Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47835.t1 | XP_003604650.1 | 96.9 | 64 | 2 | 0 | 60 | 123 | 60 | 123 | 1.30E-25 | 125.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47835.t1 | P47910 | 72.3 | 47 | 11 | 1 | 60 | 104 | 54 | 100 | 1.5e-11 | 70.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47835.t1 | G7JN21 | 96.9 | 64 | 2 | 0 | 60 | 123 | 60 | 123 | 9.1e-26 | 125.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene47835 | 0.857981 | 1.13E-62 | -1.69E-46 |
| MS.gene049217 | MS.gene47835 | 0.85184 | 6.83E-61 | -1.69E-46 |
| MS.gene049222 | MS.gene47835 | 0.812262 | 4.63E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene47835 | 0.823838 | 1.12E-53 | -1.69E-46 |
| MS.gene049320 | MS.gene47835 | 0.806677 | 7.32E-50 | -1.69E-46 |
| MS.gene049351 | MS.gene47835 | 0.819224 | 1.30E-52 | -1.69E-46 |
| MS.gene049427 | MS.gene47835 | 0.854472 | 1.20E-61 | -1.69E-46 |
| MS.gene049609 | MS.gene47835 | 0.803075 | 4.14E-49 | -1.69E-46 |
| MS.gene049614 | MS.gene47835 | 0.80291 | 4.48E-49 | -1.69E-46 |
| MS.gene049760 | MS.gene47835 | 0.814697 | 1.35E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene47835 | 0.857835 | 1.24E-62 | -1.69E-46 |
| MS.gene050076 | MS.gene47835 | 0.832268 | 1.04E-55 | -1.69E-46 |
| MS.gene050163 | MS.gene47835 | 0.841992 | 3.39E-58 | -1.69E-46 |
| MS.gene050165 | MS.gene47835 | 0.807492 | 4.92E-50 | -1.69E-46 |
| MS.gene050333 | MS.gene47835 | 0.82157 | 3.76E-53 | -1.69E-46 |
| MS.gene050432 | MS.gene47835 | 0.802559 | 5.30E-49 | -1.69E-46 |
| MS.gene050475 | MS.gene47835 | -0.834671 | 2.62E-56 | -1.69E-46 |
| MS.gene050504 | MS.gene47835 | 0.803176 | 3.95E-49 | -1.69E-46 |
| MS.gene050518 | MS.gene47835 | 0.820608 | 6.27E-53 | -1.69E-46 |
| MS.gene050541 | MS.gene47835 | -0.828762 | 7.51E-55 | -1.69E-46 |
| MS.gene050593 | MS.gene47835 | 0.812962 | 3.26E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene47835 | 0.80128 | 9.70E-49 | -1.69E-46 |
| MS.gene050699 | MS.gene47835 | 0.812964 | 3.25E-51 | -1.69E-46 |
| MS.gene050747 | MS.gene47835 | 0.822155 | 2.76E-53 | -1.69E-46 |
| MS.gene050767 | MS.gene47835 | 0.833285 | 5.82E-56 | -1.69E-46 |
| MS.gene050770 | MS.gene47835 | 0.833456 | 5.28E-56 | -1.69E-46 |
| MS.gene050772 | MS.gene47835 | 0.817519 | 3.16E-52 | -1.69E-46 |
| MS.gene050783 | MS.gene47835 | 0.800096 | 1.69E-48 | -1.69E-46 |
| MS.gene050812 | MS.gene47835 | 0.814327 | 1.63E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene47835 | 0.817792 | 2.74E-52 | -1.69E-46 |
| MS.gene05101 | MS.gene47835 | 0.816026 | 6.84E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene47835 | 0.803445 | 3.47E-49 | -1.69E-46 |
| MS.gene051167 | MS.gene47835 | -0.800034 | 1.74E-48 | -1.69E-46 |
| MS.gene051387 | MS.gene47835 | 0.852793 | 3.66E-61 | -1.69E-46 |
| MS.gene051582 | MS.gene47835 | 0.806629 | 7.50E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene47835 | 0.815505 | 8.93E-52 | -1.69E-46 |
| MS.gene051694 | MS.gene47835 | 0.827055 | 1.93E-54 | -1.69E-46 |
| MS.gene051810 | MS.gene47835 | 0.808186 | 3.50E-50 | -1.69E-46 |
| MS.gene051858 | MS.gene47835 | 0.809288 | 2.04E-50 | -1.69E-46 |
| MS.gene052271 | MS.gene47835 | 0.837295 | 5.66E-57 | -1.69E-46 |
| MS.gene052290 | MS.gene47835 | 0.807334 | 5.32E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene47835 | 0.821115 | 4.79E-53 | -1.69E-46 |
| MS.gene052379 | MS.gene47835 | 0.86504 | 7.88E-65 | -1.69E-46 |
| MS.gene052421 | MS.gene47835 | 0.827918 | 1.20E-54 | -1.69E-46 |
| MS.gene052615 | MS.gene47835 | 0.865094 | 7.57E-65 | -1.69E-46 |
| MS.gene053009 | MS.gene47835 | 0.818315 | 2.09E-52 | -1.69E-46 |
| MS.gene053103 | MS.gene47835 | 0.821488 | 3.93E-53 | -1.69E-46 |
| MS.gene053104 | MS.gene47835 | 0.807472 | 4.97E-50 | -1.69E-46 |
| MS.gene053107 | MS.gene47835 | 0.820152 | 7.98E-53 | -1.69E-46 |
| MS.gene053207 | MS.gene47835 | 0.813201 | 2.89E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene47835 | 0.83566 | 1.47E-56 | -1.69E-46 |
| MS.gene053286 | MS.gene47835 | 0.823581 | 1.28E-53 | -1.69E-46 |
| MS.gene053322 | MS.gene47835 | 0.886622 | 2.91E-72 | -1.69E-46 |
| MS.gene053579 | MS.gene47835 | 0.852544 | 4.31E-61 | -1.69E-46 |
| MS.gene053632 | MS.gene47835 | 0.845564 | 3.75E-59 | -1.69E-46 |
| MS.gene053915 | MS.gene47835 | 0.840428 | 8.75E-58 | -1.69E-46 |
| MS.gene054376 | MS.gene47835 | 0.823139 | 1.63E-53 | -1.69E-46 |
| MS.gene054408 | MS.gene47835 | 0.812312 | 4.52E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene47835 | 0.809809 | 1.57E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene47835 | 0.828972 | 6.68E-55 | -1.69E-46 |
| MS.gene054802 | MS.gene47835 | 0.866856 | 2.10E-65 | -1.69E-46 |
| MS.gene054803 | MS.gene47835 | 0.866258 | 3.25E-65 | -1.69E-46 |
| MS.gene054804 | MS.gene47835 | 0.866909 | 2.02E-65 | -1.69E-46 |
| MS.gene05505 | MS.gene47835 | 0.815753 | 7.87E-52 | -1.69E-46 |
| MS.gene055206 | MS.gene47835 | 0.821169 | 4.66E-53 | -1.69E-46 |
| MS.gene055277 | MS.gene47835 | 0.803556 | 3.29E-49 | -1.69E-46 |
| MS.gene055397 | MS.gene47835 | 0.842588 | 2.36E-58 | -1.69E-46 |
| MS.gene055412 | MS.gene47835 | 0.873485 | 1.42E-67 | -1.69E-46 |
| MS.gene055499 | MS.gene47835 | 0.857108 | 2.04E-62 | -1.69E-46 |
| MS.gene055502 | MS.gene47835 | 0.836535 | 8.84E-57 | -1.69E-46 |
| MS.gene055605 | MS.gene47835 | 0.810948 | 8.94E-51 | -1.69E-46 |
| MS.gene055636 | MS.gene47835 | 0.812627 | 3.86E-51 | -1.69E-46 |
| MS.gene055638 | MS.gene47835 | 0.807809 | 4.22E-50 | -1.69E-46 |
| MS.gene055647 | MS.gene47835 | 0.866588 | 2.55E-65 | -1.69E-46 |
| MS.gene05592 | MS.gene47835 | 0.832591 | 8.66E-56 | -1.69E-46 |
| MS.gene055941 | MS.gene47835 | 0.819082 | 1.40E-52 | -1.69E-46 |
| MS.gene056374 | MS.gene47835 | 0.803722 | 3.04E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene47835 | 0.804399 | 2.20E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene47835 | 0.808347 | 3.24E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene47835 | 0.902783 | 6.81E-79 | -1.69E-46 |
| MS.gene057123 | MS.gene47835 | 0.803759 | 2.99E-49 | -1.69E-46 |
| MS.gene057129 | MS.gene47835 | 0.86442 | 1.23E-64 | -1.69E-46 |
| MS.gene057146 | MS.gene47835 | 0.874082 | 8.92E-68 | -1.69E-46 |
| MS.gene057416 | MS.gene47835 | 0.867264 | 1.56E-65 | -1.69E-46 |
| MS.gene057478 | MS.gene47835 | -0.804614 | 1.98E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene47835 | 0.810454 | 1.14E-50 | -1.69E-46 |
| MS.gene058019 | MS.gene47835 | 0.828995 | 6.59E-55 | -1.69E-46 |
| MS.gene058130 | MS.gene47835 | 0.83611 | 1.13E-56 | -1.69E-46 |
| MS.gene058233 | MS.gene47835 | 0.820643 | 6.15E-53 | -1.69E-46 |
| MS.gene058293 | MS.gene47835 | 0.83738 | 5.38E-57 | -1.69E-46 |
| MS.gene058323 | MS.gene47835 | 0.811069 | 8.42E-51 | -1.69E-46 |
| MS.gene05837 | MS.gene47835 | 0.805601 | 1.23E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene47835 | 0.832092 | 1.15E-55 | -1.69E-46 |
| MS.gene058544 | MS.gene47835 | 0.823759 | 1.17E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene47835 | 0.846268 | 2.42E-59 | -1.69E-46 |
| MS.gene05883 | MS.gene47835 | 0.830541 | 2.77E-55 | -1.69E-46 |
| MS.gene058993 | MS.gene47835 | 0.800473 | 1.42E-48 | -1.69E-46 |
| MS.gene059023 | MS.gene47835 | 0.800452 | 1.43E-48 | -1.69E-46 |
| MS.gene059029 | MS.gene47835 | 0.830819 | 2.37E-55 | -1.69E-46 |
| MS.gene05934 | MS.gene47835 | 0.819436 | 1.16E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene47835 | 0.843901 | 1.05E-58 | -1.69E-46 |
| MS.gene059676 | MS.gene47835 | 0.836225 | 1.06E-56 | -1.69E-46 |
| MS.gene059677 | MS.gene47835 | 0.811872 | 5.63E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene47835 | 0.809314 | 2.01E-50 | -1.69E-46 |
| MS.gene059692 | MS.gene47835 | 0.802785 | 4.76E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene47835 | 0.80994 | 1.48E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene47835 | 0.827414 | 1.59E-54 | -1.69E-46 |
| MS.gene059756 | MS.gene47835 | 0.80867 | 2.76E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene47835 | 0.810996 | 8.73E-51 | -1.69E-46 |
| MS.gene059960 | MS.gene47835 | 0.889626 | 2.05E-73 | -1.69E-46 |
| MS.gene060675 | MS.gene47835 | 0.815875 | 7.39E-52 | -1.69E-46 |
| MS.gene060818 | MS.gene47835 | 0.814497 | 1.50E-51 | -1.69E-46 |
| MS.gene06092 | MS.gene47835 | 0.856169 | 3.86E-62 | -1.69E-46 |
| MS.gene061150 | MS.gene47835 | 0.84482 | 5.97E-59 | -1.69E-46 |
| MS.gene061171 | MS.gene47835 | 0.813161 | 2.94E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene47835 | 0.879179 | 1.54E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47835.t1 | MTR_4g015540 | 95.122 | 123 | 6 | 0 | 1 | 123 | 1 | 123 | 6.14e-71 | 208 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47835.t1 | AT2G38140 | 49.580 | 119 | 58 | 1 | 5 | 123 | 2 | 118 | 4.06e-26 | 94.7 |
Find 39 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCAAGCTTCTCTTTCT+TGG | 0.182199 | 4.4:+84933019 | None:intergenic |
| TCGCTTTCACCAACCCCTTC+TGG | 0.306084 | 4.4:-84933901 | MS.gene47835:intron |
| GTACCCTTGTTCTTGTTCCT+TGG | 0.342529 | 4.4:+84933077 | None:intergenic |
| TTCTCTTTCTTGGTAGCATC+TGG | 0.349140 | 4.4:+84933029 | None:intergenic |
| GAAAGAGAAGCTTGAAGATA+AGG | 0.394365 | 4.4:-84933015 | MS.gene47835:CDS |
| AAACGGTTCAGCCATTCGTT+TGG | 0.400874 | 4.4:-84933732 | MS.gene47835:CDS |
| TGTATTGTGGCAGAGGTGAT+AGG | 0.424452 | 4.4:-84933770 | MS.gene47835:CDS |
| GCGTGGAGTTGAAGAGAGAG+TGG | 0.494775 | 4.4:+84934012 | None:intergenic |
| TCTTTCTTGGTAGCATCTGG+TGG | 0.499433 | 4.4:+84933032 | None:intergenic |
| AAAGGTGAGAAGAGGAAGCG+TGG | 0.518100 | 4.4:+84933995 | None:intergenic |
| ATTGGGATTGAGAGAAGGAA+AGG | 0.519722 | 4.4:+84933977 | None:intergenic |
| AGAGAAGGAAAGGTGAGAAG+AGG | 0.519757 | 4.4:+84933987 | None:intergenic |
| GGAAAACTGCTAAGGGGAAA+CGG | 0.521583 | 4.4:-84933749 | MS.gene47835:CDS |
| GATTGGTAAGTGAAGAGATT+GGG | 0.527445 | 4.4:+84933960 | None:intergenic |
| AAGAGATTGGGATTGAGAGA+AGG | 0.529493 | 4.4:+84933972 | None:intergenic |
| AAATCACCTAACTAGAAAAG+AGG | 0.532100 | 4.4:+84932964 | None:intergenic |
| AGGAACAAGAACAAGGGTAC+AGG | 0.550303 | 4.4:-84933074 | MS.gene47835:CDS |
| TGATTGGTAAGTGAAGAGAT+TGG | 0.551437 | 4.4:+84933959 | None:intergenic |
| AGGTGATAGGAAAACTGCTA+AGG | 0.552164 | 4.4:-84933757 | MS.gene47835:CDS |
| TCTGGTGGAGCATAAATCCT+TGG | 0.553001 | 4.4:+84933047 | None:intergenic |
| GGGACTGATGAAGTGATGAT+TGG | 0.562516 | 4.4:+84933943 | None:intergenic |
| AGTTGAAGAGAGAGTGGTGA+AGG | 0.566595 | 4.4:+84934018 | None:intergenic |
| GGTGATAGGAAAACTGCTAA+GGG | 0.567207 | 4.4:-84933756 | MS.gene47835:CDS |
| ACATTACATTTCCAAACGAA+TGG | 0.569487 | 4.4:+84933721 | None:intergenic |
| ACAAGGTTAAAGAGAGGGTG+GGG | 0.576219 | 4.4:+84933923 | None:intergenic |
| GGTGGAGCATAAATCCTTGG+TGG | 0.582114 | 4.4:+84933050 | None:intergenic |
| AATCACCTAACTAGAAAAGA+GGG | 0.586436 | 4.4:+84932965 | None:intergenic |
| AAGGCCAAGGAACAAGAACA+AGG | 0.590824 | 4.4:-84933081 | MS.gene47835:CDS |
| TATCCTCTCAGTTATGGCCA+TGG | 0.592654 | 4.4:-84934064 | None:intergenic |
| CGACAAGGTTAAAGAGAGGG+TGG | 0.596467 | 4.4:+84933921 | None:intergenic |
| GACAAGGTTAAAGAGAGGGT+GGG | 0.598803 | 4.4:+84933922 | None:intergenic |
| AATGTGATCAGGCAAGGCCA+AGG | 0.609619 | 4.4:-84933094 | MS.gene47835:intron |
| TAGAAGCAGTGATGATGCCA+TGG | 0.657767 | 4.4:+84934047 | None:intergenic |
| AAGCGACAAGGTTAAAGAGA+GGG | 0.666570 | 4.4:+84933918 | None:intergenic |
| AGGGGTTGGTGAAAGCGACA+AGG | 0.670121 | 4.4:+84933906 | None:intergenic |
| AAAGCGACAAGGTTAAAGAG+AGG | 0.678658 | 4.4:+84933917 | None:intergenic |
| AGGCCAAGGAACAAGAACAA+GGG | 0.711024 | 4.4:-84933080 | MS.gene47835:CDS |
| GTGATAGGAAAACTGCTAAG+GGG | 0.715035 | 4.4:-84933755 | MS.gene47835:CDS |
| ACAAGGGTACAGGACCACCA+AGG | 0.743357 | 4.4:-84933064 | MS.gene47835:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATCATTATTATTGTT+TGG | - | chr4.4:84933823-84933842 | MS.gene47835:intron | 10.0% |
| !!! | TTTTGCTAAATTATTATAAA+AGG | - | chr4.4:84933512-84933531 | MS.gene47835:intron | 10.0% |
| !! | AATAATTTAGCAAAACAAAA+AGG | + | chr4.4:84933507-84933526 | None:intergenic | 15.0% |
| !! | GAAATTCAAAATGTATAAAA+TGG | + | chr4.4:84933336-84933355 | None:intergenic | 15.0% |
| !! | AAAAATTCGAGATTATTTCA+TGG | - | chr4.4:84933789-84933808 | MS.gene47835:intron | 20.0% |
| !! | AACGAACCAAAATAAAAAAA+TGG | + | chr4.4:84933216-84933235 | None:intergenic | 20.0% |
| !! | ACGAACCAAAATAAAAAAAT+GGG | + | chr4.4:84933215-84933234 | None:intergenic | 20.0% |
| !! | TTCAAATTAACATTAGAACT+AGG | + | chr4.4:84933889-84933908 | None:intergenic | 20.0% |
| !!! | AACAAAAATTCCATTTTTCT+TGG | + | chr4.4:84933158-84933177 | None:intergenic | 20.0% |
| !!! | AATTTTTTCTCCAAGAAAAA+TGG | - | chr4.4:84933145-84933164 | MS.gene47835:intron | 20.0% |
| !!! | GATAACCCATTTTTTTATTT+TGG | - | chr4.4:84933207-84933226 | MS.gene47835:intron | 20.0% |
| !!! | TGGAATTTTTGTTATGAATT+TGG | - | chr4.4:84933165-84933184 | MS.gene47835:intron | 20.0% |
| ! | ATACACTAACAGTGTAAAAT+AGG | + | chr4.4:84933651-84933670 | None:intergenic | 25.0% |
| ! | CTACAAATTAGAAAACTACA+CGG | + | chr4.4:84933740-84933759 | None:intergenic | 25.0% |
| ! | GAATTTATTGAGTGTATGTT+TGG | - | chr4.4:84933365-84933384 | MS.gene47835:intron | 25.0% |
| !! | TGTTTTCTTTTAGTGTATTG+TGG | - | chr4.4:84933239-84933258 | MS.gene47835:intron | 25.0% |
| !! | TTGTCATTTAAAATGTGATC+AGG | - | chr4.4:84933917-84933936 | MS.gene47835:CDS | 25.0% |
| ACATTACATTTCCAAACGAA+TGG | + | chr4.4:84933304-84933323 | None:intergenic | 30.0% | |
| ATCCATTTAACTCATGTTTC+TGG | - | chr4.4:84933671-84933690 | MS.gene47835:intron | 30.0% | |
| TATTGAGTGTATGTTTGGTT+AGG | - | chr4.4:84933370-84933389 | MS.gene47835:intron | 30.0% | |
| TGGAGAAAAAATTACCAGAA+GGG | + | chr4.4:84933138-84933157 | None:intergenic | 30.0% | |
| TTCAAAAGTGGTGATAAAAC+AGG | - | chr4.4:84933593-84933612 | MS.gene47835:intron | 30.0% | |
| TTGGAGAAAAAATTACCAGA+AGG | + | chr4.4:84933139-84933158 | None:intergenic | 30.0% | |
| ! | ATTTAAAATGTGATCAGGCA+AGG | - | chr4.4:84933922-84933941 | MS.gene47835:CDS | 30.0% |
| ! | TTACATCTGCATAAAGCATT+TGG | - | chr4.4:84933561-84933580 | MS.gene47835:intron | 30.0% |
| !! | AATGTACGTTGATTCATGTT+TGG | - | chr4.4:84933447-84933466 | MS.gene47835:intron | 30.0% |
| !! | CGTGTAGTTTTCTAATTTGT+AGG | - | chr4.4:84933738-84933757 | MS.gene47835:CDS | 30.0% |
| !!! | GATTTTTTAGTCCATGAAGA+GGG | - | chr4.4:84933707-84933726 | MS.gene47835:intron | 30.0% |
| !!! | TGATTTTTTAGTCCATGAAG+AGG | - | chr4.4:84933706-84933725 | MS.gene47835:intron | 30.0% |
| !!! | TGGTGGTTATTTTTCAAAAG+TGG | - | chr4.4:84933581-84933600 | MS.gene47835:intron | 30.0% |
| AAAAAATTACCAGAAGGGGT+TGG | + | chr4.4:84933133-84933152 | None:intergenic | 35.0% | |
| ATCTTCAAGCTTCTCTTTCT+TGG | + | chr4.4:84934006-84934025 | None:intergenic | 35.0% | |
| GAAAGAGAAGCTTGAAGATA+AGG | - | chr4.4:84934007-84934026 | MS.gene47835:CDS | 35.0% | |
| GACCAGAAACATGAGTTAAA+TGG | + | chr4.4:84933676-84933695 | None:intergenic | 35.0% | |
| GATTGGTAAGTGAAGAGATT+GGG | + | chr4.4:84933065-84933084 | None:intergenic | 35.0% | |
| GGACTGAAAAGTAAATACTG+AGG | - | chr4.4:84933759-84933778 | MS.gene47835:CDS | 35.0% | |
| GGAGAAAAAATTACCAGAAG+GGG | + | chr4.4:84933137-84933156 | None:intergenic | 35.0% | |
| TGATTGGTAAGTGAAGAGAT+TGG | + | chr4.4:84933066-84933085 | None:intergenic | 35.0% | |
| AAAGCGACAAGGTTAAAGAG+AGG | + | chr4.4:84933108-84933127 | None:intergenic | 40.0% | |
| AAGAGATTGGGATTGAGAGA+AGG | + | chr4.4:84933053-84933072 | None:intergenic | 40.0% | |
| AAGCGACAAGGTTAAAGAGA+GGG | + | chr4.4:84933107-84933126 | None:intergenic | 40.0% | |
| AGGTGATAGGAAAACTGCTA+AGG | - | chr4.4:84933265-84933284 | MS.gene47835:intron | 40.0% | |
| ATTGGGATTGAGAGAAGGAA+AGG | + | chr4.4:84933048-84933067 | None:intergenic | 40.0% | |
| GGTGATAAAACAGGCTTACA+TGG | - | chr4.4:84933602-84933621 | MS.gene47835:intron | 40.0% | |
| GGTGATAGGAAAACTGCTAA+GGG | - | chr4.4:84933266-84933285 | MS.gene47835:intron | 40.0% | |
| GTGATAGGAAAACTGCTAAG+GGG | - | chr4.4:84933267-84933286 | MS.gene47835:intron | 40.0% | |
| ! | CATCTGCATAAAGCATTTGG+TGG | - | chr4.4:84933564-84933583 | MS.gene47835:intron | 40.0% |
| ! | CTTTTAGTGTATTGTGGCAG+AGG | - | chr4.4:84933245-84933264 | MS.gene47835:intron | 40.0% |
| ! | TTCTCTTTCTTGGTAGCATC+TGG | + | chr4.4:84933996-84934015 | None:intergenic | 40.0% |
| AAACGGTTCAGCCATTCGTT+TGG | - | chr4.4:84933290-84933309 | MS.gene47835:intron | 45.0% | |
| AAGGCCAAGGAACAAGAACA+AGG | - | chr4.4:84933941-84933960 | MS.gene47835:CDS | 45.0% | |
| ACAAGGTTAAAGAGAGGGTG+GGG | + | chr4.4:84933102-84933121 | None:intergenic | 45.0% | |
| ACGGTTTAAGTCCCTCTTCA+TGG | + | chr4.4:84933721-84933740 | None:intergenic | 45.0% | |
| AGAGAAGGAAAGGTGAGAAG+AGG | + | chr4.4:84933038-84933057 | None:intergenic | 45.0% | |
| AGGCCAAGGAACAAGAACAA+GGG | - | chr4.4:84933942-84933961 | MS.gene47835:CDS | 45.0% | |
| AGTTGAAGAGAGAGTGGTGA+AGG | + | chr4.4:84933007-84933026 | None:intergenic | 45.0% | |
| GACAAGGTTAAAGAGAGGGT+GGG | + | chr4.4:84933103-84933122 | None:intergenic | 45.0% | |
| GGAAAACTGCTAAGGGGAAA+CGG | - | chr4.4:84933273-84933292 | MS.gene47835:intron | 45.0% | |
| GGGACTGATGAAGTGATGAT+TGG | + | chr4.4:84933082-84933101 | None:intergenic | 45.0% | |
| GTACCCTTGTTCTTGTTCCT+TGG | + | chr4.4:84933948-84933967 | None:intergenic | 45.0% | |
| TCTGGTGGAGCATAAATCCT+TGG | + | chr4.4:84933978-84933997 | None:intergenic | 45.0% | |
| TGTATTGTGGCAGAGGTGAT+AGG | - | chr4.4:84933252-84933271 | MS.gene47835:intron | 45.0% | |
| ! | AGGAACAAGAACAAGGGTAC+AGG | - | chr4.4:84933948-84933967 | MS.gene47835:CDS | 45.0% |
| ! | TAGAAGCAGTGATGATGCCA+TGG | + | chr4.4:84932978-84932997 | None:intergenic | 45.0% |
| ! | TCTTTCTTGGTAGCATCTGG+TGG | + | chr4.4:84933993-84934012 | None:intergenic | 45.0% |
| AAAGGTGAGAAGAGGAAGCG+TGG | + | chr4.4:84933030-84933049 | None:intergenic | 50.0% | |
| AATGTGATCAGGCAAGGCCA+AGG | - | chr4.4:84933928-84933947 | MS.gene47835:CDS | 50.0% | |
| CGACAAGGTTAAAGAGAGGG+TGG | + | chr4.4:84933104-84933123 | None:intergenic | 50.0% | |
| GGTGGAGCATAAATCCTTGG+TGG | + | chr4.4:84933975-84933994 | None:intergenic | 50.0% | |
| GCGTGGAGTTGAAGAGAGAG+TGG | + | chr4.4:84933013-84933032 | None:intergenic | 55.0% | |
| TCGCTTTCACCAACCCCTTC+TGG | - | chr4.4:84933121-84933140 | MS.gene47835:intron | 55.0% | |
| ! | ACAAGGGTACAGGACCACCA+AGG | - | chr4.4:84933958-84933977 | MS.gene47835:CDS | 55.0% |
| !! | AGGGGTTGGTGAAAGCGACA+AGG | + | chr4.4:84933119-84933138 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 84932971 | 84934073 | 84932971 | ID=MS.gene47835 |
| chr4.4 | mRNA | 84932971 | 84934073 | 84932971 | ID=MS.gene47835.t1;Parent=MS.gene47835 |
| chr4.4 | exon | 84933902 | 84934073 | 84933902 | ID=MS.gene47835.t1.exon1;Parent=MS.gene47835.t1 |
| chr4.4 | CDS | 84933902 | 84934073 | 84933902 | ID=cds.MS.gene47835.t1;Parent=MS.gene47835.t1 |
| chr4.4 | exon | 84933728 | 84933792 | 84933728 | ID=MS.gene47835.t1.exon2;Parent=MS.gene47835.t1 |
| chr4.4 | CDS | 84933728 | 84933792 | 84933728 | ID=cds.MS.gene47835.t1;Parent=MS.gene47835.t1 |
| chr4.4 | exon | 84932971 | 84933105 | 84932971 | ID=MS.gene47835.t1.exon3;Parent=MS.gene47835.t1 |
| chr4.4 | CDS | 84932971 | 84933105 | 84932971 | ID=cds.MS.gene47835.t1;Parent=MS.gene47835.t1 |
| Gene Sequence |
| Protein sequence |
