AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35864


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 69 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTAGGAGCTTGGTTTAT+TGG 0.181423 2.1:-13194068 MS.gene35864:CDS
AGACAAGACTATTTCAAATT+TGG 0.187361 2.1:-13195769 MS.gene35864:CDS
ATTATCATCCGCTTTGTAAT+TGG 0.210456 2.1:-13195238 MS.gene35864:CDS
GAACCAGAATACTGGAAATT+TGG 0.236437 2.1:-13194291 MS.gene35864:CDS
TCACCAAATTTCCAGTATTC+TGG 0.244223 2.1:+13194288 None:intergenic
CATGTGTTGCTTCATTTGAT+TGG 0.320410 2.1:-13193538 MS.gene35864:CDS
TTTGTGGAGTGCTTCTTTCT+AGG 0.339012 2.1:-13193441 None:intergenic
ATTTCCAGTATTCTGGTTCA+TGG 0.346108 2.1:+13194295 None:intergenic
GTTGTCCTCGCAAGTCCTTT+AGG 0.352932 2.1:+13196082 None:intergenic
TGCTACTGCTGTTAACTTGT+GGG 0.357057 2.1:-13194778 MS.gene35864:CDS
GACTATTTCAAATTTGGAAA+TGG 0.359715 2.1:-13195763 MS.gene35864:CDS
GCAAATGAGGATGTTTCATT+AGG 0.363722 2.1:-13194083 MS.gene35864:CDS
CTCGCAAGTCCTTTAGGTTC+AGG 0.363890 2.1:+13196088 None:intergenic
AGAAGGTACCTAATGGTTAT+AGG 0.369031 2.1:-13195651 MS.gene35864:CDS
TTGTCTTTGCTGATAATTCA+AGG 0.373953 2.1:+13194811 None:intergenic
ATCTTCATATCTTCTGATAC+AGG 0.403107 2.1:+13195693 None:intergenic
ACATGGAGATTTCCTGAGAT+TGG 0.407780 2.1:-13194954 MS.gene35864:intron
GAGATTCCGTTCGCGCCACT+TGG 0.410674 2.1:-13195596 MS.gene35864:CDS
TGAGAAAAGAAAGAAGTTAG+AGG 0.413201 2.1:-13195272 MS.gene35864:CDS
TGTTAATTCCTATAACCATT+AGG 0.414080 2.1:+13195643 None:intergenic
TACTGGAAATTTGGTGAGAC+AGG 0.417346 2.1:-13194282 MS.gene35864:CDS
TACATCGGATGCATGAAATC+TGG 0.429775 2.1:-13194452 MS.gene35864:CDS
GGACATGCAGTGGAATTTGT+AGG 0.432142 2.1:-13193517 MS.gene35864:CDS
GTTAACAGCAGTAGCAAAGT+AGG 0.436177 2.1:+13194785 None:intergenic
CTGCCTCAATAGCTCGATCT+AGG 0.448168 2.1:+13194987 None:intergenic
AAAGAAGTTAGAGGAAGAGA+AGG 0.449533 2.1:-13195263 MS.gene35864:CDS
GATGATGTTCATGTAAATAT+AGG 0.452270 2.1:-13194729 MS.gene35864:intron
GGTACCATGAACCAGAATAC+TGG 0.454852 2.1:-13194299 MS.gene35864:CDS
AGGATGTTTCATTAGGAGCT+TGG 0.461834 2.1:-13194076 MS.gene35864:CDS
ATCCGCTTTGTAATTGGTCA+TGG 0.467305 2.1:-13195232 MS.gene35864:CDS
AGATAAGTGAATCAACTGTT+AGG 0.471693 2.1:-13195674 MS.gene35864:CDS
AGACTATGCTGTGGTACAAC+AGG 0.477338 2.1:-13194017 MS.gene35864:intron
AAGTGATCATTACCAATCTC+AGG 0.483099 2.1:+13194942 None:intergenic
TTGCTACTGCTGTTAACTTG+TGG 0.487451 2.1:-13194779 MS.gene35864:CDS
AAAATTCTTGCAGAGGAGTA+AGG 0.491081 2.1:-13194320 MS.gene35864:intron
TGGCATCCAAGTGGCGCGAA+CGG 0.528936 2.1:+13195590 None:intergenic
TGTTAGGAGAAGGTACCTAA+TGG 0.531626 2.1:-13195658 MS.gene35864:CDS
GAGAAGGTGAGAAAGCTTTG+TGG 0.536239 2.1:-13193457 MS.gene35864:CDS
CGCGCCACTTGGATGCCACA+AGG 0.537211 2.1:-13195585 MS.gene35864:intron
AAGTACTTTCGTCATGCGAC+AGG 0.539105 2.1:-13194255 MS.gene35864:CDS
TTCTCTAGTGCCACGACAGG+TGG 0.546041 2.1:-13195013 MS.gene35864:intron
TCCATCATGCAGATTGTGAA+TGG 0.546325 2.1:-13193580 MS.gene35864:intron
TGGACTATTCCTGAACCTAA+AGG 0.548621 2.1:-13196097 MS.gene35864:CDS
TCCGCTTTGTAATTGGTCAT+GGG 0.549475 2.1:-13195231 MS.gene35864:intron
AAGAAGTTAGAGGAAGAGAA+GGG 0.551717 2.1:-13195262 MS.gene35864:CDS
ATTGTGCAGGATCATGTTGA+AGG 0.557008 2.1:-13194837 MS.gene35864:intron
TTGGTTTATTGGTCTTGATG+TGG 0.560157 2.1:-13194057 MS.gene35864:CDS
CCTTTCTCTAGTGCCACGAC+AGG 0.562439 2.1:-13195016 MS.gene35864:intron
TCTTCACAAGTATGCAAATG+AGG 0.564981 2.1:-13194096 MS.gene35864:CDS
TATCCTAGATCGAGCTATTG+AGG 0.566969 2.1:-13194990 MS.gene35864:CDS
CAATTAAATTTAGTTACAGA+GGG 0.567403 2.1:-13196043 MS.gene35864:CDS
CGGATGCATGAAATCTGGAC+CGG 0.576274 2.1:-13194447 MS.gene35864:CDS
TCATGCAGATTGTGAATGGA+AGG 0.579298 2.1:-13193576 MS.gene35864:intron
TCATTTGATTGGACATGCAG+TGG 0.579796 2.1:-13193527 MS.gene35864:CDS
TGTGAATGGAAGGCTCAAGC+GGG 0.589727 2.1:-13193566 MS.gene35864:CDS
TCTTCTTTAGTTGCAAGAGA+AGG 0.590624 2.1:-13195932 MS.gene35864:intron
GTGAATCAACTGTTAGGAGA+AGG 0.596720 2.1:-13195668 MS.gene35864:CDS
ACAATTAAATTTAGTTACAG+AGG 0.607776 2.1:-13196044 MS.gene35864:CDS
TTGTGAATGGAAGGCTCAAG+CGG 0.615812 2.1:-13193567 MS.gene35864:CDS
ATGCATCCGATGTATACTCG+TGG 0.617141 2.1:+13194461 None:intergenic
ACTTGCGAGGACAACAGCAA+TGG 0.618474 2.1:-13196074 MS.gene35864:CDS
ATCTAGGATACCACCTGTCG+TGG 0.640845 2.1:+13195003 None:intergenic
GAGGCAGAAGATAGTAAACA+TGG 0.646324 2.1:-13194971 MS.gene35864:CDS
GAAGTGAAGCGCGATACGAA+AGG 0.667111 2.1:-13195910 MS.gene35864:CDS
ACCCATGACCAATTACAAAG+CGG 0.684488 2.1:+13195230 None:intergenic
GATGATCGTAGACTATGCTG+TGG 0.703632 2.1:-13194026 MS.gene35864:CDS
TGAACCTTGTGGCATCCAAG+TGG 0.703947 2.1:+13195581 None:intergenic
GCAAAACCACGAGTATACAT+CGG 0.705929 2.1:-13194467 MS.gene35864:CDS
CTGAACCTAAAGGACTTGCG+AGG 0.714939 2.1:-13196087 MS.gene35864:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACAAATAAAAATTATATC+TGG - chr2.1:13195589-13195608 MS.gene35864:CDS 10.0%
!! TAAAACAAATAAAGATTTAT+AGG + chr2.1:13195908-13195927 None:intergenic 10.0%
!! TTATTAAACTCAAAAATATA+AGG + chr2.1:13194005-13194024 None:intergenic 10.0%
!!! ATAATTTTAAATTCTTGAAT+TGG - chr2.1:13195940-13195959 MS.gene35864:intron 10.0%
!!! ATTTTTTATATAAGCTATAT+AGG - chr2.1:13194864-13194883 MS.gene35864:intron 10.0%
!! AATCAATCATCTATTAATAT+AGG + chr2.1:13195564-13195583 None:intergenic 15.0%
!! TATAATTGAAGTGAAATTAA+TGG - chr2.1:13195398-13195417 MS.gene35864:intron 15.0%
!! TTAAATAAAAAGATGGATAA+AGG + chr2.1:13195149-13195168 None:intergenic 15.0%
!!! TCTTTTGTTAAATAAAAAGA+TGG + chr2.1:13195156-13195175 None:intergenic 15.0%
!! AATAGTATGATATGATAAGA+TGG + chr2.1:13194072-13194091 None:intergenic 20.0%
!! ACAATTAAATTTAGTTACAG+AGG - chr2.1:13193499-13193518 MS.gene35864:CDS 20.0%
!! ATAAGATGGTAATATATGAA+TGG + chr2.1:13194058-13194077 None:intergenic 20.0%
!! CAATTAAATTTAGTTACAGA+GGG - chr2.1:13193500-13193519 MS.gene35864:CDS 20.0%
!! GAGTACAATAATAGAATTTA+GGG + chr2.1:13195869-13195888 None:intergenic 20.0%
!! TGAGTACAATAATAGAATTT+AGG + chr2.1:13195870-13195889 None:intergenic 20.0%
!!! TTTATAAACTATTGATTCTC+TGG - chr2.1:13194229-13194248 MS.gene35864:CDS 20.0%
!!! TTTTTTACTTCATAAGTAAG+AGG + chr2.1:13195378-13195397 None:intergenic 20.0%
! ACGTATGTGTAAAATGTTAT+CGG + chr2.1:13194035-13194054 None:intergenic 25.0%
! AGACAAGACTATTTCAAATT+TGG - chr2.1:13193774-13193793 MS.gene35864:intron 25.0%
! GACTATTTCAAATTTGGAAA+TGG - chr2.1:13193780-13193799 MS.gene35864:intron 25.0%
! GATGATGTTCATGTAAATAT+AGG - chr2.1:13194814-13194833 MS.gene35864:CDS 25.0%
! TGTTAATTCCTATAACCATT+AGG + chr2.1:13193903-13193922 None:intergenic 25.0%
! TTGCTGAAAATAGATTGAAT+TGG + chr2.1:13195027-13195046 None:intergenic 25.0%
! TTTCGAAGAGATTATAGAAA+CGG + chr2.1:13194949-13194968 None:intergenic 25.0%
AAAGAAGTCCACAAAAAATG+TGG - chr2.1:13196064-13196083 MS.gene35864:CDS 30.0%
ACTAAACTCGAGATAGTTAT+AGG + chr2.1:13194376-13194395 None:intergenic 30.0%
AGATAAGTGAATCAACTGTT+AGG - chr2.1:13193869-13193888 MS.gene35864:intron 30.0%
ATCTTCATATCTTCTGATAC+AGG + chr2.1:13193853-13193872 None:intergenic 30.0%
ATTATCATCCGCTTTGTAAT+TGG - chr2.1:13194305-13194324 MS.gene35864:CDS 30.0%
CATATTTCCATAAATTCTCG+TGG + chr2.1:13194897-13194916 None:intergenic 30.0%
GTTATATGTAACTCACTGTA+TGG + chr2.1:13193679-13193698 None:intergenic 30.0%
TCATAAGTAAGAGGAAAAAG+TGG + chr2.1:13195369-13195388 None:intergenic 30.0%
TGAGAAAAGAAAGAAGTTAG+AGG - chr2.1:13194271-13194290 MS.gene35864:CDS 30.0%
TTGAAACTATAGAGATGAGA+TGG + chr2.1:13194342-13194361 None:intergenic 30.0%
TTGTCTTTGCTGATAATTCA+AGG + chr2.1:13194735-13194754 None:intergenic 30.0%
TTTGTTTCCACGAGAATTTA+TGG - chr2.1:13194887-13194906 MS.gene35864:intron 30.0%
! AATCTATTTTCAGCAACACT+CGG - chr2.1:13195031-13195050 MS.gene35864:intron 30.0%
!! GTATGATCCTATTGATTTGA+AGG - chr2.1:13194644-13194663 MS.gene35864:intron 30.0%
!!! AATTTGTGTTTTGATTGTGC+AGG - chr2.1:13194693-13194712 MS.gene35864:intron 30.0%
AAAATTCTTGCAGAGGAGTA+AGG - chr2.1:13195223-13195242 MS.gene35864:intron 35.0%
AAAGAAGTTAGAGGAAGAGA+AGG - chr2.1:13194280-13194299 MS.gene35864:CDS 35.0%
AAAGTGTGCACAAGAATAGA+AGG + chr2.1:13194212-13194231 None:intergenic 35.0%
AAGAAGTTAGAGGAAGAGAA+GGG - chr2.1:13194281-13194300 MS.gene35864:CDS 35.0%
AAGTGATCATTACCAATCTC+AGG + chr2.1:13194604-13194623 None:intergenic 35.0%
ACATGTCAAAATTCTTGCAG+AGG - chr2.1:13195216-13195235 MS.gene35864:intron 35.0%
CTTTCCTCCTTCAAATCAAT+AGG + chr2.1:13194654-13194673 None:intergenic 35.0%
GAACCAGAATACTGGAAATT+TGG - chr2.1:13195252-13195271 MS.gene35864:CDS 35.0%
GCAAATGAGGATGTTTCATT+AGG - chr2.1:13195460-13195479 MS.gene35864:intron 35.0%
TCACCAAATTTCCAGTATTC+TGG + chr2.1:13195258-13195277 None:intergenic 35.0%
TCATTAGGAGCTTGGTTTAT+TGG - chr2.1:13195475-13195494 MS.gene35864:intron 35.0%
TCTTCACAAGTATGCAAATG+AGG - chr2.1:13195447-13195466 MS.gene35864:intron 35.0%
TCTTCTTTAGTTGCAAGAGA+AGG - chr2.1:13193611-13193630 MS.gene35864:intron 35.0%
TGATCGAATTATGAACCTTG+TGG + chr2.1:13193976-13193995 None:intergenic 35.0%
! ACTTAAAACCCAACTTGCTT+GGG - chr2.1:13195758-13195777 MS.gene35864:CDS 35.0%
!! AGAAGGTACCTAATGGTTAT+AGG - chr2.1:13193892-13193911 MS.gene35864:intron 35.0%
!! ATTTCCAGTATTCTGGTTCA+TGG + chr2.1:13195251-13195270 None:intergenic 35.0%
!! CATGTGTTGCTTCATTTGAT+TGG - chr2.1:13196005-13196024 MS.gene35864:intron 35.0%
!! TGATCCTATTGATTTGAAGG+AGG - chr2.1:13194647-13194666 MS.gene35864:intron 35.0%
!! TTGGTTTATTGGTCTTGATG+TGG - chr2.1:13195486-13195505 MS.gene35864:intron 35.0%
ACATGGAGATTTCCTGAGAT+TGG - chr2.1:13194589-13194608 MS.gene35864:intron 40.0%
ACCCATGACCAATTACAAAG+CGG + chr2.1:13194316-13194335 None:intergenic 40.0%
ACTTAAACCCCAAGCAAGTT+GGG + chr2.1:13195769-13195788 None:intergenic 40.0%
AGCCCTTAGGAATGTATTGA+CGG + chr2.1:13195616-13195635 None:intergenic 40.0%
AGGATGTTTCATTAGGAGCT+TGG - chr2.1:13195467-13195486 MS.gene35864:intron 40.0%
ATCCGCTTTGTAATTGGTCA+TGG - chr2.1:13194311-13194330 MS.gene35864:intron 40.0%
ATTGTGCAGGATCATGTTGA+AGG - chr2.1:13194706-13194725 MS.gene35864:intron 40.0%
CCTTGAGAATGATCCAAAAG+GGG + chr2.1:13195826-13195845 None:intergenic 40.0%
GACCGTCAATACATTCCTAA+GGG - chr2.1:13195611-13195630 MS.gene35864:CDS 40.0%
GAGGCAGAAGATAGTAAACA+TGG - chr2.1:13194572-13194591 MS.gene35864:intron 40.0%
GCAAAACCACGAGTATACAT+CGG - chr2.1:13195076-13195095 MS.gene35864:intron 40.0%
GCCTTGAGAATGATCCAAAA+GGG + chr2.1:13195827-13195846 None:intergenic 40.0%
GGACTTTGTGTGTATGTGTT+AGG - chr2.1:13195419-13195438 MS.gene35864:intron 40.0%
GGGTATTTATAGCGCTTTGT+GGG + chr2.1:13195806-13195825 None:intergenic 40.0%
GTCCACAAAAAATGTGGAGA+AGG - chr2.1:13196070-13196089 MS.gene35864:CDS 40.0%
GTGAATCAACTGTTAGGAGA+AGG - chr2.1:13193875-13193894 MS.gene35864:intron 40.0%
GTTAACAGCAGTAGCAAAGT+AGG + chr2.1:13194761-13194780 None:intergenic 40.0%
TACATCGGATGCATGAAATC+TGG - chr2.1:13195091-13195110 MS.gene35864:intron 40.0%
TATCCTAGATCGAGCTATTG+AGG - chr2.1:13194553-13194572 MS.gene35864:intron 40.0%
TCATGCAGATTGTGAATGGA+AGG - chr2.1:13195967-13195986 MS.gene35864:intron 40.0%
TCATTTGATTGGACATGCAG+TGG - chr2.1:13196016-13196035 MS.gene35864:intron 40.0%
TCCATCATGCAGATTGTGAA+TGG - chr2.1:13195963-13195982 MS.gene35864:intron 40.0%
TCCATTCACAATCTGCATGA+TGG + chr2.1:13195967-13195986 None:intergenic 40.0%
TCCGCTTTGTAATTGGTCAT+GGG - chr2.1:13194312-13194331 MS.gene35864:intron 40.0%
TCTAGATTGCTAGCTAGTTG+AGG + chr2.1:13195715-13195734 None:intergenic 40.0%
TGCCTTGAGAATGATCCAAA+AGG + chr2.1:13195828-13195847 None:intergenic 40.0%
TGGACTATTCCTGAACCTAA+AGG - chr2.1:13193446-13193465 MS.gene35864:CDS 40.0%
TTGATTCTCTGGTGACATCT+TGG - chr2.1:13194240-13194259 MS.gene35864:CDS 40.0%
! AGCGCTATAAATACCCCTTT+TGG - chr2.1:13195810-13195829 MS.gene35864:intron 40.0%
! CTTAAAACCCAACTTGCTTG+GGG - chr2.1:13195759-13195778 MS.gene35864:CDS 40.0%
! GACTTAAAACCCAACTTGCT+TGG - chr2.1:13195757-13195776 MS.gene35864:CDS 40.0%
! GCTCAAGAGTCTCTAAAAAG+TGG - chr2.1:13193823-13193842 MS.gene35864:intron 40.0%
! TACTGGAAATTTGGTGAGAC+AGG - chr2.1:13195261-13195280 MS.gene35864:CDS 40.0%
! TTGCTACTGCTGTTAACTTG+TGG - chr2.1:13194764-13194783 MS.gene35864:CDS 40.0%
! TTTGTGGAGTGCTTCTTTCT+AGG - chr2.1:13196102-13196121 MS.gene35864:CDS 40.0%
!! TCTCACTTTTGAGCAAGAAC+CGG + chr2.1:13195118-13195137 None:intergenic 40.0%
!! TGCTACTGCTGTTAACTTGT+GGG - chr2.1:13194765-13194784 MS.gene35864:CDS 40.0%
!! TGTTAGGAGAAGGTACCTAA+TGG - chr2.1:13193885-13193904 MS.gene35864:intron 40.0%
!!! CACCTTCTCCACATTTTTTG+TGG + chr2.1:13196075-13196094 None:intergenic 40.0%
AAGTACTTTCGTCATGCGAC+AGG - chr2.1:13195288-13195307 MS.gene35864:intron 45.0%
AGACTATGCTGTGGTACAAC+AGG - chr2.1:13195526-13195545 MS.gene35864:intron 45.0%
AGATTGCTAGCTAGTTGAGG+AGG + chr2.1:13195712-13195731 None:intergenic 45.0%
ATGCATCCGATGTATACTCG+TGG + chr2.1:13195085-13195104 None:intergenic 45.0%
CTGGTGACATCTTGGAAAAC+AGG - chr2.1:13194248-13194267 MS.gene35864:CDS 45.0%
GACTTAAACCCCAAGCAAGT+TGG + chr2.1:13195770-13195789 None:intergenic 45.0%
GAGAAGGTGAGAAAGCTTTG+TGG - chr2.1:13196086-13196105 MS.gene35864:CDS 45.0%
GATGATCGTAGACTATGCTG+TGG - chr2.1:13195517-13195536 MS.gene35864:intron 45.0%
GGACATGCAGTGGAATTTGT+AGG - chr2.1:13196026-13196045 MS.gene35864:intron 45.0%
GGACCGTCAATACATTCCTA+AGG - chr2.1:13195610-13195629 MS.gene35864:CDS 45.0%
GGTACCATGAACCAGAATAC+TGG - chr2.1:13195244-13195263 MS.gene35864:CDS 45.0%
TTGTGAATGGAAGGCTCAAG+CGG - chr2.1:13195976-13195995 MS.gene35864:intron 45.0%
! AATGCCCTCTAGAAAGGCTT+AGG - chr2.1:13195638-13195657 MS.gene35864:CDS 45.0%
! CCCCTTTTGGATCATTCTCA+AGG - chr2.1:13195823-13195842 MS.gene35864:intron 45.0%
! GGGGTATTTATAGCGCTTTG+TGG + chr2.1:13195807-13195826 None:intergenic 45.0%
ACTTGCGAGGACAACAGCAA+TGG - chr2.1:13193469-13193488 MS.gene35864:CDS 50.0%
CGGATGCATGAAATCTGGAC+CGG - chr2.1:13195096-13195115 MS.gene35864:intron 50.0%
CTGAACCTAAAGGACTTGCG+AGG - chr2.1:13193456-13193475 MS.gene35864:CDS 50.0%
CTGCCTCAATAGCTCGATCT+AGG + chr2.1:13194559-13194578 None:intergenic 50.0%
GAAGTGAAGCGCGATACGAA+AGG - chr2.1:13193633-13193652 MS.gene35864:intron 50.0%
GTTGTCCTCGCAAGTCCTTT+AGG + chr2.1:13193464-13193483 None:intergenic 50.0%
TGAACCTTGTGGCATCCAAG+TGG + chr2.1:13193965-13193984 None:intergenic 50.0%
TGTGAATGGAAGGCTCAAGC+GGG - chr2.1:13195977-13195996 MS.gene35864:intron 50.0%
! ATCTAGGATACCACCTGTCG+TGG + chr2.1:13194543-13194562 None:intergenic 50.0%
! CTCGCAAGTCCTTTAGGTTC+AGG + chr2.1:13193458-13193477 None:intergenic 50.0%
CCTGTCGTGGCACTAGAGAA+AGG + chr2.1:13194530-13194549 None:intergenic 55.0%
CCTTTCTCTAGTGCCACGAC+AGG - chr2.1:13194527-13194546 MS.gene35864:intron 55.0%
GGCGCCTAAGCCTTTCTAGA+GGG + chr2.1:13195645-13195664 None:intergenic 55.0%
TTCTCTAGTGCCACGACAGG+TGG - chr2.1:13194530-13194549 MS.gene35864:intron 55.0%
! GGCTCGAATGCCCTCTAGAA+AGG - chr2.1:13195632-13195651 MS.gene35864:CDS 55.0%
!! TAGAGGGCATTCGAGCCCTT+AGG + chr2.1:13195629-13195648 None:intergenic 55.0%
CAGAAGGGCTCCTGAGGCAT+AGG - chr2.1:13195668-13195687 MS.gene35864:CDS 60.0%
CTATGCCTCAGGAGCCCTTC+TGG + chr2.1:13195670-13195689 None:intergenic 60.0%
GAGATTCCGTTCGCGCCACT+TGG - chr2.1:13193947-13193966 MS.gene35864:intron 60.0%
GGGCGCCTAAGCCTTTCTAG+AGG + chr2.1:13195646-13195665 None:intergenic 60.0%
TGGCATCCAAGTGGCGCGAA+CGG + chr2.1:13193956-13193975 None:intergenic 60.0%
!! TTGAGGAGGCGCCTCTGGAA+GGG + chr2.1:13195698-13195717 None:intergenic 60.0%
AGGCTTAGGCGCCCTCCAGA+AGG - chr2.1:13195652-13195671 MS.gene35864:CDS 65.0%
CGCGCCACTTGGATGCCACA+AGG - chr2.1:13193958-13193977 MS.gene35864:intron 65.0%
GCCTCAGGAGCCCTTCTGGA+GGG + chr2.1:13195666-13195685 None:intergenic 65.0%
GGCTTAGGCGCCCTCCAGAA+GGG - chr2.1:13195653-13195672 MS.gene35864:CDS 65.0%
TGCCTCAGGAGCCCTTCTGG+AGG + chr2.1:13195667-13195686 None:intergenic 65.0%
!! GCTAGTTGAGGAGGCGCCTC+TGG + chr2.1:13195703-13195722 None:intergenic 65.0%
!! GTTGAGGAGGCGCCTCTGGA+AGG + chr2.1:13195699-13195718 None:intergenic 65.0%
GCATAGGCGCGCCCTTCCAG+AGG - chr2.1:13195684-13195703 MS.gene35864:CDS 70.0%
GCCCTCCAGAAGGGCTCCTG+AGG - chr2.1:13195662-13195681 MS.gene35864:CDS 70.0%
! GAAGGGCGCGCCTATGCCTC+AGG + chr2.1:13195681-13195700 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 13193442 13196123 13193442 ID=MS.gene35864
chr2.1 mRNA 13193442 13196123 13193442 ID=MS.gene35864.t1;Parent=MS.gene35864
chr2.1 exon 13196027 13196123 13196027 ID=MS.gene35864.t1.exon1;Parent=MS.gene35864.t1
chr2.1 CDS 13196027 13196123 13196027 ID=cds.MS.gene35864.t1;Parent=MS.gene35864.t1
chr2.1 exon 13195883 13195944 13195883 ID=MS.gene35864.t1.exon2;Parent=MS.gene35864.t1
chr2.1 CDS 13195883 13195944 13195883 ID=cds.MS.gene35864.t1;Parent=MS.gene35864.t1
chr2.1 exon 13195586 13195797 13195586 ID=MS.gene35864.t1.exon3;Parent=MS.gene35864.t1
chr2.1 CDS 13195586 13195797 13195586 ID=cds.MS.gene35864.t1;Parent=MS.gene35864.t1
chr2.1 exon 13195232 13195295 13195232 ID=MS.gene35864.t1.exon4;Parent=MS.gene35864.t1
chr2.1 CDS 13195232 13195295 13195232 ID=cds.MS.gene35864.t1;Parent=MS.gene35864.t1
chr2.1 exon 13194955 13195027 13194955 ID=MS.gene35864.t1.exon5;Parent=MS.gene35864.t1
chr2.1 CDS 13194955 13195027 13194955 ID=cds.MS.gene35864.t1;Parent=MS.gene35864.t1
chr2.1 exon 13194730 13194850 13194730 ID=MS.gene35864.t1.exon6;Parent=MS.gene35864.t1
chr2.1 CDS 13194730 13194850 13194730 ID=cds.MS.gene35864.t1;Parent=MS.gene35864.t1
chr2.1 exon 13194434 13194521 13194434 ID=MS.gene35864.t1.exon7;Parent=MS.gene35864.t1
chr2.1 CDS 13194434 13194521 13194434 ID=cds.MS.gene35864.t1;Parent=MS.gene35864.t1
chr2.1 exon 13194204 13194329 13194204 ID=MS.gene35864.t1.exon8;Parent=MS.gene35864.t1
chr2.1 CDS 13194204 13194329 13194204 ID=cds.MS.gene35864.t1;Parent=MS.gene35864.t1
chr2.1 exon 13194018 13194124 13194018 ID=MS.gene35864.t1.exon9;Parent=MS.gene35864.t1
chr2.1 CDS 13194018 13194124 13194018 ID=cds.MS.gene35864.t1;Parent=MS.gene35864.t1
chr2.1 exon 13193442 13193590 13193442 ID=MS.gene35864.t1.exon10;Parent=MS.gene35864.t1
chr2.1 CDS 13193442 13193590 13193442 ID=cds.MS.gene35864.t1;Parent=MS.gene35864.t1
Gene Sequence

>MS.gene35864

GATGTGGACTATTCCTGAACCTAAAGGACTTGCGAGGACAACAGCAATGGAATCTGAACAATTAAATTTAGTTACAGAGGGTTGTAATACAAGAATTGTAAGCACTGTTACTTTTAATTCAATGTTTCACGTATCATATGAAATTTTTGTATTTTTAATTTTATGTTTGTCTTCTTTAGTTGCAAGAGAAGGAAGTGAAGCGCGATACGAAAGGCGTTTTCAAGACACAAAAAACCATACAGTGAGTTACATATAACATGATCTTGTTTATCATTTTTGTTTGTGTTATTTTGCATACTAAACAAGTGAAATTGTGTTGAATGTAGAAACTTAGACAAGACTATTTCAAATTTGGAAATGGAACTAGCTTCTGCTAAAGCAGCTCAAGAGTCTCTAAAAAGTGGTGCTCCTGTATCAGAAGATATGAAGATAAGTGAATCAACTGTTAGGAGAAGGTACCTAATGGTTATAGGAATTAACACTGCTTTTAGCAGCAGAAAAAGAAGAGATTCCGTTCGCGCCACTTGGATGCCACAAGGTTCATAATTCGATCATCGCTTCCTTATATTTTTGAGTTTAATAACTATTCACCGATAACATTTTACACATACGTCCATTCATATATTACCATCTTATCATATCATACTATTACTTATCGAAAATTGTTTACGATGTGTGATAAGATCGTAAAATATGACTGAAGAACTATATAAAACATGTTTGTTCTATGTGAATGTATTGTTCTTAAACTGTTTTTCTATTGTATTCCTTCTATTCTTGTGCACACTTTATAAACTATTGATTCTCTGGTGACATCTTGGAAAACAGGTGAGAAAAGAAAGAAGTTAGAGGAAGAGAAGGGCATTATCATCCGCTTTGTAATTGGTCATGGGTAAGCCATCTCATCTCTATAGTTTCAACGATTTTAGCTCCTATAACTATCTCGAGTTTAGTTTCTACTTTTAAGTTTGTAAATTGCAAAACTAACTAAAAGCGCGCAGTTTTATAACTTGTATGAACTAAAATGCGAGTTCAAGATACTTAAAAATTTATTTTGAATGATTTAATAAATTTATTTTTTTACTCCTTTCTCTAGTGCCACGACAGGTGGTATCCTAGATCGAGCTATTGAGGCAGAAGATAGTAAACATGGAGATTTCCTGAGATTGGTAATGATCACTTGAATAACATTTGACAATATAGTATGATCCTATTGATTTGAAGGAGGAAAGAAAAGACAACAAGTTTTCAAATTTGTGTTTTGATTGTGCAGGATCATGTTGAAGGATACCTTGAATTATCAGCAAAGACAAAAACCTACTTTGCTACTGCTGTTAACTTGTGGGATGCTGACTTCTACATAAAAGTTGATGATGATGTTCATGTAAATATAGGTATAAAATGTTACTCAATTCTCAAGCTATTTTTTATATAAGCTATATAGGTTTGTTTCCACGAGAATTTATGGAAATATGCTGAAATTTGCTTACAAACATGTCATAAGCCGTTTCTATAATCTCTTCGAAAGAGTTATGTTGAATCATGTCATCATTTTAATACAAATATAAGTTTGTCTTAGTATCCAATTCAATCTATTTTCAGCAACACTCGGAGAAACTCTAATTAGACATCGAGCAAAACCACGAGTATACATCGGATGCATGAAATCTGGACCGGTTCTTGCTCAAAAGTGAGAACTATTTTCCTTTATCCATCTTTTTATTTAACAAAAGAGTTGTAAATTTGAGACATTTCACTTCTAGCTTCTTACATTACATGTCAAAATTCTTGCAGAGGAGTAAGGTACCATGAACCAGAATACTGGAAATTTGGTGAGACAGGAAACAAGTACTTTCGTCATGCGACAGGACAATTGTATGTTGTTTCAAAAGATCTTGCTACATACATTGCAACAAACAAGTAACCACTTTTTCCTCTTACTTATGAAGTAAAAAATATAATTGAAGTGAAATTAATGGACTTTGTGTGTATGTGTTAGGAATGTTCTTCACAAGTATGCAAATGAGGATGTTTCATTAGGAGCTTGGTTTATTGGTCTTGATGTGGAACACATAGATGATCGTAGACTATGCTGTGGTACAACAGGTGAAAATCTTTTCCTATATTAATAGATGATTGATTCATATATACAAATAAAAATTATATCTGGACCGTCAATACATTCCTAAGGGCTCGAATGCCCTCTAGAAAGGCTTAGGCGCCCTCCAGAAGGGCTCCTGAGGCATAGGCGCGCCCTTCCAGAGGCGCCTCCTCAACTAGCTAGCAATCTAGAAGCATATAGAGCTTAGTAAAAAGACTTAAAACCCAACTTGCTTGGGGTTTAAGTCGCGTAAAAACAAGCCCACAAAGCGCTATAAATACCCCTTTTGGATCATTCTCAAGGCATCTCATAAACAGTTTAAACCCTAAATTCTATTATTGTACTCACTGCAAGTACAATATCCTATAAATCTTTATTTGTTTTATAAGTTGTGATAATAATTTTAAATTCTTGAATTGGTCCATCATGCAGATTGTGAATGGAAGGCTCAAGCGGGCAATGCATGTGTTGCTTCATTTGATTGGACATGCAGTGGAATTTGTAGGTCTGCTGAAAGAATTAAAGAAGTCCACAAAAAATGTGGAGAAGGTGAGAAAGCTTTGTGGAGTGCTTCTTTCTAG

Protein sequence

>MS.gene35864.t1

DVDYSUTURTCEDNSNGIUTIKFSYRGLUYKNFAREGSEARYERRFQDTKNHTKLRQDYFKFGNGTSFCUSSSRVSKKWCSCIRRYEDKUINCUEKVPNGYRNUHCFUQQKKKRFRSRHLDATRUEKKEVRGREGHYHPLCNWSWCHDRWYPRSSYUGRRUUTWRFPEIGSCURIPUIISKDKNLLCYCCULVGCULLHKSUUUCSCKYSNTRRNSNUTSSKTTSIHRMHEIWTGSCSKRSKVPUTRILEIWUDRKQVLSSCDRTIVCCFKRSCYIHCNKQECSSQVCKUGCFIRSLVYWSUCGTHRUSUTMLWYNRLUMEGSSGQCMCCFIULDMQWNLUVCUKNURSPQKMWRRUESFVECFFL