AlfalfaGEDB | MS.gene79604

M. sativa cultivar XinJiangDaYe / MS.gene79604

KEGG: -
GO: -
PFAM: PF07891.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79604.t1	XP_003621182.2	85.9	775	63	5	21	779	1	745	0.00E+00	1144.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79604.t1	Q2HVS4	85.9	775	63	5	21	779	1	745	0.0e+00	1144.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene79604	0.811143	8.11E-51	-1.69E-46
MS.gene049230	MS.gene79604	0.801088	1.06E-48	-1.69E-46
MS.gene049254	MS.gene79604	0.812304	4.53E-51	-1.69E-46
MS.gene049378	MS.gene79604	0.852247	5.23E-61	-1.69E-46
MS.gene049452	MS.gene79604	0.805601	1.23E-49	-1.69E-46
MS.gene049647	MS.gene79604	0.81594	7.15E-52	-1.69E-46
MS.gene049669	MS.gene79604	0.825859	3.73E-54	-1.69E-46
MS.gene049801	MS.gene79604	0.802075	6.66E-49	-1.69E-46
MS.gene050105	MS.gene79604	0.825923	3.60E-54	-1.69E-46
MS.gene050226	MS.gene79604	0.830204	3.35E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79604.t1	MTR_7g010160	88.660	776	40	6	21	779	1	745	0.0	1256
MS.gene79604.t1	MTR_5g040600	44.050	479	225	13	322	778	451	908	9.43e-107	348
MS.gene79604.t1	MTR_8g467380	42.175	377	193	10	400	757	452	822	1.64e-73	256
MS.gene79604.t1	MTR_8g467390	36.184	304	174	8	400	693	70	363	6.90e-46	168
MS.gene79604.t1	MTR_4g005350	35.366	328	183	14	455	778	122	424	4.94e-39	150
MS.gene79604.t1	MTR_6g084440	35.433	254	146	7	529	779	363	601	1.50e-25	112
MS.gene79604.t1	MTR_6g084440	35.547	256	145	8	529	779	363	603	2.06e-24	108
MS.gene79604.t1	MTR_8g104270	33.977	259	144	11	529	777	318	559	2.17e-20	96.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79604.t1	AT5G39785	54.768	409	164	9	388	778	200	605	6.45e-142	431
MS.gene79604.t1	AT5G39785	54.768	409	164	9	388	778	200	605	6.45e-142	431
MS.gene79604.t1	AT5G39785	54.768	409	164	9	388	778	200	605	6.45e-142	431
MS.gene79604.t1	AT5G39785	54.390	410	165	10	388	778	200	606	1.43e-139	425
MS.gene79604.t1	AT5G39785	51.613	434	164	10	388	778	200	630	2.97e-136	417
MS.gene79604.t1	AT1G69610	41.645	389	206	8	396	778	218	591	1.50e-80	270
MS.gene79604.t1	AT1G69610	41.645	389	206	8	396	778	263	636	7.99e-80	269
MS.gene79604.t1	AT1G69610	41.645	389	206	8	396	778	262	635	8.49e-80	269
MS.gene79604.t1	AT3G20260	34.226	336	186	10	455	778	124	436	1.35e-39	152
MS.gene79604.t1	AT3G01175	29.395	347	190	10	455	779	263	576	2.11e-27	118

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Find 103 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCAGCACTACAAATT+GGG	0.415795	7.3:-87877623	None:intergenic
AACAAGTATGAGTTTATCTC+AGG	0.467632	7.3:+87877951	MS.gene79604:CDS
AACTACAGATTTCGATACAT+TGG	0.456260	7.3:+87878487	MS.gene79604:CDS
AACTTGAAGAAGTTTCTTCA+TGG	0.394542	7.3:-87880816	None:intergenic
AAGAAACTATTAATGCCACG+TGG	0.745035	7.3:-87880509	None:intergenic
AAGAATCCATTAGAACAATT+TGG	0.248534	7.3:+87881804	MS.gene79604:CDS
AAGAGAATTATATAGTGACT+TGG	0.594503	7.3:+87880577	MS.gene79604:CDS
AATAGTGAAGAGGTTGTTGG+TGG	0.673028	7.3:+87878110	MS.gene79604:CDS
AATGTCTCAGAAAAGTTACA+TGG	0.576721	7.3:+87878233	MS.gene79604:CDS
AATTAATCTAACAATTAATT+AGG	0.249365	7.3:-87882837	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGGTCATAGAAAAATTG+TGG	-	chr7.3:87880223-87880242	None:intergenic	30.0%
AACAAGTATGAGTTTATCTC+AGG	+	chr7.3:87877951-87877970	MS.gene79604:CDS	30.0%
AACATAACTTTCCAAGAGAA+AGG	-	chr7.3:87880303-87880322	None:intergenic	30.0%
AACTACAGATTTCGATACAT+TGG	+	chr7.3:87878487-87878506	MS.gene79604:CDS	30.0%
AACTTGAAGAAGTTTCTTCA+TGG	-	chr7.3:87880819-87880838	None:intergenic	30.0%
AATGTCTCAGAAAAGTTACA+TGG	+	chr7.3:87878233-87878252	MS.gene79604:CDS	30.0%
ACTACAGATTTCGATACATT+GGG	+	chr7.3:87878488-87878507	MS.gene79604:CDS	30.0%
AGAAGAGGAAAAATCAAAGT+TGG	+	chr7.3:87877818-87877837	MS.gene79604:CDS	30.0%
AGATCCTAATTGTACTTGTT+AGG	+	chr7.3:87882314-87882333	MS.gene79604:intron	30.0%
AGTGCATGATCTATTATCAA+CGG	+	chr7.3:87881556-87881575	MS.gene79604:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	87877474	87882845	87877474	ID=MS.gene79604
chr7.3	mRNA	87877474	87882845	87877474	ID=MS.gene79604.t1;Parent=MS.gene79604
chr7.3	exon	87877474	87877514	87877474	ID=MS.gene79604.t1.exon1;Parent=MS.gene79604.t1
chr7.3	CDS	87877474	87877514	87877474	ID=cds.MS.gene79604.t1;Parent=MS.gene79604.t1
chr7.3	exon	87877599	87878986	87877599	ID=MS.gene79604.t1.exon2;Parent=MS.gene79604.t1
chr7.3	CDS	87877599	87878986	87877599	ID=cds.MS.gene79604.t1;Parent=MS.gene79604.t1
chr7.3	exon	87880432	87880851	87880432	ID=MS.gene79604.t1.exon3;Parent=MS.gene79604.t1
chr7.3	CDS	87880432	87880851	87880432	ID=cds.MS.gene79604.t1;Parent=MS.gene79604.t1
chr7.3	exon	87881717	87881952	87881717	ID=MS.gene79604.t1.exon4;Parent=MS.gene79604.t1
chr7.3	CDS	87881717	87881952	87881717	ID=cds.MS.gene79604.t1;Parent=MS.gene79604.t1
chr7.3	exon	87882591	87882845	87882591	ID=MS.gene79604.t1.exon5;Parent=MS.gene79604.t1
chr7.3	CDS	87882591	87882845	87882591	ID=cds.MS.gene79604.t1;Parent=MS.gene79604.t1

Gene Sequence

>MS.gene79604

ATGCAAACTCTGTTTTGGGTTTTCAACAAAGTGTTCATAAGGTATTGTAATTGAATTTCCATTATATGGTTAAAAAATTAATACTTTTTTTATTGATCAATTTAATTTTTGGTTTATGTTTTCAGATTTTATAGTTCTGAAGCAATGGTCCCAATTTGTAGTGCTGAATTTTCCAATGAAAATCATGAAATTGAGTCAAGTTTTTCTGAGTCAAAAATTGAGGCTGAGGAAGAAGAATTTTATGAATGTTTTGAGGAAATTTCTGATACTGTTTCACATGAAGAGGTGGGAGTGTTTGGTTCTGAAAATGTTGATGATCATAGTGTGAATTTTGACCTAGAAAAAGAAGAGGAAAAATCAAAGTTGGTGTTCAAATTTCAATATCAAAATTGGAATTGCGATTTTAGTGAGGAATTGAAGGGAAATTTGAGTGAAAGTAGTGATTTTGACAAAAGGGTTGGTGTTTCTTCAAGTGCTAACAAGTATGAGTTTATCTCAGGAAAGAGTTTTAGTAAATTCTTGGATGAACCAAAGGCTTCAAATTTTGCTGTCAAAGAGTTTTTCGTTCATCCGAATGATAATGTTCCGTTGGCGAAAAATCATGTGGCCGATGATTCAGCTGGTTTGTTATCTGAGAATAGTGAAGAGGTTGTTGGTGGCGAAGTTGTTGATAGTTTCTCAGAAAAATTGCGCATACAGGAGGTTTCGGATAAGCTCAAGAATTCGGAACAAGAGGTTTTTAATGGGAAAATTGTTGATAATGTCTCAGAAAAGTTACATGGAGTGGAGGTTTCGAATAAGCTCAAGAATTCGGAACAAGAGGTTGTTGATGGGAAAATTGTCGATAATGTCTCAGAAAAGTTACACGAAGAGGAGGTTTTAGAGAAGCTCAAGAATTCAGAACCATATGCGCGTAATTTTCTTTCTGATGATGATTTCATTTGTTCAAGCTCTGATACAGATTCTATAAGTTCTTTGGACGATGGTTTTTTGTCGGACACAGATTTTGGAACAACTACAGATTTCGATACATTGGGAAACAATGAAGAAGAAAATGTAGAAGATTTGGACTTTAAGGATGAGGAAAGCATAGAAAGTTTGGATTTTGGTTATGAGCCGGACGATTTCGGAGAAGAAGACGAAGATATAATGAATGAGCTTGGAAAATTAGAAGAAGAAATCAGACAGGAAGAATCGCTGAAACAACAAAATTCGAAGAGTTTAACAGCTTTTGATCTCGATGAGTCGAACCGGTTCGACACACTTTGGGAGCATCAGGATTTGATAGAACAGCTGAAGATGGAATTGAAGAAGGTTAAAGCTACTGGTTTACCTACTATCTTTGAGGATTCTGAATCACCAAGGATTATGGAAGATTTGAAGCCATGGAAAATTGATGAAAAATTTCAGCAAGGTAACAGTACTACAAATGAGCTTCCAAAATTCTACAGAAGTTACAGAGAAAGAATGAGAAAATTTGATATCTTGAATTACCAAAAGATGTATGCTTTAGGTAAGTGTTTTTTTCTTTATCCATTGCTTTAAATTTATTTACCTTTCTTCAGCAAGTTGCATATTAGTTTTATTCAATGTTTTAAAATCGAATAGACAGTTCAACCGGTTGAATCATGAACCGACATTGTCTATGGTTCGATTATTTGAGCAGTTCGACTGCGATTTTGCCCTAACATTTTAAATACATTGAACCATGACCTAGAGGTCTCGCCTGGTCAATGTTTGGTTTAGTTCTTAAAGCATTGATTTTACTTGTTTGCTTCCTTGTTCATGACAATTTTCATTTAACATCCTTGATCATCAAAACCTACCTTATCTAAACCATTAAAAAGTGTAGAGGTGACGACCCTACTAAATCTGGTTAGTTGAGCATTCAGAAAGCATGAATTACCCTATTATATGTGACACAAAAGTAAATTTTATGACACACTTTTTCTCTTTCTTTTTACTCTTTTCTATTATTGGTTTTGTTTATGGCAAGTTATATTCACCTTCAAATATTCATTTAATTGATTTCTTATATTTTTTGTTATTGCAACAAAAAGTGGTAGGAATGGAGGTTGGACATTAAGGAATTGAACAACTTTTTATGTCACATGCTTGGCTCTACTCTTTGTACTCATTAATGCCAATCCCCATTACTTGGTAGCTTTGCATTTTTCCTAAATATAGCCATATAAGTCTTTTCTTGTTTGTTAACTATAATAAGTAGGAACACTATTCTTTTGGTTGCATATATTTATTGATCTTCACATGTTTTCTTTTATTTCAAGACCGTTGATATTTTAAAACTCCAATATCTAATTACTACTACACTATGAAGCACGGATACGGACACAGACTCTGGACACGACACAGATAATGACACGTCGACATCGTTAATAATTTGAGAAAATTACATAATTAAGTGTAACTATATGTGTCGGTGTCGGACATGAGTCGTGTCCTACACCGGAACACAGCTAATCCGAGAAGTATCCATGTTTCATAGGACTACTGCATCGGTCCCTAATTATTTCATATAACAATATTCCCTTAATTTGAGAGAAACTCAGAAATTTGTAATAATTGACAAGTATTAGGGAGAATTAAGTGATGATATTTTAGTCCAAAGAAATTTTATTTTTTCAAACATGTGTGCACTAACCTTAAACACCAATTAACAAAATATATACTTGCAAAAAGCTAGCTCACTTTCTCATTGTGATCTAGCACTGATTATAATGCTCCACCACAATTTTTCTATGACCCTTTTGTTTTTATGTATATAAACAATCCTTGCCATGCAAGACAAGTTTGGAAAGCCATTTTCCTTTCTCTTGGAAAGTTATGTTGAACTTTGAATAATCTATGTGGCCTTTTACATTATGCTTAATTTTTAAGACTCAAATCATAGTCATCATAATATTAATCTTTTTAAGTTTCTTGTATATATTTTTATAGGTCTAATGAAGTCAAAGGACCCACTAAAATCATTTTCAATTCATAAGAAATCTTCATCAACAATCACATGCATTCTTCCACGTGGCATTAATAGTTTCTTTAGACGTAATAGGAACACTGATGCTGACCCAATGAAGAAGTTCATAAGAGAATTATATAGTGACTTGGAAATGGTCTATGTGGGACACTTGTGTCTTTCTTGGGAATTTCTTCATTGGGAATATGAAAAGGCTTTGAAGATATGGGAATCTGATCAATATGGATTGAGAAGGTTCAATGAAGTAGCTGGAGAATTTCAACAATTCCAAGTTCTTCTACAAAGATTTATAGAGAATGAACCTTTTCAAGGTCCAAGGGTTGAAAATTATGCTAGGAATCGTTGTGCCATGAAGAAACTTCTTCAAGTTCCTGTTATAAAAGGTGAGAACTTTAAAAGTAATGTGAATATGGTTAGTCCATTGGTTAGACCTTTAAAAGTAATGGTATAGTATTTGAATTTGAAAGTTTGCATTTGCATTAGTGTCTCTATGAAGCACAGACACTCTTCGGATTAGCTGTGTCTTGATGTCAAACATGTGTTGTGTCCGACACGACACACCGACGCATATTTACACTAATTATGTGATTTTCGCAAATTATTAGCGGTGTTGGCTTGTCAGTGCTTGTATTGTGTTTGTGTCGTGTCTGGTGTTTGTGTCTGTATATATGCTTCATAGGTCTATGTGAAACAATTTTAGAGACTAAATTGACCGACTTAATAGGATTAATAGAATATACTAAAAGATTTTAAATTTCAAAGAACTTCATCGAAATATTAATAATTGAAGGTGTACTATAATTTGAAAAAGAGTAAATAATCAAATTGATTCTTGAAATTATAGGAATTTTATCAATCTACTTCAATGAATAGTTTGAGTATATACTCTTCCAAAAATCAAATAGTGATTCACTATTCAAACTTTTTGTTAAGTTGGCTCCACTTTCTTTGAACTATGTGGGGGACCGGGATTGGATTCCCTGCTGTAAATATAGTTACAGCAGGGTGCTGTAACAGCACAGAGCCGTCGGATCTGAATCGTGTGGTTAAGATGATGTGGAGTGATTTGACAACTGAGTTAATTTAGAGTGCATGATCTATTATCAACGGCTGAGATGCAAAACAGCGGCAAACAGCATGCTTTATTTACAGCAGGGAATCCAATCCCGTGGGGGACCATATACAGTTCTATATGTGAGACAAAATAGTTCATCATGGCTTTAAAAATTCTTCAATTATTTGTTGCAGAAGACAAAGGCAAGGATAAAAAGAAGTTTAGAAAAAGAGAAGTTGACAATGATGCCATCACAAGTGACATGCTAGTAGAAATATTAGAAGAATCCATTAGAACAATTTGGCGTTTCATAAGAGGTGATAAAGATGCATCAAACTTGACAATTAAATGTCTTAAAGAACAACATGTGGAGCTACAAGACCCTGCTGATTCACAACTTCTAGTGGAGCTTCTAACGGATCTTCAAAAGGTAATTGAAGCTTCAAATGATACTTATTTTTTAAGCTTAAAAATGTTTTAACTATTCTCTTAAAATAAGTAAATTGTTTTAACTATTCACAACTTCTAGTAGAGACTAATTGTATTTTGATGACCAAAGTTTCAATTGCATAGATAAATGATCAAAATAAGGAGAAAAAAAAATGAAAATTCATCGTATTTCGGTGCTTAAAAAGCATATTTAGGGCGCCAAAATATTGTTGGAAGAGTTGGTGACATGACTCTCTTTCCGGAAAATAATCCAAGTTTGATTTTTGGAGTCGCCTATTTTTGGAATTGCTCCCATAGCGGGCCTAGGTGGTGAAATACCTTAAGGCGCCCGTAGAGGTCAAAGATCCTAATTGTACTTGTTAGGGAAAAAAAACAAACATATTTAAACCTATTGTGTAATGTCTTACTAATTTAGAAGTATCGAAAAAAGAATCAATAAAATGAAAATATAATTGATATATAATTTAAACATTTGATAACATAATAAGTACATTATATATAGAAATTTATCTATGTTGATTTTGAAGCAATGTGAAGACACTTGTTAGCATTTCCTTTTCTTATAAGAAGTTGTGTTCTGTTGTTTCTTATGTAAAACGTTGTTTTTTGAATTTGCAGAAGGAAAAGAGATTGAGAGAGGTTTTAAGGAGTGGAAGCTGCATATTGAAGAAATTCAAAAAGCATGATGAAGATGAAATAGATCCAGTTCTTTACTTTTTCTCTCAAGTGGATTTGAAACTTGTTTGTAGAGTGTTGAATATGTCAAGGATAACGACTGATCAACTAGCATGGTGTCGTAGTAAACTAAACAAGATCAATTTTGTAAACCGTAGGATACATGTAGAACCATCATTCTTACTTTTTCCTAATTAA

Protein sequence

>MS.gene79604.t1

MQTLFWVFNKVFIRFYSSEAMVPICSAEFSNENHEIESSFSESKIEAEEEEFYECFEEISDTVSHEEVGVFGSENVDDHSVNFDLEKEEEKSKLVFKFQYQNWNCDFSEELKGNLSESSDFDKRVGVSSSANKYEFISGKSFSKFLDEPKASNFAVKEFFVHPNDNVPLAKNHVADDSAGLLSENSEEVVGGEVVDSFSEKLRIQEVSDKLKNSEQEVFNGKIVDNVSEKLHGVEVSNKLKNSEQEVVDGKIVDNVSEKLHEEEVLEKLKNSEPYARNFLSDDDFICSSSDTDSISSLDDGFLSDTDFGTTTDFDTLGNNEEENVEDLDFKDEESIESLDFGYEPDDFGEEDEDIMNELGKLEEEIRQEESLKQQNSKSLTAFDLDESNRFDTLWEHQDLIEQLKMELKKVKATGLPTIFEDSESPRIMEDLKPWKIDEKFQQGNSTTNELPKFYRSYRERMRKFDILNYQKMYALGLMKSKDPLKSFSIHKKSSSTITCILPRGINSFFRRNRNTDADPMKKFIRELYSDLEMVYVGHLCLSWEFLHWEYEKALKIWESDQYGLRRFNEVAGEFQQFQVLLQRFIENEPFQGPRVENYARNRCAMKKLLQVPVIKEDKGKDKKKFRKREVDNDAITSDMLVEILEESIRTIWRFIRGDKDASNLTIKCLKEQHVELQDPADSQLLVELLTDLQKKEKRLREVLRSGSCILKKFKKHDEDEIDPVLYFFSQVDLKLVCRVLNMSRITTDQLAWCRSKLNKINFVNRRIHVEPSFLLFPN