AlfalfaGEDB | MS.gene057478

M. sativa cultivar XinJiangDaYe / MS.gene057478

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12937.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057478.t1	XP_003621422.1	98.8	251	3	0	1	251	5	255	8.80E-143	516.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057478.t1	Q9FL82	66.1	254	81	3	1	251	1	252	5.3e-96	352.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057478.t1	B7FID8	98.8	251	3	0	1	251	1	251	6.3e-143	516.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049351	MS.gene057478	-0.806788	6.94E-50	-1.69E-46
MS.gene055277	MS.gene057478	-0.803179	3.95E-49	-1.69E-46
MS.gene057011	MS.gene057478	-0.804429	2.17E-49	-1.69E-46
MS.gene057146	MS.gene057478	-0.812599	3.91E-51	-1.69E-46
MS.gene057478	MS.gene058660	-0.807002	6.25E-50	-1.69E-46
MS.gene057478	MS.gene060818	-0.831879	1.30E-55	-1.69E-46
MS.gene057478	MS.gene061429	-0.824986	6.00E-54	-1.69E-46
MS.gene057478	MS.gene061470	-0.820691	6.00E-53	-1.69E-46
MS.gene057478	MS.gene061476	-0.802364	5.81E-49	-1.69E-46
MS.gene057478	MS.gene061929	-0.812354	4.42E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057478.t1	MTR_7g013160	98.805	251	3	0	1	251	5	255	0.0	513
MS.gene057478.t1	MTR_7g013160	98.805	251	3	0	1	251	1	251	0.0	513

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057478.t1	AT5G39250	66.142	254	81	3	1	251	1	252	3.40e-122	348
MS.gene057478.t1	AT5G39250	66.142	254	81	3	1	251	1	252	3.40e-122	348

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Find 56 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCATCAAAGGAAATTCT+CGG	0.464319	7.2:-84122071	None:intergenic
AACTTGTAGTAGGTTTCAGT+AGG	0.606356	7.2:-84122002	None:intergenic
AAGATCTTATGGATGTATTT+GGG	0.377784	7.2:+84122489	MS.gene057478:CDS
AAGTCACAAACTCCAGAAGC+TGG	0.569927	7.2:-84122182	None:intergenic
AATGTATGTGTGCCAATAGA+TGG	0.548994	7.2:+84121952	MS.gene057478:CDS
ACGGTCATCATATAGAGCGT+TGG	0.609824	7.2:+84122376	MS.gene057478:CDS
ACGTTGTTGGCGTTTATGGA+AGG	0.533624	7.2:-84122033	None:intergenic
AGAGGGAAGTGAAGATCTTA+TGG	0.307374	7.2:+84122478	MS.gene057478:CDS
AGATATCCATGCCCGGATGC+CGG	0.435632	7.2:-84122441	None:intergenic
AGATCAACACCCTCCAGTAA+AGG	0.495696	7.2:-84121867	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCATCTTCGATTATATTGAA+CGG	+	chr7.2:84122357-84122376	MS.gene057478:CDS	30.0%
GAAAAACTCCAAATCATCAA+AGG	-	chr7.2:84122084-84122103	None:intergenic	30.0%
GAAGATCTTATGGATGTATT+TGG	+	chr7.2:84122488-84122507	MS.gene057478:CDS	30.0%
TGAAGATATACTTCTCTTCT+CGG	+	chr7.2:84122118-84122137	MS.gene057478:CDS	30.0%
AACTTGTAGTAGGTTTCAGT+AGG	-	chr7.2:84122005-84122024	None:intergenic	35.0%
AATGTATGTGTGCCAATAGA+TGG	+	chr7.2:84121952-84121971	MS.gene057478:CDS	35.0%
ATAGTAAACCTAGGTTCAAC+CGG	-	chr7.2:84122251-84122270	None:intergenic	35.0%
CCGTTCAATATAATCGAAGA+TGG	-	chr7.2:84122360-84122379	None:intergenic	35.0%
TGTTGATCTTGCTTCTTGTA+TGG	+	chr7.2:84121881-84121900	MS.gene057478:CDS	35.0%
AGAGGGAAGTGAAGATCTTA+TGG	+	chr7.2:84122478-84122497	MS.gene057478:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	84121834	84122589	84121834	ID=MS.gene057478
chr7.2	mRNA	84121834	84122589	84121834	ID=MS.gene057478.t1;Parent=MS.gene057478
chr7.2	exon	84121834	84122589	84121834	ID=MS.gene057478.t1.exon1;Parent=MS.gene057478.t1
chr7.2	CDS	84121834	84122589	84121834	ID=cds.MS.gene057478.t1;Parent=MS.gene057478.t1

Gene Sequence

>MS.gene057478

ATGGAATCTGAAGAAGTTTTGAAGGCTGTTTTCCCTTTACTGGAGGGTGTTGATCTTGCTTCTTGTATGGCTGTCTGTAAGCAGTGGAATGATATAGCTAAAGACGATTTCTTTTGGAAATGTATGTGTGCCAATAGATGGCCATCAATCTGCAAGCGACCTAATCCTCCTACTGAAACCTACTACAAGTTATATAAAACCTTCCATAAACGCCAACAACGTAGAACTCTTCTCCCTCCGAGAATTTCCTTTGATGATTTGGAGTTTTTCATTGACATTTGGGCTGAAGATATACTTCTCTTCTCGGAAGCGGTGTCTGGCTCTGTCCTGCAATCAGGTTTCAGAAGTCCAGCTTCTGGAGTTTGTGACTTGCTCAAATATCACCTCGAGAGTTCTGAATACAAGATGACTTTTCCGGTTGAACCTAGGTTTACTATCCCTTCAGAACAAAATCAGAATGTTAGTGTCTCTGTGATGGTTGGGCGGAAGGATACAAATAAGGTTGCATGCATCATAAACAAGTCCATCTTCGATTATATTGAACGGTCATCATATAGAGCGTTGGCATATGATTACCTAGACATATCCCCTGGCTACCCCTTTTTGCCCGGCATCCGGGCATGGATATCTTTGCTATTCATGGAAGAGGGAAGTGAAGATCTTATGGATGTATTTGGGATCCAAATGGATTTCTGTGATGTGGCAAATTCTAAGGAAGAAGTCTTGTGGCTATTGGACATGCTAGATTGGAAGTGA

Protein sequence

>MS.gene057478.t1

MESEEVLKAVFPLLEGVDLASCMAVCKQWNDIAKDDFFWKCMCANRWPSICKRPNPPTETYYKLYKTFHKRQQRRTLLPPRISFDDLEFFIDIWAEDILLFSEAVSGSVLQSGFRSPASGVCDLLKYHLESSEYKMTFPVEPRFTIPSEQNQNVSVSVMVGRKDTNKVACIINKSIFDYIERSSYRALAYDYLDISPGYPFLPGIRAWISLLFMEEGSEDLMDVFGIQMDFCDVANSKEEVLWLLDMLDWK