Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64294.t1 | XP_013467179.1 | 91.5 | 365 | 18 | 1 | 1 | 352 | 1 | 365 | 2.80E-171 | 611.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64294.t1 | Q9T0H9 | 70.7 | 335 | 98 | 0 | 18 | 352 | 25 | 359 | 2.6e-117 | 423.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64294.t1 | A0A072VSW1 | 91.5 | 365 | 18 | 1 | 1 | 352 | 1 | 365 | 2.0e-171 | 611.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene64294 | 0.822292 | 2.56E-53 | -1.69E-46 |
| MS.gene049284 | MS.gene64294 | 0.821731 | 3.46E-53 | -1.69E-46 |
| MS.gene049351 | MS.gene64294 | 0.83374 | 4.48E-56 | -1.69E-46 |
| MS.gene049356 | MS.gene64294 | 0.816839 | 4.50E-52 | -1.69E-46 |
| MS.gene049369 | MS.gene64294 | 0.81932 | 1.24E-52 | -1.69E-46 |
| MS.gene049427 | MS.gene64294 | 0.896775 | 2.67E-76 | -1.69E-46 |
| MS.gene049491 | MS.gene64294 | 0.827576 | 1.45E-54 | -1.69E-46 |
| MS.gene049609 | MS.gene64294 | 0.80362 | 3.20E-49 | -1.69E-46 |
| MS.gene049661 | MS.gene64294 | 0.814037 | 1.89E-51 | -1.69E-46 |
| MS.gene049662 | MS.gene64294 | 0.814211 | 1.73E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene64294 | 0.83975 | 1.31E-57 | -1.69E-46 |
| MS.gene050076 | MS.gene64294 | 0.813705 | 2.24E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene64294 | 0.853176 | 2.84E-61 | -1.69E-46 |
| MS.gene050397 | MS.gene64294 | 0.834954 | 2.22E-56 | -1.69E-46 |
| MS.gene050432 | MS.gene64294 | 0.825408 | 4.76E-54 | -1.69E-46 |
| MS.gene050464 | MS.gene64294 | 0.820456 | 6.79E-53 | -1.69E-46 |
| MS.gene050529 | MS.gene64294 | 0.844684 | 6.49E-59 | -1.69E-46 |
| MS.gene050593 | MS.gene64294 | 0.835502 | 1.62E-56 | -1.69E-46 |
| MS.gene050670 | MS.gene64294 | 0.857751 | 1.32E-62 | -1.69E-46 |
| MS.gene050747 | MS.gene64294 | 0.814058 | 1.87E-51 | -1.69E-46 |
| MS.gene050767 | MS.gene64294 | 0.810433 | 1.16E-50 | -1.69E-46 |
| MS.gene050770 | MS.gene64294 | 0.813769 | 2.16E-51 | -1.69E-46 |
| MS.gene050772 | MS.gene64294 | 0.817351 | 3.45E-52 | -1.69E-46 |
| MS.gene050812 | MS.gene64294 | 0.862177 | 6.10E-64 | -1.69E-46 |
| MS.gene050950 | MS.gene64294 | 0.820973 | 5.17E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene64294 | 0.847235 | 1.31E-59 | -1.69E-46 |
| MS.gene05105 | MS.gene64294 | 0.84964 | 2.84E-60 | -1.69E-46 |
| MS.gene051387 | MS.gene64294 | 0.861282 | 1.14E-63 | -1.69E-46 |
| MS.gene051471 | MS.gene64294 | 0.835921 | 1.27E-56 | -1.69E-46 |
| MS.gene051525 | MS.gene64294 | 0.804858 | 1.77E-49 | -1.69E-46 |
| MS.gene051582 | MS.gene64294 | 0.822482 | 2.31E-53 | -1.69E-46 |
| MS.gene051605 | MS.gene64294 | 0.80886 | 2.52E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene64294 | 0.833465 | 5.25E-56 | -1.69E-46 |
| MS.gene052078 | MS.gene64294 | 0.838709 | 2.45E-57 | -1.69E-46 |
| MS.gene052188 | MS.gene64294 | 0.877137 | 8.00E-69 | -1.69E-46 |
| MS.gene052253 | MS.gene64294 | 0.825781 | 3.89E-54 | -1.69E-46 |
| MS.gene052310 | MS.gene64294 | 0.902772 | 6.88E-79 | -1.69E-46 |
| MS.gene052322 | MS.gene64294 | 0.831333 | 1.77E-55 | -1.69E-46 |
| MS.gene052326 | MS.gene64294 | 0.81229 | 4.57E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene64294 | 0.85609 | 4.07E-62 | -1.69E-46 |
| MS.gene052379 | MS.gene64294 | 0.81065 | 1.04E-50 | -1.69E-46 |
| MS.gene052421 | MS.gene64294 | 0.827109 | 1.88E-54 | -1.69E-46 |
| MS.gene052481 | MS.gene64294 | 0.827622 | 1.41E-54 | -1.69E-46 |
| MS.gene052484 | MS.gene64294 | 0.819837 | 9.42E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene64294 | 0.848974 | 4.35E-60 | -1.69E-46 |
| MS.gene052615 | MS.gene64294 | 0.811088 | 8.34E-51 | -1.69E-46 |
| MS.gene052870 | MS.gene64294 | 0.803914 | 2.78E-49 | -1.69E-46 |
| MS.gene053009 | MS.gene64294 | 0.807361 | 5.25E-50 | -1.69E-46 |
| MS.gene053103 | MS.gene64294 | 0.824512 | 7.75E-54 | -1.69E-46 |
| MS.gene053104 | MS.gene64294 | 0.819145 | 1.35E-52 | -1.69E-46 |
| MS.gene053107 | MS.gene64294 | 0.835926 | 1.26E-56 | -1.69E-46 |
| MS.gene053209 | MS.gene64294 | 0.809276 | 2.05E-50 | -1.69E-46 |
| MS.gene053322 | MS.gene64294 | 0.834841 | 2.37E-56 | -1.69E-46 |
| MS.gene053557 | MS.gene64294 | 0.84595 | 2.95E-59 | -1.69E-46 |
| MS.gene053579 | MS.gene64294 | 0.81589 | 7.33E-52 | -1.69E-46 |
| MS.gene053758 | MS.gene64294 | 0.848293 | 6.72E-60 | -1.69E-46 |
| MS.gene053813 | MS.gene64294 | 0.800978 | 1.12E-48 | -1.69E-46 |
| MS.gene053836 | MS.gene64294 | 0.806322 | 8.70E-50 | -1.69E-46 |
| MS.gene053912 | MS.gene64294 | 0.814659 | 1.38E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene64294 | 0.844403 | 7.73E-59 | -1.69E-46 |
| MS.gene054376 | MS.gene64294 | 0.818342 | 2.06E-52 | -1.69E-46 |
| MS.gene05455 | MS.gene64294 | 0.809369 | 1.96E-50 | -1.69E-46 |
| MS.gene054802 | MS.gene64294 | 0.823703 | 1.20E-53 | -1.69E-46 |
| MS.gene054803 | MS.gene64294 | 0.819872 | 9.24E-53 | -1.69E-46 |
| MS.gene054804 | MS.gene64294 | 0.821206 | 4.57E-53 | -1.69E-46 |
| MS.gene054955 | MS.gene64294 | 0.819827 | 9.46E-53 | -1.69E-46 |
| MS.gene05505 | MS.gene64294 | 0.820541 | 6.50E-53 | -1.69E-46 |
| MS.gene055116 | MS.gene64294 | 0.8443 | 8.23E-59 | -1.69E-46 |
| MS.gene055206 | MS.gene64294 | 0.822729 | 2.03E-53 | -1.69E-46 |
| MS.gene055277 | MS.gene64294 | 0.854859 | 9.30E-62 | -1.69E-46 |
| MS.gene055390 | MS.gene64294 | 0.826063 | 3.33E-54 | -1.69E-46 |
| MS.gene055397 | MS.gene64294 | 0.830843 | 2.34E-55 | -1.69E-46 |
| MS.gene055412 | MS.gene64294 | 0.839131 | 1.90E-57 | -1.69E-46 |
| MS.gene055422 | MS.gene64294 | 0.841671 | 4.12E-58 | -1.69E-46 |
| MS.gene055428 | MS.gene64294 | 0.814655 | 1.38E-51 | -1.69E-46 |
| MS.gene055499 | MS.gene64294 | 0.800162 | 1.64E-48 | -1.69E-46 |
| MS.gene05553 | MS.gene64294 | 0.817498 | 3.20E-52 | -1.69E-46 |
| MS.gene055605 | MS.gene64294 | 0.815175 | 1.06E-51 | -1.69E-46 |
| MS.gene055647 | MS.gene64294 | 0.816821 | 4.54E-52 | -1.69E-46 |
| MS.gene055896 | MS.gene64294 | 0.827559 | 1.46E-54 | -1.69E-46 |
| MS.gene05592 | MS.gene64294 | 0.815723 | 7.99E-52 | -1.69E-46 |
| MS.gene056191 | MS.gene64294 | 0.808249 | 3.40E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene64294 | 0.846053 | 2.77E-59 | -1.69E-46 |
| MS.gene056410 | MS.gene64294 | 0.824306 | 8.67E-54 | -1.69E-46 |
| MS.gene056511 | MS.gene64294 | 0.848504 | 5.88E-60 | -1.69E-46 |
| MS.gene056609 | MS.gene64294 | 0.846979 | 1.54E-59 | -1.69E-46 |
| MS.gene056612 | MS.gene64294 | 0.826642 | 2.43E-54 | -1.69E-46 |
| MS.gene056659 | MS.gene64294 | 0.826428 | 2.73E-54 | -1.69E-46 |
| MS.gene056796 | MS.gene64294 | 0.832293 | 1.03E-55 | -1.69E-46 |
| MS.gene056897 | MS.gene64294 | 0.826698 | 2.35E-54 | -1.69E-46 |
| MS.gene057011 | MS.gene64294 | 0.865666 | 5.01E-65 | -1.69E-46 |
| MS.gene05702 | MS.gene64294 | 0.82633 | 2.88E-54 | -1.69E-46 |
| MS.gene057123 | MS.gene64294 | 0.815772 | 7.79E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene64294 | 0.829094 | 6.24E-55 | -1.69E-46 |
| MS.gene057129 | MS.gene64294 | 0.813958 | 1.97E-51 | -1.69E-46 |
| MS.gene057146 | MS.gene64294 | 0.861512 | 9.74E-64 | -1.69E-46 |
| MS.gene057331 | MS.gene64294 | 0.819649 | 1.04E-52 | -1.69E-46 |
| MS.gene05735 | MS.gene64294 | 0.802796 | 4.73E-49 | -1.69E-46 |
| MS.gene057396 | MS.gene64294 | 0.813478 | 2.51E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene64294 | 0.827377 | 1.62E-54 | -1.69E-46 |
| MS.gene057448 | MS.gene64294 | 0.837124 | 6.25E-57 | -1.69E-46 |
| MS.gene057449 | MS.gene64294 | 0.838837 | 2.27E-57 | -1.69E-46 |
| MS.gene057450 | MS.gene64294 | 0.837254 | 5.80E-57 | -1.69E-46 |
| MS.gene057478 | MS.gene64294 | -0.801035 | 1.09E-48 | -1.69E-46 |
| MS.gene057749 | MS.gene64294 | 0.816578 | 5.15E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene64294 | 0.814392 | 1.58E-51 | -1.69E-46 |
| MS.gene057927 | MS.gene64294 | 0.807032 | 6.16E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene64294 | 0.847733 | 9.59E-60 | -1.69E-46 |
| MS.gene058007 | MS.gene64294 | 0.830252 | 3.26E-55 | -1.69E-46 |
| MS.gene058019 | MS.gene64294 | 0.819831 | 9.45E-53 | -1.69E-46 |
| MS.gene058082 | MS.gene64294 | 0.808123 | 3.61E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene64294 | 0.848665 | 5.30E-60 | -1.69E-46 |
| MS.gene058142 | MS.gene64294 | 0.810065 | 1.39E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene64294 | 0.819649 | 1.04E-52 | -1.69E-46 |
| MS.gene058276 | MS.gene64294 | 0.813618 | 2.34E-51 | -1.69E-46 |
| MS.gene058293 | MS.gene64294 | 0.828202 | 1.03E-54 | -1.69E-46 |
| MS.gene058365 | MS.gene64294 | 0.812103 | 5.02E-51 | -1.69E-46 |
| MS.gene05842 | MS.gene64294 | 0.805039 | 1.62E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene64294 | 0.884418 | 1.95E-71 | -1.69E-46 |
| MS.gene058700 | MS.gene64294 | 0.82054 | 6.50E-53 | -1.69E-46 |
| MS.gene05883 | MS.gene64294 | 0.823913 | 1.07E-53 | -1.69E-46 |
| MS.gene05886 | MS.gene64294 | 0.802828 | 4.66E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene64294 | 0.863516 | 2.35E-64 | -1.69E-46 |
| MS.gene05907 | MS.gene64294 | 0.862825 | 3.85E-64 | -1.69E-46 |
| MS.gene059141 | MS.gene64294 | 0.838413 | 2.92E-57 | -1.69E-46 |
| MS.gene059326 | MS.gene64294 | 0.809572 | 1.77E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene64294 | 0.821883 | 3.19E-53 | -1.69E-46 |
| MS.gene059366 | MS.gene64294 | 0.817124 | 3.88E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene64294 | 0.811353 | 7.30E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene64294 | 0.802925 | 4.45E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene64294 | 0.866263 | 3.24E-65 | -1.69E-46 |
| MS.gene059597 | MS.gene64294 | 0.846627 | 1.93E-59 | -1.69E-46 |
| MS.gene05959 | MS.gene64294 | 0.85724 | 1.87E-62 | -1.69E-46 |
| MS.gene059676 | MS.gene64294 | 0.885583 | 7.17E-72 | -1.69E-46 |
| MS.gene059688 | MS.gene64294 | 0.867889 | 9.81E-66 | -1.69E-46 |
| MS.gene059692 | MS.gene64294 | 0.850721 | 1.41E-60 | -1.69E-46 |
| MS.gene059695 | MS.gene64294 | 0.853345 | 2.54E-61 | -1.69E-46 |
| MS.gene059708 | MS.gene64294 | 0.830623 | 2.65E-55 | -1.69E-46 |
| MS.gene059711 | MS.gene64294 | 0.807145 | 5.83E-50 | -1.69E-46 |
| MS.gene059807 | MS.gene64294 | 0.814395 | 1.57E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene64294 | 0.829211 | 5.84E-55 | -1.69E-46 |
| MS.gene05986 | MS.gene64294 | 0.81816 | 2.27E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene64294 | 0.844631 | 6.71E-59 | -1.69E-46 |
| MS.gene059960 | MS.gene64294 | 0.88813 | 7.76E-73 | -1.69E-46 |
| MS.gene060403 | MS.gene64294 | 0.83888 | 2.21E-57 | -1.69E-46 |
| MS.gene060407 | MS.gene64294 | 0.839861 | 1.23E-57 | -1.69E-46 |
| MS.gene060804 | MS.gene64294 | 0.844916 | 5.62E-59 | -1.69E-46 |
| MS.gene060818 | MS.gene64294 | 0.881136 | 3.08E-70 | -1.69E-46 |
| MS.gene060837 | MS.gene64294 | 0.825991 | 3.47E-54 | -1.69E-46 |
| MS.gene06090 | MS.gene64294 | 0.830333 | 3.12E-55 | -1.69E-46 |
| MS.gene061041 | MS.gene64294 | 0.84108 | 5.90E-58 | -1.69E-46 |
| MS.gene061049 | MS.gene64294 | 0.824311 | 8.65E-54 | -1.69E-46 |
| MS.gene061051 | MS.gene64294 | -0.858949 | 5.80E-63 | -1.69E-46 |
| MS.gene061154 | MS.gene64294 | 0.833801 | 4.33E-56 | -1.69E-46 |
| MS.gene061159 | MS.gene64294 | 0.833662 | 4.69E-56 | -1.69E-46 |
| MS.gene061200 | MS.gene64294 | 0.853681 | 2.03E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64294.t1 | MTR_1g046730 | 94.521 | 365 | 7 | 1 | 1 | 352 | 1 | 365 | 0.0 | 682 |
| MS.gene64294.t1 | MTR_5g009810 | 45.291 | 223 | 106 | 4 | 136 | 351 | 136 | 349 | 8.23e-48 | 165 |
| MS.gene64294.t1 | MTR_7g079850 | 40.758 | 211 | 118 | 2 | 139 | 349 | 76 | 279 | 8.59e-41 | 145 |
| MS.gene64294.t1 | MTR_1g111390 | 39.556 | 225 | 114 | 5 | 138 | 348 | 7 | 223 | 3.22e-38 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64294.t1 | AT4G13590 | 70.746 | 335 | 98 | 0 | 18 | 352 | 25 | 359 | 2.53e-157 | 446 |
| MS.gene64294.t1 | AT4G13590 | 70.149 | 335 | 100 | 0 | 18 | 352 | 25 | 359 | 4.35e-156 | 442 |
| MS.gene64294.t1 | AT1G64150 | 48.624 | 218 | 95 | 5 | 137 | 347 | 157 | 364 | 2.60e-46 | 162 |
| MS.gene64294.t1 | AT5G36290 | 42.222 | 225 | 115 | 5 | 131 | 349 | 74 | 289 | 4.60e-39 | 140 |
| MS.gene64294.t1 | AT5G36290 | 42.222 | 225 | 115 | 5 | 131 | 349 | 74 | 289 | 4.60e-39 | 140 |
| MS.gene64294.t1 | AT1G25520 | 38.393 | 224 | 119 | 3 | 138 | 348 | 7 | 224 | 2.31e-35 | 129 |
| MS.gene64294.t1 | AT1G68650 | 39.035 | 228 | 108 | 5 | 138 | 347 | 7 | 221 | 4.37e-34 | 125 |
Find 71 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCATCAGGTTGGTTATT+TGG | 0.099863 | 1.3:+28362359 | MS.gene64294:intron |
| TTAATATTTGTTTCTGAAAT+TGG | 0.151448 | 1.3:+28355527 | MS.gene64294:CDS |
| CAAATCCTCTTGAGATTCTT+TGG | 0.174329 | 1.3:+28361441 | MS.gene64294:CDS |
| AGTAAGATGCAGACAGAAAT+TGG | 0.222922 | 1.3:+28354606 | MS.gene64294:intron |
| TTTCATCAGGTTGGTTATTT+GGG | 0.251861 | 1.3:+28362360 | MS.gene64294:intron |
| AATTTCTTTCAGAGACATTC+TGG | 0.273491 | 1.3:-28354720 | None:intergenic |
| TCAATCCTATCTGTTGTAAT+TGG | 0.287895 | 1.3:+28359756 | MS.gene64294:CDS |
| TTATTCTTTACAGTCTCCTT+GGG | 0.295993 | 1.3:+28362175 | MS.gene64294:intron |
| AAAAGAAACATGAAAGGTTT+AGG | 0.305294 | 1.3:+28354018 | None:intergenic |
| CCTATTCGAACTTACTTGTT+TGG | 0.322104 | 1.3:-28359809 | None:intergenic |
| CTTGCAGCAATTGCAAAATC+AGG | 0.333816 | 1.3:+28355485 | MS.gene64294:CDS |
| CTTATTCTTTACAGTCTCCT+TGG | 0.338454 | 1.3:+28362174 | MS.gene64294:intron |
| AATCGCGCTCGCAGCTGCTC+AGG | 0.359687 | 1.3:+28361827 | MS.gene64294:CDS |
| CTGCATATTCTCCGATTGGC+AGG | 0.397092 | 1.3:-28360942 | None:intergenic |
| ATTCTTTATTGCTGCACTCT+TGG | 0.409806 | 1.3:+28358635 | MS.gene64294:CDS |
| GTAAGATGCAGACAGAAATT+GGG | 0.414311 | 1.3:+28354607 | MS.gene64294:intron |
| GCAACATGCATTGCTATTGT+TGG | 0.419667 | 1.3:+28362233 | MS.gene64294:CDS |
| CAGGTTGGTTATTTGGGTGG+AGG | 0.435131 | 1.3:+28362366 | MS.gene64294:intron |
| GTTAGGATCAATGGGTGCTC+TGG | 0.445738 | 1.3:+28359725 | MS.gene64294:CDS |
| ATCAAATGTTAGCGTTGGAC+CGG | 0.451541 | 1.3:+28354666 | MS.gene64294:CDS |
| TTTACAGTCTCCTTGGGGTG+TGG | 0.461676 | 1.3:+28362181 | MS.gene64294:intron |
| GTGGCAAGTGGAGCTATTGC+TGG | 0.467080 | 1.3:+28362200 | MS.gene64294:CDS |
| AGAGGAGCTTGTGAAAGAAA+AGG | 0.481283 | 1.3:+28361083 | MS.gene64294:CDS |
| AGGTTGGTTATTTGGGTGGA+GGG | 0.484602 | 1.3:+28362367 | MS.gene64294:intron |
| TTCAATATTGCAAATGAAAG+AGG | 0.489232 | 1.3:-28354075 | None:intergenic |
| ACAGAAATTGGGGTTGAGCT+TGG | 0.489408 | 1.3:+28354618 | MS.gene64294:CDS |
| CATCAGGTTGGTTATTTGGG+TGG | 0.492256 | 1.3:+28362363 | MS.gene64294:intron |
| TTACTTGTTTGGAACTGAGC+AGG | 0.496197 | 1.3:-28359798 | None:intergenic |
| TCTCCTTGGGGTGTGGCAAG+TGG | 0.497420 | 1.3:+28362188 | MS.gene64294:CDS |
| CATACACCCTTGATTCCAAA+GGG | 0.511728 | 1.3:+28354045 | MS.gene64294:CDS |
| CTACCTACAGCCCTGCCAAT+CGG | 0.512958 | 1.3:+28360931 | MS.gene64294:intron |
| AAACTTACATGGAGATAAAG+TGG | 0.528431 | 1.3:-28354133 | None:intergenic |
| TCAAATGTTAGCGTTGGACC+GGG | 0.528619 | 1.3:+28354667 | MS.gene64294:CDS |
| AAAGCTATAGAGACAGGATA+AGG | 0.529515 | 1.3:-28355395 | None:intergenic |
| TAAAATCAATAAAAGACGCA+TGG | 0.530108 | 1.3:+28360992 | MS.gene64294:CDS |
| ACATGCATTGCTATTGTTGG+AGG | 0.530842 | 1.3:+28362236 | MS.gene64294:CDS |
| TTTCTGAAATGTAGTTAGCA+AGG | 0.537790 | 1.3:-28362265 | None:intergenic |
| CGCATGGGATCTTCCTTCAA+AGG | 0.539180 | 1.3:+28361008 | MS.gene64294:CDS |
| AACACAAAAGCTATAGAGAC+AGG | 0.541473 | 1.3:-28355401 | None:intergenic |
| CAAGCATCAAATGTTAGCGT+TGG | 0.550774 | 1.3:+28354661 | MS.gene64294:CDS |
| CTTGGCAATGCAATATGAGA+AGG | 0.551638 | 1.3:+28358653 | MS.gene64294:CDS |
| TCACTAATAGCGTTTGTGAA+AGG | 0.557958 | 1.3:+28355446 | MS.gene64294:CDS |
| ACTGCTGCATATTCTCCGAT+TGG | 0.561503 | 1.3:-28360946 | None:intergenic |
| CTTGAGCTCGAATTGTTCCA+CGG | 0.561525 | 1.3:-28354642 | None:intergenic |
| TGCATATTCTCCGATTGGCA+GGG | 0.562749 | 1.3:-28360941 | None:intergenic |
| AAAATCAATAAAAGACGCAT+GGG | 0.563865 | 1.3:+28360993 | MS.gene64294:CDS |
| AATATTGCAAATGAAAGAGG+AGG | 0.573313 | 1.3:-28354072 | None:intergenic |
| TGTTTCTGAAATTGGTGACA+AGG | 0.576306 | 1.3:+28355535 | MS.gene64294:CDS |
| AAATGTTAGCGTTGGACCGG+GGG | 0.578907 | 1.3:+28354669 | MS.gene64294:CDS |
| TTATTGCTTCCATAATCCCC+CGG | 0.585329 | 1.3:-28354685 | None:intergenic |
| TTGAGCTCGAATTGTTCCAC+GGG | 0.585735 | 1.3:-28354641 | None:intergenic |
| CAGGCACTGATTGAAAGATA+CGG | 0.586259 | 1.3:-28359779 | None:intergenic |
| GCTCCACTTGCCACACCCCA+AGG | 0.586539 | 1.3:-28362191 | None:intergenic |
| TCATACACCCTTGATTCCAA+AGG | 0.588292 | 1.3:+28354044 | MS.gene64294:CDS |
| CGATTGTTGCAAGCATTGAA+CGG | 0.592003 | 1.3:-28361809 | None:intergenic |
| AATGCAATATGAGAAGGGAT+TGG | 0.594404 | 1.3:+28358659 | MS.gene64294:CDS |
| GAGACAGGATAAGGAATCTG+AGG | 0.595160 | 1.3:-28355386 | None:intergenic |
| CTAATAGCGTTTGTGAAAGG+AGG | 0.597957 | 1.3:+28355449 | MS.gene64294:CDS |
| TATTCTTTACAGTCTCCTTG+GGG | 0.604508 | 1.3:+28362176 | MS.gene64294:intron |
| TTGGGGTTGAGCTTGGCCCG+TGG | 0.609579 | 1.3:+28354625 | MS.gene64294:CDS |
| TACGGCCAATTACAACAGAT+AGG | 0.609783 | 1.3:-28359761 | None:intergenic |
| TAAGATGCAGACAGAAATTG+GGG | 0.617935 | 1.3:+28354608 | MS.gene64294:CDS |
| CAAATGTTAGCGTTGGACCG+GGG | 0.618540 | 1.3:+28354668 | MS.gene64294:CDS |
| GATTTCCAAAGAATCTCAAG+AGG | 0.623224 | 1.3:-28361446 | None:intergenic |
| GTAGAGAAATAAGTACAAGA+TGG | 0.624500 | 1.3:-28354105 | None:intergenic |
| TTGGCAATGCAATATGAGAA+GGG | 0.625006 | 1.3:+28358654 | MS.gene64294:CDS |
| GACTGATTTGCCTAGGAATG+GGG | 0.632644 | 1.3:+28361783 | MS.gene64294:intron |
| ATTGCTGCAAGAACTGATGA+AGG | 0.633169 | 1.3:-28355473 | None:intergenic |
| TGATGAACTAGCTGAAGCAG+AGG | 0.638039 | 1.3:+28361065 | MS.gene64294:CDS |
| ACAGGATAAGGAATCTGAGG+AGG | 0.640171 | 1.3:-28355383 | None:intergenic |
| AATATCTTCAGGCATCGCAA+CGG | 0.661954 | 1.3:+28361414 | MS.gene64294:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 28354027 | 28362434 | 28354027 | ID=MS.gene64294 |
| chr1.3 | mRNA | 28354027 | 28362434 | 28354027 | ID=MS.gene64294.t1;Parent=MS.gene64294 |
| chr1.3 | exon | 28354027 | 28354147 | 28354027 | ID=MS.gene64294.t1.exon1;Parent=MS.gene64294.t1 |
| chr1.3 | CDS | 28354027 | 28354147 | 28354027 | ID=cds.MS.gene64294.t1;Parent=MS.gene64294.t1 |
| chr1.3 | exon | 28354608 | 28354767 | 28354608 | ID=MS.gene64294.t1.exon2;Parent=MS.gene64294.t1 |
| chr1.3 | CDS | 28354608 | 28354767 | 28354608 | ID=cds.MS.gene64294.t1;Parent=MS.gene64294.t1 |
| chr1.3 | exon | 28355376 | 28355556 | 28355376 | ID=MS.gene64294.t1.exon3;Parent=MS.gene64294.t1 |
| chr1.3 | CDS | 28355376 | 28355556 | 28355376 | ID=cds.MS.gene64294.t1;Parent=MS.gene64294.t1 |
| chr1.3 | exon | 28358633 | 28358680 | 28358633 | ID=MS.gene64294.t1.exon4;Parent=MS.gene64294.t1 |
| chr1.3 | CDS | 28358633 | 28358680 | 28358633 | ID=cds.MS.gene64294.t1;Parent=MS.gene64294.t1 |
| chr1.3 | exon | 28359720 | 28359816 | 28359720 | ID=MS.gene64294.t1.exon5;Parent=MS.gene64294.t1 |
| chr1.3 | CDS | 28359720 | 28359816 | 28359720 | ID=cds.MS.gene64294.t1;Parent=MS.gene64294.t1 |
| chr1.3 | exon | 28360941 | 28361104 | 28360941 | ID=MS.gene64294.t1.exon6;Parent=MS.gene64294.t1 |
| chr1.3 | CDS | 28360941 | 28361104 | 28360941 | ID=cds.MS.gene64294.t1;Parent=MS.gene64294.t1 |
| chr1.3 | exon | 28361425 | 28361490 | 28361425 | ID=MS.gene64294.t1.exon7;Parent=MS.gene64294.t1 |
| chr1.3 | CDS | 28361425 | 28361490 | 28361425 | ID=cds.MS.gene64294.t1;Parent=MS.gene64294.t1 |
| chr1.3 | exon | 28361798 | 28361848 | 28361798 | ID=MS.gene64294.t1.exon8;Parent=MS.gene64294.t1 |
| chr1.3 | CDS | 28361798 | 28361848 | 28361798 | ID=cds.MS.gene64294.t1;Parent=MS.gene64294.t1 |
| chr1.3 | exon | 28362188 | 28362292 | 28362188 | ID=MS.gene64294.t1.exon9;Parent=MS.gene64294.t1 |
| chr1.3 | CDS | 28362188 | 28362292 | 28362188 | ID=cds.MS.gene64294.t1;Parent=MS.gene64294.t1 |
| chr1.3 | exon | 28362369 | 28362434 | 28362369 | ID=MS.gene64294.t1.exon10;Parent=MS.gene64294.t1 |
| chr1.3 | CDS | 28362369 | 28362434 | 28362369 | ID=cds.MS.gene64294.t1;Parent=MS.gene64294.t1 |
| Gene Sequence |
| Protein sequence |
