AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61417

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61417.t1 MTR_6g086340 97.600 500 11 1 1 499 1 500 0.0 1003
MS.gene61417.t1 MTR_6g086300 82.004 489 88 0 11 499 14 502 0.0 830
MS.gene61417.t1 MTR_6g086300 82.004 489 88 0 11 499 14 502 0.0 830
MS.gene61417.t1 MTR_8g083530 77.189 491 112 0 9 499 13 503 0.0 804
MS.gene61417.t1 MTR_8g083520 75.309 486 87 1 14 499 9 461 0.0 771
MS.gene61417.t1 MTR_8g083520 74.879 414 71 1 86 499 1 381 0.0 651
MS.gene61417.t1 MTR_4g107040 55.258 485 217 0 15 499 60 544 0.0 576
MS.gene61417.t1 MTR_3g078170 55.992 484 213 0 16 499 59 542 0.0 573
MS.gene61417.t1 MTR_8g064170 55.785 484 214 0 16 499 58 541 0.0 570
MS.gene61417.t1 MTR_8g083530 74.850 334 84 0 9 342 13 346 0.0 530
MS.gene61417.t1 MTR_8g064170 51.860 484 201 1 16 499 58 509 0.0 519
MS.gene61417.t1 MTR_3g078170 54.774 398 180 0 16 413 59 456 6.86e-158 456
MS.gene61417.t1 MTR_3g078170 54.424 373 170 0 16 388 59 431 9.00e-146 425
MS.gene61417.t1 MTR_3g078170 54.424 373 170 0 16 388 59 431 1.96e-145 424
MS.gene61417.t1 MTR_3g078550 41.176 493 279 5 15 498 4 494 3.19e-121 365
MS.gene61417.t1 MTR_4g106510 41.734 496 270 7 16 498 5 494 1.00e-118 358
MS.gene61417.t1 MTR_3g078490 40.286 489 281 5 19 498 38 524 2.19e-117 356
MS.gene61417.t1 MTR_3g078550 42.140 458 254 5 50 498 9 464 1.42e-113 344
MS.gene61417.t1 MTR_2g067660 35.729 487 307 5 4 489 33 514 2.71e-101 314
MS.gene61417.t1 MTR_1690s0010 41.040 346 197 5 19 361 9 350 1.18e-76 244
MS.gene61417.t1 MTR_3g078490 39.286 336 195 4 19 347 8 341 8.77e-68 222
MS.gene61417.t1 MTR_2g009750 31.733 479 307 11 22 489 18 487 6.30e-58 200
MS.gene61417.t1 MTR_4g093170 31.942 479 306 11 22 489 45 514 1.41e-57 200
MS.gene61417.t1 MTR_2g009750 31.590 478 308 11 22 489 17 485 1.89e-57 199
MS.gene61417.t1 MTR_2g009750 31.590 478 308 11 22 489 18 486 2.01e-57 199
MS.gene61417.t1 MTR_2g034160 28.753 473 315 10 32 489 62 527 6.56e-57 199
MS.gene61417.t1 MTR_4g131180 29.569 487 320 10 20 497 17 489 2.83e-56 195
MS.gene61417.t1 MTR_1g014320 28.807 486 322 10 22 494 19 493 5.77e-56 194
MS.gene61417.t1 MTR_4g131180 29.705 441 291 8 20 452 17 446 9.86e-54 188
MS.gene61417.t1 MTR_2g042330 27.950 483 331 12 22 496 25 498 1.68e-52 186
MS.gene61417.t1 MTR_1399s0020 27.224 371 218 4 119 487 15 335 2.18e-33 130
MS.gene61417.t1 MTR_8g076480 30.117 342 225 10 153 489 106 438 6.62e-30 122
MS.gene61417.t1 MTR_2g097950 27.896 423 270 16 91 494 51 457 7.27e-28 117
MS.gene61417.t1 MTR_8g094600 25.806 496 328 17 19 496 32 505 2.64e-27 115
MS.gene61417.t1 MTR_1g029840 27.649 387 256 13 109 489 77 445 1.27e-26 113
MS.gene61417.t1 MTR_1g029840 27.649 387 256 13 109 489 77 445 1.94e-26 112
MS.gene61417.t1 MTR_1222s0010 30.530 321 190 15 155 460 105 407 4.97e-26 112
MS.gene61417.t1 MTR_1314s0010 27.954 347 228 9 156 490 1 337 9.01e-25 105
MS.gene61417.t1 MTR_3g088150 26.923 338 237 8 155 489 117 447 2.44e-24 106
MS.gene61417.t1 MTR_2g097950 26.869 428 233 15 91 494 51 422 1.20e-23 103
MS.gene61417.t1 MTR_4g065040 27.687 307 201 9 155 452 104 398 6.91e-19 89.7
MS.gene61417.t1 MTR_0002s0820 44.211 95 45 2 218 304 58 152 9.51e-14 69.3
MS.gene61417.t1 MTR_1g071870 70.732 41 12 0 441 481 227 267 3.35e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61417.t1 AT3G24503 69.796 490 147 1 11 499 12 501 0.0 731
MS.gene61417.t1 AT3G48000 55.579 484 215 0 16 499 55 538 0.0 577
MS.gene61417.t1 AT1G23800 55.579 484 215 0 16 499 51 534 0.0 566
MS.gene61417.t1 AT3G48170 43.461 497 262 8 15 498 4 494 4.10e-138 408
MS.gene61417.t1 AT1G74920 42.600 500 267 7 11 498 3 494 6.77e-133 394
MS.gene61417.t1 AT1G74920 42.400 500 263 8 11 498 3 489 1.19e-130 389
MS.gene61417.t1 AT1G23800 54.054 333 153 0 16 348 51 383 1.68e-124 370
MS.gene61417.t1 AT1G79440 37.527 469 288 4 22 489 56 520 1.62e-99 310
MS.gene61417.t1 AT2G14170 32.985 479 301 11 22 489 8 477 3.92e-63 214
MS.gene61417.t1 AT2G14170 32.985 479 301 11 22 489 117 586 5.03e-62 213
MS.gene61417.t1 AT2G14170 33.713 439 274 9 22 452 117 546 1.86e-61 211
MS.gene61417.t1 AT2G24270 30.572 507 312 13 10 495 7 494 1.46e-58 202
MS.gene61417.t1 AT2G24270 30.572 507 312 13 10 495 7 494 1.67e-58 201
MS.gene61417.t1 AT2G24270 30.572 507 312 13 10 495 7 494 1.67e-58 201
MS.gene61417.t1 AT2G24270 30.572 507 312 13 10 495 47 534 3.94e-58 201
MS.gene61417.t1 AT3G66658 29.114 474 312 11 32 489 62 527 3.97e-54 191
MS.gene61417.t1 AT3G66658 29.114 474 312 11 32 489 62 527 7.97e-54 191
MS.gene61417.t1 AT1G54100 28.601 479 315 13 32 496 32 497 3.70e-53 187
MS.gene61417.t1 AT1G54100 28.601 479 315 13 32 496 32 497 3.70e-53 187
MS.gene61417.t1 AT1G44170 30.303 330 210 11 155 476 48 365 1.46e-29 120
MS.gene61417.t1 AT1G44170 29.738 343 221 11 155 489 111 441 1.92e-29 121
MS.gene61417.t1 AT1G44170 29.738 343 221 11 155 489 111 441 1.92e-29 121
MS.gene61417.t1 AT4G34240 28.916 332 212 11 155 476 32 349 1.46e-23 103
MS.gene61417.t1 AT4G36250 25.850 441 296 15 52 476 2 427 1.63e-23 103
MS.gene61417.t1 AT4G34240 28.916 332 212 11 155 476 174 491 6.03e-23 102
MS.gene61417.t1 AT4G34240 28.916 332 212 11 155 476 159 476 7.93e-23 102
MS.gene61417.t1 AT4G34240 36.424 151 85 6 155 301 174 317 6.02e-11 64.7

Find 109 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTAGCTTCTGCTATTT+TGG 0.126135 6.3:-79787206 None:intergenic
CCTCTTGGTTCTGCTCAATT+AGG 0.146809 6.3:-79788487 None:intergenic
GTAATCACTTCTTCTGTTCT+TGG 0.154923 6.3:-79787184 None:intergenic
TTTGATATTGATTGCCCTTT+TGG 0.202054 6.3:+79791136 MS.gene61417:CDS
TGGGGTCCTTGTTGAACTTT+AGG 0.227903 6.3:-79790141 None:intergenic
CCCTGCTGCTAAGCCATATT+TGG 0.239067 6.3:-79791029 None:intergenic
GCTGTTGATCTTGCTCTATT+TGG 0.241282 6.3:+79789908 MS.gene61417:CDS
CTCTTGGTTCTGCTCAATTA+GGG 0.242841 6.3:-79788486 None:intergenic
AGGGATTGTGACAAAGAATT+TGG 0.263862 6.3:+79791048 MS.gene61417:CDS
ATTCATCGTAAATCCCTTCT+TGG 0.275084 6.3:-79790062 None:intergenic
ATAGCACAAGATGAAATATT+TGG 0.277460 6.3:+79790559 MS.gene61417:CDS
TGAAATATTTGGACCTGTTA+TGG 0.283168 6.3:+79790570 MS.gene61417:CDS
AAGCCGGTATCACTTGAATT+AGG 0.284307 6.3:+79789839 MS.gene61417:CDS
AGTGGATATGGAAGAGATTA+TGG 0.289197 6.3:+79791172 MS.gene61417:CDS
AGCAATATCAACATCTTCTT+TGG 0.291243 6.3:-79787224 None:intergenic
ATAGGAGAGAGCAAAGATTA+TGG 0.291747 6.3:+79788451 MS.gene61417:intron
GAATTCGTGGACTCAGTTTC+AGG 0.291763 6.3:+79786273 MS.gene61417:CDS
CACTTCTCCATGAACTTTAT+CGG 0.292029 6.3:-79788615 None:intergenic
ATTCTTTCCATGTTTAATAT+AGG 0.304720 6.3:-79790343 None:intergenic
GAGAAGTGTTCAAAACTTCT+AGG 0.308999 6.3:+79788630 MS.gene61417:CDS
TGCTAAGGCTGCTCCTTGTT+TGG 0.309023 6.3:+79788736 MS.gene61417:CDS
TTTGGCTGCTGGTTGTACTA+TGG 0.321522 6.3:+79788754 MS.gene61417:CDS
GGGTATAAGATGAGTGGATA+TGG 0.326692 6.3:+79791160 MS.gene61417:CDS
AAGGCCAACAATACCAAATA+TGG 0.331879 6.3:+79791016 MS.gene61417:CDS
ATTTGGTATCCTACACAATA+AGG 0.342928 6.3:+79789925 MS.gene61417:CDS
GAAGGAGCCACATTATTAAC+TGG 0.343248 6.3:+79790366 MS.gene61417:CDS
TAAGCCATATTTGGTATTGT+TGG 0.347953 6.3:-79791020 None:intergenic
CATTACTCGTCGGCCTGTTT+CGG 0.348977 6.3:-79789792 None:intergenic
CGTAGTATATTGGCTGCTTC+AGG 0.349726 6.3:-79788575 None:intergenic
CTCAATGTACTGCCAGGATT+TGG 0.358680 6.3:+79789605 MS.gene61417:CDS
AACTGTTATGTTCTTTGCTA+AGG 0.366049 6.3:+79788721 MS.gene61417:CDS
GAGCAAAGATTATGGTGAAA+TGG 0.367613 6.3:+79788459 MS.gene61417:CDS
CTTCTTAATTCCTTCCTCAA+TGG 0.367868 6.3:-79790996 None:intergenic
TTTACAGGTTCAACCGAAAC+AGG 0.372506 6.3:+79789779 MS.gene61417:CDS
CAATTCGTGCAGGTATCATT+TGG 0.382886 6.3:+79791095 MS.gene61417:CDS
CCAGGATTTGGTTCAACTGC+TGG 0.389889 6.3:+79789617 MS.gene61417:CDS
GAGAGAGGTGTTTGCTCAGC+AGG 0.397287 6.3:-79788785 None:intergenic
GCTGCTCCTTGTTTGGCTGC+TGG 0.401272 6.3:+79788743 MS.gene61417:CDS
CCAATGCTGCTATTTCCTCT+TGG 0.405103 6.3:-79788502 None:intergenic
ATGGAACCTATTGGTGTTGT+TGG 0.410360 6.3:+79788674 MS.gene61417:CDS
AGCCATGGAGAATTGTAAAT+AGG 0.411898 6.3:-79791241 None:intergenic
ACCAAATATGGCTTAGCAGC+AGG 0.418744 6.3:+79791028 MS.gene61417:CDS
GCAAGAGAAGCATTTGATAA+TGG 0.419949 6.3:+79787256 MS.gene61417:CDS
TCTTCATATGTATACCTTGA+TGG 0.424173 6.3:+79788655 MS.gene61417:CDS
GGCATAGTAACGTAGTATAT+TGG 0.429138 6.3:-79788585 None:intergenic
AGCAAAGATTATGGTGAAAT+GGG 0.429763 6.3:+79788460 MS.gene61417:CDS
AACTTAGAAAGTGCCATAAC+AGG 0.431254 6.3:-79790583 None:intergenic
ATGTGTCCAACAACACCAAT+AGG 0.433262 6.3:-79788680 None:intergenic
CTCATCTTATACCCTCCAAA+AGG 0.454556 6.3:-79791151 None:intergenic
CCAAGAGGAAATAGCAGCAT+TGG 0.454749 6.3:+79788502 MS.gene61417:CDS
CCTCCTAATTCAAGTGATAC+CGG 0.483272 6.3:-79789842 None:intergenic
CCAGCAGTTGAACCAAATCC+TGG 0.484916 6.3:-79789617 None:intergenic
GCATCATCGAAAATTAAAAC+AGG 0.485279 6.3:-79789872 None:intergenic
AGATGAAAGTTTCAAAGCCA+TGG 0.490561 6.3:-79791256 None:intergenic
AGCTGCAATAACCTCACATA+TGG 0.491405 6.3:+79789640 MS.gene61417:CDS
GGTGCAGCCGATAAAGTTCA+TGG 0.492690 6.3:+79788608 MS.gene61417:CDS
ATATTGCAAACACTGTTTCA+AGG 0.493347 6.3:+79791071 MS.gene61417:CDS
GCAGCATTGGATACAATTGA+TGG 0.494635 6.3:+79788515 MS.gene61417:CDS
TGAGAAGAAAGTGCTGGAAA+AGG 0.495795 6.3:+79790086 MS.gene61417:CDS
TTTCATCAATGGAGAATTCG+TGG 0.498461 6.3:+79786260 MS.gene61417:CDS
AGTACATTGAGCACTCCATC+TGG 0.505876 6.3:-79789593 None:intergenic
ATTAAACATGGAAAGAATGA+AGG 0.512041 6.3:+79790348 MS.gene61417:CDS
GGTCCATGGCCACGTATGCC+TGG 0.518148 6.3:+79787277 MS.gene61417:CDS
AACAGGCCGACGAGTAATGC+AGG 0.523655 6.3:+79789796 MS.gene61417:CDS
ATCTAGGCTGGTATTCCAGA+TGG 0.526428 6.3:+79789578 MS.gene61417:intron
CTCCTATTTACAATTCTCCA+TGG 0.530023 6.3:+79791239 MS.gene61417:CDS
TGAATTTGAGAAGAAAGTGC+TGG 0.530067 6.3:+79790080 MS.gene61417:CDS
AAAATTATACCTTATTGTGT+AGG 0.532177 6.3:-79789934 None:intergenic
TAGCAAAGAACATAACAGTT+GGG 0.536617 6.3:-79788718 None:intergenic
ATTCTTTCCTATATTAAACA+TGG 0.538136 6.3:+79790336 MS.gene61417:CDS
ATATGGAAGAGATTATGGAT+TGG 0.550655 6.3:+79791177 MS.gene61417:CDS
TATACCTTGATGGAACCTAT+TGG 0.551777 6.3:+79788665 MS.gene61417:CDS
CCAAATATGGCTTAGCAGCA+GGG 0.551779 6.3:+79791029 MS.gene61417:CDS
TGTTGAACTTTAGGATCGAA+AGG 0.551857 6.3:-79790132 None:intergenic
GCACCAGGCATACGTGGCCA+TGG 0.554932 6.3:-79787280 None:intergenic
GGAGTGCTCAATGTACTGCC+AGG 0.556694 6.3:+79789599 MS.gene61417:CDS
GTTGAACTTTAGGATCGAAA+GGG 0.558232 6.3:-79790131 None:intergenic
GTTTCAAGGTCAATTCGTGC+AGG 0.564958 6.3:+79791085 MS.gene61417:CDS
AAAAGGGCAATCAATATCAA+AGG 0.565522 6.3:-79791134 None:intergenic
TTGTTGGACACATTATACCT+TGG 0.569907 6.3:+79788690 MS.gene61417:CDS
GTTGAAATATACCTTAACAT+TGG 0.572651 6.3:-79790439 None:intergenic
TAAATATTGAAGGACCATTG+AGG 0.573357 6.3:+79790982 MS.gene61417:intron
ATGAACTTTATCGGCTGCAC+CGG 0.573497 6.3:-79788606 None:intergenic
GGTAAGCAAGTGGGAAACAA+AGG 0.576032 6.3:+79790390 MS.gene61417:CDS
AATATACTACGTTACTATGC+CGG 0.579954 6.3:+79788587 MS.gene61417:CDS
TTAGCAAAGAACATAACAGT+TGG 0.580072 6.3:-79788719 None:intergenic
AGATTTGAACTTACAGCACC+AGG 0.585736 6.3:-79787295 None:intergenic
TTTGGAGGGTATAAGATGAG+TGG 0.586902 6.3:+79791154 MS.gene61417:CDS
TCATCTTATACCCTCCAAAA+GGG 0.587155 6.3:-79791150 None:intergenic
AAGGAGCCACATTATTAACT+GGG 0.587465 6.3:+79790367 MS.gene61417:CDS
ATAACAGTTGGGAAATTCCA+AGG 0.594259 6.3:-79788707 None:intergenic
ATGGAGGGAAACTATACAGT+TGG 0.597500 6.3:+79788534 MS.gene61417:CDS
AGCAATCAGTAATTTGAAGC+CGG 0.598291 6.3:+79789823 MS.gene61417:CDS
CTGCAGCCTGCATTACTCGT+CGG 0.606495 6.3:-79789802 None:intergenic
CCGGTATCACTTGAATTAGG+AGG 0.607860 6.3:+79789842 MS.gene61417:CDS
TATTGAAGGACCATTGAGGA+AGG 0.617304 6.3:+79790986 MS.gene61417:intron
AACACCAATAGGTTCCATCA+AGG 0.617496 6.3:-79788669 None:intergenic
TATAGTTGGAATCTTTACAA+AGG 0.617841 6.3:-79786223 None:intergenic
CATTGAGGAAGGAATTAAGA+AGG 0.621050 6.3:+79790997 MS.gene61417:CDS
TGCATCAATGTCCATATGTG+AGG 0.622090 6.3:-79789651 None:intergenic
AAGCATTTGATAATGGTCCA+TGG 0.623184 6.3:+79787263 MS.gene61417:CDS
CTTACAGCACCAGGCATACG+TGG 0.623863 6.3:-79787286 None:intergenic
GCATTGGATACAATTGATGG+AGG 0.635584 6.3:+79788518 MS.gene61417:CDS
GTACAACCAGCAGCCAAACA+AGG 0.643727 6.3:-79788749 None:intergenic
CATTGGATACAATTGATGGA+GGG 0.663451 6.3:+79788519 MS.gene61417:CDS
TTCGATCCTAAAGTTCAACA+AGG 0.679226 6.3:+79790135 MS.gene61417:CDS
CCTAATTGAGCAGAACCAAG+AGG 0.679930 6.3:+79788487 MS.gene61417:CDS
AGGAGCCACATTATTAACTG+GGG 0.700677 6.3:+79790368 MS.gene61417:CDS
GGAGCCACATTATTAACTGG+GGG 0.710041 6.3:+79790369 MS.gene61417:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATAAATGTAATCAA+AGG - chr6.3:79787584-79787603 None:intergenic 10.0%
!!! AAAATTTAAATTGACTTTTA+TGG + chr6.3:79787072-79787091 MS.gene61417:intron 10.0%
!!! AGAATATAATTTTTTTTTTG+AGG + chr6.3:79786672-79786691 MS.gene61417:intron 10.0%
!!! GAATATAATTTTTTTTTTGA+GGG + chr6.3:79786673-79786692 MS.gene61417:intron 10.0%
!!! TAATCTTTAAACTTTTTTTT+TGG - chr6.3:79786624-79786643 None:intergenic 10.0%
!!! TTTTTTGTTGAAATAAAAAA+AGG + chr6.3:79787139-79787158 MS.gene61417:intron 10.0%
!! AATGTTGAATTAAATATTGA+AGG + chr6.3:79790972-79790991 MS.gene61417:intron 15.0%
!! ATATTTCATAAATTATTGCA+AGG + chr6.3:79787988-79788007 MS.gene61417:intron 15.0%
!! ATTTGAACAATAAATTTGAA+TGG - chr6.3:79787531-79787550 None:intergenic 15.0%
!! CAATATTTAATTCAACATTT+AGG - chr6.3:79790971-79790990 None:intergenic 15.0%
!! CTTACTTTATATATTTAGTT+AGG - chr6.3:79786585-79786604 None:intergenic 15.0%
!! TATTAAATAACTGATGTATT+TGG + chr6.3:79787622-79787641 MS.gene61417:intron 15.0%
!! TTAAAGAAAATTTATTGAGT+TGG + chr6.3:79788845-79788864 MS.gene61417:intron 15.0%
!!! AGAAAATTATATATTTCTAC+AGG - chr6.3:79788170-79788189 None:intergenic 15.0%
!!! ATCTTTTAAAACTAATTTCA+GGG - chr6.3:79790933-79790952 None:intergenic 15.0%
!!! GGAAATATAATTCTTTTATA+TGG + chr6.3:79786694-79786713 MS.gene61417:intron 15.0%
!!! TTTATTTTGAAAATTTGTGT+AGG + chr6.3:79790525-79790544 MS.gene61417:intron 15.0%
!! AAAATTATACCTTATTGTGT+AGG - chr6.3:79789937-79789956 None:intergenic 20.0%
!! AAAGGTTTAAAAGTAGAAAT+AGG - chr6.3:79789513-79789532 None:intergenic 20.0%
!! ACGAAAATTAAAAAGAATTG+AGG - chr6.3:79786328-79786347 None:intergenic 20.0%
!! ACTATTAGAAAAAATGACAT+TGG + chr6.3:79786953-79786972 MS.gene61417:intron 20.0%
!! AGAAAGACAAAAAATATGTA+AGG + chr6.3:79788127-79788146 MS.gene61417:intron 20.0%
!! ATGAATTATTGTTTGTCAAA+TGG - chr6.3:79786529-79786548 None:intergenic 20.0%
!! ATTCTTTCCATGTTTAATAT+AGG - chr6.3:79790346-79790365 None:intergenic 20.0%
!! ATTCTTTCCTATATTAAACA+TGG + chr6.3:79790336-79790355 MS.gene61417:CDS 20.0%
!! GAAAATTACAAAGTTACTTA+AGG - chr6.3:79790005-79790024 None:intergenic 20.0%
!! TCAACTATCAAAATTCAATT+TGG + chr6.3:79786891-79786910 MS.gene61417:intron 20.0%
!! TGATATACTTATATGCATAT+TGG + chr6.3:79787115-79787134 MS.gene61417:intron 20.0%
!! TGTCAAATCATAGATATATA+GGG + chr6.3:79787016-79787035 MS.gene61417:intron 20.0%
!! TTAACATTGGTAAAAATAGT+AGG - chr6.3:79790429-79790448 None:intergenic 20.0%
!! TTCACAAAATAATTTCATGT+GGG + chr6.3:79787764-79787783 MS.gene61417:intron 20.0%
!! TTGTAAAATTGTCATTGTTA+AGG - chr6.3:79787851-79787870 None:intergenic 20.0%
!! TTGTCAAATCATAGATATAT+AGG + chr6.3:79787015-79787034 MS.gene61417:intron 20.0%
!! TTTCACAAAATAATTTCATG+TGG + chr6.3:79787763-79787782 MS.gene61417:intron 20.0%
!!! AAGTAACTTTGTAATTTTCA+GGG + chr6.3:79790006-79790025 MS.gene61417:intron 20.0%
!!! AATACTTTTTTTTCCAACAT+TGG + chr6.3:79787353-79787372 MS.gene61417:intron 20.0%
!!! AATGTCATTTTTTCTAATAG+TGG - chr6.3:79786954-79786973 None:intergenic 20.0%
!!! AATTTTCTTCAAGGAAAATT+TGG + chr6.3:79789951-79789970 MS.gene61417:intron 20.0%
!!! AGATTCTAGAAAATTATATC+AGG - chr6.3:79789062-79789081 None:intergenic 20.0%
!!! AGCTTTTTAAACTTTATAGT+TGG - chr6.3:79786240-79786259 None:intergenic 20.0%
!!! ATAAGGTATAATTTTCTTCA+AGG + chr6.3:79789942-79789961 MS.gene61417:intron 20.0%
!!! ATATATTTTCATCCATGTAT+TGG - chr6.3:79789460-79789479 None:intergenic 20.0%
!!! ATTTTTTCTAATAGTGGAAA+TGG - chr6.3:79786948-79786967 None:intergenic 20.0%
!!! CAACTTGTGATATAATTTTT+GGG + chr6.3:79786985-79787004 MS.gene61417:intron 20.0%
!!! CATCTTTTAAAACTAATTTC+AGG - chr6.3:79790934-79790953 None:intergenic 20.0%
!!! GAATTGATTTTTGACATTTT+TGG + chr6.3:79787427-79787446 MS.gene61417:intron 20.0%
!!! GATTCTAGAAAATTATATCA+GGG - chr6.3:79789061-79789080 None:intergenic 20.0%
!!! GGATTTTAAAATCCAAAATA+GGG - chr6.3:79788220-79788239 None:intergenic 20.0%
!!! TAAGTAACTTTGTAATTTTC+AGG + chr6.3:79790005-79790024 MS.gene61417:intron 20.0%
!!! TACTATTTTTACCAATGTTA+AGG + chr6.3:79790428-79790447 MS.gene61417:CDS 20.0%
!!! TCAACTTGTGATATAATTTT+TGG + chr6.3:79786984-79787003 MS.gene61417:intron 20.0%
!!! TGTTACACAAACTTTAAAAT+AGG - chr6.3:79787324-79787343 None:intergenic 20.0%
!!! TTTAAAAAGCTTTTCATCAA+TGG + chr6.3:79786249-79786268 MS.gene61417:CDS 20.0%
! AAAATTGTCATTGTTAAGGT+TGG - chr6.3:79787847-79787866 None:intergenic 25.0%
! AAATTCACAATCAAGCAATT+TGG + chr6.3:79788947-79788966 MS.gene61417:intron 25.0%
! AATATTGTGTTAGTGTTATC+GGG - chr6.3:79790783-79790802 None:intergenic 25.0%
! ACAAAGTGACATTTGTAAAA+AGG - chr6.3:79789531-79789550 None:intergenic 25.0%
! ACGCACTTTATAATTAGAAT+CGG + chr6.3:79790242-79790261 MS.gene61417:intron 25.0%
! ACTTTATAATTAGAATCGGA+AGG + chr6.3:79790246-79790265 MS.gene61417:intron 25.0%
! AGATCAAATCTACTCAAAAA+CGG - chr6.3:79787874-79787893 None:intergenic 25.0%
! ATAGCACAAGATGAAATATT+TGG + chr6.3:79790559-79790578 MS.gene61417:CDS 25.0%
! ATATAATCCGAAATGTTGTA+AGG + chr6.3:79788293-79788312 MS.gene61417:intron 25.0%
! ATGATCAAGATCATTTGAAA+TGG + chr6.3:79790215-79790234 MS.gene61417:intron 25.0%
! ATGTCTTCAATATAAAAGTG+TGG - chr6.3:79790752-79790771 None:intergenic 25.0%
! ATTAAACATGGAAAGAATGA+AGG + chr6.3:79790348-79790367 MS.gene61417:CDS 25.0%
! ATTTGGCATCATATTAAGAT+TGG - chr6.3:79789349-79789368 None:intergenic 25.0%
! CAATATTGTGTTAGTGTTAT+CGG - chr6.3:79790784-79790803 None:intergenic 25.0%
! GTCAAATCATAGATATATAG+GGG + chr6.3:79787017-79787036 MS.gene61417:intron 25.0%
! GTTGAAATATACCTTAACAT+TGG - chr6.3:79790442-79790461 None:intergenic 25.0%
! GTTTAAAAAAAGTTTGTGAC+CGG - chr6.3:79790911-79790930 None:intergenic 25.0%
! TAAGAGATTGAGTTTATGTT+AGG + chr6.3:79787798-79787817 MS.gene61417:intron 25.0%
! TATAGTTGGAATCTTTACAA+AGG - chr6.3:79786226-79786245 None:intergenic 25.0%
! TGAGTTTATGTTAGGAAATA+CGG + chr6.3:79787806-79787825 MS.gene61417:intron 25.0%
!! ATTTAAAACCTTGACTAAGA+TGG - chr6.3:79790639-79790658 None:intergenic 25.0%
!! CAACATGCATTAATTTGATA+TGG + chr6.3:79788414-79788433 MS.gene61417:intron 25.0%
!! TTGAATCTGATTTTCAAAGT+CGG + chr6.3:79789014-79789033 MS.gene61417:intron 25.0%
!!! CGGATTTTAAAATCCAAAAT+AGG - chr6.3:79788221-79788240 None:intergenic 25.0%
!!! GGATTTTAAAATCCGAAAAA+TGG + chr6.3:79788226-79788245 MS.gene61417:intron 25.0%
!!! TTGACATTTTTGGTTGTTAT+CGG + chr6.3:79787437-79787456 MS.gene61417:intron 25.0%
AAAAAATACACACCACACAA+AGG - chr6.3:79786553-79786572 None:intergenic 30.0%
AAAAATGGAGAGTTTATGGA+GGG + chr6.3:79788241-79788260 MS.gene61417:intron 30.0%
AAAAGGGCAATCAATATCAA+AGG - chr6.3:79791137-79791156 None:intergenic 30.0%
AACTCAATCTCTTATAGAAG+TGG - chr6.3:79787792-79787811 None:intergenic 30.0%
AACTGTTATGTTCTTTGCTA+AGG + chr6.3:79788721-79788740 MS.gene61417:CDS 30.0%
AAGGTGATCACAATAAAAGA+GGG + chr6.3:79788065-79788084 MS.gene61417:intron 30.0%
AATATACTACGTTACTATGC+CGG + chr6.3:79788587-79788606 MS.gene61417:CDS 30.0%
ACTCAATCTCTTATAGAAGT+GGG - chr6.3:79787791-79787810 None:intergenic 30.0%
AGCAAAGATTATGGTGAAAT+GGG + chr6.3:79788460-79788479 MS.gene61417:CDS 30.0%
AGCAATATCAACATCTTCTT+TGG - chr6.3:79787227-79787246 None:intergenic 30.0%
AGCGTAAAAAAACGAATTTG+TGG + chr6.3:79787905-79787924 MS.gene61417:intron 30.0%
ATATGGAAGAGATTATGGAT+TGG + chr6.3:79791177-79791196 MS.gene61417:CDS 30.0%
ATATTGCAAACACTGTTTCA+AGG + chr6.3:79791071-79791090 MS.gene61417:CDS 30.0%
ATCACGGATACATTATCATA+CGG + chr6.3:79789185-79789204 MS.gene61417:intron 30.0%
ATGCCTTCAATATAAAGTGT+CGG + chr6.3:79790856-79790875 MS.gene61417:intron 30.0%
ATTTGGTATCCTACACAATA+AGG + chr6.3:79789925-79789944 MS.gene61417:CDS 30.0%
CAAGGATATTTGATATCTTG+AGG + chr6.3:79786439-79786458 MS.gene61417:intron 30.0%
CAATAATTCATACCTTTGTG+TGG + chr6.3:79786538-79786557 MS.gene61417:intron 30.0%
CATAAACGCATTAGATACAA+AGG - chr6.3:79789151-79789170 None:intergenic 30.0%
CATGAAATGTCAATTAAGTG+AGG - chr6.3:79786361-79786380 None:intergenic 30.0%
CATTACATTTCACACAAACT+AGG + chr6.3:79789716-79789735 MS.gene61417:intron 30.0%
CTATGAATTCTCTTACTACA+AGG - chr6.3:79789233-79789252 None:intergenic 30.0%
GAATTCATAGTCAATCAGTT+TGG + chr6.3:79789243-79789262 MS.gene61417:intron 30.0%
GCATCATCGAAAATTAAAAC+AGG - chr6.3:79789875-79789894 None:intergenic 30.0%
GTAAGCTATCCTATCTAAAT+TGG - chr6.3:79789274-79789293 None:intergenic 30.0%
GTTGATCTCTGTATATATCA+TGG - chr6.3:79786876-79786895 None:intergenic 30.0%
TAAATATTGAAGGACCATTG+AGG + chr6.3:79790982-79791001 MS.gene61417:intron 30.0%
TAACATAGTGTTCATGATGT+TGG + chr6.3:79786782-79786801 MS.gene61417:intron 30.0%
TAAGCCATATTTGGTATTGT+TGG - chr6.3:79791023-79791042 None:intergenic 30.0%
TAGCAAAGAACATAACAGTT+GGG - chr6.3:79788721-79788740 None:intergenic 30.0%
TCAGATTCAAAATACCAAGT+CGG - chr6.3:79789004-79789023 None:intergenic 30.0%
TCAGTTATGAGAATGACATA+AGG - chr6.3:79790484-79790503 None:intergenic 30.0%
TCATAGATATATAGGGGTAA+TGG + chr6.3:79787023-79787042 MS.gene61417:intron 30.0%
TCTTCATATGTATACCTTGA+TGG + chr6.3:79788655-79788674 MS.gene61417:CDS 30.0%
TGAAATATTTGGACCTGTTA+TGG + chr6.3:79790570-79790589 MS.gene61417:CDS 30.0%
TGCTTATAAATGTCACAAGA+GGG + chr6.3:79787699-79787718 MS.gene61417:intron 30.0%
TTAGCAAAGAACATAACAGT+TGG - chr6.3:79788722-79788741 None:intergenic 30.0%
TTCGGATTATATAACTCGAA+AGG - chr6.3:79788285-79788304 None:intergenic 30.0%
TTGCTTATAAATGTCACAAG+AGG + chr6.3:79787698-79787717 MS.gene61417:intron 30.0%
TTTATGAGTAGTCATCTAGT+TGG + chr6.3:79788033-79788052 MS.gene61417:intron 30.0%
! AAATTATATCAGGGTGTTAC+AGG - chr6.3:79789052-79789071 None:intergenic 30.0%
! AACGAATTTGTGGATTTTCT+TGG + chr6.3:79787915-79787934 MS.gene61417:intron 30.0%
! GGAAATGGAATGCATATTTT+TGG - chr6.3:79786933-79786952 None:intergenic 30.0%
! TCTTCAATATAAAAGTGTGG+TGG - chr6.3:79790749-79790768 None:intergenic 30.0%
! TTTCTTTCTCCTTTTCATCT+AGG + chr6.3:79789562-79789581 MS.gene61417:intron 30.0%
!! TCCATAAACTCTCCATTTTT+CGG - chr6.3:79788241-79788260 None:intergenic 30.0%
!! TGGCAAATACTAATTTTGAC+TGG + chr6.3:79789742-79789761 MS.gene61417:intron 30.0%
!! TGTTTAGTTTGTTAGCATCA+CGG + chr6.3:79789169-79789188 MS.gene61417:intron 30.0%
!! TTGAATCCGATTTTGAAAGT+CGG + chr6.3:79789311-79789330 MS.gene61417:intron 30.0%
!! TTTGATATTGATTGCCCTTT+TGG + chr6.3:79791136-79791155 MS.gene61417:CDS 30.0%
!!! CTAATTTTGACTGGTTTTAC+AGG + chr6.3:79789751-79789770 MS.gene61417:intron 30.0%
!!! GATCTTGATTTGTTTTTGAC+GGG + chr6.3:79788924-79788943 MS.gene61417:intron 30.0%
!!! GGATCTTGATTTGTTTTTGA+CGG + chr6.3:79788923-79788942 MS.gene61417:intron 30.0%
!!! TTTTTTTGCTCATCTTGCTA+AGG + chr6.3:79788814-79788833 MS.gene61417:CDS 30.0%
AAAAGTTTGTGACCGGAATT+TGG - chr6.3:79790904-79790923 None:intergenic 35.0%
AAAGTTTGTGACCGGAATTT+GGG - chr6.3:79790903-79790922 None:intergenic 35.0%
AACCAAACATACACCAATGT+TGG - chr6.3:79787369-79787388 None:intergenic 35.0%
AAGGAGCCACATTATTAACT+GGG + chr6.3:79790367-79790386 MS.gene61417:CDS 35.0%
AAGGCCAACAATACCAAATA+TGG + chr6.3:79791016-79791035 MS.gene61417:CDS 35.0%
ACCTTAAATGCCAAGGATTA+GGG - chr6.3:79789405-79789424 None:intergenic 35.0%
AGCCATGGAGAATTGTAAAT+AGG - chr6.3:79791244-79791263 None:intergenic 35.0%
AGGGATTGTGACAAAGAATT+TGG + chr6.3:79791048-79791067 MS.gene61417:CDS 35.0%
AGTGGATATGGAAGAGATTA+TGG + chr6.3:79791172-79791191 MS.gene61417:CDS 35.0%
ATAACAGTTGGGAAATTCCA+AGG - chr6.3:79788710-79788729 None:intergenic 35.0%
ATAGGAGAGAGCAAAGATTA+TGG + chr6.3:79788451-79788470 MS.gene61417:intron 35.0%
ATGGTCATGAACTGTTTGAT+AGG + chr6.3:79788433-79788452 MS.gene61417:intron 35.0%
ATTCATCGTAAATCCCTTCT+TGG - chr6.3:79790065-79790084 None:intergenic 35.0%
ATTTCACACAAACTAGGCAT+TGG + chr6.3:79789722-79789741 MS.gene61417:intron 35.0%
CAACTCAAATTACAAGTGCA+AGG + chr6.3:79786421-79786440 MS.gene61417:intron 35.0%
CAAGGTGATCACAATAAAAG+AGG + chr6.3:79788064-79788083 MS.gene61417:intron 35.0%
CACTTCTCCATGAACTTTAT+CGG - chr6.3:79788618-79788637 None:intergenic 35.0%
CACTTTCCGACTTTCAAAAT+CGG - chr6.3:79789320-79789339 None:intergenic 35.0%
CATTAACACCTTAAATGCCA+AGG - chr6.3:79789412-79789431 None:intergenic 35.0%
CATTGAGGAAGGAATTAAGA+AGG + chr6.3:79790997-79791016 MS.gene61417:CDS 35.0%
CATTGGATACAATTGATGGA+GGG + chr6.3:79788519-79788538 MS.gene61417:CDS 35.0%
CGGATTCAAATATACCAAGT+TGG - chr6.3:79789300-79789319 None:intergenic 35.0%
CTCCTATTTACAATTCTCCA+TGG + chr6.3:79791239-79791258 MS.gene61417:CDS 35.0%
CTTAGCAAATGTTCTCAACT+AGG + chr6.3:79788388-79788407 MS.gene61417:intron 35.0%
CTTCTTAATTCCTTCCTCAA+TGG - chr6.3:79790999-79791018 None:intergenic 35.0%
GAAAAATGGAGAGTTTATGG+AGG + chr6.3:79788240-79788259 MS.gene61417:intron 35.0%
GAGCAAAGATTATGGTGAAA+TGG + chr6.3:79788459-79788478 MS.gene61417:CDS 35.0%
GCAAAAAAAAGTGATGAGAG+AGG - chr6.3:79788803-79788822 None:intergenic 35.0%
GCTGGAAAAGGTGAAAAATT+GGG + chr6.3:79790098-79790117 MS.gene61417:CDS 35.0%
GGCATAGTAACGTAGTATAT+TGG - chr6.3:79788588-79788607 None:intergenic 35.0%
GTAATCACTTCTTCTGTTCT+TGG - chr6.3:79787187-79787206 None:intergenic 35.0%
GTTCCTTAATTCATAGCATG+CGG + chr6.3:79788887-79788906 MS.gene61417:intron 35.0%
TATACCTTGATGGAACCTAT+TGG + chr6.3:79788665-79788684 MS.gene61417:CDS 35.0%
TATCATACGGGATATCTTCA+CGG + chr6.3:79789198-79789217 MS.gene61417:intron 35.0%
TCACGGATACATTATCATAC+GGG + chr6.3:79789186-79789205 MS.gene61417:intron 35.0%
TCATCTTATACCCTCCAAAA+GGG - chr6.3:79791153-79791172 None:intergenic 35.0%
TCCGAAAAATGGAGAGTTTA+TGG + chr6.3:79788237-79788256 MS.gene61417:intron 35.0%
TGACCGACACTTTATATTGA+AGG - chr6.3:79790862-79790881 None:intergenic 35.0%
TGCTGGAAAAGGTGAAAAAT+TGG + chr6.3:79790097-79790116 MS.gene61417:CDS 35.0%
TGGACATTGATGCAGTAATT+TGG + chr6.3:79789660-79789679 MS.gene61417:intron 35.0%
TGTATGATCTTGTGACTTCA+GGG + chr6.3:79789116-79789135 MS.gene61417:intron 35.0%
TTAGGAAATACGGTGAGTAT+TGG + chr6.3:79787816-79787835 MS.gene61417:intron 35.0%
TTCCAACATTGGTGTATGTT+TGG + chr6.3:79787364-79787383 MS.gene61417:intron 35.0%
TTCCTTAATTCATAGCATGC+GGG + chr6.3:79788888-79788907 MS.gene61417:intron 35.0%
TTCGATCCTAAAGTTCAACA+AGG + chr6.3:79790135-79790154 MS.gene61417:CDS 35.0%
TTGGACTGTCCAATTTAGAT+AGG + chr6.3:79789262-79789281 MS.gene61417:intron 35.0%
TTGTATGATCTTGTGACTTC+AGG + chr6.3:79789115-79789134 MS.gene61417:intron 35.0%
TTGTTGGACACATTATACCT+TGG + chr6.3:79788690-79788709 MS.gene61417:CDS 35.0%
TTTCATCAATGGAGAATTCG+TGG + chr6.3:79786260-79786279 MS.gene61417:CDS 35.0%
! AGCAATCAGTAATTTGAAGC+CGG + chr6.3:79789823-79789842 MS.gene61417:CDS 35.0%
! ATTTTCTTTGCAGACGAGTA+AGG + chr6.3:79790299-79790318 MS.gene61417:intron 35.0%
! CTAGATGTTTTGTCCAAGAA+GGG + chr6.3:79790049-79790068 MS.gene61417:CDS 35.0%
! CTCTTTTATTGTGATCACCT+TGG - chr6.3:79788066-79788085 None:intergenic 35.0%
! GTTTTACAGGTCAGTTTTAC+AGG + chr6.3:79789764-79789783 MS.gene61417:intron 35.0%
! TCTAGATGTTTTGTCCAAGA+AGG + chr6.3:79790048-79790067 MS.gene61417:CDS 35.0%
! TGAATTTGAGAAGAAAGTGC+TGG + chr6.3:79790080-79790099 MS.gene61417:CDS 35.0%
!! AACTTAGAAAGTGCCATAAC+AGG - chr6.3:79790586-79790605 None:intergenic 35.0%
!! AAGCATTTGATAATGGTCCA+TGG + chr6.3:79787263-79787282 MS.gene61417:CDS 35.0%
!! ATATTGATTGCCCTTTTGGA+GGG + chr6.3:79791140-79791159 MS.gene61417:CDS 35.0%
!! GAGAAGTGTTCAAAACTTCT+AGG + chr6.3:79788630-79788649 MS.gene61417:CDS 35.0%
!! GCAAGAGAAGCATTTGATAA+TGG + chr6.3:79787256-79787275 MS.gene61417:CDS 35.0%
!! GTTGAACTTTAGGATCGAAA+GGG - chr6.3:79790134-79790153 None:intergenic 35.0%
!! TGTTGAACTTTAGGATCGAA+AGG - chr6.3:79790135-79790154 None:intergenic 35.0%
!! TTTGGTAGCTTCTGCTATTT+TGG - chr6.3:79787209-79787228 None:intergenic 35.0%
!!! ATTCGTTTTTTTACGCTTCG+AGG - chr6.3:79787902-79787921 None:intergenic 35.0%
!!! TTCGTTTTTTTACGCTTCGA+GGG - chr6.3:79787901-79787920 None:intergenic 35.0%
AACACCAATAGGTTCCATCA+AGG - chr6.3:79788672-79788691 None:intergenic 40.0%
AAGCCGGTATCACTTGAATT+AGG + chr6.3:79789839-79789858 MS.gene61417:CDS 40.0%
AAGGTGAAAAATTGGGTCGT+TGG + chr6.3:79790105-79790124 MS.gene61417:CDS 40.0%
ACCCTAATCCTTGGCATTTA+AGG + chr6.3:79789401-79789420 MS.gene61417:intron 40.0%
AGATTTGAACTTACAGCACC+AGG - chr6.3:79787298-79787317 None:intergenic 40.0%
AGCTGCAATAACCTCACATA+TGG + chr6.3:79789640-79789659 MS.gene61417:CDS 40.0%
AGGAGCCACATTATTAACTG+GGG + chr6.3:79790368-79790387 MS.gene61417:CDS 40.0%
AGTCACGGAAATCATGCATT+TGG - chr6.3:79789366-79789385 None:intergenic 40.0%
ATCGTGTGCAAATGAGATGT+TGG - chr6.3:79790281-79790300 None:intergenic 40.0%
ATGGAGGGAAACTATACAGT+TGG + chr6.3:79788534-79788553 MS.gene61417:CDS 40.0%
ATGTGTCCAACAACACCAAT+AGG - chr6.3:79788683-79788702 None:intergenic 40.0%
CAATTCGTGCAGGTATCATT+TGG + chr6.3:79791095-79791114 MS.gene61417:CDS 40.0%
CACCTTAAATGCCAAGGATT+AGG - chr6.3:79789406-79789425 None:intergenic 40.0%
CCAGATCATCGTACTAAGAT+CGG - chr6.3:79789092-79789111 None:intergenic 40.0%
CCTCCTAATTCAAGTGATAC+CGG - chr6.3:79789845-79789864 None:intergenic 40.0%
CTCATCTTATACCCTCCAAA+AGG - chr6.3:79791154-79791173 None:intergenic 40.0%
CTTACCCCCAGTTAATAATG+TGG - chr6.3:79790376-79790395 None:intergenic 40.0%
GAAGGAGCCACATTATTAAC+TGG + chr6.3:79790366-79790385 MS.gene61417:CDS 40.0%
GAATACCAGCCTAGATGAAA+AGG - chr6.3:79789574-79789593 None:intergenic 40.0%
GCATTGGATACAATTGATGG+AGG + chr6.3:79788518-79788537 MS.gene61417:CDS 40.0%
GCTGTTGATCTTGCTCTATT+TGG + chr6.3:79789908-79789927 MS.gene61417:CDS 40.0%
GGGTATAAGATGAGTGGATA+TGG + chr6.3:79791160-79791179 MS.gene61417:CDS 40.0%
GTATGATCTTGTGACTTCAG+GGG + chr6.3:79789117-79789136 MS.gene61417:intron 40.0%
TATTGAAGGACCATTGAGGA+AGG + chr6.3:79790986-79791005 MS.gene61417:intron 40.0%
TCCTTAATTCATAGCATGCG+GGG + chr6.3:79788889-79788908 MS.gene61417:intron 40.0%
TGCATCAATGTCCATATGTG+AGG - chr6.3:79789654-79789673 None:intergenic 40.0%
TGCGTGACTTATCCTTACTT+GGG - chr6.3:79790163-79790182 None:intergenic 40.0%
TTGCGTGACTTATCCTTACT+TGG - chr6.3:79790164-79790183 None:intergenic 40.0%
TTTACAGGTTCAACCGAAAC+AGG + chr6.3:79789779-79789798 MS.gene61417:CDS 40.0%
! AATAGGGTGCCTAAGAAGTT+TGG - chr6.3:79788204-79788223 None:intergenic 40.0%
! ACTTCTTAGGCACCCTATTT+TGG + chr6.3:79788205-79788224 MS.gene61417:intron 40.0%
! CATTTTCGCCATCTTAGTCA+AGG + chr6.3:79790628-79790647 MS.gene61417:intron 40.0%
! CGAAAGGTGTAAAAACGTTC+AGG - chr6.3:79788269-79788288 None:intergenic 40.0%
! GCAGCATTGGATACAATTGA+TGG + chr6.3:79788515-79788534 MS.gene61417:CDS 40.0%
! TTCATCCATGTATTGGTGTC+TGG - chr6.3:79789453-79789472 None:intergenic 40.0%
! TTTCTCCTTTTCATCTAGGC+TGG + chr6.3:79789566-79789585 MS.gene61417:intron 40.0%
! TTTGGAGGGTATAAGATGAG+TGG + chr6.3:79791154-79791173 MS.gene61417:CDS 40.0%
! TTTTGCTCATCTTGCTAAGG+AGG + chr6.3:79788817-79788836 MS.gene61417:CDS 40.0%
!! ACTCACAGTATTGACACATG+CGG - chr6.3:79790819-79790838 None:intergenic 40.0%
!! ATGGAACCTATTGGTGTTGT+TGG + chr6.3:79788674-79788693 MS.gene61417:CDS 40.0%
!! CTCTTGGTTCTGCTCAATTA+GGG - chr6.3:79788489-79788508 None:intergenic 40.0%
!! GATATTGATTGCCCTTTTGG+AGG + chr6.3:79791139-79791158 MS.gene61417:CDS 40.0%
!! TGAGAAGAAAGTGCTGGAAA+AGG + chr6.3:79790086-79790105 MS.gene61417:CDS 40.0%
!!! ATCTAGTTGGCTTTTGTCCA+AGG + chr6.3:79788046-79788065 MS.gene61417:intron 40.0%
ACCAAATATGGCTTAGCAGC+AGG + chr6.3:79791028-79791047 MS.gene61417:CDS 45.0%
ACCCCGCATGCTATGAATTA+AGG - chr6.3:79788893-79788912 None:intergenic 45.0%
AGTACATTGAGCACTCCATC+TGG - chr6.3:79789596-79789615 None:intergenic 45.0%
ATCTAGGCTGGTATTCCAGA+TGG + chr6.3:79789578-79789597 MS.gene61417:intron 45.0%
ATTAACTGGGGGTAAGCAAG+TGG + chr6.3:79790380-79790399 MS.gene61417:CDS 45.0%
CATCACCAGACACCAATACA+TGG + chr6.3:79789445-79789464 MS.gene61417:intron 45.0%
CCAAATATGGCTTAGCAGCA+GGG + chr6.3:79791029-79791048 MS.gene61417:CDS 45.0%
CCAAGAGGAAATAGCAGCAT+TGG + chr6.3:79788502-79788521 MS.gene61417:CDS 45.0%
CCGATCTTAGTACGATGATC+TGG + chr6.3:79789089-79789108 MS.gene61417:intron 45.0%
CCGGTATCACTTGAATTAGG+AGG + chr6.3:79789842-79789861 MS.gene61417:CDS 45.0%
CCTAATTGAGCAGAACCAAG+AGG + chr6.3:79788487-79788506 MS.gene61417:CDS 45.0%
CTCAATGTACTGCCAGGATT+TGG + chr6.3:79789605-79789624 MS.gene61417:CDS 45.0%
CTCATCTTGCTAAGGAGGTA+AGG + chr6.3:79788822-79788841 MS.gene61417:intron 45.0%
GAATTCGTGGACTCAGTTTC+AGG + chr6.3:79786273-79786292 MS.gene61417:CDS 45.0%
GCGTGACTTATCCTTACTTG+GGG - chr6.3:79790162-79790181 None:intergenic 45.0%
GCTCTCCTATCTTCATTGCA+CGG - chr6.3:79788974-79788993 None:intergenic 45.0%
GGAGCCACATTATTAACTGG+GGG + chr6.3:79790369-79790388 MS.gene61417:CDS 45.0%
GGATAGCTTACGTTCCAACT+TGG + chr6.3:79789283-79789302 MS.gene61417:intron 45.0%
GGGATCTTAACCCTAATCCT+TGG + chr6.3:79789392-79789411 MS.gene61417:intron 45.0%
GGTAAGCAAGTGGGAAACAA+AGG + chr6.3:79790390-79790409 MS.gene61417:CDS 45.0%
GGTCAATAACCACGATGTTG+CGG + chr6.3:79790877-79790896 MS.gene61417:intron 45.0%
GTTTCAAGGTCAATTCGTGC+AGG + chr6.3:79791085-79791104 MS.gene61417:CDS 45.0%
TGGGGTCCTTGTTGAACTTT+AGG - chr6.3:79790144-79790163 None:intergenic 45.0%
TTAACTGGGGGTAAGCAAGT+GGG + chr6.3:79790381-79790400 MS.gene61417:CDS 45.0%
TTCAACAAGGACCCCAAGTA+AGG + chr6.3:79790148-79790167 MS.gene61417:intron 45.0%
TTGCGCGCCTTACAACATTT+CGG - chr6.3:79788303-79788322 None:intergenic 45.0%
TTGGACCGTGCAATGAAGAT+AGG + chr6.3:79788966-79788985 MS.gene61417:intron 45.0%
! ATGAACTTTATCGGCTGCAC+CGG - chr6.3:79788609-79788628 None:intergenic 45.0%
! CGTAGTATATTGGCTGCTTC+AGG - chr6.3:79788578-79788597 None:intergenic 45.0%
! TTTGGCTGCTGGTTGTACTA+TGG + chr6.3:79788754-79788773 MS.gene61417:CDS 45.0%
!! CCAATGCTGCTATTTCCTCT+TGG - chr6.3:79788505-79788524 None:intergenic 45.0%
!! CCTCTTGGTTCTGCTCAATT+AGG - chr6.3:79788490-79788509 None:intergenic 45.0%
!!! AATTTTTATTTTGAAAAAAT+TGG - chr6.3:79787051-79787070 None:intergenic 5.0%
!!! ATTTTTATTTTGAAAAAATT+GGG - chr6.3:79787050-79787069 None:intergenic 5.0%
!!! TGAAATTTTTTATTTTTTTA+AGG - chr6.3:79786384-79786403 None:intergenic 5.0%
ATGATTTCCGTGACTGCAGG+GGG + chr6.3:79789371-79789390 MS.gene61417:intron 50.0%
CATGATTTCCGTGACTGCAG+GGG + chr6.3:79789370-79789389 MS.gene61417:intron 50.0%
CATTACTCGTCGGCCTGTTT+CGG - chr6.3:79789795-79789814 None:intergenic 50.0%
CCAGCAGTTGAACCAAATCC+TGG - chr6.3:79789620-79789639 None:intergenic 50.0%
CCCTGCTGCTAAGCCATATT+TGG - chr6.3:79791032-79791051 None:intergenic 50.0%
GCATGATTTCCGTGACTGCA+GGG + chr6.3:79789369-79789388 MS.gene61417:intron 50.0%
GCCTAAGAAGTTTGGAGGGT+GGG - chr6.3:79788196-79788215 None:intergenic 50.0%
GCGCAAGAAGCTTGAAGTGT+GGG + chr6.3:79788317-79788336 MS.gene61417:intron 50.0%
GGGTGCCTAAGAAGTTTGGA+GGG - chr6.3:79788200-79788219 None:intergenic 50.0%
GGTGCAGCCGATAAAGTTCA+TGG + chr6.3:79788608-79788627 MS.gene61417:CDS 50.0%
GTACAACCAGCAGCCAAACA+AGG - chr6.3:79788752-79788771 None:intergenic 50.0%
TCCCACCCTCCAAACTTCTT+AGG + chr6.3:79788192-79788211 MS.gene61417:intron 50.0%
TGCATGATTTCCGTGACTGC+AGG + chr6.3:79789368-79789387 MS.gene61417:intron 50.0%
TGCCTAAGAAGTTTGGAGGG+TGG - chr6.3:79788197-79788216 None:intergenic 50.0%
TGCTAAGGCTGCTCCTTGTT+TGG + chr6.3:79788736-79788755 MS.gene61417:CDS 50.0%
! AGGGTGCCTAAGAAGTTTGG+AGG - chr6.3:79788201-79788220 None:intergenic 50.0%
! CCAGGATTTGGTTCAACTGC+TGG + chr6.3:79789617-79789636 MS.gene61417:CDS 50.0%
AACAGGCCGACGAGTAATGC+AGG + chr6.3:79789796-79789815 MS.gene61417:CDS 55.0%
CGATGTTGCGGCCCAAATTC+CGG + chr6.3:79790889-79790908 MS.gene61417:intron 55.0%
CGCGCAAGAAGCTTGAAGTG+TGG + chr6.3:79788316-79788335 MS.gene61417:intron 55.0%
CTGCAGCCTGCATTACTCGT+CGG - chr6.3:79789805-79789824 None:intergenic 55.0%
CTTACAGCACCAGGCATACG+TGG - chr6.3:79787289-79787308 None:intergenic 55.0%
GAATTTGGGCCGCAACATCG+TGG - chr6.3:79790889-79790908 None:intergenic 55.0%
GGAGAGCTCACATTCCGACT+TGG + chr6.3:79788987-79789006 MS.gene61417:intron 55.0%
TAAGATCCCCCCTGCAGTCA+CGG - chr6.3:79789381-79789400 None:intergenic 55.0%
TGATTTCCGTGACTGCAGGG+GGG + chr6.3:79789372-79789391 MS.gene61417:intron 55.0%
! GGAGTGCTCAATGTACTGCC+AGG + chr6.3:79789599-79789618 MS.gene61417:CDS 55.0%
!! GAGAGAGGTGTTTGCTCAGC+AGG - chr6.3:79788788-79788807 None:intergenic 55.0%
GCATGCGGGGTGTATCTTCG+AGG + chr6.3:79788902-79788921 MS.gene61417:intron 60.0%
! GCTGCTCCTTGTTTGGCTGC+TGG + chr6.3:79788743-79788762 MS.gene61417:CDS 60.0%
GCACCAGGCATACGTGGCCA+TGG - chr6.3:79787283-79787302 None:intergenic 65.0%
GGTCCATGGCCACGTATGCC+TGG + chr6.3:79787277-79787296 MS.gene61417:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 79786198 79791267 79786198 ID=MS.gene61417
chr6.3 mRNA 79786198 79791267 79786198 ID=MS.gene61417.t1;Parent=MS.gene61417
chr6.3 exon 79786198 79786294 79786198 ID=MS.gene61417.t1.exon1;Parent=MS.gene61417.t1
chr6.3 CDS 79786198 79786294 79786198 ID=cds.MS.gene61417.t1;Parent=MS.gene61417.t1
chr6.3 exon 79787161 79787303 79787161 ID=MS.gene61417.t1.exon2;Parent=MS.gene61417.t1
chr6.3 CDS 79787161 79787303 79787161 ID=cds.MS.gene61417.t1;Parent=MS.gene61417.t1
chr6.3 exon 79788455 79788838 79788455 ID=MS.gene61417.t1.exon3;Parent=MS.gene61417.t1
chr6.3 CDS 79788455 79788838 79788455 ID=cds.MS.gene61417.t1;Parent=MS.gene61417.t1
chr6.3 exon 79789584 79789673 79789584 ID=MS.gene61417.t1.exon4;Parent=MS.gene61417.t1
chr6.3 CDS 79789584 79789673 79789584 ID=cds.MS.gene61417.t1;Parent=MS.gene61417.t1
chr6.3 exon 79789773 79789946 79789773 ID=MS.gene61417.t1.exon5;Parent=MS.gene61417.t1
chr6.3 CDS 79789773 79789946 79789773 ID=cds.MS.gene61417.t1;Parent=MS.gene61417.t1
chr6.3 exon 79790027 79790164 79790027 ID=MS.gene61417.t1.exon6;Parent=MS.gene61417.t1
chr6.3 CDS 79790027 79790164 79790027 ID=cds.MS.gene61417.t1;Parent=MS.gene61417.t1
chr6.3 exon 79790312 79790449 79790312 ID=MS.gene61417.t1.exon7;Parent=MS.gene61417.t1
chr6.3 CDS 79790312 79790449 79790312 ID=cds.MS.gene61417.t1;Parent=MS.gene61417.t1
chr6.3 exon 79790547 79790608 79790547 ID=MS.gene61417.t1.exon8;Parent=MS.gene61417.t1
chr6.3 CDS 79790547 79790608 79790547 ID=cds.MS.gene61417.t1;Parent=MS.gene61417.t1
chr6.3 exon 79790994 79791267 79790994 ID=MS.gene61417.t1.exon9;Parent=MS.gene61417.t1
chr6.3 CDS 79790994 79791267 79790994 ID=cds.MS.gene61417.t1;Parent=MS.gene61417.t1
Gene Sequence

>MS.gene61417

ATGGCAAATCACAGCATCTTAGACTCCTTTGTAAAGATTCCAACTATAAAGTTTAAAAAGCTTTTCATCAATGGAGAATTCGTGGACTCAGTTTCAGGTTTTTTTCAATTAGTTTCATACATATTTGCCTCAATTCTTTTTAATTTTCGTACAATATTTACCTCACTTAATTGACATTTCATGCCTTAAAAAAATAAAAAATTTCATACATGCTAAGTAAATACAACTCAAATTACAAGTGCAAGGATATTTGATATCTTGAGGCGCAAGTTTAAACTTATAGTTCTCTATTTTTCTACATGTAATATGTGAGATTTTCACAATGTGACCATTTGACAAACAATAATTCATACCTTTGTGTGGTGTGTATTTTTTGCATTGTTTCCTAACTAAATATATAAAGTAAGAGTTTAAAGATTTGAACCAAAAAAAAAGTTTAAAGATTATACGTTGACAAATATGTTTTTATAAGTGAGAATATAATTTTTTTTTTGAGGGAAATATAATTCTTTTATATGGTCATTCAATCATATATTATCATATAGATATTTGTAGATTTTTTTTAAGATATGTTTATTACAAAGTAACATAGTGTTCATGATGTTGGATTGAATAAATGTGTAAAAAGTCATAAATGAAAAATATATAATTGTATAGTCGTTGATGAGAATTTATCCATGATATATACAGAGATCAACTATCAAAATTCAATTTGGATACTATATTTTAGCACCAAAAATATGCATTCCATTTCCACTATTAGAAAAAATGACATTGGACTATATCTCAACTTGTGATATAATTTTTGGGTGTATTCTTGTCAAATCATAGATATATAGGGGTAATGGTCCCAATTTTTTCAAAATAAAAATTTAAAATTTAAATTGACTTTTATGGTTACAAAGTTTTAATTGACTTGATATACTTATATGCATATTGGATTTTTTGTTGAAATAAAAAAAGGAAAAACTTTTGAGACTGTTGATCCAAGAACAGAAGAAGTGATTACCAAAATAGCAGAAGCTACCAAAGAAGATGTTGATATTGCTGTGAAAGCTGCAAGAGAAGCATTTGATAATGGTCCATGGCCACGTATGCCTGGTGCTGTAAGTTCAAATCTTCACCTATTTTAAAGTTTGTGTAACAACATACTCTAATACTTTTTTTTCCAACATTGGTGTATGTTTGGTTTTAATTTTGAATGTGACAAAATTAATTACATAAGTATAGAATTGATTTTTGACATTTTTGGTTGTTATCGGAGAATTGATTTTGCTTGTAGAACAGATTCTAACTTATAATTTGTAGTTTTTGACGCAACAAGATTTTTCCATTCAAATTTATTGTTCAAATCATTTCTAAGTGAACGTATTCAAACATACTCCTTTGATTACATTTATAAATAATTTTTGTTTTTTCAAATTTATTAAATAACTGATGTATTTGGACTATATTATAATCAAGATACATCAGTTATTTAATGAATCTGAAAAAGCAAAATTGCTTATAAATGTCACAAGAGGGAGTAAATCACTTCACAATCAACTTATTTTAACTAAAATCAATTTCACAAAATAATTTCATGTGGGTCCCACTTCTATAAGAGATTGAGTTTATGTTAGGAAATACGGTGAGTATTGGTAGCACCAACCTTAACAATGACAATTTTACAACCGTTTTTGAGTAGATTTGATCTTCATCCCTCGAAGCGTAAAAAAACGAATTTGTGGATTTTCTTGGTGAAAAGTTGCATTAGCAAGCATCATTCATAAATTACTCATTGAACACAAATATTTCATAAATTATTGCAAGGCTACTTTCATTTATTTAACTATTTTATGAGTAGTCATCTAGTTGGCTTTTGTCCAAGGTGATCACAATAAAAGAGGGAACATACTTTTGACATAGTAAAAAATAAAGTGAATATTGAGAAAGACAAAAAATATGTAAGGAATGTATAAAATAAGTGCCTGTAGAAATATATAATTTTCTTTTCCCACCCTCCAAACTTCTTAGGCACCCTATTTTGGATTTTAAAATCCGAAAAATGGAGAGTTTATGGAGGGTTCCTGAACGTTTTTACACCTTTCGAGTTATATAATCCGAAATGTTGTAAGGCGCGCAAGAAGCTTGAAGTGTGGGAAAAGAAACTCGCAAAAAATAATGCTTAACAAATTTTCACACAAAGAACTTAGCAAATGTTCTCAACTAGGAAGCAACATGCATTAATTTGATATGGTCATGAACTGTTTGATAGGAGAGAGCAAAGATTATGGTGAAATGGGCAACCCTAATTGAGCAGAACCAAGAGGAAATAGCAGCATTGGATACAATTGATGGAGGGAAACTATACAGTTGGTGTAAGACAATAGATGTACCTGAAGCAGCCAATATACTACGTTACTATGCCGGTGCAGCCGATAAAGTTCATGGAGAAGTGTTCAAAACTTCTAGGAATCTTCATATGTATACCTTGATGGAACCTATTGGTGTTGTTGGACACATTATACCTTGGAATTTCCCAACTGTTATGTTCTTTGCTAAGGCTGCTCCTTGTTTGGCTGCTGGTTGTACTATGGTTCTTAAGCCTGCTGAGCAAACACCTCTCTCATCACTTTTTTTTGCTCATCTTGCTAAGGAGGTAAGGTTAAAGAAAATTTATTGAGTTGGTTTTGAAAGATTTTTTATAGTTCCTTAATTCATAGCATGCGGGGTGTATCTTCGAGGATCTTGATTTGTTTTTGACGGGAAATTCACAATCAAGCAATTTGGACCGTGCAATGAAGATAGGAGAGCTCACATTCCGACTTGGTATTTTGAATCTGATTTTCAAAGTCGGAACGTGAATAGTCCTGTAACACCCTGATATAATTTTCTAGAATCTTACAAGTCCGATCTTAGTACGATGATCTGGACTTTGTATGATCTTGTGACTTCAGGGGATCTGAATCCTTTGTATCTAATGCGTTTATGTTTAGTTTGTTAGCATCACGGATACATTATCATACGGGATATCTTCACGGATTTTGATTCCTTGTAGTAAGAGAATTCATAGTCAATCAGTTTGGACTGTCCAATTTAGATAGGATAGCTTACGTTCCAACTTGGTATATTTGAATCCGATTTTGAAAGTCGGAAAGTGAAAAGTCCAATCTTAATATGATGCCAAATGCATGATTTCCGTGACTGCAGGGGGGATCTTAACCCTAATCCTTGGCATTTAAGGTGTTAATGTCTAGTTTGTTAGCATCACCAGACACCAATACATGGATGAAAATATATTAGCATATATTCAATTTAAGAAAACTTGTACCTATTTCTACTTTTAAACCTTTTTACAAATGTCACTTTGTTTCATTTCTTGTTTCTTTCTCCTTTTCATCTAGGCTGGTATTCCAGATGGAGTGCTCAATGTACTGCCAGGATTTGGTTCAACTGCTGGAGCTGCAATAACCTCACATATGGACATTGATGCAGTAATTTGGCTTCAATTTTTTTTTTATGACATCGATTAAATGCATTACATTTCACACAAACTAGGCATTGGCAAATACTAATTTTGACTGGTTTTACAGGTCAGTTTTACAGGTTCAACCGAAACAGGCCGACGAGTAATGCAGGCTGCAGCAATCAGTAATTTGAAGCCGGTATCACTTGAATTAGGAGGCAAGTCGCCTGTTTTAATTTTCGATGATGCTGATGTTGATAAAGCTGTTGATCTTGCTCTATTTGGTATCCTACACAATAAGGTATAATTTTCTTCAAGGAAAATTTGGTAACATAAAAAAAGAACAAAGACTTGTTCCTTAAGTAACTTTGTAATTTTCAGGGAGAAATATGTGTTGCATATTCTAGATGTTTTGTCCAAGAAGGGATTTACGATGAATTTGAGAAGAAAGTGCTGGAAAAGGTGAAAAATTGGGTCGTTGGTGACCCTTTCGATCCTAAAGTTCAACAAGGACCCCAAGTAAGGATAAGTCACGCAATTACACATCTAGACCGTCTAAGCTCAAATCAATGATCAAGATCATTTGAAATGGATCTACGCACTTTATAATTAGAATCGGAAGGAAATTGTTACCAACATCTCATTTGCACACGATTTTCTTTGCAGACGAGTAAGGCGCAATTTGATAAAATTCTTTCCTATATTAAACATGGAAAGAATGAAGGAGCCACATTATTAACTGGGGGTAAGCAAGTGGGAAACAAAGGATACTACATTGAACCTACTATTTTTACCAATGTTAAGGTATATTTCAACTCTAACAAGAAAAATGAAACCTTATGTCATTCTCATAACTGAACAATAGAACTAATTTTCATTTTTATTTTGAAAATTTGTGTAGGATGACATGCTAATAGCACAAGATGAAATATTTGGACCTGTTATGGCACTTTCTAAGTTCAAGTAAGTATAATTTATATTTCATTTTCGCCATCTTAGTCAAGGTTTTAAATTAGAGTCGCAATAGTATCAAAATTTTAAATATCAAAGAAAATCGTACTCAAATATAGTTCAAGTTAAAGTCTCAGAGACATATAAAACCACCACACTTTTATATTGAAGACATGTCTGATGCCCGATAACACTAACACAATATTGTCGTGCACGTAACCGCATGTGTCAATACTGTGAGTGTTATCAGACATCAGACATGCCTTCAATATAAAGTGTCGGTCAATAACCACGATGTTGCGGCCCAAATTCCGGTCACAAACTTTTTTTAAACCCTGAAATTAGTTTTAAAAGATGTTTATGAATGTGCACCTAAATGTTGAATTAAATATTGAAGGACCATTGAGGAAGGAATTAAGAAGGCCAACAATACCAAATATGGCTTAGCAGCAGGGATTGTGACAAAGAATTTGGATATTGCAAACACTGTTTCAAGGTCAATTCGTGCAGGTATCATTTGGATCAATTGCTATTTTGCCTTTGATATTGATTGCCCTTTTGGAGGGTATAAGATGAGTGGATATGGAAGAGATTATGGATTGGAAGCACTTCACAAGTATCTTCAAGTTAAATCTGTTGCAACTCCTATTTACAATTCTCCATGGCTTTGA
Protein sequence

>MS.gene61417.t1

MANHSILDSFVKIPTIKFKKLFINGEFVDSVSGKTFETVDPRTEEVITKIAEATKEDVDIAVKAAREAFDNGPWPRMPGAERAKIMVKWATLIEQNQEEIAALDTIDGGKLYSWCKTIDVPEAANILRYYAGAADKVHGEVFKTSRNLHMYTLMEPIGVVGHIIPWNFPTVMFFAKAAPCLAAGCTMVLKPAEQTPLSSLFFAHLAKEAGIPDGVLNVLPGFGSTAGAAITSHMDIDAVSFTGSTETGRRVMQAAAISNLKPVSLELGGKSPVLIFDDADVDKAVDLALFGILHNKGEICVAYSRCFVQEGIYDEFEKKVLEKVKNWVVGDPFDPKVQQGPQTSKAQFDKILSYIKHGKNEGATLLTGGKQVGNKGYYIEPTIFTNVKDDMLIAQDEIFGPVMALSKFKTIEEGIKKANNTKYGLAAGIVTKNLDIANTVSRSIRAGIIWINCYFAFDIDCPFGGYKMSGYGRDYGLEALHKYLQVKSVATPIYNSPWL