AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05526

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05526.t1 MTR_6g086340 97.400 500 12 1 1 499 1 500 0.0 1001
MS.gene05526.t1 MTR_6g086300 81.800 489 89 0 11 499 14 502 0.0 829
MS.gene05526.t1 MTR_6g086300 81.800 489 89 0 11 499 14 502 0.0 829
MS.gene05526.t1 MTR_8g083530 76.986 491 113 0 9 499 13 503 0.0 802
MS.gene05526.t1 MTR_8g083520 75.103 486 88 1 14 499 9 461 0.0 769
MS.gene05526.t1 MTR_8g083520 74.638 414 72 1 86 499 1 381 0.0 649
MS.gene05526.t1 MTR_4g107040 55.052 485 218 0 15 499 60 544 0.0 574
MS.gene05526.t1 MTR_3g078170 55.785 484 214 0 16 499 59 542 0.0 571
MS.gene05526.t1 MTR_8g064170 55.579 484 215 0 16 499 58 541 0.0 568
MS.gene05526.t1 MTR_8g083530 74.551 334 85 0 9 342 13 346 0.0 528
MS.gene05526.t1 MTR_8g064170 51.653 484 202 1 16 499 58 509 0.0 517
MS.gene05526.t1 MTR_3g078170 54.523 398 181 0 16 413 59 456 3.01e-157 455
MS.gene05526.t1 MTR_3g078170 54.155 373 171 0 16 388 59 431 5.02e-145 423
MS.gene05526.t1 MTR_3g078170 54.155 373 171 0 16 388 59 431 9.99e-145 422
MS.gene05526.t1 MTR_3g078550 41.176 493 279 5 15 498 4 494 3.87e-121 364
MS.gene05526.t1 MTR_4g106510 41.734 496 270 7 16 498 5 494 1.24e-118 358
MS.gene05526.t1 MTR_3g078490 40.286 489 281 5 19 498 38 524 2.69e-117 355
MS.gene05526.t1 MTR_3g078550 42.140 458 254 5 50 498 9 464 1.77e-113 343
MS.gene05526.t1 MTR_2g067660 35.729 487 307 5 4 489 33 514 2.71e-101 314
MS.gene05526.t1 MTR_1690s0010 41.040 346 197 5 19 361 9 350 1.25e-76 244
MS.gene05526.t1 MTR_3g078490 39.286 336 195 4 19 347 8 341 1.01e-67 222
MS.gene05526.t1 MTR_2g009750 31.733 479 307 11 22 489 18 487 5.74e-58 200
MS.gene05526.t1 MTR_4g093170 31.942 479 306 11 22 489 45 514 1.38e-57 200
MS.gene05526.t1 MTR_2g009750 31.288 489 311 12 11 489 13 486 1.99e-57 199
MS.gene05526.t1 MTR_2g009750 31.590 478 308 11 22 489 17 485 2.14e-57 199
MS.gene05526.t1 MTR_2g034160 28.753 473 315 10 32 489 62 527 6.69e-57 199
MS.gene05526.t1 MTR_4g131180 29.569 487 320 10 20 497 17 489 3.40e-56 195
MS.gene05526.t1 MTR_1g014320 28.807 486 322 10 22 494 19 493 6.89e-56 194
MS.gene05526.t1 MTR_4g131180 29.705 441 291 8 20 452 17 446 1.13e-53 188
MS.gene05526.t1 MTR_2g042330 27.950 483 331 12 22 496 25 498 3.08e-52 185
MS.gene05526.t1 MTR_1399s0020 27.224 371 218 4 119 487 15 335 2.48e-33 129
MS.gene05526.t1 MTR_8g076480 30.117 342 225 10 153 489 106 438 8.17e-30 122
MS.gene05526.t1 MTR_2g097950 27.896 423 270 16 91 494 51 457 1.17e-27 116
MS.gene05526.t1 MTR_8g094600 25.806 496 328 17 19 496 32 505 3.18e-27 115
MS.gene05526.t1 MTR_1g029840 27.649 387 256 13 109 489 77 445 1.87e-26 112
MS.gene05526.t1 MTR_1g029840 27.649 387 256 13 109 489 77 445 2.59e-26 112
MS.gene05526.t1 MTR_1222s0010 30.530 321 190 15 155 460 105 407 5.29e-26 112
MS.gene05526.t1 MTR_1314s0010 27.954 347 228 9 156 490 1 337 1.19e-24 105
MS.gene05526.t1 MTR_3g088150 26.923 338 237 8 155 489 117 447 4.17e-24 105
MS.gene05526.t1 MTR_2g097950 27.273 418 244 16 91 494 51 422 1.93e-23 103
MS.gene05526.t1 MTR_4g065040 27.687 307 201 9 155 452 104 398 1.08e-18 89.4
MS.gene05526.t1 MTR_0002s0820 44.211 95 45 2 218 304 58 152 1.21e-13 69.3
MS.gene05526.t1 MTR_1g071870 70.732 41 12 0 441 481 227 267 3.50e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05526.t1 AT3G24503 69.592 490 148 1 11 499 12 501 0.0 729
MS.gene05526.t1 AT3G48000 55.372 484 216 0 16 499 55 538 0.0 575
MS.gene05526.t1 AT1G23800 55.372 484 216 0 16 499 51 534 0.0 565
MS.gene05526.t1 AT3G48170 43.461 497 262 8 15 498 4 494 5.04e-138 407
MS.gene05526.t1 AT1G74920 42.600 500 267 7 11 498 3 494 1.04e-132 394
MS.gene05526.t1 AT1G74920 42.400 500 263 8 11 498 3 489 1.23e-130 389
MS.gene05526.t1 AT1G23800 53.754 333 154 0 16 348 51 383 7.01e-124 368
MS.gene05526.t1 AT1G79440 37.527 469 288 4 22 489 56 520 2.19e-99 309
MS.gene05526.t1 AT2G14170 32.985 479 301 11 22 489 8 477 6.35e-63 213
MS.gene05526.t1 AT2G14170 32.985 479 301 11 22 489 117 586 8.18e-62 213
MS.gene05526.t1 AT2G14170 33.713 439 274 9 22 452 117 546 2.75e-61 211
MS.gene05526.t1 AT2G24270 30.572 507 312 13 10 495 7 494 1.32e-58 202
MS.gene05526.t1 AT2G24270 30.572 507 312 13 10 495 7 494 1.47e-58 201
MS.gene05526.t1 AT2G24270 30.572 507 312 13 10 495 7 494 1.47e-58 201
MS.gene05526.t1 AT2G24270 30.572 507 312 13 10 495 47 534 3.59e-58 201
MS.gene05526.t1 AT3G66658 29.114 474 312 11 32 489 62 527 4.78e-54 191
MS.gene05526.t1 AT3G66658 29.114 474 312 11 32 489 62 527 7.73e-54 191
MS.gene05526.t1 AT1G54100 28.601 479 315 13 32 496 32 497 3.20e-53 187
MS.gene05526.t1 AT1G54100 28.601 479 315 13 32 496 32 497 3.20e-53 187
MS.gene05526.t1 AT1G44170 30.303 330 210 11 155 476 48 365 1.99e-29 120
MS.gene05526.t1 AT1G44170 29.738 343 221 11 155 489 111 441 2.90e-29 120
MS.gene05526.t1 AT1G44170 29.738 343 221 11 155 489 111 441 2.90e-29 120
MS.gene05526.t1 AT4G34240 28.916 332 212 11 155 476 32 349 1.56e-23 103
MS.gene05526.t1 AT4G36250 25.850 441 296 15 52 476 2 427 1.77e-23 103
MS.gene05526.t1 AT4G34240 28.916 332 212 11 155 476 174 491 6.37e-23 102
MS.gene05526.t1 AT4G34240 28.916 332 212 11 155 476 159 476 7.58e-23 102
MS.gene05526.t1 AT4G34240 36.424 151 85 6 155 301 174 317 6.30e-11 64.7

Find 109 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTAGCTTCTGCTATTT+TGG 0.126135 6.2:-84630720 None:intergenic
CCTCTTGGTTCTGCTCAATT+AGG 0.146809 6.2:-84632000 None:intergenic
GTAATCACTTCTTCTGTTCT+TGG 0.154923 6.2:-84630698 None:intergenic
TTTGATATTGATTGCCCTTT+TGG 0.202054 6.2:+84634650 MS.gene05526:CDS
TGGGGTCCTTGTTGAACTTT+AGG 0.227903 6.2:-84633655 None:intergenic
CCCTGCTGCTAAGCCATATT+TGG 0.239067 6.2:-84634543 None:intergenic
GCTGTTGATCTTGCTCTATT+TGG 0.241282 6.2:+84633422 MS.gene05526:CDS
CTCTTGGTTCTGCTCAATTA+GGG 0.242841 6.2:-84631999 None:intergenic
AGGGATTGTGACAAAGAATT+TGG 0.263862 6.2:+84634562 MS.gene05526:CDS
ATTCATCGTAAATCCCTTCT+TGG 0.275084 6.2:-84633576 None:intergenic
ATAGCACAAGATGAAATATT+TGG 0.277460 6.2:+84634073 MS.gene05526:CDS
TGAAATATTTGGACCTGTTA+TGG 0.283168 6.2:+84634084 MS.gene05526:CDS
AAGCCGGTATCACTTGAATT+AGG 0.284307 6.2:+84633353 MS.gene05526:CDS
AGTGGATATGGAAGAGATTA+TGG 0.289197 6.2:+84634686 MS.gene05526:CDS
AGCAATATCAACATCTTCTT+TGG 0.291243 6.2:-84630738 None:intergenic
ATAGGAGAGAGCAAAGATTA+TGG 0.291747 6.2:+84631964 MS.gene05526:intron
GAATTCGTGGACTCAGTTTC+AGG 0.291763 6.2:+84629776 MS.gene05526:CDS
CACTTCTCCATGAACTTTAT+CGG 0.292029 6.2:-84632128 None:intergenic
ATTCTTTCCATGTTTAATAT+AGG 0.304720 6.2:-84633857 None:intergenic
GAGAAGTGTTCAAAACTTCT+AGG 0.308999 6.2:+84632143 MS.gene05526:CDS
TGCTAAGGCTGCTCCTTGTT+TGG 0.309023 6.2:+84632249 MS.gene05526:CDS
TTTGGCTGCTGGTTGTACTA+TGG 0.321522 6.2:+84632267 MS.gene05526:CDS
GGGTATAAGATGAGTGGATA+TGG 0.326692 6.2:+84634674 MS.gene05526:CDS
AAGGCCAACAATACCAAATA+TGG 0.331879 6.2:+84634530 MS.gene05526:CDS
ATTTGGTATCCTACACAATA+AGG 0.342928 6.2:+84633439 MS.gene05526:CDS
GAAGGAGCCACATTATTAAC+TGG 0.343248 6.2:+84633880 MS.gene05526:CDS
TAAGCCATATTTGGTATTGT+TGG 0.347953 6.2:-84634534 None:intergenic
CATTACTCGTCGGCCTGTTT+CGG 0.348977 6.2:-84633306 None:intergenic
CGTAGGATATTGGCTGCTTC+AGG 0.356504 6.2:-84632088 None:intergenic
CTCAATGTACTGCCAGGATT+TGG 0.358680 6.2:+84633118 MS.gene05526:CDS
AACTGTTATGTTCTTTGCTA+AGG 0.366049 6.2:+84632234 MS.gene05526:CDS
GAGCAAAGATTATGGTGAAA+TGG 0.367613 6.2:+84631972 MS.gene05526:CDS
CTTCTTAATTCCTTCCTCAA+TGG 0.367868 6.2:-84634510 None:intergenic
TTTACAGGTTCAACCGAAAC+AGG 0.372506 6.2:+84633293 MS.gene05526:CDS
CAATTCGTGCAGGTATCATT+TGG 0.382886 6.2:+84634609 MS.gene05526:CDS
CCAGGATTTGGTTCAACTGC+TGG 0.389889 6.2:+84633130 MS.gene05526:CDS
GAGAGAGGTGTTTGCTCAGC+AGG 0.397287 6.2:-84632298 None:intergenic
GCTGCTCCTTGTTTGGCTGC+TGG 0.401272 6.2:+84632256 MS.gene05526:CDS
CCAATGCTGCTATTTCCTCT+TGG 0.405103 6.2:-84632015 None:intergenic
GGCATAGTAACGTAGGATAT+TGG 0.407458 6.2:-84632098 None:intergenic
ATGGAACCTATTGGTGTTGT+TGG 0.410360 6.2:+84632187 MS.gene05526:CDS
AGCCATGGAGAATTGTAAAT+AGG 0.411898 6.2:-84634755 None:intergenic
ACCAAATATGGCTTAGCAGC+AGG 0.418744 6.2:+84634542 MS.gene05526:CDS
GCAAGAGAAGCATTTGATAA+TGG 0.419949 6.2:+84630770 MS.gene05526:CDS
TCTTCATATGTATACCTTGA+TGG 0.424173 6.2:+84632168 MS.gene05526:CDS
AGCAAAGATTATGGTGAAAT+GGG 0.429763 6.2:+84631973 MS.gene05526:CDS
AACTTAGAAAGTGCCATAAC+AGG 0.431254 6.2:-84634097 None:intergenic
ATGTGTCCAACAACACCAAT+AGG 0.433262 6.2:-84632193 None:intergenic
CTCATCTTATACCCTCCAAA+AGG 0.454556 6.2:-84634665 None:intergenic
CCAAGAGGAAATAGCAGCAT+TGG 0.454749 6.2:+84632015 MS.gene05526:CDS
CCTCCTAATTCAAGTGATAC+CGG 0.483272 6.2:-84633356 None:intergenic
CCAGCAGTTGAACCAAATCC+TGG 0.484916 6.2:-84633130 None:intergenic
GCATCATCGAAAATTAAAAC+AGG 0.485279 6.2:-84633386 None:intergenic
AGATGAAAGTTTCAAAGCCA+TGG 0.490561 6.2:-84634770 None:intergenic
GGTGCAGCCGATAAAGTTCA+TGG 0.492690 6.2:+84632121 MS.gene05526:CDS
ATATTGCAAACACTGTTTCA+AGG 0.493347 6.2:+84634585 MS.gene05526:CDS
GCAGCATTGGATACAATTGA+TGG 0.494635 6.2:+84632028 MS.gene05526:CDS
TGAGAAGAAAGTGCTGGAAA+AGG 0.495795 6.2:+84633600 MS.gene05526:CDS
TTTCATCAATGGAGAATTCG+TGG 0.498461 6.2:+84629763 MS.gene05526:CDS
AGTACATTGAGCACTCCATC+TGG 0.505876 6.2:-84633106 None:intergenic
ATTAAACATGGAAAGAATGA+AGG 0.512041 6.2:+84633862 MS.gene05526:CDS
GGTCCATGGCCACGTATGCC+TGG 0.518148 6.2:+84630791 MS.gene05526:CDS
AACAGGCCGACGAGTAATGC+AGG 0.523655 6.2:+84633310 MS.gene05526:CDS
ATCTAGGCTGGTATTCCAGA+TGG 0.526428 6.2:+84633091 MS.gene05526:intron
CTCCTATTTACAATTCTCCA+TGG 0.530023 6.2:+84634753 MS.gene05526:CDS
TGAATTTGAGAAGAAAGTGC+TGG 0.530067 6.2:+84633594 MS.gene05526:CDS
AAAATTATACCTTATTGTGT+AGG 0.532177 6.2:-84633448 None:intergenic
TAGCAAAGAACATAACAGTT+GGG 0.536617 6.2:-84632231 None:intergenic
ATTCTTTCCTATATTAAACA+TGG 0.538136 6.2:+84633850 MS.gene05526:CDS
ATATGGAAGAGATTATGGAT+TGG 0.550655 6.2:+84634691 MS.gene05526:CDS
TATACCTTGATGGAACCTAT+TGG 0.551777 6.2:+84632178 MS.gene05526:CDS
CCAAATATGGCTTAGCAGCA+GGG 0.551779 6.2:+84634543 MS.gene05526:CDS
TGTTGAACTTTAGGATCGAA+AGG 0.551857 6.2:-84633646 None:intergenic
GCACCAGGCATACGTGGCCA+TGG 0.554932 6.2:-84630794 None:intergenic
GGAGTGCTCAATGTACTGCC+AGG 0.556694 6.2:+84633112 MS.gene05526:CDS
GTTGAACTTTAGGATCGAAA+GGG 0.558232 6.2:-84633645 None:intergenic
AATATCCTACGTTACTATGC+CGG 0.563081 6.2:+84632100 MS.gene05526:CDS
GTTTCAAGGTCAATTCGTGC+AGG 0.564958 6.2:+84634599 MS.gene05526:CDS
AAAAGGGCAATCAATATCAA+AGG 0.565522 6.2:-84634648 None:intergenic
TTGTTGGACACATTATACCT+TGG 0.569907 6.2:+84632203 MS.gene05526:CDS
GTTGAAATATACCTTAACAT+TGG 0.572651 6.2:-84633953 None:intergenic
TAAATATTGAAGGACCATTG+AGG 0.573357 6.2:+84634496 MS.gene05526:intron
ATGAACTTTATCGGCTGCAC+CGG 0.573497 6.2:-84632119 None:intergenic
GGTAAGCAAGTGGGAAACAA+AGG 0.576032 6.2:+84633904 MS.gene05526:CDS
TTAGCAAAGAACATAACAGT+TGG 0.580072 6.2:-84632232 None:intergenic
AGATTTGAACTTACAGCACC+AGG 0.585736 6.2:-84630809 None:intergenic
TTTGGAGGGTATAAGATGAG+TGG 0.586902 6.2:+84634668 MS.gene05526:CDS
TCATCTTATACCCTCCAAAA+GGG 0.587155 6.2:-84634664 None:intergenic
AAGGAGCCACATTATTAACT+GGG 0.587465 6.2:+84633881 MS.gene05526:CDS
ATAACAGTTGGGAAATTCCA+AGG 0.594259 6.2:-84632220 None:intergenic
ATGGAGGGAAACTATACAGT+TGG 0.597500 6.2:+84632047 MS.gene05526:CDS
AGCAATCAGTAATTTGAAGC+CGG 0.598291 6.2:+84633337 MS.gene05526:CDS
CTGCAGCCTGCATTACTCGT+CGG 0.606495 6.2:-84633316 None:intergenic
CCGGTATCACTTGAATTAGG+AGG 0.607860 6.2:+84633356 MS.gene05526:CDS
TGCATCAATGTCTATATGTG+AGG 0.616811 6.2:-84633164 None:intergenic
TATTGAAGGACCATTGAGGA+AGG 0.617304 6.2:+84634500 MS.gene05526:intron
AACACCAATAGGTTCCATCA+AGG 0.617496 6.2:-84632182 None:intergenic
TATAGTTGGAATCTTTACAA+AGG 0.617841 6.2:-84629726 None:intergenic
CATTGAGGAAGGAATTAAGA+AGG 0.621050 6.2:+84634511 MS.gene05526:CDS
AAGCATTTGATAATGGTCCA+TGG 0.623184 6.2:+84630777 MS.gene05526:CDS
CTTACAGCACCAGGCATACG+TGG 0.623863 6.2:-84630800 None:intergenic
GCATTGGATACAATTGATGG+AGG 0.635584 6.2:+84632031 MS.gene05526:CDS
GTACAACCAGCAGCCAAACA+AGG 0.643727 6.2:-84632262 None:intergenic
CATTGGATACAATTGATGGA+GGG 0.663451 6.2:+84632032 MS.gene05526:CDS
TTCGATCCTAAAGTTCAACA+AGG 0.679226 6.2:+84633649 MS.gene05526:CDS
CCTAATTGAGCAGAACCAAG+AGG 0.679930 6.2:+84632000 MS.gene05526:CDS
CTGCACCGGCATAGTAACGT+AGG 0.699221 6.2:-84632105 None:intergenic
AGGAGCCACATTATTAACTG+GGG 0.700677 6.2:+84633882 MS.gene05526:CDS
GGAGCCACATTATTAACTGG+GGG 0.710041 6.2:+84633883 MS.gene05526:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATAAATGTAATCAA+AGG - chr6.2:84631097-84631116 None:intergenic 10.0%
!!! AAAATTTAAATTGACTTTTA+TGG + chr6.2:84630586-84630605 MS.gene05526:intron 10.0%
!!! ATAATTCTTTTTTTTTTTGA+GGG + chr6.2:84630185-84630204 MS.gene05526:intron 10.0%
!!! TAATCTTTAAACTTTTTTTT+TGG - chr6.2:84630132-84630151 None:intergenic 10.0%
!!! TATAATTCTTTTTTTTTTTG+AGG + chr6.2:84630184-84630203 MS.gene05526:intron 10.0%
!!! TTTTTTGTTGAAATAAAAAA+AGG + chr6.2:84630653-84630672 MS.gene05526:intron 10.0%
!! AATGTTGAATTAAATATTGA+AGG + chr6.2:84634486-84634505 MS.gene05526:intron 15.0%
!! ATATTTCATAAATTATTGCA+AGG + chr6.2:84631501-84631520 MS.gene05526:intron 15.0%
!! ATTTGAACAATAAATTTGAA+TGG - chr6.2:84631044-84631063 None:intergenic 15.0%
!! CAATATTTAATTCAACATTT+AGG - chr6.2:84634485-84634504 None:intergenic 15.0%
!! CTTACTTTATATATTTAGTT+AGG - chr6.2:84630093-84630112 None:intergenic 15.0%
!! TTAAAGAAAATTTATTGAGT+TGG + chr6.2:84632358-84632377 MS.gene05526:intron 15.0%
!!! AGAAAATTATATATTTCTAC+AGG - chr6.2:84631683-84631702 None:intergenic 15.0%
!!! ATCTTTTAAAACTAATTTCA+GGG - chr6.2:84634447-84634466 None:intergenic 15.0%
!!! ATGAATTATTTTTTGTCAAA+TGG - chr6.2:84630037-84630056 None:intergenic 15.0%
!!! GGAAATATAATTCTTTTATA+TGG + chr6.2:84630206-84630225 MS.gene05526:intron 15.0%
!!! TTTATTTTGAAAATTTGTGT+AGG + chr6.2:84634039-84634058 MS.gene05526:intron 15.0%
!! AAAATTATACCTTATTGTGT+AGG - chr6.2:84633451-84633470 None:intergenic 20.0%
!! AAAGGTTTAAAAGTAGAAAT+AGG - chr6.2:84633026-84633045 None:intergenic 20.0%
!! ACGAAAATTAAAAAGAATTG+AGG - chr6.2:84629831-84629850 None:intergenic 20.0%
!! ACTATTAGAAAAAATGACAT+TGG + chr6.2:84630467-84630486 MS.gene05526:intron 20.0%
!! AGAAAGACAAAAAATATGTA+AGG + chr6.2:84631640-84631659 MS.gene05526:intron 20.0%
!! ATTCTTTCCATGTTTAATAT+AGG - chr6.2:84633860-84633879 None:intergenic 20.0%
!! ATTCTTTCCTATATTAAACA+TGG + chr6.2:84633850-84633869 MS.gene05526:CDS 20.0%
!! GAAAATTACAAAGTTACTTA+AGG - chr6.2:84633519-84633538 None:intergenic 20.0%
!! TATTAAATAACTGATGTATC+TGG + chr6.2:84631135-84631154 MS.gene05526:intron 20.0%
!! TCAACTATCAAAATTCAATT+TGG + chr6.2:84630405-84630424 MS.gene05526:intron 20.0%
!! TGATATACTTATATGCATAT+TGG + chr6.2:84630629-84630648 MS.gene05526:intron 20.0%
!! TGTCAAATCATAGATATATA+GGG + chr6.2:84630530-84630549 MS.gene05526:intron 20.0%
!! TTAACATTGGTAAAAATAGT+AGG - chr6.2:84633943-84633962 None:intergenic 20.0%
!! TTCACAAAATAATTTCATGT+GGG + chr6.2:84631277-84631296 MS.gene05526:intron 20.0%
!! TTGTAAAATTGTCATTGTTA+AGG - chr6.2:84631364-84631383 None:intergenic 20.0%
!! TTGTCAAATCATAGATATAT+AGG + chr6.2:84630529-84630548 MS.gene05526:intron 20.0%
!! TTTCACAAAATAATTTCATG+TGG + chr6.2:84631276-84631295 MS.gene05526:intron 20.0%
!!! AAGTAACTTTGTAATTTTCA+GGG + chr6.2:84633520-84633539 MS.gene05526:intron 20.0%
!!! AATGTCATTTTTTCTAATAG+TGG - chr6.2:84630468-84630487 None:intergenic 20.0%
!!! AATTTTCTTCAAGGAAAATT+TGG + chr6.2:84633465-84633484 MS.gene05526:intron 20.0%
!!! AGATTCTAGAAAATTATATC+AGG - chr6.2:84632575-84632594 None:intergenic 20.0%
!!! AGCTTTTTAAACTTTATAGT+TGG - chr6.2:84629743-84629762 None:intergenic 20.0%
!!! ATAAGGTATAATTTTCTTCA+AGG + chr6.2:84633456-84633475 MS.gene05526:intron 20.0%
!!! ATATATTTTCATCCATGTAT+TGG - chr6.2:84632973-84632992 None:intergenic 20.0%
!!! ATTTTTTCTAATAGTGGAAA+TGG - chr6.2:84630462-84630481 None:intergenic 20.0%
!!! CAACTTGTGATATAATTTTT+GGG + chr6.2:84630499-84630518 MS.gene05526:intron 20.0%
!!! CATCTTTTAAAACTAATTTC+AGG - chr6.2:84634448-84634467 None:intergenic 20.0%
!!! GAATTGATTTTTGACATTTT+TGG + chr6.2:84630940-84630959 MS.gene05526:intron 20.0%
!!! GATTCTAGAAAATTATATCA+GGG - chr6.2:84632574-84632593 None:intergenic 20.0%
!!! TAAGTAACTTTGTAATTTTC+AGG + chr6.2:84633519-84633538 MS.gene05526:intron 20.0%
!!! TAATACTTTTTTTCCAACAT+TGG + chr6.2:84630866-84630885 MS.gene05526:intron 20.0%
!!! TACTATTTTTACCAATGTTA+AGG + chr6.2:84633942-84633961 MS.gene05526:CDS 20.0%
!!! TCAACTTGTGATATAATTTT+TGG + chr6.2:84630498-84630517 MS.gene05526:intron 20.0%
!!! TGTTACACAAACTTTAAAAT+AGG - chr6.2:84630838-84630857 None:intergenic 20.0%
!!! TTTAAAAAGCTTTTCATCAA+TGG + chr6.2:84629752-84629771 MS.gene05526:CDS 20.0%
! AAAATTGTCATTGTTAAGGT+TGG - chr6.2:84631360-84631379 None:intergenic 25.0%
! AAATAATTCATACCTTTGTG+TGG + chr6.2:84630046-84630065 MS.gene05526:intron 25.0%
! AAATTCACAATCAAGCAATT+TGG + chr6.2:84632460-84632479 MS.gene05526:intron 25.0%
! AATATTGTGTTAGTGTTATC+GGG - chr6.2:84634297-84634316 None:intergenic 25.0%
! AATGTCAATTAATAGTAGTG+AGG - chr6.2:84629864-84629883 None:intergenic 25.0%
! ACAAAGTGACATTTGTAAAA+AGG - chr6.2:84633044-84633063 None:intergenic 25.0%
! ACGCACTTTATAATTAGAAT+CGG + chr6.2:84633756-84633775 MS.gene05526:intron 25.0%
! ACTTTATAATTAGAATCGGA+AGG + chr6.2:84633760-84633779 MS.gene05526:intron 25.0%
! AGATCAAATCTACTCAAAAA+CGG - chr6.2:84631387-84631406 None:intergenic 25.0%
! ATAGCACAAGATGAAATATT+TGG + chr6.2:84634073-84634092 MS.gene05526:CDS 25.0%
! ATATAATCCGAAATGTTGTA+AGG + chr6.2:84631806-84631825 MS.gene05526:intron 25.0%
! ATGATCAAGATCATTTGAAA+TGG + chr6.2:84633729-84633748 MS.gene05526:intron 25.0%
! ATGTCTTCAATATAAAAGTG+TGG - chr6.2:84634266-84634285 None:intergenic 25.0%
! ATTAAACATGGAAAGAATGA+AGG + chr6.2:84633862-84633881 MS.gene05526:CDS 25.0%
! ATTTGGCATCATATTAAGAT+TGG - chr6.2:84632862-84632881 None:intergenic 25.0%
! CAATATTGTGTTAGTGTTAT+CGG - chr6.2:84634298-84634317 None:intergenic 25.0%
! GTCAAATCATAGATATATAG+GGG + chr6.2:84630531-84630550 MS.gene05526:intron 25.0%
! GTTGAAATATACCTTAACAT+TGG - chr6.2:84633956-84633975 None:intergenic 25.0%
! GTTTAAAAAAAGTTTGTGAC+CGG - chr6.2:84634425-84634444 None:intergenic 25.0%
! TAAGAGATTGAGTTTATGTT+AGG + chr6.2:84631311-84631330 MS.gene05526:intron 25.0%
! TAGTTGATCTCTGTATATAT+TGG - chr6.2:84630392-84630411 None:intergenic 25.0%
! TATAGTTGGAATCTTTACAA+AGG - chr6.2:84629729-84629748 None:intergenic 25.0%
! TGAGTTTATGTTAGGAAATA+CGG + chr6.2:84631319-84631338 MS.gene05526:intron 25.0%
!! ATTTAAAACCTTGACTAAGA+TGG - chr6.2:84634153-84634172 None:intergenic 25.0%
!! CAAGATGCATTAATTTGATA+TGG + chr6.2:84631927-84631946 MS.gene05526:intron 25.0%
!! TTGAATCTGATTTTCAAAGT+CGG + chr6.2:84632527-84632546 MS.gene05526:intron 25.0%
!!! GGATTTTAAAATCCGAAAAA+TGG + chr6.2:84631739-84631758 MS.gene05526:intron 25.0%
!!! GGATTTTAAAATCCGAAATA+GGG - chr6.2:84631733-84631752 None:intergenic 25.0%
!!! TTGACATTTTTGGTTGTTAT+CGG + chr6.2:84630950-84630969 MS.gene05526:intron 25.0%
AAAAAATACACACCACACAA+AGG - chr6.2:84630061-84630080 None:intergenic 30.0%
AAAAATGGAGAGTTTATGGA+GGG + chr6.2:84631754-84631773 MS.gene05526:intron 30.0%
AAAAGGGCAATCAATATCAA+AGG - chr6.2:84634651-84634670 None:intergenic 30.0%
AACTCAATCTCTTATAGAAG+TGG - chr6.2:84631305-84631324 None:intergenic 30.0%
AACTGTTATGTTCTTTGCTA+AGG + chr6.2:84632234-84632253 MS.gene05526:CDS 30.0%
AAGGTGATCACAATAAAAGA+GGG + chr6.2:84631578-84631597 MS.gene05526:intron 30.0%
ACTCAATCTCTTATAGAAGT+GGG - chr6.2:84631304-84631323 None:intergenic 30.0%
AGCAAAGATTATGGTGAAAT+GGG + chr6.2:84631973-84631992 MS.gene05526:CDS 30.0%
AGCAATATCAACATCTTCTT+TGG - chr6.2:84630741-84630760 None:intergenic 30.0%
AGCGTAAAAAAACGAATTTG+TGG + chr6.2:84631418-84631437 MS.gene05526:intron 30.0%
ATATGGAAGAGATTATGGAT+TGG + chr6.2:84634691-84634710 MS.gene05526:CDS 30.0%
ATATTGCAAACACTGTTTCA+AGG + chr6.2:84634585-84634604 MS.gene05526:CDS 30.0%
ATCACGGATACATTATCATA+CGG + chr6.2:84632698-84632717 MS.gene05526:intron 30.0%
ATGCCTTCAATATAAAGTGT+CGG + chr6.2:84634370-84634389 MS.gene05526:intron 30.0%
ATTTGGTATCCTACACAATA+AGG + chr6.2:84633439-84633458 MS.gene05526:CDS 30.0%
CAATTCAAATTACAAGTGCA+AGG + chr6.2:84629929-84629948 MS.gene05526:intron 30.0%
CATAAACGCATTAGATACAA+AGG - chr6.2:84632664-84632683 None:intergenic 30.0%
CATTACATTTCACACAAACT+AGG + chr6.2:84633230-84633249 MS.gene05526:intron 30.0%
CTATGAATTCTCTTACTACA+AGG - chr6.2:84632746-84632765 None:intergenic 30.0%
GAATTCATAGTCAATCAGTT+TGG + chr6.2:84632756-84632775 MS.gene05526:intron 30.0%
GCATCATCGAAAATTAAAAC+AGG - chr6.2:84633389-84633408 None:intergenic 30.0%
GTAAGCTATCCTATCTAAAT+TGG - chr6.2:84632787-84632806 None:intergenic 30.0%
TAAATATTGAAGGACCATTG+AGG + chr6.2:84634496-84634515 MS.gene05526:intron 30.0%
TAACATAGTGTTCATGATGT+TGG + chr6.2:84630295-84630314 MS.gene05526:intron 30.0%
TAAGCCATATTTGGTATTGT+TGG - chr6.2:84634537-84634556 None:intergenic 30.0%
TAGACATTGATGCAGTAATT+TGG + chr6.2:84633173-84633192 MS.gene05526:intron 30.0%
TAGCAAAGAACATAACAGTT+GGG - chr6.2:84632234-84632253 None:intergenic 30.0%
TCAGATTCAAAATACCAAGT+CGG - chr6.2:84632517-84632536 None:intergenic 30.0%
TCAGTTATGAGAATGACATA+AGG - chr6.2:84633998-84634017 None:intergenic 30.0%
TCATAGATATATAGGGGTAA+TGG + chr6.2:84630537-84630556 MS.gene05526:intron 30.0%
TCTTCATATGTATACCTTGA+TGG + chr6.2:84632168-84632187 MS.gene05526:CDS 30.0%
TGAAATATTTGGACCTGTTA+TGG + chr6.2:84634084-84634103 MS.gene05526:CDS 30.0%
TGCTTATAAATGTCACAAGA+GGG + chr6.2:84631212-84631231 MS.gene05526:intron 30.0%
TTAGCAAAGAACATAACAGT+TGG - chr6.2:84632235-84632254 None:intergenic 30.0%
TTCGGATTATATAACTCGAA+AGG - chr6.2:84631798-84631817 None:intergenic 30.0%
TTGCTTATAAATGTCACAAG+AGG + chr6.2:84631211-84631230 MS.gene05526:intron 30.0%
TTTATGAGTAGTCATCTAGT+TGG + chr6.2:84631546-84631565 MS.gene05526:intron 30.0%
! AAATTATATCAGGGTGTTAC+AGG - chr6.2:84632565-84632584 None:intergenic 30.0%
! AACGAATTTGTGGATTTTCT+TGG + chr6.2:84631428-84631447 MS.gene05526:intron 30.0%
! GGAAATGGAATGCATATTTT+TGG - chr6.2:84630447-84630466 None:intergenic 30.0%
! TCTTCAATATAAAAGTGTGG+TGG - chr6.2:84634263-84634282 None:intergenic 30.0%
! TTTCTTTCTCCTTTTCATCT+AGG + chr6.2:84633075-84633094 MS.gene05526:intron 30.0%
!! ATCATTGATTTGAGCTTAGA+CGG - chr6.2:84633714-84633733 None:intergenic 30.0%
!! TCCATAAACTCTCCATTTTT+CGG - chr6.2:84631754-84631773 None:intergenic 30.0%
!! TGGCAAATACTAATTTTGAC+TGG + chr6.2:84633256-84633275 MS.gene05526:intron 30.0%
!! TGTTTAGTTTGTTAGCATCA+CGG + chr6.2:84632682-84632701 MS.gene05526:intron 30.0%
!! TTGAATCCGATTTTGAAAGT+CGG + chr6.2:84632824-84632843 MS.gene05526:intron 30.0%
!! TTTGATATTGATTGCCCTTT+TGG + chr6.2:84634650-84634669 MS.gene05526:CDS 30.0%
!!! CGGATTTTAAAATCCGAAAT+AGG - chr6.2:84631734-84631753 None:intergenic 30.0%
!!! CTAATTTTGACTGGTTTTAC+AGG + chr6.2:84633265-84633284 MS.gene05526:intron 30.0%
!!! GATCTTGATTTGTTTTTGAC+GGG + chr6.2:84632437-84632456 MS.gene05526:intron 30.0%
!!! GGATCTTGATTTGTTTTTGA+CGG + chr6.2:84632436-84632455 MS.gene05526:intron 30.0%
!!! TTTTTTTGCTCATCTTGCTA+AGG + chr6.2:84632327-84632346 MS.gene05526:CDS 30.0%
AAAAGTTTGTGACCGGAATT+TGG - chr6.2:84634418-84634437 None:intergenic 35.0%
AAAGTTTGTGACCGGAATTT+GGG - chr6.2:84634417-84634436 None:intergenic 35.0%
AACCAAACATACACCAATGT+TGG - chr6.2:84630882-84630901 None:intergenic 35.0%
AAGGAGCCACATTATTAACT+GGG + chr6.2:84633881-84633900 MS.gene05526:CDS 35.0%
AAGGCCAACAATACCAAATA+TGG + chr6.2:84634530-84634549 MS.gene05526:CDS 35.0%
AATATCCTACGTTACTATGC+CGG + chr6.2:84632100-84632119 MS.gene05526:CDS 35.0%
ACCTTAAATGCCAAGGATTA+GGG - chr6.2:84632918-84632937 None:intergenic 35.0%
AGCCATGGAGAATTGTAAAT+AGG - chr6.2:84634758-84634777 None:intergenic 35.0%
AGGGATTGTGACAAAGAATT+TGG + chr6.2:84634562-84634581 MS.gene05526:CDS 35.0%
AGTGGATATGGAAGAGATTA+TGG + chr6.2:84634686-84634705 MS.gene05526:CDS 35.0%
ATAACAGTTGGGAAATTCCA+AGG - chr6.2:84632223-84632242 None:intergenic 35.0%
ATAGGAGAGAGCAAAGATTA+TGG + chr6.2:84631964-84631983 MS.gene05526:intron 35.0%
ATGGTCATGAACTGTTTGAT+AGG + chr6.2:84631946-84631965 MS.gene05526:intron 35.0%
ATTCATCGTAAATCCCTTCT+TGG - chr6.2:84633579-84633598 None:intergenic 35.0%
ATTTCACACAAACTAGGCAT+TGG + chr6.2:84633236-84633255 MS.gene05526:intron 35.0%
CAAGGATATTTGACATCTTG+AGG + chr6.2:84629947-84629966 MS.gene05526:intron 35.0%
CAAGGTGATCACAATAAAAG+AGG + chr6.2:84631577-84631596 MS.gene05526:intron 35.0%
CACTTCTCCATGAACTTTAT+CGG - chr6.2:84632131-84632150 None:intergenic 35.0%
CACTTTCCGACTTTCAAAAT+CGG - chr6.2:84632833-84632852 None:intergenic 35.0%
CATTAACACCTTAAATGCCA+AGG - chr6.2:84632925-84632944 None:intergenic 35.0%
CATTGAGGAAGGAATTAAGA+AGG + chr6.2:84634511-84634530 MS.gene05526:CDS 35.0%
CATTGGATACAATTGATGGA+GGG + chr6.2:84632032-84632051 MS.gene05526:CDS 35.0%
CGGATTCAAATATACCAAGT+TGG - chr6.2:84632813-84632832 None:intergenic 35.0%
CTCCTATTTACAATTCTCCA+TGG + chr6.2:84634753-84634772 MS.gene05526:CDS 35.0%
CTTAGCAAATGTTCTCAACT+AGG + chr6.2:84631901-84631920 MS.gene05526:intron 35.0%
CTTCTTAATTCCTTCCTCAA+TGG - chr6.2:84634513-84634532 None:intergenic 35.0%
GAAAAATGGAGAGTTTATGG+AGG + chr6.2:84631753-84631772 MS.gene05526:intron 35.0%
GAGCAAAGATTATGGTGAAA+TGG + chr6.2:84631972-84631991 MS.gene05526:CDS 35.0%
GCAAAAAAAAGTGATGAGAG+AGG - chr6.2:84632316-84632335 None:intergenic 35.0%
GCTGGAAAAGGTGAAAAATT+GGG + chr6.2:84633612-84633631 MS.gene05526:CDS 35.0%
GTAATCACTTCTTCTGTTCT+TGG - chr6.2:84630701-84630720 None:intergenic 35.0%
GTTCCTTAATTCATAGCATG+CGG + chr6.2:84632400-84632419 MS.gene05526:intron 35.0%
TATACCTTGATGGAACCTAT+TGG + chr6.2:84632178-84632197 MS.gene05526:CDS 35.0%
TATCATACGGGATATCTTCA+CGG + chr6.2:84632711-84632730 MS.gene05526:intron 35.0%
TCACGGATACATTATCATAC+GGG + chr6.2:84632699-84632718 MS.gene05526:intron 35.0%
TCATCTTATACCCTCCAAAA+GGG - chr6.2:84634667-84634686 None:intergenic 35.0%
TCCGAAAAATGGAGAGTTTA+TGG + chr6.2:84631750-84631769 MS.gene05526:intron 35.0%
TGACCGACACTTTATATTGA+AGG - chr6.2:84634376-84634395 None:intergenic 35.0%
TGCATCAATGTCTATATGTG+AGG - chr6.2:84633167-84633186 None:intergenic 35.0%
TGCTGGAAAAGGTGAAAAAT+TGG + chr6.2:84633611-84633630 MS.gene05526:CDS 35.0%
TGTATGATCTTGTGACTTCA+GGG + chr6.2:84632629-84632648 MS.gene05526:intron 35.0%
TTAGGAAATACGGTGAGTAT+TGG + chr6.2:84631329-84631348 MS.gene05526:intron 35.0%
TTCCAACATTGGTGTATGTT+TGG + chr6.2:84630877-84630896 MS.gene05526:intron 35.0%
TTCCTTAATTCATAGCATGC+GGG + chr6.2:84632401-84632420 MS.gene05526:intron 35.0%
TTCGATCCTAAAGTTCAACA+AGG + chr6.2:84633649-84633668 MS.gene05526:CDS 35.0%
TTGGACTGTCCAATTTAGAT+AGG + chr6.2:84632775-84632794 MS.gene05526:intron 35.0%
TTGTATGATCTTGTGACTTC+AGG + chr6.2:84632628-84632647 MS.gene05526:intron 35.0%
TTGTTGGACACATTATACCT+TGG + chr6.2:84632203-84632222 MS.gene05526:CDS 35.0%
TTTCATCAATGGAGAATTCG+TGG + chr6.2:84629763-84629782 MS.gene05526:CDS 35.0%
! AGCAATCAGTAATTTGAAGC+CGG + chr6.2:84633337-84633356 MS.gene05526:CDS 35.0%
! ATTTTCTTTGCAGACGAGTA+AGG + chr6.2:84633813-84633832 MS.gene05526:intron 35.0%
! CGAAAGGTGTAAAAACATTC+AGG - chr6.2:84631782-84631801 None:intergenic 35.0%
! CTAGATGTTTTGTCCAAGAA+GGG + chr6.2:84633563-84633582 MS.gene05526:CDS 35.0%
! CTCTTTTATTGTGATCACCT+TGG - chr6.2:84631579-84631598 None:intergenic 35.0%
! GTTTTACAGGTCAGTTTTAC+AGG + chr6.2:84633278-84633297 MS.gene05526:intron 35.0%
! TCTAGATGTTTTGTCCAAGA+AGG + chr6.2:84633562-84633581 MS.gene05526:CDS 35.0%
! TGAATTTGAGAAGAAAGTGC+TGG + chr6.2:84633594-84633613 MS.gene05526:CDS 35.0%
!! AACTTAGAAAGTGCCATAAC+AGG - chr6.2:84634100-84634119 None:intergenic 35.0%
!! AAGCATTTGATAATGGTCCA+TGG + chr6.2:84630777-84630796 MS.gene05526:CDS 35.0%
!! ATATTGATTGCCCTTTTGGA+GGG + chr6.2:84634654-84634673 MS.gene05526:CDS 35.0%
!! GAGAAGTGTTCAAAACTTCT+AGG + chr6.2:84632143-84632162 MS.gene05526:CDS 35.0%
!! GCAAGAGAAGCATTTGATAA+TGG + chr6.2:84630770-84630789 MS.gene05526:CDS 35.0%
!! GTTGAACTTTAGGATCGAAA+GGG - chr6.2:84633648-84633667 None:intergenic 35.0%
!! TGTTGAACTTTAGGATCGAA+AGG - chr6.2:84633649-84633668 None:intergenic 35.0%
!! TTTGGTAGCTTCTGCTATTT+TGG - chr6.2:84630723-84630742 None:intergenic 35.0%
!!! ATTCGTTTTTTTACGCTTCG+AGG - chr6.2:84631415-84631434 None:intergenic 35.0%
!!! TTCGTTTTTTTACGCTTCGA+GGG - chr6.2:84631414-84631433 None:intergenic 35.0%
AACACCAATAGGTTCCATCA+AGG - chr6.2:84632185-84632204 None:intergenic 40.0%
AAGCCGGTATCACTTGAATT+AGG + chr6.2:84633353-84633372 MS.gene05526:CDS 40.0%
AAGGTGAAAAATTGGGTCGT+TGG + chr6.2:84633619-84633638 MS.gene05526:CDS 40.0%
ACCCTAATCCTTGGCATTTA+AGG + chr6.2:84632914-84632933 MS.gene05526:intron 40.0%
ACTTCTTAGGCACCCTATTT+CGG + chr6.2:84631718-84631737 MS.gene05526:intron 40.0%
AGATTTGAACTTACAGCACC+AGG - chr6.2:84630812-84630831 None:intergenic 40.0%
AGGAGCCACATTATTAACTG+GGG + chr6.2:84633882-84633901 MS.gene05526:CDS 40.0%
AGTCACGGAAATCATGCATT+TGG - chr6.2:84632879-84632898 None:intergenic 40.0%
ATCGTGTGCAAATGAGATGT+TGG - chr6.2:84633795-84633814 None:intergenic 40.0%
ATGGAGGGAAACTATACAGT+TGG + chr6.2:84632047-84632066 MS.gene05526:CDS 40.0%
ATGTGTCCAACAACACCAAT+AGG - chr6.2:84632196-84632215 None:intergenic 40.0%
CAATTCGTGCAGGTATCATT+TGG + chr6.2:84634609-84634628 MS.gene05526:CDS 40.0%
CACCTTAAATGCCAAGGATT+AGG - chr6.2:84632919-84632938 None:intergenic 40.0%
CCAGATCATCGTACTAAGAT+CGG - chr6.2:84632605-84632624 None:intergenic 40.0%
CCTCCTAATTCAAGTGATAC+CGG - chr6.2:84633359-84633378 None:intergenic 40.0%
CTCATCTTATACCCTCCAAA+AGG - chr6.2:84634668-84634687 None:intergenic 40.0%
CTTACCCCCAGTTAATAATG+TGG - chr6.2:84633890-84633909 None:intergenic 40.0%
GAAGGAGCCACATTATTAAC+TGG + chr6.2:84633880-84633899 MS.gene05526:CDS 40.0%
GAATACCAGCCTAGATGAAA+AGG - chr6.2:84633087-84633106 None:intergenic 40.0%
GCATTGGATACAATTGATGG+AGG + chr6.2:84632031-84632050 MS.gene05526:CDS 40.0%
GCTGTTGATCTTGCTCTATT+TGG + chr6.2:84633422-84633441 MS.gene05526:CDS 40.0%
GGCATAGTAACGTAGGATAT+TGG - chr6.2:84632101-84632120 None:intergenic 40.0%
GGGTATAAGATGAGTGGATA+TGG + chr6.2:84634674-84634693 MS.gene05526:CDS 40.0%
GTATGATCTTGTGACTTCAG+GGG + chr6.2:84632630-84632649 MS.gene05526:intron 40.0%
TATTGAAGGACCATTGAGGA+AGG + chr6.2:84634500-84634519 MS.gene05526:intron 40.0%
TCCTTAATTCATAGCATGCG+GGG + chr6.2:84632402-84632421 MS.gene05526:intron 40.0%
TGCGTGACTTATCCTTACTT+GGG - chr6.2:84633677-84633696 None:intergenic 40.0%
TTGCGTGACTTATCCTTACT+TGG - chr6.2:84633678-84633697 None:intergenic 40.0%
TTTACAGGTTCAACCGAAAC+AGG + chr6.2:84633293-84633312 MS.gene05526:CDS 40.0%
! AATAGGGTGCCTAAGAAGTT+TGG - chr6.2:84631717-84631736 None:intergenic 40.0%
! CATTTTCGCCATCTTAGTCA+AGG + chr6.2:84634142-84634161 MS.gene05526:intron 40.0%
! GCAGCATTGGATACAATTGA+TGG + chr6.2:84632028-84632047 MS.gene05526:CDS 40.0%
! TTCATCCATGTATTGGTGTC+TGG - chr6.2:84632966-84632985 None:intergenic 40.0%
! TTTCTCCTTTTCATCTAGGC+TGG + chr6.2:84633079-84633098 MS.gene05526:intron 40.0%
! TTTGGAGGGTATAAGATGAG+TGG + chr6.2:84634668-84634687 MS.gene05526:CDS 40.0%
! TTTTGCTCATCTTGCTAAGG+AGG + chr6.2:84632330-84632349 MS.gene05526:CDS 40.0%
!! ACTCACAGTATTGACACATG+CGG - chr6.2:84634333-84634352 None:intergenic 40.0%
!! ATGGAACCTATTGGTGTTGT+TGG + chr6.2:84632187-84632206 MS.gene05526:CDS 40.0%
!! CTCTTGGTTCTGCTCAATTA+GGG - chr6.2:84632002-84632021 None:intergenic 40.0%
!! GATATTGATTGCCCTTTTGG+AGG + chr6.2:84634653-84634672 MS.gene05526:CDS 40.0%
!! TGAGAAGAAAGTGCTGGAAA+AGG + chr6.2:84633600-84633619 MS.gene05526:CDS 40.0%
!!! ATCTAGTTGGCTTTTGTCCA+AGG + chr6.2:84631559-84631578 MS.gene05526:intron 40.0%
ACCAAATATGGCTTAGCAGC+AGG + chr6.2:84634542-84634561 MS.gene05526:CDS 45.0%
ACCCCGCATGCTATGAATTA+AGG - chr6.2:84632406-84632425 None:intergenic 45.0%
AGTACATTGAGCACTCCATC+TGG - chr6.2:84633109-84633128 None:intergenic 45.0%
ATCTAGGCTGGTATTCCAGA+TGG + chr6.2:84633091-84633110 MS.gene05526:intron 45.0%
ATTAACTGGGGGTAAGCAAG+TGG + chr6.2:84633894-84633913 MS.gene05526:CDS 45.0%
CATCACCAGACACCAATACA+TGG + chr6.2:84632958-84632977 MS.gene05526:intron 45.0%
CCAAATATGGCTTAGCAGCA+GGG + chr6.2:84634543-84634562 MS.gene05526:CDS 45.0%
CCAAGAGGAAATAGCAGCAT+TGG + chr6.2:84632015-84632034 MS.gene05526:CDS 45.0%
CCGATCTTAGTACGATGATC+TGG + chr6.2:84632602-84632621 MS.gene05526:intron 45.0%
CCGGTATCACTTGAATTAGG+AGG + chr6.2:84633356-84633375 MS.gene05526:CDS 45.0%
CCTAATTGAGCAGAACCAAG+AGG + chr6.2:84632000-84632019 MS.gene05526:CDS 45.0%
CTCAATGTACTGCCAGGATT+TGG + chr6.2:84633118-84633137 MS.gene05526:CDS 45.0%
CTCATCTTGCTAAGGAGGTA+AGG + chr6.2:84632335-84632354 MS.gene05526:intron 45.0%
GAATTCGTGGACTCAGTTTC+AGG + chr6.2:84629776-84629795 MS.gene05526:CDS 45.0%
GCGTGACTTATCCTTACTTG+GGG - chr6.2:84633676-84633695 None:intergenic 45.0%
GCTCTCCTATCTTCATTGCA+CGG - chr6.2:84632487-84632506 None:intergenic 45.0%
GGAGCCACATTATTAACTGG+GGG + chr6.2:84633883-84633902 MS.gene05526:CDS 45.0%
GGATAGCTTACGTTCCAACT+TGG + chr6.2:84632796-84632815 MS.gene05526:intron 45.0%
GGGATCTTAACCCTAATCCT+TGG + chr6.2:84632905-84632924 MS.gene05526:intron 45.0%
GGTAAGCAAGTGGGAAACAA+AGG + chr6.2:84633904-84633923 MS.gene05526:CDS 45.0%
GGTCAATAACCACGATGTTG+CGG + chr6.2:84634391-84634410 MS.gene05526:intron 45.0%
GTTTCAAGGTCAATTCGTGC+AGG + chr6.2:84634599-84634618 MS.gene05526:CDS 45.0%
TGGGGTCCTTGTTGAACTTT+AGG - chr6.2:84633658-84633677 None:intergenic 45.0%
TTAACTGGGGGTAAGCAAGT+GGG + chr6.2:84633895-84633914 MS.gene05526:CDS 45.0%
TTCAACAAGGACCCCAAGTA+AGG + chr6.2:84633662-84633681 MS.gene05526:intron 45.0%
TTGCGCGCCTTACAACATTT+CGG - chr6.2:84631816-84631835 None:intergenic 45.0%
TTGGACCGTGCAATGAAGAT+AGG + chr6.2:84632479-84632498 MS.gene05526:intron 45.0%
! ATGAACTTTATCGGCTGCAC+CGG - chr6.2:84632122-84632141 None:intergenic 45.0%
! TTTGGCTGCTGGTTGTACTA+TGG + chr6.2:84632267-84632286 MS.gene05526:CDS 45.0%
!! CCAATGCTGCTATTTCCTCT+TGG - chr6.2:84632018-84632037 None:intergenic 45.0%
!! CCTCTTGGTTCTGCTCAATT+AGG - chr6.2:84632003-84632022 None:intergenic 45.0%
!!! AATTTTTATTTTGAAAAAAT+TGG - chr6.2:84630565-84630584 None:intergenic 5.0%
!!! ATTTTTATTTTGAAAAAATT+GGG - chr6.2:84630564-84630583 None:intergenic 5.0%
!!! TGAAATTTTTTATTTTTTTA+AGG - chr6.2:84629892-84629911 None:intergenic 5.0%
ATGATTTCCGTGACTGCAGG+GGG + chr6.2:84632884-84632903 MS.gene05526:intron 50.0%
CATGATTTCCGTGACTGCAG+GGG + chr6.2:84632883-84632902 MS.gene05526:intron 50.0%
CATTACTCGTCGGCCTGTTT+CGG - chr6.2:84633309-84633328 None:intergenic 50.0%
CCAGCAGTTGAACCAAATCC+TGG - chr6.2:84633133-84633152 None:intergenic 50.0%
CCCTGCTGCTAAGCCATATT+TGG - chr6.2:84634546-84634565 None:intergenic 50.0%
GCATGATTTCCGTGACTGCA+GGG + chr6.2:84632882-84632901 MS.gene05526:intron 50.0%
GCCTAAGAAGTTTGGAGGGT+GGG - chr6.2:84631709-84631728 None:intergenic 50.0%
GCGCAAGAAGCTTGAAGTGT+GGG + chr6.2:84631830-84631849 MS.gene05526:intron 50.0%
GGGTGCCTAAGAAGTTTGGA+GGG - chr6.2:84631713-84631732 None:intergenic 50.0%
GGTGCAGCCGATAAAGTTCA+TGG + chr6.2:84632121-84632140 MS.gene05526:CDS 50.0%
GTACAACCAGCAGCCAAACA+AGG - chr6.2:84632265-84632284 None:intergenic 50.0%
TCCCACCCTCCAAACTTCTT+AGG + chr6.2:84631705-84631724 MS.gene05526:intron 50.0%
TGCATGATTTCCGTGACTGC+AGG + chr6.2:84632881-84632900 MS.gene05526:intron 50.0%
TGCCTAAGAAGTTTGGAGGG+TGG - chr6.2:84631710-84631729 None:intergenic 50.0%
TGCTAAGGCTGCTCCTTGTT+TGG + chr6.2:84632249-84632268 MS.gene05526:CDS 50.0%
! AGGGTGCCTAAGAAGTTTGG+AGG - chr6.2:84631714-84631733 None:intergenic 50.0%
! CCAGGATTTGGTTCAACTGC+TGG + chr6.2:84633130-84633149 MS.gene05526:CDS 50.0%
! CGTAGGATATTGGCTGCTTC+AGG - chr6.2:84632091-84632110 None:intergenic 50.0%
AACAGGCCGACGAGTAATGC+AGG + chr6.2:84633310-84633329 MS.gene05526:CDS 55.0%
CGATGTTGCGGCCCAAATTC+CGG + chr6.2:84634403-84634422 MS.gene05526:intron 55.0%
CGCGCAAGAAGCTTGAAGTG+TGG + chr6.2:84631829-84631848 MS.gene05526:intron 55.0%
CTGCAGCCTGCATTACTCGT+CGG - chr6.2:84633319-84633338 None:intergenic 55.0%
CTTACAGCACCAGGCATACG+TGG - chr6.2:84630803-84630822 None:intergenic 55.0%
GAATTTGGGCCGCAACATCG+TGG - chr6.2:84634403-84634422 None:intergenic 55.0%
GGAGAGCTCACATTCCGACT+TGG + chr6.2:84632500-84632519 MS.gene05526:intron 55.0%
TAAGATCCCCCCTGCAGTCA+CGG - chr6.2:84632894-84632913 None:intergenic 55.0%
TGATTTCCGTGACTGCAGGG+GGG + chr6.2:84632885-84632904 MS.gene05526:intron 55.0%
! CTGCACCGGCATAGTAACGT+AGG - chr6.2:84632108-84632127 None:intergenic 55.0%
! GGAGTGCTCAATGTACTGCC+AGG + chr6.2:84633112-84633131 MS.gene05526:CDS 55.0%
!! GAGAGAGGTGTTTGCTCAGC+AGG - chr6.2:84632301-84632320 None:intergenic 55.0%
GCATGCGGGGTGTATCTTCG+AGG + chr6.2:84632415-84632434 MS.gene05526:intron 60.0%
! GCTGCTCCTTGTTTGGCTGC+TGG + chr6.2:84632256-84632275 MS.gene05526:CDS 60.0%
GCACCAGGCATACGTGGCCA+TGG - chr6.2:84630797-84630816 None:intergenic 65.0%
GGTCCATGGCCACGTATGCC+TGG + chr6.2:84630791-84630810 MS.gene05526:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 84629701 84634781 84629701 ID=MS.gene05526
chr6.2 mRNA 84629701 84634781 84629701 ID=MS.gene05526.t1;Parent=MS.gene05526
chr6.2 exon 84629701 84629797 84629701 ID=MS.gene05526.t1.exon1;Parent=MS.gene05526.t1
chr6.2 CDS 84629701 84629797 84629701 ID=cds.MS.gene05526.t1;Parent=MS.gene05526.t1
chr6.2 exon 84630675 84630817 84630675 ID=MS.gene05526.t1.exon2;Parent=MS.gene05526.t1
chr6.2 CDS 84630675 84630817 84630675 ID=cds.MS.gene05526.t1;Parent=MS.gene05526.t1
chr6.2 exon 84631968 84632351 84631968 ID=MS.gene05526.t1.exon3;Parent=MS.gene05526.t1
chr6.2 CDS 84631968 84632351 84631968 ID=cds.MS.gene05526.t1;Parent=MS.gene05526.t1
chr6.2 exon 84633097 84633186 84633097 ID=MS.gene05526.t1.exon4;Parent=MS.gene05526.t1
chr6.2 CDS 84633097 84633186 84633097 ID=cds.MS.gene05526.t1;Parent=MS.gene05526.t1
chr6.2 exon 84633287 84633460 84633287 ID=MS.gene05526.t1.exon5;Parent=MS.gene05526.t1
chr6.2 CDS 84633287 84633460 84633287 ID=cds.MS.gene05526.t1;Parent=MS.gene05526.t1
chr6.2 exon 84633541 84633678 84633541 ID=MS.gene05526.t1.exon6;Parent=MS.gene05526.t1
chr6.2 CDS 84633541 84633678 84633541 ID=cds.MS.gene05526.t1;Parent=MS.gene05526.t1
chr6.2 exon 84633826 84633963 84633826 ID=MS.gene05526.t1.exon7;Parent=MS.gene05526.t1
chr6.2 CDS 84633826 84633963 84633826 ID=cds.MS.gene05526.t1;Parent=MS.gene05526.t1
chr6.2 exon 84634061 84634122 84634061 ID=MS.gene05526.t1.exon8;Parent=MS.gene05526.t1
chr6.2 CDS 84634061 84634122 84634061 ID=cds.MS.gene05526.t1;Parent=MS.gene05526.t1
chr6.2 exon 84634508 84634781 84634508 ID=MS.gene05526.t1.exon9;Parent=MS.gene05526.t1
chr6.2 CDS 84634508 84634781 84634508 ID=cds.MS.gene05526.t1;Parent=MS.gene05526.t1
Gene Sequence

>MS.gene05526

ATGGCAAATCACAGCATCTTAGACTCCTTTGTAAAGATTCCAACTATAAAGTTTAAAAAGCTTTTCATCAATGGAGAATTCGTGGACTCAGTTTCAGGTTTTTTTCAATTAGTTTCATACATATTTGCCTCAATTCTTTTTAATTTTCGTACAATATTTACCTCACTACTATTAATTGACATTTCATGCCTTAAAAAAATAAAAAATTTCATACATGCTAACTAAATACAATTCAAATTACAAGTGCAAGGATATTTGACATCTTGAGGCGCAAGTTTAAACTTACAGTTCTCTATTTTTCTACATGTAATATGTGAGATTTTCGCAATGTGACCATTTGACAAAAAATAATTCATACCTTTGTGTGGTGTGTATTTTTTGCATTGTTTCCTAACTAAATATATAAAGTAAGAGTTTAAAGATTTGAACCAAAAAAAAAGTTTAAAGATTATACGTTGACAAATATTTTTTTATAAGTGAGAATATAATTCTTTTTTTTTTTGAGGGAAATATAATTCTTTTATATGGTCATTCAATCATATATTATCATATAGATATTTGTATATTTTTTTTTAAGATATGTTTATTACAAAGTAACATAGTGTTCATGATGTTGGATTGAATAAATGTGTAAAAAAAAGTCATAAATGAAAAATATATAATTGTATAGTCGTTGATGAGAATTTATCCAATATATACAGAGATCAACTATCAAAATTCAATTTGGATACTATATTTTAGCACCAAAAATATGCATTCCATTTCCACTATTAGAAAAAATGACATTGGACTATATCTCAACTTGTGATATAATTTTTGGGTGTATTCTTGTCAAATCATAGATATATAGGGGTAATGGTCCCAATTTTTTCAAAATAAAAATTTAAAATTTAAATTGACTTTTATGGTTACAAAGTTTTAATTGACTTGATATACTTATATGCATATTGGATTTTTTGTTGAAATAAAAAAAGGAAAAACTTTTGAGACTGTTGATCCAAGAACAGAAGAAGTGATTACCAAAATAGCAGAAGCTACCAAAGAAGATGTTGATATTGCTGTGAAAGCTGCAAGAGAAGCATTTGATAATGGTCCATGGCCACGTATGCCTGGTGCTGTAAGTTCAAATCTTCACCTATTTTAAAGTTTGTGTAACAACATACTCTAATACTTTTTTTCCAACATTGGTGTATGTTTGGTTTTAATTTTGAATGTGACAAAATTAATTACATAAGTATAGAATTGATTTTTGACATTTTTGGTTGTTATCGGAGAATTGATTTTGCTTGTAGAACATATACTAACTTATAATTTGTAGTTTTTGACGCAACAAGATTTTTCCATTCAAATTTATTGTTCAAATCATTTCTAAGTGAACGTATTCAAACATACTCCTTTGATTACATTTATAAATAATTTTTGTTTGTTCAAATTTATTAAATAACTGATGTATCTGGACTATATTATAATCAAGATACATCAGTTATTTAATGAATCTGAAAAAGCAAAATTGCTTATAAATGTCACAAGAGGGAGTAAATCACTTCACAATCAACTTATTTTAACTAAAATCAATTTCACAAAATAATTTCATGTGGGTCCCACTTCTATAAGAGATTGAGTTTATGTTAGGAAATACGGTGAGTATTGGTAGCACCAACCTTAACAATGACAATTTTACAACCGTTTTTGAGTAGATTTGATCTTCATCCCTCGAAGCGTAAAAAAACGAATTTGTGGATTTTCTTGGTGAAAAGTTGCATTAGCAAGCATCATTCATAAATTACTCATTGAACACAAATATTTCATAAATTATTGCAAGGCTACTTTCATTTATTTAACTATTTTATGAGTAGTCATCTAGTTGGCTTTTGTCCAAGGTGATCACAATAAAAGAGGGAACATACTTTTGACATAGTAAAAAATAAAGTGAATATTGAGAAAGACAAAAAATATGTAAGGAATGTATAAAATAAGTGCCTGTAGAAATATATAATTTTCTTTTCCCACCCTCCAAACTTCTTAGGCACCCTATTTCGGATTTTAAAATCCGAAAAATGGAGAGTTTATGGAGGGTTCCTGAATGTTTTTACACCTTTCGAGTTATATAATCCGAAATGTTGTAAGGCGCGCAAGAAGCTTGAAGTGTGGGAAAAGAAACTCGCAAAAAATAATGCTTAACAAATTTTCACACAAAGAACTTAGCAAATGTTCTCAACTAGGAAGCAAGATGCATTAATTTGATATGGTCATGAACTGTTTGATAGGAGAGAGCAAAGATTATGGTGAAATGGGCAACCCTAATTGAGCAGAACCAAGAGGAAATAGCAGCATTGGATACAATTGATGGAGGGAAACTATACAGTTGGTGTAAGACAATAGATGTACCTGAAGCAGCCAATATCCTACGTTACTATGCCGGTGCAGCCGATAAAGTTCATGGAGAAGTGTTCAAAACTTCTAGGAATCTTCATATGTATACCTTGATGGAACCTATTGGTGTTGTTGGACACATTATACCTTGGAATTTCCCAACTGTTATGTTCTTTGCTAAGGCTGCTCCTTGTTTGGCTGCTGGTTGTACTATGGTTCTTAAGCCTGCTGAGCAAACACCTCTCTCATCACTTTTTTTTGCTCATCTTGCTAAGGAGGTAAGGTTAAAGAAAATTTATTGAGTTGGTTTTGAAAGATTTTTTATAGTTCCTTAATTCATAGCATGCGGGGTGTATCTTCGAGGATCTTGATTTGTTTTTGACGGGAAATTCACAATCAAGCAATTTGGACCGTGCAATGAAGATAGGAGAGCTCACATTCCGACTTGGTATTTTGAATCTGATTTTCAAAGTCGGAACGTGAATAGTCCTGTAACACCCTGATATAATTTTCTAGAATCTTACAAGTCCGATCTTAGTACGATGATCTGGACTTTGTATGATCTTGTGACTTCAGGGGATCTGAATCCTTTGTATCTAATGCGTTTATGTTTAGTTTGTTAGCATCACGGATACATTATCATACGGGATATCTTCACGGATTTTGATTCCTTGTAGTAAGAGAATTCATAGTCAATCAGTTTGGACTGTCCAATTTAGATAGGATAGCTTACGTTCCAACTTGGTATATTTGAATCCGATTTTGAAAGTCGGAAAGTGAAAAGTCCAATCTTAATATGATGCCAAATGCATGATTTCCGTGACTGCAGGGGGGATCTTAACCCTAATCCTTGGCATTTAAGGTGTTAATGTCTAGTTTGTTAGCATCACCAGACACCAATACATGGATGAAAATATATTAGCATATATTCAATTTAAGAAAACTTGTACCTATTTCTACTTTTAAACCTTTTTACAAATGTCACTTTGTTTCATTTCTTGTTTCTTTCTCCTTTTCATCTAGGCTGGTATTCCAGATGGAGTGCTCAATGTACTGCCAGGATTTGGTTCAACTGCTGGAGCTGCAATAACCTCACATATAGACATTGATGCAGTAATTTGGCTTCAATTTTTTTTTTTATGACATCGATTAAATGCATTACATTTCACACAAACTAGGCATTGGCAAATACTAATTTTGACTGGTTTTACAGGTCAGTTTTACAGGTTCAACCGAAACAGGCCGACGAGTAATGCAGGCTGCAGCAATCAGTAATTTGAAGCCGGTATCACTTGAATTAGGAGGCAAGTCGCCTGTTTTAATTTTCGATGATGCTGATGTTGATAAAGCTGTTGATCTTGCTCTATTTGGTATCCTACACAATAAGGTATAATTTTCTTCAAGGAAAATTTGGTAACATAAAAAAAGAACAAAGACTTGTTCCTTAAGTAACTTTGTAATTTTCAGGGAGAAATATGTGTTGCATATTCTAGATGTTTTGTCCAAGAAGGGATTTACGATGAATTTGAGAAGAAAGTGCTGGAAAAGGTGAAAAATTGGGTCGTTGGTGACCCTTTCGATCCTAAAGTTCAACAAGGACCCCAAGTAAGGATAAGTCACGCAATTACACATCTAGACCGTCTAAGCTCAAATCAATGATCAAGATCATTTGAAATGGATCTACGCACTTTATAATTAGAATCGGAAGGAAATTGTTACCAACATCTCATTTGCACACGATTTTCTTTGCAGACGAGTAAGGCGCAATTTGATAAAATTCTTTCCTATATTAAACATGGAAAGAATGAAGGAGCCACATTATTAACTGGGGGTAAGCAAGTGGGAAACAAAGGATACTACATTGAACCTACTATTTTTACCAATGTTAAGGTATATTTCAACTCTAACAAGAAAAATGAAACCTTATGTCATTCTCATAACTGAACAATAGAACTAATTTTCATTTTTATTTTGAAAATTTGTGTAGGATGACATGCTAATAGCACAAGATGAAATATTTGGACCTGTTATGGCACTTTCTAAGTTCAAGTAAGTATAATTTATATTTCATTTTCGCCATCTTAGTCAAGGTTTTAAATTAGAGTCGCAATAGTATCAAAATTTTAAATATCAAAGAAAATCGTACTCAAATATAGTTCAAGTTAAAGTCTCAGAGACATATAAAACCACCACACTTTTATATTGAAGACATGTCTGATGCCCGATAACACTAACACAATATTGTCGTGCACGTAACCGCATGTGTCAATACTGTGAGTGTTATCAGACATCAGACATGCCTTCAATATAAAGTGTCGGTCAATAACCACGATGTTGCGGCCCAAATTCCGGTCACAAACTTTTTTTAAACCCTGAAATTAGTTTTAAAAGATGTTTATGAATGTGCACCTAAATGTTGAATTAAATATTGAAGGACCATTGAGGAAGGAATTAAGAAGGCCAACAATACCAAATATGGCTTAGCAGCAGGGATTGTGACAAAGAATTTGGATATTGCAAACACTGTTTCAAGGTCAATTCGTGCAGGTATCATTTGGATCAATTGCTATTTTGCCTTTGATATTGATTGCCCTTTTGGAGGGTATAAGATGAGTGGATATGGAAGAGATTATGGATTGGAAGCACTTCACAAGTATCTTCAAGTTAAATCTGTTGCAACTCCTATTTACAATTCTCCATGGCTTTGA
Protein sequence

>MS.gene05526.t1

MANHSILDSFVKIPTIKFKKLFINGEFVDSVSGKTFETVDPRTEEVITKIAEATKEDVDIAVKAAREAFDNGPWPRMPGAERAKIMVKWATLIEQNQEEIAALDTIDGGKLYSWCKTIDVPEAANILRYYAGAADKVHGEVFKTSRNLHMYTLMEPIGVVGHIIPWNFPTVMFFAKAAPCLAAGCTMVLKPAEQTPLSSLFFAHLAKEAGIPDGVLNVLPGFGSTAGAAITSHIDIDAVSFTGSTETGRRVMQAAAISNLKPVSLELGGKSPVLIFDDADVDKAVDLALFGILHNKGEICVAYSRCFVQEGIYDEFEKKVLEKVKNWVVGDPFDPKVQQGPQTSKAQFDKILSYIKHGKNEGATLLTGGKQVGNKGYYIEPTIFTNVKDDMLIAQDEIFGPVMALSKFKTIEEGIKKANNTKYGLAAGIVTKNLDIANTVSRSIRAGIIWINCYFAFDIDCPFGGYKMSGYGRDYGLEALHKYLQVKSVATPIYNSPWL