AlfalfaGEDB | MS.gene35824

M. sativa cultivar XinJiangDaYe / MS.gene35824

KEGG: K20855
GO: GO:0003674 GO:0003824 GO:0005575 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009987 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:0110165 GO:1901564
PFAM: PF01762.24 PF13334.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35824.t1	XP_003596979.1	99.1	333	3	0	1	333	70	402	1.20E-174	622.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35824.t1	A8MRC7	75.7	338	77	2	1	333	70	407	5.3e-152	538.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35824.t1	G7ITY6	99.1	333	3	0	1	333	70	402	8.3e-175	622.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene35824	0.800009	1.76E-48	-1.69E-46
MS.gene049159	MS.gene35824	0.845439	4.06E-59	-1.69E-46
MS.gene049378	MS.gene35824	0.84034	9.22E-58	-1.69E-46
MS.gene049404	MS.gene35824	0.826006	3.44E-54	-1.69E-46
MS.gene049435	MS.gene35824	0.859839	3.13E-63	-1.69E-46
MS.gene049647	MS.gene35824	0.824204	9.16E-54	-1.69E-46
MS.gene049669	MS.gene35824	0.825069	5.73E-54	-1.69E-46
MS.gene049958	MS.gene35824	0.805837	1.10E-49	-1.69E-46
MS.gene050156	MS.gene35824	0.805156	1.53E-49	-1.69E-46
MS.gene050226	MS.gene35824	0.834106	3.63E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35824.t1	MTR_2g088270	98.799	333	4	0	1	333	70	402	0.0	684
MS.gene35824.t1	MTR_4g048320	81.361	338	58	2	1	333	12	349	0.0	593
MS.gene35824.t1	MTR_4g048320	81.361	338	58	2	1	333	70	407	0.0	592
MS.gene35824.t1	MTR_3g073370	67.267	333	104	3	2	333	68	396	6.73e-173	486
MS.gene35824.t1	MTR_3g073370	67.267	333	104	3	2	333	67	395	8.09e-173	485
MS.gene35824.t1	MTR_4g013305	65.861	331	108	3	8	333	48	378	9.62e-164	462
MS.gene35824.t1	MTR_4g035490	59.248	319	125	2	13	330	66	380	1.42e-151	431
MS.gene35824.t1	MTR_5g009700	47.368	266	132	3	19	283	74	332	1.36e-83	256
MS.gene35824.t1	MTR_5g009700	47.826	253	124	3	32	283	1	246	1.21e-81	248
MS.gene35824.t1	MTR_3g090600	48.846	260	125	4	25	283	80	332	2.07e-81	251

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35824.t1	AT1G05170	80.178	338	62	2	1	333	70	407	0.0	585
MS.gene35824.t1	AT2G32430	79.290	338	65	2	1	333	72	409	0.0	548
MS.gene35824.t1	AT4G26940	77.083	336	73	1	2	333	72	407	0.0	546
MS.gene35824.t1	AT1G05170	79.443	287	55	1	1	283	70	356	1.03e-176	494
MS.gene35824.t1	AT1G32930	68.012	322	102	1	13	333	78	399	5.37e-174	488
MS.gene35824.t1	AT1G11730	69.716	317	89	2	17	332	73	383	2.38e-170	479
MS.gene35824.t1	AT1G77810	66.061	330	94	4	2	330	69	381	2.53e-165	466
MS.gene35824.t1	AT1G77810	65.465	333	94	5	2	330	69	384	3.46e-163	461
MS.gene35824.t1	AT1G33430	62.805	328	116	4	8	333	70	393	2.56e-152	433
MS.gene35824.t1	AT1G22015	61.180	322	120	2	13	333	78	395	4.77e-150	427

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Find 62 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCTTGCAGAGGAGTA+AGG	0.491081	2.1:+13131781	MS.gene35824:intron
AAAGAAGTTAGAGGAAGAGA+AGG	0.449533	2.1:+13130838	MS.gene35824:CDS
AAGAAGTTAGAGGAAGAGAA+GGG	0.551717	2.1:+13130839	MS.gene35824:CDS
AAGTACTTTCGTCATGCGAC+AGG	0.539105	2.1:+13131846	MS.gene35824:CDS
AAGTGATCATTACCAATCTC+AGG	0.483099	2.1:-13131159	None:intergenic
ACATGGAGATTTCCTGAGAT+TGG	0.407780	2.1:+13131147	MS.gene35824:CDS
ACCCATGACCAATTACAAAG+CGG	0.684488	2.1:-13130871	None:intergenic
AGAAGGTACCTAATGGTTAT+AGG	0.369031	2.1:+13130450	MS.gene35824:CDS
AGACAAGACTATTTCAAATT+TGG	0.187361	2.1:+13130332	MS.gene35824:CDS
AGACTATGCTGTGGTACAAC+AGG	0.477338	2.1:+13132084	MS.gene35824:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGTCCACAAAAAATG+TGG	+	chr2.1:13132622-13132641	MS.gene35824:CDS	30.0%
ACTAAACTCGAGATAGTTAT+AGG	-	chr2.1:13130934-13130953	None:intergenic	30.0%
AGATAAGTGAATCAACTGTT+AGG	+	chr2.1:13130427-13130446	MS.gene35824:CDS	30.0%
ATCTTCATATCTTCTGATAC+AGG	-	chr2.1:13130411-13130430	None:intergenic	30.0%
ATTATCATCCGCTTTGTAAT+TGG	+	chr2.1:13130863-13130882	MS.gene35824:CDS	30.0%
CATATTTCCATAAATTCTCG+TGG	-	chr2.1:13131455-13131474	None:intergenic	30.0%
GTTATATGTAACTCACTGTA+TGG	-	chr2.1:13130237-13130256	None:intergenic	30.0%
TCATAAGTAAGAGGAAAAAG+TGG	-	chr2.1:13131927-13131946	None:intergenic	30.0%
TGAGAAAAGAAAGAAGTTAG+AGG	+	chr2.1:13130829-13130848	MS.gene35824:CDS	30.0%
TTGAAACTATAGAGATGAGA+TGG	-	chr2.1:13130900-13130919	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	13130179	13132681	13130179	ID=MS.gene35824
chr2.1	mRNA	13130179	13132681	13130179	ID=MS.gene35824.t1;Parent=MS.gene35824
chr2.1	exon	13130179	13130240	13130179	ID=MS.gene35824.t1.exon1;Parent=MS.gene35824.t1
chr2.1	CDS	13130179	13130240	13130179	ID=cds.MS.gene35824.t1;Parent=MS.gene35824.t1
chr2.1	exon	13130326	13130537	13130326	ID=MS.gene35824.t1.exon2;Parent=MS.gene35824.t1
chr2.1	CDS	13130326	13130537	13130326	ID=cds.MS.gene35824.t1;Parent=MS.gene35824.t1
chr2.1	exon	13130828	13130891	13130828	ID=MS.gene35824.t1.exon3;Parent=MS.gene35824.t1
chr2.1	CDS	13130828	13130891	13130828	ID=cds.MS.gene35824.t1;Parent=MS.gene35824.t1
chr2.1	exon	13131096	13131168	13131096	ID=MS.gene35824.t1.exon4;Parent=MS.gene35824.t1
chr2.1	CDS	13131096	13131168	13131096	ID=cds.MS.gene35824.t1;Parent=MS.gene35824.t1
chr2.1	exon	13131273	13131393	13131273	ID=MS.gene35824.t1.exon5;Parent=MS.gene35824.t1
chr2.1	CDS	13131273	13131393	13131273	ID=cds.MS.gene35824.t1;Parent=MS.gene35824.t1
chr2.1	exon	13131602	13131689	13131602	ID=MS.gene35824.t1.exon6;Parent=MS.gene35824.t1
chr2.1	CDS	13131602	13131689	13131602	ID=cds.MS.gene35824.t1;Parent=MS.gene35824.t1
chr2.1	exon	13131794	13131919	13131794	ID=MS.gene35824.t1.exon7;Parent=MS.gene35824.t1
chr2.1	CDS	13131794	13131919	13131794	ID=cds.MS.gene35824.t1;Parent=MS.gene35824.t1
chr2.1	exon	13131999	13132105	13131999	ID=MS.gene35824.t1.exon8;Parent=MS.gene35824.t1
chr2.1	CDS	13131999	13132105	13131999	ID=cds.MS.gene35824.t1;Parent=MS.gene35824.t1
chr2.1	exon	13132533	13132681	13132533	ID=MS.gene35824.t1.exon9;Parent=MS.gene35824.t1
chr2.1	CDS	13132533	13132681	13132533	ID=cds.MS.gene35824.t1;Parent=MS.gene35824.t1

Gene Sequence

>MS.gene35824

TTGCAAGAGAAGGAAGTGAAGCGCGATACGAAAGGCGTTTTCAAGACACAAAAAACCATACAGTGAGTTACATATAACATGATCTTGTTTATCATTTTTGTTTGTGTTATTTTGCATACTAAACAAGTGAAATTGTGTTGAATGTAGAAACTTAGACAAGACTATTTCAAATTTGGAAATGGAACTAGCTTCTGCTAAAGCAGCTCAAGAGTCTCTAAAAAGTGGTGCTCCTGTATCAGAAGATATGAAGATAAGTGAATCAACTGTTAGGAGAAGGTACCTAATGGTTATAGGAATTAACACTGCTTTTAGCAGCAGAAAAAGAAGAGATTCCGTTCGCGCCACTTGGATGCCACAAGGTTCATAATTCGATCATCGCTTCCTTATATTTTTGAGTTTAATAACTATTCACCGATAACATTTTACACATACGTCCATTCATATATTACCATCTTATCATATCATACTATTACTTATCGAAAATTGTTTACGATGTGTGATAAGATCGTAAAATATGACTGAAGAACTATATAAAACATGTTTGTTCTATGTGAATGTATTGTTCTTAAACTGTTTTTCTATTGTATTCCTTCTATTCTTGTGCACACTTTATAAACTATTGATTCTCTGGTGACATCTTGGAAAACAGGTGAGAAAAGAAAGAAGTTAGAGGAAGAGAAGGGCATTATCATCCGCTTTGTAATTGGTCATGGGTAAGCCATCTCATCTCTATAGTTTCAACGATTTTAGCTCCTATAACTATCTCGAGTTTAGTTTCTACTTTTAAGTTTGTAAATTGCAAAACTAACTAAAAGCGCGCAGTTTTATAACTTGTATGAACTAAAATGCGAGTTCAAGATACTTATAAATTTATTTTGAATGATTTAATAAATTTATTTTTTTACTCCTTTCTCTAGTGCCACGACAGGTGGTATCCTAGATCGAGCTATTGAGGCAGAAGATAGTAAACATGGAGATTTCCTGAGATTGGTAATGATCACTTGAATAACATTTGACAATATAGTATGATCCTATTGATTTGAAGGAGGAAAGAAAAGACAACAAGTTTTCAAATTTGTGTTTTGATTGTGCAGGATCATGTTGAAGGATACCTTGAATTATCAGCAAAGACAAAAACCTACTTTGCTACTGCTGTTAACTTGTGGGATGCTGACTTCTACATAAAAGTTGATGATGATGTTCATGTAAATATAGGTATAAAATGTTACTCAATTCTCAAGCTATTTTTTATATAAGCTATATAGGTTTGTTTCCACGAGAATTTATGGAAATATGCTGAAATTTGCTTACAAACATGTCATAAGCCGTTTCTATAATCTCTTCGAAAGAGTTATGTTGAATCATGTCATCATTTTAATACAAATATAAGTTTGTCTTAGTATCCAATTCAATCTATTTTCAGCAACACTCGGAGAAACTCTAATTAGACATCGAGCAAAACCACGAGTATACATCGGATGCATGAAATCTGGACCGGTTCTTGCTCAAAAGTGAGAACTATTTTCCTTTATCCATCTTTTTATTTAACAAAAGAGTTGTAAATTTGAGACATTTCACTTCTAGCTTCTTACATTACATGTCAAAATTCTTGCAGAGGAGTAAGGTACCATGAACCAGAATACTGGAAATTTGGTGAGACAGGAAACAAGTACTTTCGTCATGCGACAGGACAATTGTATGTTGTTTCAAAAGATCTTGCTACATACATTGCAACAAACAAGTAACCACTTTTTCCTCTTACTTATGAAGTAAAAAATATAATTGAAGTGAAATTAATGGACTTTGTGTGTATGTGTTAGGAATGTTCTTCACAAGTATGCAAATGAGGATGTTTCATTAGGAGCTTGGTTTATTGGTCTTGATGTGGAACACATAGATGATCGTAGACTATGCTGTGGTACAACAGGTGAAAATCTTTTCCTATATTAATAGATGATTGATTCATATATACAAATAAAAATTATATCTGGACCGTCAATACATTCCTAAGGGCTCGAATGCCCTCTAGAAAGGCTTAGGCGCCCTCCAGAAGGGCTCCTGAGGCATAGGCGCGCCCTTCCAGAGGCGCCTCCTCAACTAGCTAGCAATCTAGAAGCATATAGAGCTTAGTAAAAAGACTTAAAACCCAACTTGCTTGGGGTTTAAGTCGCGTAAAAACAAGCCCACAAAGCGCTATAAATACCCCTTTTGGATCATTCTCAAGGCATCTCATAAACAGTTTAAACCCTAAATTCTATTATTGTACTCACTGCAAGTACAATATCCTATAAATCTTTATTTGTTTTATAAGTTGTGATAATAATTTTAAATTCTTGAATTGGTCCATCATGCAGATTGTGAATGGAAGGCTCAAGCGGGCAATGCATGTGTTGCTTCATTTGATTGGACATGCAGTGGAATTTGTAGGTCTGCTGAAAGAATTAAAGAAGTCCACAAAAAATGTGGAGAAGGTGAGAAAGCTTTGTGGAGTGCTTCTTTCTAG

Protein sequence

>MS.gene35824.t1

LQEKEVKRDTKGVFKTQKTIQNLDKTISNLEMELASAKAAQESLKSGAPVSEDMKISESTVRRRYLMVIGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHGATTGGILDRAIEAEDSKHGDFLRLDHVEGYLELSAKTKTYFATAVNLWDADFYIKVDDDVHVNIATLGETLIRHRAKPRVYIGCMKSGPVLAQKGVRYHEPEYWKFGETGNKYFRHATGQLYVVSKDLATYIATNKNVLHKYANEDVSLGAWFIGLDVEHIDDRRLCCGTTDCEWKAQAGNACVASFDWTCSGICRSAERIKEVHKKCGEGEKALWSASF