 25.0% |
| ! | GAACAAGAAAGGAAATTAAA+TGG | + | chr5.4:499194-499213 | None:intergenic | 25.0% |
| ! | GAAGAAGAGAATCAATTTAA+TGG | - | chr5.4:501648-501667 | MS.gene40518:intron | 25.0% |
| ! | GTTCATCAACTAATTATCAA+AGG | + | chr5.4:500165-500184 | None:intergenic | 25.0% |
| ! | TATAAAGAAGTGGAAAGATT+GGG | + | chr5.4:498971-498990 | None:intergenic | 25.0% |
| ! | TCAGAAAATGAAAACAGATA+GGG | + | chr5.4:499531-499550 | None:intergenic | 25.0% |
| ! | TCTAGTCAAAATGTGAATTT+GGG | - | chr5.4:500362-500381 | MS.gene40518:CDS | 25.0% |
| ! | TGAATTTCAAAAATTGCATC+TGG | + | chr5.4:502939-502958 | None:intergenic | 25.0% |
| ! | TTAATAAGTTCTTTCAGATC+AGG | - | chr5.4:501101-501120 | MS.gene40518:intron | 25.0% |
| ! | TTAGTGTACTTTGGTATTTA+GGG | - | chr5.4:499961-499980 | MS.gene40518:intron | 25.0% |
| ! | TTCAGAAAATGAAAACAGAT+AGG | + | chr5.4:499532-499551 | None:intergenic | 25.0% |
| ! | TTGTGTAAATGTTCAAGATA+AGG | + | chr5.4:502470-502489 | None:intergenic | 25.0% |
| ! | TTGTTATCTAGTGTATTACT+GGG | + | chr5.4:499292-499311 | None:intergenic | 25.0% |
| ! | TTTAGATAAGTTAATCCTGT+TGG | - | chr5.4:502798-502817 | MS.gene40518:intron | 25.0% |
| ! | TTTAGTGTACTTTGGTATTT+AGG | - | chr5.4:499960-499979 | MS.gene40518:intron | 25.0% |
| !! | AAACAATGAACAGAATGTTT+TGG | + | chr5.4:499567-499586 | None:intergenic | 25.0% |
| !! | AACAAAAATGAGTTTTTCTC+GGG | - | chr5.4:502598-502617 | MS.gene40518:intron | 25.0% |
| !! | AATTTTTCTGTATCAGATTC+AGG | + | chr5.4:502713-502732 | None:intergenic | 25.0% |
| !! | AGGTGTATCATAGAATTTTA+AGG | - | chr5.4:500241-500260 | MS.gene40518:intron | 25.0% |
| !! | ATTTTTCTGTATCAGATTCA+GGG | + | chr5.4:502712-502731 | None:intergenic | 25.0% |
| !! | CAACAAAAATGAGTTTTTCT+CGG | - | chr5.4:502597-502616 | MS.gene40518:intron | 25.0% |
| !! | GTATTTAGGGATTTTATTGA+AGG | - | chr5.4:499974-499993 | MS.gene40518:intron | 25.0% |
| !! | TATTTGTTACAACTATTGGA+AGG | - | chr5.4:499314-499333 | MS.gene40518:intron | 25.0% |
| !! | TTCATCAATCACATTGATTA+TGG | + | chr5.4:502152-502171 | None:intergenic | 25.0% |
| !! | TTCTTCAGTCTTTATTTGAA+GGG | + | chr5.4:503286-503305 | None:intergenic | 25.0% |
| !! | TTTCCATTTTGAATGCTTTA+GGG | - | chr5.4:501604-501623 | MS.gene40518:intron | 25.0% |
| !! | TTTGTTATCTAGTGTATTAC+TGG | + | chr5.4:499293-499312 | None:intergenic | 25.0% |
| !! | TTTTCCATTTTGAATGCTTT+AGG | - | chr5.4:501603-501622 | MS.gene40518:intron | 25.0% |
| !! | TTTTTCATCAACTAACTAAC+AGG | - | chr5.4:498874-498893 | MS.gene40518:intron | 25.0% |
| !!! | AATTTTAAGGCTTAGAGTTT+GGG | - | chr5.4:500254-500273 | MS.gene40518:intron | 25.0% |
| !!! | ACATTTTGACTAGAGATATA+TGG | + | chr5.4:500356-500375 | None:intergenic | 25.0% |
| !!! | ATTTTTTCGTAGTGTGTAAT+GGG | - | chr5.4:501013-501032 | MS.gene40518:intron | 25.0% |
| !!! | CAGTGCAAAAATAAGTTTTT+TGG | + | chr5.4:500838-500857 | None:intergenic | 25.0% |
| !!! | CGATTTTGCAAACTTTATTT+TGG | + | chr5.4:500905-500924 | None:intergenic | 25.0% |
| !!! | GTTTTTTCAAATTCAAGGTA+AGG | + | chr5.4:499839-499858 | None:intergenic | 25.0% |
| !!! | TGCTAAAAGTATTTGCATTT+AGG | - | chr5.4:500968-500987 | MS.gene40518:intron | 25.0% |
| !!! | TTGTTTTGAACTTGAATGTT+TGG | - | chr5.4:499740-499759 | MS.gene40518:CDS | 25.0% |
| AAAGAGAAGAGAATGAATGT+GGG | - | chr5.4:502230-502249 | MS.gene40518:intron | 30.0% | |
| AAATCTGCAAATAAGTCATC+AGG | + | chr5.4:502021-502040 | None:intergenic | 30.0% | |
| AACCTTGAAAACTAGTTCAA+GGG | - | chr5.4:500293-500312 | MS.gene40518:intron | 30.0% | |
| AAGAGACAATTATTGTGAGA+CGG | - | chr5.4:501944-501963 | MS.gene40518:intron | 30.0% | |
| ACCAATTGTAGGTCTATTAT+AGG | - | chr5.4:499810-499829 | MS.gene40518:CDS | 30.0% | |
| ACTGTCTTCAAAGTAAACTT+AGG | - | chr5.4:501488-501507 | MS.gene40518:intron | 30.0% | |
| AGGTTTATGCACGATTATTA+AGG | - | chr5.4:501731-501750 | MS.gene40518:intron | 30.0% | |
| AGTCAATAACAGATCTTTGA+TGG | - | chr5.4:500447-500466 | MS.gene40518:intron | 30.0% | |
| AGTTAGTGAAGTAGTTAAGT+TGG | - | chr5.4:501822-501841 | MS.gene40518:intron | 30.0% | |
| AGTTTCATCCTTATAAGACT+TGG | + | chr5.4:500330-500349 | None:intergenic | 30.0% | |
| ATAGGAAACATGGAAACTAA+AGG | + | chr5.4:499453-499472 | None:intergenic | 30.0% | |
| ATCTATTCCTAAGAAACTGT+AGG | + | chr5.4:499231-499250 | None:intergenic | 30.0% | |
| ATGAACAAAGTGATTGAGAA+TGG | - | chr5.4:502043-502062 | MS.gene40518:intron | 30.0% | |
| ATGACATTGCTCTTCTTAAT+AGG | - | chr5.4:502828-502847 | MS.gene40518:intron | 30.0% | |
| ATTATGACTTTACTTCGTGA+TGG | - | chr5.4:502109-502128 | MS.gene40518:intron | 30.0% | |
| ATTTCAGTCTAATAACGGTT+AGG | + | chr5.4:502628-502647 | None:intergenic | 30.0% | |
| CAAATTGAGTAACCAGAATA+AGG | + | chr5.4:501294-501313 | None:intergenic | 30.0% | |
| CATGTCAGTTGTCAAAAAAT+CGG | - | chr5.4:500558-500577 | MS.gene40518:intron | 30.0% | |
| CTCTAGTCAAAATGTGAATT+TGG | - | chr5.4:500361-500380 | MS.gene40518:CDS | 30.0% | |
| CTGTCTTCAAAGTAAACTTA+GGG | - | chr5.4:501489-501508 | MS.gene40518:intron | 30.0% | |
| CTTTCCACTTCTTTATATGA+AGG | - | chr5.4:498974-498993 | MS.gene40518:intron | 30.0% | |
| CTTTCGGTATAAACATTTAG+AGG | - | chr5.4:500139-500158 | MS.gene40518:intron | 30.0% | |
| GAAAAATTTAAGCTGCTTCT+CGG | + | chr5.4:498749-498768 | None:intergenic | 30.0% | |
| GCAAGAAGAAATACATCTAT+TGG | - | chr5.4:503242-503261 | MS.gene40518:CDS | 30.0% | |
| GCTCAATTTCAGTCTAATAA+CGG | + | chr5.4:502633-502652 | None:intergenic | 30.0% | |
| GTATTCTTCATCATCAGATT+GGG | + | chr5.4:502679-502698 | None:intergenic | 30.0% | |
| GTTTCAGTGATAATTACACA+AGG | - | chr5.4:501264-501283 | MS.gene40518:intron | 30.0% | |
| GTTTCATCCTTATAAGACTT+GGG | + | chr5.4:500329-500348 | None:intergenic | 30.0% | |
| TAGATTAAGAGTTTCTCTTG+TGG | + | chr5.4:498644-498663 | None:intergenic | 30.0% | |
| TAGGAAACATGGAAACTAAA+GGG | + | chr5.4:499452-499471 | None:intergenic | 30.0% | |
| TATAAAACTCCCTGTTGAAA+GGG | - | chr5.4:499771-499790 | MS.gene40518:CDS | 30.0% | |
| TATGCCTTTGACTAAAAACT+CGG | + | chr5.4:500209-500228 | None:intergenic | 30.0% | |
| TCAAACCCTTCAAAATAAGT+TGG | - | chr5.4:498612-498631 | MS.gene40518:CDS | 30.0% | |
| TCTTACAATGTATTTAGAGG+TGG | + | chr5.4:501224-501243 | None:intergenic | 30.0% | |
| TGAGAATATTGAGCCAAATT+TGG | - | chr5.4:502189-502208 | MS.gene40518:intron | 30.0% | |
| TGCAATTAAATGTCCTAAGT+TGG | - | chr5.4:502873-502892 | MS.gene40518:intron | 30.0% | |
| TGTATTCTTCATCATCAGAT+TGG | + | chr5.4:502680-502699 | None:intergenic | 30.0% | |
| TGTCTAAATAACCACATAGT+CGG | - | chr5.4:500090-500109 | MS.gene40518:intron | 30.0% | |
| TTAAATAACTAGCAAGGAGA+TGG | + | chr5.4:499659-499678 | None:intergenic | 30.0% | |
| TTATGACTTTACTTCGTGAT+GGG | - | chr5.4:502110-502129 | MS.gene40518:intron | 30.0% | |
| TTCGATATTCTTTGAATGCT+CGG | + | chr5.4:498725-498744 | None:intergenic | 30.0% | |
| ! | AAACCCTAAAGCATTCAAAA+TGG | + | chr5.4:501610-501629 | None:intergenic | 30.0% |
| ! | AAGCAGCTTAAATTTTTCCA+GGG | - | chr5.4:498751-498770 | MS.gene40518:intron | 30.0% |
| ! | CTGATGATGAAGAATACAAT+GGG | - | chr5.4:502682-502701 | MS.gene40518:intron | 30.0% |
| ! | CTTATTCTGGTTACTCAATT+TGG | - | chr5.4:501292-501311 | MS.gene40518:intron | 30.0% |
| ! | GTTCTTCAGTCTTTATTTGA+AGG | + | chr5.4:503287-503306 | None:intergenic | 30.0% |
| ! | TCTGATGATGAAGAATACAA+TGG | - | chr5.4:502681-502700 | MS.gene40518:intron | 30.0% |
| ! | TGTTAAATGTACATGCCTTT+TGG | - | chr5.4:501162-501181 | MS.gene40518:intron | 30.0% |
| !! | CATGAGATTTTCTTTGAGAA+AGG | + | chr5.4:502329-502348 | None:intergenic | 30.0% |
| !! | GTGAAACAGTTTTATCTTGA+GGG | + | chr5.4:502270-502289 | None:intergenic | 30.0% |
| !! | TAGTTTTTGCTTTTCCTCTT+AGG | - | chr5.4:503114-503133 | MS.gene40518:CDS | 30.0% |
| !! | TGTGAAACAGTTTTATCTTG+AGG | + | chr5.4:502271-502290 | None:intergenic | 30.0% |
| !! | TTTGATACCATCTGAGATTT+TGG | - | chr5.4:500613-500632 | MS.gene40518:intron | 30.0% |
| !! | TTTTGATTCATCTCTAACAC+AGG | - | chr5.4:499049-499068 | MS.gene40518:intron | 30.0% |
| !!! | ATTTTGAATGCTTTAGGGTT+TGG | - | chr5.4:501609-501628 | MS.gene40518:intron | 30.0% |
| !!! | CATTTTTTCGTAGTGTGTAA+TGG | - | chr5.4:501012-501031 | MS.gene40518:intron | 30.0% |
| !!! | GAATTTTAAGGCTTAGAGTT+TGG | - | chr5.4:500253-500272 | MS.gene40518:intron | 30.0% |
| !!! | GGGATTATTTTAGTGTACTT+TGG | - | chr5.4:499952-499971 | MS.gene40518:intron | 30.0% |
| !!! | TTCATCTGATGTTTTAGCAA+TGG | - | chr5.4:503032-503051 | MS.gene40518:intron | 30.0% |
| !!! | TTGTTTCGGGTTTTCAAATT+GGG | - | chr5.4:499932-499951 | MS.gene40518:intron | 30.0% |
| !!! | TTTGTTTCGGGTTTTCAAAT+TGG | - | chr5.4:499931-499950 | MS.gene40518:intron | 30.0% |
| AAAACCTAGCTTAAGGAGTA+AGG | - | chr5.4:500647-500666 | MS.gene40518:CDS | 35.0% | |
| AAATAACCACATAGTCGGTT+TGG | - | chr5.4:500095-500114 | MS.gene40518:intron | 35.0% | |
| AAATACATGGCTTCCTCAAA+AGG | - | chr5.4:498936-498955 | MS.gene40518:intron | 35.0% | |
| AAGACAAGACATATGTAGTG+TGG | - | chr5.4:500404-500423 | MS.gene40518:intron | 35.0% | |
| AAGAGAAGAGAATGAATGTG+GGG | - | chr5.4:502231-502250 | MS.gene40518:intron | 35.0% | |
| AAGGGATCATGCAATAATTG+AGG | - | chr5.4:498798-498817 | MS.gene40518:intron | 35.0% | |
| AATTTGGCCATATCTCTGAA+TGG | - | chr5.4:500693-500712 | MS.gene40518:CDS | 35.0% | |
| ACACTACATATGTCTTGTCT+TGG | + | chr5.4:500405-500424 | None:intergenic | 35.0% | |
| ACGAATGCATTCTCAAAGAT+TGG | - | chr5.4:498579-498598 | MS.gene40518:CDS | 35.0% | |
| ACGACTATTATTTAGAGACG+AGG | + | chr5.4:501708-501727 | None:intergenic | 35.0% | |
| ACTCTAATCTAGACCAACTT+AGG | + | chr5.4:502889-502908 | None:intergenic | 35.0% | |
| AGCTTATCCTACAGTTTCTT+AGG | - | chr5.4:499221-499240 | MS.gene40518:intron | 35.0% | |
| AGGAAACATGGAAACTAAAG+GGG | + | chr5.4:499451-499470 | None:intergenic | 35.0% | |
| AGGATTACCCAAACCTTATA+AGG | - | chr5.4:500667-500686 | MS.gene40518:CDS | 35.0% | |
| AGTTGTCAAAAAATCGGTCA+TGG | - | chr5.4:500564-500583 | MS.gene40518:intron | 35.0% | |
| ATGAGATGAATCAACAACAG+AGG | + | chr5.4:501540-501559 | None:intergenic | 35.0% | |
| ATGAGTTCCAAAATCTCAGA+TGG | + | chr5.4:500623-500642 | None:intergenic | 35.0% | |
| ATGTGATTGATGAAAGAGTC+AGG | - | chr5.4:502158-502177 | MS.gene40518:intron | 35.0% | |
| ATTGTTGAACCCTTTCAACA+GGG | + | chr5.4:499783-499802 | None:intergenic | 35.0% | |
| CAACCTTGAAAACTAGTTCA+AGG | - | chr5.4:500292-500311 | MS.gene40518:intron | 35.0% | |
| CAGTATTCTGTAAGGAGTAA+CGG | + | chr5.4:502972-502991 | None:intergenic | 35.0% | |
| CATCCATAAAACCTAGCTTA+AGG | - | chr5.4:500640-500659 | MS.gene40518:CDS | 35.0% | |
| CATGCAGACAGTATTAAACA+TGG | + | chr5.4:499001-499020 | None:intergenic | 35.0% | |
| CGACTATTATTTAGAGACGA+GGG | + | chr5.4:501707-501726 | None:intergenic | 35.0% | |
| CTATAAAACTCCCTGTTGAA+AGG | - | chr5.4:499770-499789 | MS.gene40518:CDS | 35.0% | |
| GAAAGAGAAGAGAATGAATG+TGG | - | chr5.4:502229-502248 | MS.gene40518:intron | 35.0% | |
| GATCACTGTTGTATGTACTT+AGG | - | chr5.4:501355-501374 | MS.gene40518:intron | 35.0% | |
| GCCTATAATAGACCTACAAT+TGG | + | chr5.4:499814-499833 | None:intergenic | 35.0% | |
| GGACAAAGTAAACAATTCTG+TGG | - | chr5.4:501465-501484 | MS.gene40518:intron | 35.0% | |
| TAAAACTGTTTCACAGTCCA+AGG | - | chr5.4:502276-502295 | MS.gene40518:intron | 35.0% | |
| TAATCCTTACTCCTTAAGCT+AGG | + | chr5.4:500654-500673 | None:intergenic | 35.0% | |
| TATGACTTTACTTCGTGATG+GGG | - | chr5.4:502111-502130 | MS.gene40518:intron | 35.0% | |
| TCTCTTAGATGGACCAAATT+TGG | + | chr5.4:502205-502224 | None:intergenic | 35.0% | |
| TCTTCAAAGTAAACTTAGGG+TGG | - | chr5.4:501492-501511 | MS.gene40518:intron | 35.0% | |
| TGATCAGTGAAAAACCTAAG+AGG | + | chr5.4:503131-503150 | None:intergenic | 35.0% | |
| TGGCCAAATTAGTCCTTATA+AGG | + | chr5.4:500683-500702 | None:intergenic | 35.0% | |
| TGGTCCTTCATATAAAGAAG+TGG | + | chr5.4:498981-499000 | None:intergenic | 35.0% | |
| TGTACATTTAACATCCCAAC+TGG | + | chr5.4:501155-501174 | None:intergenic | 35.0% | |
| TGTTGAAAGGGTTCAACAAT+GGG | - | chr5.4:499783-499802 | MS.gene40518:CDS | 35.0% | |
| TTTAATACTGTCTGCATGCA+TGG | - | chr5.4:499003-499022 | MS.gene40518:intron | 35.0% | |
| ! | AAGTTGGTCTAGATTAGAGT+TGG | - | chr5.4:502889-502908 | MS.gene40518:intron | 35.0% |
| ! | ACTCCTTAAGCTAGGTTTTA+TGG | + | chr5.4:500646-500665 | None:intergenic | 35.0% |
| ! | CATCAAGTGTTGTTATATGG+CGG | + | chr5.4:500590-500609 | None:intergenic | 35.0% |
| ! | GAAGCAGCTTAAATTTTTCC+AGG | - | chr5.4:498750-498769 | MS.gene40518:intron | 35.0% |
| ! | TGCCATCAAGTGTTGTTATA+TGG | + | chr5.4:500593-500612 | None:intergenic | 35.0% |
| ! | TTATAGCGATTGATGGCTTA+TGG | - | chr5.4:502371-502390 | MS.gene40518:intron | 35.0% |
| !! | AGCTCTGAATTGAACAAGAA+AGG | + | chr5.4:499205-499224 | None:intergenic | 35.0% |
| !! | TGAGAGCATAGCATTTTACT+GGG | + | chr5.4:501320-501339 | None:intergenic | 35.0% |
| !! | TTGAGAGCATAGCATTTTAC+TGG | + | chr5.4:501321-501340 | None:intergenic | 35.0% |
| !!! | AAGCAGCCAACTTATTTTGA+AGG | + | chr5.4:498621-498640 | None:intergenic | 35.0% |
| !!! | AGCAGCCAACTTATTTTGAA+GGG | + | chr5.4:498620-498639 | None:intergenic | 35.0% |
| !!! | ATCCCTTGAACTAGTTTTCA+AGG | + | chr5.4:500298-500317 | None:intergenic | 35.0% |
| !!! | CGATTTTTTGACAACTGACA+TGG | + | chr5.4:500560-500579 | None:intergenic | 35.0% |
| AAGAATGTGACGATACCAGT+TGG | - | chr5.4:501137-501156 | MS.gene40518:intron | 40.0% | |
| AATGTCATTGTCATGCCAAC+AGG | + | chr5.4:502816-502835 | None:intergenic | 40.0% | |
| ACAATTGACCTCCAATGACA+TGG | + | chr5.4:500030-500049 | None:intergenic | 40.0% | |
| AGAATGTGACGATACCAGTT+GGG | - | chr5.4:501138-501157 | MS.gene40518:intron | 40.0% | |
| AGACAATTATTGTGAGACGG+AGG | - | chr5.4:501947-501966 | MS.gene40518:intron | 40.0% | |
| AGCAATGGCATTGCATGAAA+AGG | - | chr5.4:503047-503066 | MS.gene40518:intron | 40.0% | |
| CAGGATTCAGAGTTTGCAAA+TGG | + | chr5.4:502002-502021 | None:intergenic | 40.0% | |
| CAGTCTAATAACGGTTAGGA+TGG | + | chr5.4:502624-502643 | None:intergenic | 40.0% | |
| CATTGTTGAACCCTTTCAAC+AGG | + | chr5.4:499784-499803 | None:intergenic | 40.0% | |
| CCAGCAATGGCATGTTTATA+TGG | + | chr5.4:500509-500528 | None:intergenic | 40.0% | |
| CCATATAAACATGCCATTGC+TGG | - | chr5.4:500506-500525 | MS.gene40518:intron | 40.0% | |
| CCTATCTTGCTTTATGCTTC+AGG | - | chr5.4:503194-503213 | MS.gene40518:CDS | 40.0% | |
| CCTGAAGCATAAAGCAAGAT+AGG | + | chr5.4:503197-503216 | None:intergenic | 40.0% | |
| CGCCATATAACAACACTTGA+TGG | - | chr5.4:500588-500607 | MS.gene40518:intron | 40.0% | |
| CGTTACTCCTTACAGAATAC+TGG | - | chr5.4:502970-502989 | MS.gene40518:intron | 40.0% | |
| CTATGATACACCTTTAGGTG+TGG | + | chr5.4:500234-500253 | None:intergenic | 40.0% | |
| CTCAGATTGTTGTAAGCAGA+AGG | - | chr5.4:499086-499105 | MS.gene40518:intron | 40.0% | |
| CTCTTTCTTCGTCTCTTAGA+TGG | + | chr5.4:502216-502235 | None:intergenic | 40.0% | |
| CTGACATGGACAATTTGTGA+AGG | + | chr5.4:500546-500565 | None:intergenic | 40.0% | |
| CTGTTGAAAGGGTTCAACAA+TGG | - | chr5.4:499782-499801 | MS.gene40518:CDS | 40.0% | |
| CTTCTGCTTACAACAATCTG+AGG | + | chr5.4:499088-499107 | None:intergenic | 40.0% | |
| GAACTCCAACCATTATGTCA+AGG | + | chr5.4:500004-500023 | None:intergenic | 40.0% | |
| GACAAGACCAGTATTCTGTA+AGG | + | chr5.4:502980-502999 | None:intergenic | 40.0% | |
| GACAATTATTGTGAGACGGA+GGG | - | chr5.4:501948-501967 | MS.gene40518:intron | 40.0% | |
| GCAATGGCATGTTTATATGG+TGG | + | chr5.4:500506-500525 | None:intergenic | 40.0% | |
| GCGATGTCACAACAAATACA+TGG | - | chr5.4:498923-498942 | MS.gene40518:intron | 40.0% | |
| GGTATCGTCACATTCTTTCT+GGG | + | chr5.4:501134-501153 | None:intergenic | 40.0% | |
| TAGTGAGCAGTTTCAAACCT+TGG | + | chr5.4:502296-502315 | None:intergenic | 40.0% | |
| TCATTGGCAGTAAAAGCTGA+TGG | - | chr5.4:503000-503019 | MS.gene40518:intron | 40.0% | |
| TCCTACACCATTCAGAGATA+TGG | + | chr5.4:500703-500722 | None:intergenic | 40.0% | |
| TCTACAAGACCAACTTTCTC+AGG | - | chr5.4:498660-498679 | MS.gene40518:intron | 40.0% | |
| TGAAAAAGCCAAGGAAAAGG+AGG | - | chr5.4:498898-498917 | MS.gene40518:intron | 40.0% | |
| TGATTGATGAAAGAGTCAGG+AGG | - | chr5.4:502161-502180 | MS.gene40518:intron | 40.0% | |
| TGGTATCGTCACATTCTTTC+TGG | + | chr5.4:501135-501154 | None:intergenic | 40.0% | |
| TTCTGTAAGCCTGAGAAAGT+TGG | + | chr5.4:498672-498691 | None:intergenic | 40.0% | |
| ! | ACACAAGGTGTTCCTTATTC+TGG | - | chr5.4:501279-501298 | MS.gene40518:intron | 40.0% |
| ! | AGAGCACTTATAGCGATTGA+TGG | - | chr5.4:502364-502383 | MS.gene40518:intron | 40.0% |
| ! | GTGATTGCCCAAGTCTTATA+AGG | - | chr5.4:500319-500338 | MS.gene40518:intron | 40.0% |
| ! | TGGGAATACCATACCTTTTG+AGG | + | chr5.4:498952-498971 | None:intergenic | 40.0% |
| !! | GAATACTGGTCTTGTCTCAT+TGG | - | chr5.4:502984-503003 | MS.gene40518:intron | 40.0% |
| !!! | GTGTCCGAGTTTTTAGTCAA+AGG | - | chr5.4:500202-500221 | MS.gene40518:CDS | 40.0% |
| AAAAGCCAAGGAAAAGGAGG+AGG | - | chr5.4:498901-498920 | MS.gene40518:intron | 45.0% | |
| AAGGCATACTCCACACCTAA+AGG | - | chr5.4:500221-500240 | MS.gene40518:CDS | 45.0% | |
| AATCAGCCTCTTGCAAAGCA+AGG | - | chr5.4:500061-500080 | MS.gene40518:intron | 45.0% | |
| ACTCCTCAGAGTCATCCAAA+AGG | + | chr5.4:501180-501199 | None:intergenic | 45.0% | |
| ACTGTAACGACAAGTAACCC+AGG | + | chr5.4:500778-500797 | None:intergenic | 45.0% | |
| AGGATCTCAACAGTGTACTC+TGG | - | chr5.4:500719-500738 | MS.gene40518:CDS | 45.0% | |
| AGTGTACTCTGGGTTTGTCA+GGG | - | chr5.4:500730-500749 | MS.gene40518:intron | 45.0% | |
| AGTTCATGCCATGTCATTGG+AGG | - | chr5.4:500019-500038 | MS.gene40518:intron | 45.0% | |
| CATGGCTTCCTCAAAAGGTA+TGG | - | chr5.4:498941-498960 | MS.gene40518:intron | 45.0% | |
| CTAACAGGCTGAAAAAGCCA+AGG | - | chr5.4:498889-498908 | MS.gene40518:intron | 45.0% | |
| GAAAGGGTTCAACAATGGGT+TGG | - | chr5.4:499787-499806 | MS.gene40518:CDS | 45.0% | |
| GAAGGAGAGCCTTGACATAA+TGG | - | chr5.4:499992-500011 | MS.gene40518:intron | 45.0% | |
| GAGAGCCTTGACATAATGGT+TGG | - | chr5.4:499996-500015 | MS.gene40518:intron | 45.0% | |
| GATGGCATCAGTGTTGTCAA+TGG | - | chr5.4:500465-500484 | MS.gene40518:intron | 45.0% | |
| GCATTCTCAAAGATTGGAGC+AGG | - | chr5.4:498585-498604 | MS.gene40518:CDS | 45.0% | |
| GCCATATCTCTGAATGGTGT+AGG | - | chr5.4:500699-500718 | MS.gene40518:CDS | 45.0% | |
| GGATCTCAACAGTGTACTCT+GGG | - | chr5.4:500720-500739 | MS.gene40518:CDS | 45.0% | |
| GGCTGAAAAAGCCAAGGAAA+AGG | - | chr5.4:498895-498914 | MS.gene40518:intron | 45.0% | |
| GTAGCGACACTAAGATAAGC+AGG | + | chr5.4:498559-498578 | None:intergenic | 45.0% | |
| TCTTCATCATCAGATTGGGC+TGG | + | chr5.4:502675-502694 | None:intergenic | 45.0% | |
| TGGAGTTCATGCCATGTCAT+TGG | - | chr5.4:500016-500035 | MS.gene40518:intron | 45.0% | |
| ! | AAACATGCCATTGCTGGCTA+TGG | - | chr5.4:500512-500531 | MS.gene40518:intron | 45.0% |
| ! | AGCTACTGCGTTTGCTGAAA+GGG | - | chr5.4:498780-498799 | MS.gene40518:intron | 45.0% |
| ! | ATGCCTTTTGGATGACTCTG+AGG | - | chr5.4:501174-501193 | MS.gene40518:intron | 45.0% |
| ! | GCAGTAAAAGCTGATGGACA+AGG | - | chr5.4:503006-503025 | MS.gene40518:intron | 45.0% |
| ! | TAGCTACTGCGTTTGCTGAA+AGG | - | chr5.4:498779-498798 | MS.gene40518:intron | 45.0% |
| ! | TGGATGACTCTGAGGAGTTA+TGG | - | chr5.4:501182-501201 | MS.gene40518:intron | 45.0% |
| !! | CAATGGGTTGGACCAATTGT+AGG | - | chr5.4:499799-499818 | MS.gene40518:CDS | 45.0% |
| !! | TGAGCATGCTACTTTGACCT+GGG | - | chr5.4:502648-502667 | MS.gene40518:intron | 45.0% |
| !! | TTGAGCATGCTACTTTGACC+TGG | - | chr5.4:502647-502666 | MS.gene40518:intron | 45.0% |
| ATGACGCCAAACCGACTATG+TGG | + | chr5.4:500104-500123 | None:intergenic | 50.0% | |
| CAGTGTACTCTGGGTTTGTC+AGG | - | chr5.4:500729-500748 | MS.gene40518:intron | 50.0% | |
| CATGCTAAGATGACGCTCCT+GGG | - | chr5.4:500758-500777 | MS.gene40518:intron | 50.0% | |
| GAGTGCATTAGAAGAGCAGC+TGG | - | chr5.4:501444-501463 | MS.gene40518:intron | 50.0% | |
| GCCTCTTGCAAAGCAAGGTA+AGG | - | chr5.4:500066-500085 | MS.gene40518:intron | 50.0% | |
| GCCTTACCTTGCTTTGCAAG+AGG | + | chr5.4:500070-500089 | None:intergenic | 50.0% | |
| GGCATCAGTGTTGTCAATGG+CGG | - | chr5.4:500468-500487 | MS.gene40518:intron | 50.0% | |
| GTGTACTCTGGGTTTGTCAG+GGG | - | chr5.4:500731-500750 | MS.gene40518:intron | 50.0% | |
| TCATGCTAAGATGACGCTCC+TGG | - | chr5.4:500757-500776 | MS.gene40518:intron | 50.0% | |
| ! | TCAGTGTTGTCAATGGCGGA+AGG | - | chr5.4:500472-500491 | MS.gene40518:intron | 50.0% |
| !! | GAGCATGCTACTTTGACCTG+GGG | - | chr5.4:502649-502668 | MS.gene40518:intron | 50.0% |
| ATACCCGCCATAGCCAGCAA+TGG | + | chr5.4:500522-500541 | None:intergenic | 55.0% | |
| ! | ATGCCATTGCTGGCTATGGC+GGG | - | chr5.4:500516-500535 | MS.gene40518:intron | 55.0% |
| ! | CATCGCCTCCTCCTTTTCCT+TGG | + | chr5.4:498909-498928 | None:intergenic | 55.0% |
| ! | CATGCCATTGCTGGCTATGG+CGG | - | chr5.4:500515-500534 | MS.gene40518:intron | 55.0% |
| ACGCAGTAGCTACACAGCCC+TGG | + | chr5.4:498771-498790 | None:intergenic | 60.0% | |
| !! | CATCAGATTGGGCTGGCCCC+AGG | + | chr5.4:502668-502687 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 498541 | 503326 | 498541 | ID=MS.gene40518 |
| chr5.4 | mRNA | 498541 | 503326 | 498541 | ID=MS.gene40518.t1;Parent=MS.gene40518 |
| chr5.4 | exon | 503048 | 503326 | 503048 | ID=MS.gene40518.t1.exon1;Parent=MS.gene40518.t1 |
| chr5.4 | CDS | 503048 | 503326 | 503048 | ID=cds.MS.gene40518.t1;Parent=MS.gene40518.t1 |
| chr5.4 | exon | 502910 | 502971 | 502910 | ID=MS.gene40518.t1.exon2;Parent=MS.gene40518.t1 |
| chr5.4 | CDS | 502910 | 502971 | 502910 | ID=cds.MS.gene40518.t1;Parent=MS.gene40518.t1 |
| chr5.4 | exon | 502695 | 502796 | 502695 | ID=MS.gene40518.t1.exon3;Parent=MS.gene40518.t1 |
| chr5.4 | CDS | 502695 | 502796 | 502695 | ID=cds.MS.gene40518.t1;Parent=MS.gene40518.t1 |
| chr5.4 | exon | 500630 | 500744 | 500630 | ID=MS.gene40518.t1.exon4;Parent=MS.gene40518.t1 |
| chr5.4 | CDS | 500630 | 500744 | 500630 | ID=cds.MS.gene40518.t1;Parent=MS.gene40518.t1 |
| chr5.4 | exon | 500354 | 500422 | 500354 | ID=MS.gene40518.t1.exon5;Parent=MS.gene40518.t1 |
| chr5.4 | CDS | 500354 | 500422 | 500354 | ID=cds.MS.gene40518.t1;Parent=MS.gene40518.t1 |
| chr5.4 | exon | 500186 | 500242 | 500186 | ID=MS.gene40518.t1.exon6;Parent=MS.gene40518.t1 |
| chr5.4 | CDS | 500186 | 500242 | 500186 | ID=cds.MS.gene40518.t1;Parent=MS.gene40518.t1 |
| chr5.4 | exon | 499570 | 499830 | 499570 | ID=MS.gene40518.t1.exon7;Parent=MS.gene40518.t1 |
| chr5.4 | CDS | 499570 | 499830 | 499570 | ID=cds.MS.gene40518.t1;Parent=MS.gene40518.t1 |
| chr5.4 | exon | 498799 | 498882 | 498799 | ID=MS.gene40518.t1.exon8;Parent=MS.gene40518.t1 |
| chr5.4 | CDS | 498799 | 498882 | 498799 | ID=cds.MS.gene40518.t1;Parent=MS.gene40518.t1 |
| chr5.4 | exon | 498541 | 498651 | 498541 | ID=MS.gene40518.t1.exon9;Parent=MS.gene40518.t1 |
| chr5.4 | CDS | 498541 | 498651 | 498541 | ID=cds.MS.gene40518.t1;Parent=MS.gene40518.t1 |
| Gene Sequence |
| Protein sequence |
