Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71136.t1 | XP_003595751.1 | 96.4 | 548 | 19 | 1 | 1 | 548 | 1 | 547 | 5.50E-307 | 1062.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71136.t1 | Q6YPG5 | 65.9 | 554 | 169 | 4 | 3 | 548 | 6 | 547 | 7.5e-204 | 711.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71136.t1 | G7IGS4 | 96.4 | 548 | 19 | 1 | 1 | 548 | 1 | 547 | 4.0e-307 | 1062.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049137 | MS.gene71136 | 0.810692 | 1.02E-50 | -1.69E-46 |
MS.gene049351 | MS.gene71136 | 0.858956 | 5.77E-63 | -1.69E-46 |
MS.gene049356 | MS.gene71136 | 0.801953 | 7.06E-49 | -1.69E-46 |
MS.gene049369 | MS.gene71136 | 0.805517 | 1.28E-49 | -1.69E-46 |
MS.gene049389 | MS.gene71136 | 0.810961 | 8.88E-51 | -1.69E-46 |
MS.gene049427 | MS.gene71136 | 0.896372 | 3.93E-76 | -1.69E-46 |
MS.gene049491 | MS.gene71136 | 0.873101 | 1.91E-67 | -1.69E-46 |
MS.gene049614 | MS.gene71136 | 0.83009 | 3.57E-55 | -1.69E-46 |
MS.gene049661 | MS.gene71136 | 0.816419 | 5.58E-52 | -1.69E-46 |
MS.gene049662 | MS.gene71136 | 0.80679 | 6.93E-50 | -1.69E-46 |
MS.gene049758 | MS.gene71136 | 0.815239 | 1.02E-51 | -1.69E-46 |
MS.gene049760 | MS.gene71136 | 0.811639 | 6.33E-51 | -1.69E-46 |
MS.gene049805 | MS.gene71136 | 0.829145 | 6.06E-55 | -1.69E-46 |
MS.gene050076 | MS.gene71136 | 0.858335 | 8.84E-63 | -1.69E-46 |
MS.gene050099 | MS.gene71136 | 0.827213 | 1.77E-54 | -1.69E-46 |
MS.gene050301 | MS.gene71136 | 0.88845 | 5.84E-73 | -1.69E-46 |
MS.gene050432 | MS.gene71136 | 0.858333 | 8.85E-63 | -1.69E-46 |
MS.gene050670 | MS.gene71136 | 0.815172 | 1.06E-51 | -1.69E-46 |
MS.gene050767 | MS.gene71136 | 0.867922 | 9.57E-66 | -1.69E-46 |
MS.gene050770 | MS.gene71136 | 0.87001 | 2.02E-66 | -1.69E-46 |
MS.gene050783 | MS.gene71136 | 0.840099 | 1.07E-57 | -1.69E-46 |
MS.gene050812 | MS.gene71136 | 0.866608 | 2.52E-65 | -1.69E-46 |
MS.gene05101 | MS.gene71136 | 0.884948 | 1.24E-71 | -1.69E-46 |
MS.gene051387 | MS.gene71136 | 0.837259 | 5.78E-57 | -1.69E-46 |
MS.gene051471 | MS.gene71136 | 0.874258 | 7.78E-68 | -1.69E-46 |
MS.gene051582 | MS.gene71136 | 0.825598 | 4.30E-54 | -1.69E-46 |
MS.gene051663 | MS.gene71136 | 0.829117 | 6.16E-55 | -1.69E-46 |
MS.gene051666 | MS.gene71136 | 0.816622 | 5.03E-52 | -1.69E-46 |
MS.gene051692 | MS.gene71136 | 0.817941 | 2.54E-52 | -1.69E-46 |
MS.gene051877 | MS.gene71136 | 0.811472 | 6.88E-51 | -1.69E-46 |
MS.gene052078 | MS.gene71136 | 0.853348 | 2.54E-61 | -1.69E-46 |
MS.gene052178 | MS.gene71136 | 0.813116 | 3.01E-51 | -1.69E-46 |
MS.gene052188 | MS.gene71136 | 0.868988 | 4.34E-66 | -1.69E-46 |
MS.gene052253 | MS.gene71136 | 0.811972 | 5.36E-51 | -1.69E-46 |
MS.gene052271 | MS.gene71136 | 0.811376 | 7.22E-51 | -1.69E-46 |
MS.gene052290 | MS.gene71136 | 0.819762 | 9.79E-53 | -1.69E-46 |
MS.gene052310 | MS.gene71136 | 0.868032 | 8.82E-66 | -1.69E-46 |
MS.gene052322 | MS.gene71136 | 0.83683 | 7.43E-57 | -1.69E-46 |
MS.gene052326 | MS.gene71136 | 0.894745 | 1.85E-75 | -1.69E-46 |
MS.gene052340 | MS.gene71136 | 0.814443 | 1.54E-51 | -1.69E-46 |
MS.gene052379 | MS.gene71136 | 0.816583 | 5.13E-52 | -1.69E-46 |
MS.gene052421 | MS.gene71136 | 0.830207 | 3.34E-55 | -1.69E-46 |
MS.gene052481 | MS.gene71136 | 0.810755 | 9.84E-51 | -1.69E-46 |
MS.gene052484 | MS.gene71136 | 0.811249 | 7.69E-51 | -1.69E-46 |
MS.gene052485 | MS.gene71136 | 0.853988 | 1.66E-61 | -1.69E-46 |
MS.gene053103 | MS.gene71136 | 0.805137 | 1.54E-49 | -1.69E-46 |
MS.gene053107 | MS.gene71136 | 0.816687 | 4.86E-52 | -1.69E-46 |
MS.gene053322 | MS.gene71136 | 0.85927 | 4.65E-63 | -1.69E-46 |
MS.gene053557 | MS.gene71136 | 0.804114 | 2.52E-49 | -1.69E-46 |
MS.gene053813 | MS.gene71136 | 0.839148 | 1.88E-57 | -1.69E-46 |
MS.gene053836 | MS.gene71136 | 0.838853 | 2.25E-57 | -1.69E-46 |
MS.gene054123 | MS.gene71136 | 0.902791 | 6.75E-79 | -1.69E-46 |
MS.gene054376 | MS.gene71136 | 0.871587 | 6.10E-67 | -1.69E-46 |
MS.gene05455 | MS.gene71136 | 0.869693 | 2.56E-66 | -1.69E-46 |
MS.gene054802 | MS.gene71136 | 0.891306 | 4.48E-74 | -1.69E-46 |
MS.gene054803 | MS.gene71136 | 0.892387 | 1.66E-74 | -1.69E-46 |
MS.gene054804 | MS.gene71136 | 0.89411 | 3.36E-75 | -1.69E-46 |
MS.gene054955 | MS.gene71136 | 0.802595 | 5.21E-49 | -1.69E-46 |
MS.gene05505 | MS.gene71136 | 0.811962 | 5.38E-51 | -1.69E-46 |
MS.gene055116 | MS.gene71136 | 0.801544 | 8.56E-49 | -1.69E-46 |
MS.gene055254 | MS.gene71136 | 0.813653 | 2.30E-51 | -1.69E-46 |
MS.gene055277 | MS.gene71136 | 0.867711 | 1.12E-65 | -1.69E-46 |
MS.gene055390 | MS.gene71136 | 0.891134 | 5.24E-74 | -1.69E-46 |
MS.gene055397 | MS.gene71136 | 0.870797 | 1.11E-66 | -1.69E-46 |
MS.gene055412 | MS.gene71136 | 0.885426 | 8.22E-72 | -1.69E-46 |
MS.gene055422 | MS.gene71136 | 0.879132 | 1.60E-69 | -1.69E-46 |
MS.gene055428 | MS.gene71136 | 0.860356 | 2.19E-63 | -1.69E-46 |
MS.gene055499 | MS.gene71136 | 0.846973 | 1.55E-59 | -1.69E-46 |
MS.gene055647 | MS.gene71136 | 0.831914 | 1.27E-55 | -1.69E-46 |
MS.gene055896 | MS.gene71136 | 0.858851 | 6.20E-63 | -1.69E-46 |
MS.gene05592 | MS.gene71136 | 0.805814 | 1.11E-49 | -1.69E-46 |
MS.gene055930 | MS.gene71136 | 0.843236 | 1.59E-58 | -1.69E-46 |
MS.gene056407 | MS.gene71136 | 0.851291 | 9.77E-61 | -1.69E-46 |
MS.gene056410 | MS.gene71136 | 0.828778 | 7.44E-55 | -1.69E-46 |
MS.gene056609 | MS.gene71136 | 0.858108 | 1.03E-62 | -1.69E-46 |
MS.gene056612 | MS.gene71136 | 0.82392 | 1.07E-53 | -1.69E-46 |
MS.gene056659 | MS.gene71136 | 0.802261 | 6.10E-49 | -1.69E-46 |
MS.gene056796 | MS.gene71136 | 0.819616 | 1.06E-52 | -1.69E-46 |
MS.gene056897 | MS.gene71136 | 0.800511 | 1.39E-48 | -1.69E-46 |
MS.gene057011 | MS.gene71136 | 0.875377 | 3.23E-68 | -1.69E-46 |
MS.gene05702 | MS.gene71136 | 0.83391 | 4.07E-56 | -1.69E-46 |
MS.gene057121 | MS.gene71136 | 0.820403 | 6.99E-53 | -1.69E-46 |
MS.gene057123 | MS.gene71136 | 0.830768 | 2.44E-55 | -1.69E-46 |
MS.gene057124 | MS.gene71136 | 0.8135 | 2.48E-51 | -1.69E-46 |
MS.gene057129 | MS.gene71136 | 0.858305 | 9.02E-63 | -1.69E-46 |
MS.gene057146 | MS.gene71136 | 0.854361 | 1.30E-61 | -1.69E-46 |
MS.gene057295 | MS.gene71136 | 0.83671 | 7.98E-57 | -1.69E-46 |
MS.gene05733 | MS.gene71136 | 0.805622 | 1.22E-49 | -1.69E-46 |
MS.gene05735 | MS.gene71136 | 0.817665 | 2.93E-52 | -1.69E-46 |
MS.gene057416 | MS.gene71136 | 0.812354 | 4.42E-51 | -1.69E-46 |
MS.gene057448 | MS.gene71136 | 0.817288 | 3.56E-52 | -1.69E-46 |
MS.gene057449 | MS.gene71136 | 0.825525 | 4.47E-54 | -1.69E-46 |
MS.gene057450 | MS.gene71136 | 0.833515 | 5.10E-56 | -1.69E-46 |
MS.gene057478 | MS.gene71136 | -0.800513 | 1.39E-48 | -1.69E-46 |
MS.gene057823 | MS.gene71136 | 0.803336 | 3.66E-49 | -1.69E-46 |
MS.gene058002 | MS.gene71136 | 0.854598 | 1.11E-61 | -1.69E-46 |
MS.gene058019 | MS.gene71136 | 0.83406 | 3.73E-56 | -1.69E-46 |
MS.gene05811 | MS.gene71136 | 0.840561 | 8.08E-58 | -1.69E-46 |
MS.gene058233 | MS.gene71136 | 0.823355 | 1.45E-53 | -1.69E-46 |
MS.gene058276 | MS.gene71136 | 0.808413 | 3.14E-50 | -1.69E-46 |
MS.gene058293 | MS.gene71136 | 0.882748 | 8.03E-71 | -1.69E-46 |
MS.gene058323 | MS.gene71136 | 0.81371 | 2.23E-51 | -1.69E-46 |
MS.gene058365 | MS.gene71136 | 0.853553 | 2.21E-61 | -1.69E-46 |
MS.gene058660 | MS.gene71136 | 0.911094 | 8.97E-83 | -1.69E-46 |
MS.gene058787 | MS.gene71136 | 0.803336 | 3.66E-49 | -1.69E-46 |
MS.gene05886 | MS.gene71136 | 0.803245 | 3.82E-49 | -1.69E-46 |
MS.gene058928 | MS.gene71136 | 0.835636 | 1.50E-56 | -1.69E-46 |
MS.gene058993 | MS.gene71136 | 0.860055 | 2.70E-63 | -1.69E-46 |
MS.gene05907 | MS.gene71136 | 0.8548 | 9.67E-62 | -1.69E-46 |
MS.gene059326 | MS.gene71136 | 0.815002 | 1.16E-51 | -1.69E-46 |
MS.gene059518 | MS.gene71136 | 0.817189 | 3.75E-52 | -1.69E-46 |
MS.gene059536 | MS.gene71136 | 0.838683 | 2.49E-57 | -1.69E-46 |
MS.gene059597 | MS.gene71136 | 0.87399 | 9.58E-68 | -1.69E-46 |
MS.gene05959 | MS.gene71136 | 0.855275 | 7.04E-62 | -1.69E-46 |
MS.gene059676 | MS.gene71136 | 0.888538 | 5.40E-73 | -1.69E-46 |
MS.gene059688 | MS.gene71136 | 0.857953 | 1.15E-62 | -1.69E-46 |
MS.gene059692 | MS.gene71136 | 0.858881 | 6.08E-63 | -1.69E-46 |
MS.gene059695 | MS.gene71136 | 0.860071 | 2.67E-63 | -1.69E-46 |
MS.gene059708 | MS.gene71136 | 0.852852 | 3.52E-61 | -1.69E-46 |
MS.gene059711 | MS.gene71136 | 0.810284 | 1.24E-50 | -1.69E-46 |
MS.gene05984 | MS.gene71136 | 0.80037 | 1.49E-48 | -1.69E-46 |
MS.gene059894 | MS.gene71136 | 0.84682 | 1.71E-59 | -1.69E-46 |
MS.gene059960 | MS.gene71136 | 0.889126 | 3.20E-73 | -1.69E-46 |
MS.gene060005 | MS.gene71136 | 0.816654 | 4.95E-52 | -1.69E-46 |
MS.gene060193 | MS.gene71136 | 0.807219 | 5.63E-50 | -1.69E-46 |
MS.gene06037 | MS.gene71136 | 0.819001 | 1.46E-52 | -1.69E-46 |
MS.gene060403 | MS.gene71136 | 0.806985 | 6.30E-50 | -1.69E-46 |
MS.gene060407 | MS.gene71136 | 0.82859 | 8.26E-55 | -1.69E-46 |
MS.gene060559 | MS.gene71136 | 0.805214 | 1.49E-49 | -1.69E-46 |
MS.gene060804 | MS.gene71136 | 0.825007 | 5.93E-54 | -1.69E-46 |
MS.gene060818 | MS.gene71136 | 0.836359 | 9.80E-57 | -1.69E-46 |
MS.gene06090 | MS.gene71136 | 0.828757 | 7.53E-55 | -1.69E-46 |
MS.gene061049 | MS.gene71136 | 0.833486 | 5.19E-56 | -1.69E-46 |
MS.gene061051 | MS.gene71136 | -0.849984 | 2.28E-60 | -1.69E-46 |
MS.gene061200 | MS.gene71136 | 0.884301 | 2.15E-71 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71136.t1 | MTR_2g060420 | 97.263 | 548 | 14 | 1 | 1 | 548 | 1 | 547 | 0.0 | 1097 |
MS.gene71136.t1 | MTR_2g060420 | 96.535 | 404 | 13 | 1 | 1 | 404 | 1 | 403 | 0.0 | 791 |
MS.gene71136.t1 | MTR_2g060420 | 97.000 | 400 | 11 | 1 | 1 | 400 | 1 | 399 | 0.0 | 790 |
MS.gene71136.t1 | MTR_2g060420 | 96.970 | 363 | 10 | 1 | 1 | 363 | 1 | 362 | 0.0 | 716 |
MS.gene71136.t1 | MTR_4g074870 | 23.732 | 493 | 277 | 14 | 51 | 481 | 52 | 507 | 6.20e-25 | 109 |
MS.gene71136.t1 | MTR_7g090640 | 26.911 | 327 | 194 | 8 | 203 | 525 | 298 | 583 | 7.18e-24 | 106 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71136.t1 | AT3G47450 | 64.085 | 568 | 177 | 6 | 1 | 548 | 1 | 561 | 0.0 | 696 |
MS.gene71136.t1 | AT3G47450 | 63.732 | 568 | 179 | 6 | 1 | 548 | 1 | 561 | 0.0 | 692 |
MS.gene71136.t1 | AT4G10620 | 23.185 | 496 | 276 | 12 | 86 | 520 | 79 | 530 | 6.52e-25 | 109 |
Find 147 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACAAACCTTCTTCTCTTTC+TGG | 0.093378 | 4.1:-56672803 | None:intergenic |
GTGTGAATTTGAGGGAATTT+GGG | 0.193149 | 4.1:-56669808 | None:intergenic |
TTAGTCACAACCATTATTAT+TGG | 0.202467 | 4.1:-56672257 | None:intergenic |
ATTCAAATTAATGCTTTCTT+TGG | 0.211740 | 4.1:+56675575 | MS.gene71136:CDS |
GGTGTGAATTTGAGGGAATT+TGG | 0.249809 | 4.1:-56669809 | None:intergenic |
CAAAGCTCTAATTGTCAAAT+TGG | 0.252827 | 4.1:+56670605 | MS.gene71136:CDS |
TAAAATGTTAAACATGTTTC+CGG | 0.262455 | 4.1:-56676113 | None:intergenic |
GGAATTCAAAAGTACCATTT+TGG | 0.269489 | 4.1:-56677496 | None:intergenic |
AAAGGTGCTTCGACAGTAAA+TGG | 0.298977 | 4.1:+56675920 | MS.gene71136:CDS |
TAGATATAACTTACTTAATA+AGG | 0.304884 | 4.1:-56674039 | None:intergenic |
GCTGTTCCTGGAACTACCTT+AGG | 0.306684 | 4.1:+56675548 | MS.gene71136:CDS |
TTTGAGGGAATTTGGGGTTT+GGG | 0.325553 | 4.1:-56669801 | None:intergenic |
AGCACCTTTGTTTGTATTGT+CGG | 0.326011 | 4.1:-56675906 | None:intergenic |
ATCTTAATTGTGTTGGGGAT+TGG | 0.326100 | 4.1:+56672394 | MS.gene71136:CDS |
AAGAAAGCATTAATTTGAAT+TGG | 0.326794 | 4.1:-56675572 | None:intergenic |
GCCTTCTGGTAAGCGAGATT+TGG | 0.327081 | 4.1:-56669869 | None:intergenic |
CCAGTACAGTCTGCTGTTCC+TGG | 0.333865 | 4.1:+56675536 | MS.gene71136:CDS |
AAATCATTGGTAGGAATAAC+TGG | 0.335779 | 4.1:+56672765 | MS.gene71136:CDS |
ATATGAATTGGCATCCTCTT+AGG | 0.337943 | 4.1:-56676140 | None:intergenic |
AATAATAATGGTTGTGACTA+AGG | 0.353009 | 4.1:+56672259 | MS.gene71136:CDS |
TACTGTTGTTGTTCTGTTTG+AGG | 0.355375 | 4.1:-56669966 | None:intergenic |
TCTTAATTGTGTTGGGGATT+GGG | 0.360762 | 4.1:+56672395 | MS.gene71136:CDS |
ACAAACCAATTCATAGGTTT+CGG | 0.367199 | 4.1:-56670094 | None:intergenic |
CAAATTAATGCTTTCTTTGG+AGG | 0.367521 | 4.1:+56675578 | MS.gene71136:CDS |
TTGGGGTTTGGGAGGGATAG+AGG | 0.369535 | 4.1:-56669790 | None:intergenic |
CAAGGTTTGGTGTGAATTTG+AGG | 0.371755 | 4.1:-56669817 | None:intergenic |
ATACTGATCTTAATTGTGTT+GGG | 0.374200 | 4.1:+56672388 | MS.gene71136:CDS |
CCTCTCCGAAACCTATGAAT+TGG | 0.374687 | 4.1:+56670089 | MS.gene71136:CDS |
CCATTACCAGTAGGCAAGGC+TGG | 0.375446 | 4.1:+56677421 | MS.gene71136:CDS |
GGGAAGAGATGTTTACATTC+TGG | 0.376268 | 4.1:+56673390 | MS.gene71136:intron |
CAATTTGACAATTAGAGCTT+TGG | 0.384138 | 4.1:-56670604 | None:intergenic |
GCAGCGGCTCCGGTGCCTTC+TGG | 0.386212 | 4.1:-56669883 | None:intergenic |
AGAGATACAAACCAATTCAT+AGG | 0.389294 | 4.1:-56670100 | None:intergenic |
CAAATGACTGCTGGCGTTCG+AGG | 0.395487 | 4.1:-56669927 | None:intergenic |
ACTGAGGGGCCTATCTTTCC+CGG | 0.397514 | 4.1:+56675781 | MS.gene71136:CDS |
TGTTAGAATTGATGTCTTGA+AGG | 0.398535 | 4.1:+56675976 | MS.gene71136:CDS |
ATTGGCCCTAAGGTAGTTCC+AGG | 0.402457 | 4.1:-56675554 | None:intergenic |
GTTGATATTGTTGACTTCAA+TGG | 0.403407 | 4.1:+56672194 | MS.gene71136:CDS |
ATTTGAGGGAATTTGGGGTT+TGG | 0.411175 | 4.1:-56669802 | None:intergenic |
GAAAAGAGAAGGCTGAGAAC+TGG | 0.412977 | 4.1:+56676738 | MS.gene71136:CDS |
CCAGCCTTGCCTACTGGTAA+TGG | 0.414914 | 4.1:-56677421 | None:intergenic |
TCTGTGGGCACCATATGAAT+TGG | 0.416048 | 4.1:-56676152 | None:intergenic |
CTTTGTGCAGCTGCAGCCAC+TGG | 0.422464 | 4.1:-56675506 | None:intergenic |
GTTCTGTTTGAGGATGAGTT+TGG | 0.425972 | 4.1:-56669956 | None:intergenic |
GATACTGATCTTAATTGTGT+TGG | 0.426541 | 4.1:+56672387 | MS.gene71136:CDS |
GAGGGAATTTGGGGTTTGGG+AGG | 0.434351 | 4.1:-56669798 | None:intergenic |
TCTCACAAGTTCAAAATCAT+TGG | 0.436735 | 4.1:+56672752 | MS.gene71136:CDS |
GGATAGAGGTGTTAAGAAAG+TGG | 0.439301 | 4.1:-56669776 | None:intergenic |
ATTGCTGTCGCTTCTTGCTA+TGG | 0.444708 | 4.1:+56670018 | MS.gene71136:CDS |
TGGTGACGGAGCAGCGGCTC+CGG | 0.447078 | 4.1:-56669893 | None:intergenic |
AGCAGGAAATGAGACCAAAA+TGG | 0.452527 | 4.1:+56677482 | MS.gene71136:CDS |
GCTTGCGATATTGCTATATC+AGG | 0.456295 | 4.1:+56677268 | MS.gene71136:CDS |
TGGTTGCTTCAAATGACTGC+TGG | 0.459608 | 4.1:-56669936 | None:intergenic |
TGGTGCTAATCCAATAATAA+TGG | 0.459624 | 4.1:+56672247 | MS.gene71136:CDS |
AAGAACATACCGGGAAAGAT+AGG | 0.460823 | 4.1:-56675790 | None:intergenic |
TCTGCCCCAGCCTTGCCTAC+TGG | 0.461104 | 4.1:-56677427 | None:intergenic |
GTCGCTTCTTGCTATGGCTG+TGG | 0.464139 | 4.1:+56670024 | MS.gene71136:CDS |
GCAGAGAATGAGACAAGGTT+TGG | 0.467850 | 4.1:-56669830 | None:intergenic |
AAATCCAGGAGCGTCATTAT+CGG | 0.470024 | 4.1:-56670064 | None:intergenic |
AATTCATCTGCTTTCTCTGT+GGG | 0.471683 | 4.1:-56676167 | None:intergenic |
CTGTTCCTGGAACTACCTTA+GGG | 0.475173 | 4.1:+56675549 | MS.gene71136:CDS |
TGTTGGGGATTGGGTTGTAG+AGG | 0.476151 | 4.1:+56672404 | MS.gene71136:CDS |
AAAATATTGAAAATCCATTC+AGG | 0.478937 | 4.1:-56675943 | None:intergenic |
AGGGAATTTGGGGTTTGGGA+GGG | 0.481246 | 4.1:-56669797 | None:intergenic |
GAGGTGTTAAGAAAGTGGAT+AGG | 0.484543 | 4.1:-56669771 | None:intergenic |
AGGTGTTAAGAAAGTGGATA+GGG | 0.484699 | 4.1:-56669770 | None:intergenic |
TAAGAGGATGCCAATTCATA+TGG | 0.485520 | 4.1:+56676142 | MS.gene71136:CDS |
TTATTGTCACAGAAAGAACT+TGG | 0.486062 | 4.1:+56676692 | MS.gene71136:intron |
AAGGTTTGGTGTGAATTTGA+GGG | 0.486640 | 4.1:-56669816 | None:intergenic |
CAATTAAGATCAGTATCTCT+TGG | 0.489229 | 4.1:-56672381 | None:intergenic |
ATAACTGCTGTTGGAGGACA+TGG | 0.492972 | 4.1:+56670510 | MS.gene71136:CDS |
ATTAATGCTTTCTTTGGAGG+AGG | 0.494082 | 4.1:+56675581 | MS.gene71136:CDS |
CATTACCAGTAGGCAAGGCT+GGG | 0.495878 | 4.1:+56677422 | MS.gene71136:CDS |
CCAGGAACAGCAGACTGTAC+TGG | 0.496203 | 4.1:-56675536 | None:intergenic |
CGTTCGAGGAACTTCTCGCC+TGG | 0.498839 | 4.1:-56669913 | None:intergenic |
AGAAATCCAGAAAGAGAAGA+AGG | 0.499062 | 4.1:+56672797 | MS.gene71136:CDS |
AGCAAGGGAGGATAGATCTT+CGG | 0.499291 | 4.1:-56675747 | None:intergenic |
CTGTGGTGGAGATGAACTCC+TGG | 0.504637 | 4.1:-56675704 | None:intergenic |
TCGACAGTAAATGGCCTGAA+TGG | 0.506669 | 4.1:+56675929 | MS.gene71136:CDS |
GATATTGCTATATCAGGTCT+AGG | 0.507163 | 4.1:+56677274 | MS.gene71136:CDS |
TGCTCCTAAAAGCCGACTGA+GGG | 0.509262 | 4.1:+56675766 | MS.gene71136:CDS |
TCCCGAGTGAGAGATCTTGC+TGG | 0.512842 | 4.1:+56672227 | MS.gene71136:CDS |
TAATGCTTTCTTTGGAGGAG+GGG | 0.513509 | 4.1:+56675583 | MS.gene71136:CDS |
ATTAATTTGAATTGGCCCTA+AGG | 0.514252 | 4.1:-56675564 | None:intergenic |
AGGATGGCTTTCTGTTGAGC+CGG | 0.515806 | 4.1:+56677294 | MS.gene71136:CDS |
AGGAACTTCTCGCCTGGTGA+CGG | 0.516252 | 4.1:-56669907 | None:intergenic |
ACAAAATGCAATAGACACTA+CGG | 0.525515 | 4.1:+56677342 | MS.gene71136:CDS |
ACAGCAATGGAAGATTTAAG+AGG | 0.528143 | 4.1:-56670003 | None:intergenic |
TAGGCAAGGCTGGGGCAGAA+TGG | 0.535765 | 4.1:+56677431 | MS.gene71136:CDS |
TACTGATCTTAATTGTGTTG+GGG | 0.536356 | 4.1:+56672389 | MS.gene71136:CDS |
CACCAGCAAGATCTCTCACT+CGG | 0.537176 | 4.1:-56672229 | None:intergenic |
CAAAATGCAATAGACACTAC+GGG | 0.543069 | 4.1:+56677343 | MS.gene71136:CDS |
TTACAGGGTTCAGCTAATGT+TGG | 0.543821 | 4.1:+56673996 | MS.gene71136:intron |
GGAGCCGCTGCTCCGTCACC+AGG | 0.550022 | 4.1:+56669895 | MS.gene71136:CDS |
TTAATGCTTTCTTTGGAGGA+GGG | 0.553702 | 4.1:+56675582 | MS.gene71136:CDS |
CAGCTTAAAACTGTTCTATG+TGG | 0.554450 | 4.1:+56670456 | MS.gene71136:CDS |
AATCTGTGTGACCTACCAAC+CGG | 0.555680 | 4.1:-56677313 | None:intergenic |
TGTGAATTTGAGGGAATTTG+GGG | 0.556857 | 4.1:-56669807 | None:intergenic |
AGCTTAAAACTGTTCTATGT+GGG | 0.557452 | 4.1:+56670457 | MS.gene71136:CDS |
TTTCTGTTGAGCCGGTTGGT+AGG | 0.558950 | 4.1:+56677302 | MS.gene71136:CDS |
ACTTCCGATAATGACGCTCC+TGG | 0.559301 | 4.1:+56670060 | MS.gene71136:CDS |
TGGCTTTCTGTTGAGCCGGT+TGG | 0.564204 | 4.1:+56677298 | MS.gene71136:CDS |
GGAGGACATGGAGGATACTC+TGG | 0.566422 | 4.1:+56670522 | MS.gene71136:CDS |
TCATTATCGGAAGTTTGTAA+AGG | 0.566778 | 4.1:-56670051 | None:intergenic |
ACAAGTTCAAAATCATTGGT+AGG | 0.566810 | 4.1:+56672756 | MS.gene71136:CDS |
AACAGGTTTGGGGACATGTA+CGG | 0.568281 | 4.1:-56677380 | None:intergenic |
TAAGATCAGTATCTCTTGGA+AGG | 0.574434 | 4.1:-56672377 | None:intergenic |
GGTGAAATGATAACTGCTGT+TGG | 0.575304 | 4.1:+56670501 | MS.gene71136:CDS |
AGAATTAACAGATAAAGAGC+AGG | 0.576236 | 4.1:+56677465 | MS.gene71136:CDS |
GCCTTGCCTACTGGTAATGG+TGG | 0.579377 | 4.1:-56677418 | None:intergenic |
ATATTTGATACCAGAGACAA+TGG | 0.580022 | 4.1:+56675472 | MS.gene71136:intron |
TAAAATTTGAAGATACTGAA+AGG | 0.581028 | 4.1:+56676792 | MS.gene71136:CDS |
CCCACCAAGTGGAAAAGAGA+AGG | 0.589412 | 4.1:+56676727 | MS.gene71136:CDS |
AAATTCATCTGCTTTCTCTG+TGG | 0.589837 | 4.1:-56676168 | None:intergenic |
GCCACCATTACCAGTAGGCA+AGG | 0.591193 | 4.1:+56677417 | MS.gene71136:CDS |
CAACTGCAGTTTGCCTGTGG+TGG | 0.591370 | 4.1:-56675718 | None:intergenic |
GATATAGCAATATCGCAAGC+TGG | 0.591658 | 4.1:-56677265 | None:intergenic |
TTTCACCATGAGACAAAAGC+TGG | 0.591764 | 4.1:-56670485 | None:intergenic |
TCTGGTAAGCGAGATTTGGA+AGG | 0.595760 | 4.1:-56669865 | None:intergenic |
GTTTCGGAGAGGACAAATCC+AGG | 0.598853 | 4.1:-56670078 | None:intergenic |
TCCAAATCTCGCTTACCAGA+AGG | 0.599238 | 4.1:+56669868 | MS.gene71136:CDS |
CAGGAGTTCATCTCCACCAC+AGG | 0.599540 | 4.1:+56675705 | MS.gene71136:CDS |
CTCGCCTGGTGACGGAGCAG+CGG | 0.600406 | 4.1:-56669899 | None:intergenic |
TTGCTATATCAGGTCTAGGA+TGG | 0.601269 | 4.1:+56677278 | MS.gene71136:CDS |
CAGAAACTGTATGACACTCC+AGG | 0.601341 | 4.1:+56675686 | MS.gene71136:intron |
ACGAGGCCACCATTACCAGT+AGG | 0.618637 | 4.1:+56677412 | MS.gene71136:CDS |
TTGCTCCTAAAAGCCGACTG+AGG | 0.619264 | 4.1:+56675765 | MS.gene71136:CDS |
ATAGCAAGAAGCGACAGCAA+TGG | 0.623360 | 4.1:-56670016 | None:intergenic |
GGAAAGATAGGCCCCTCAGT+CGG | 0.624772 | 4.1:-56675778 | None:intergenic |
TCTCGCTTACCAGAAGGCAC+CGG | 0.635447 | 4.1:+56669874 | MS.gene71136:CDS |
CTTTCCGACAATACAAACAA+AGG | 0.637415 | 4.1:+56675902 | MS.gene71136:CDS |
GAGAAGGCTGAGAACTGGAG+AGG | 0.643970 | 4.1:+56676743 | MS.gene71136:CDS |
GAAATGATAACTGCTGTTGG+AGG | 0.645323 | 4.1:+56670504 | MS.gene71136:CDS |
TTAAAACTGTTCTATGTGGG+CGG | 0.648875 | 4.1:+56670460 | MS.gene71136:CDS |
ACCAGCAAGATCTCTCACTC+GGG | 0.656086 | 4.1:-56672228 | None:intergenic |
AGGGAGGATAGATCTTCGGA+AGG | 0.666269 | 4.1:-56675743 | None:intergenic |
ATTACCAGTAGGCAAGGCTG+GGG | 0.666863 | 4.1:+56677423 | MS.gene71136:CDS |
ACTGCTGTTGGAGGACATGG+AGG | 0.674606 | 4.1:+56670513 | MS.gene71136:CDS |
GGACATGGAGGATACTCTGG+CGG | 0.680136 | 4.1:+56670525 | MS.gene71136:CDS |
GAACAACTGCAGTTTGCCTG+TGG | 0.695137 | 4.1:-56675721 | None:intergenic |
AATGGCATATAATGATCCAG+TGG | 0.696160 | 4.1:+56675490 | MS.gene71136:CDS |
GCTCCTAAAAGCCGACTGAG+GGG | 0.696766 | 4.1:+56675767 | MS.gene71136:CDS |
GTTCTGCTAATCCCACCAAG+TGG | 0.707656 | 4.1:+56676716 | MS.gene71136:CDS |
CCAATTCATAGGTTTCGGAG+AGG | 0.711908 | 4.1:-56670089 | None:intergenic |
AAAATGCAATAGACACTACG+GGG | 0.732571 | 4.1:+56677344 | MS.gene71136:CDS |
AATTCGCAGAGAATGAGACA+AGG | 0.739526 | 4.1:-56669835 | None:intergenic |
AAATGCAATAGACACTACGG+GGG | 0.756248 | 4.1:+56677345 | MS.gene71136:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 56669757 | 56677513 | 56669757 | ID=MS.gene71136 |
chr4.1 | mRNA | 56669757 | 56677513 | 56669757 | ID=MS.gene71136.t1;Parent=MS.gene71136 |
chr4.1 | exon | 56669757 | 56670110 | 56669757 | ID=MS.gene71136.t1.exon1;Parent=MS.gene71136.t1 |
chr4.1 | CDS | 56669757 | 56670110 | 56669757 | ID=cds.MS.gene71136.t1;Parent=MS.gene71136.t1 |
chr4.1 | exon | 56670441 | 56670626 | 56670441 | ID=MS.gene71136.t1.exon2;Parent=MS.gene71136.t1 |
chr4.1 | CDS | 56670441 | 56670626 | 56670441 | ID=cds.MS.gene71136.t1;Parent=MS.gene71136.t1 |
chr4.1 | exon | 56672194 | 56672280 | 56672194 | ID=MS.gene71136.t1.exon3;Parent=MS.gene71136.t1 |
chr4.1 | CDS | 56672194 | 56672280 | 56672194 | ID=cds.MS.gene71136.t1;Parent=MS.gene71136.t1 |
chr4.1 | exon | 56672369 | 56672448 | 56672369 | ID=MS.gene71136.t1.exon4;Parent=MS.gene71136.t1 |
chr4.1 | CDS | 56672369 | 56672448 | 56672369 | ID=cds.MS.gene71136.t1;Parent=MS.gene71136.t1 |
chr4.1 | exon | 56672737 | 56672818 | 56672737 | ID=MS.gene71136.t1.exon5;Parent=MS.gene71136.t1 |
chr4.1 | CDS | 56672737 | 56672818 | 56672737 | ID=cds.MS.gene71136.t1;Parent=MS.gene71136.t1 |
chr4.1 | exon | 56673391 | 56673411 | 56673391 | ID=MS.gene71136.t1.exon6;Parent=MS.gene71136.t1 |
chr4.1 | CDS | 56673391 | 56673411 | 56673391 | ID=cds.MS.gene71136.t1;Parent=MS.gene71136.t1 |
chr4.1 | exon | 56674002 | 56674047 | 56674002 | ID=MS.gene71136.t1.exon7;Parent=MS.gene71136.t1 |
chr4.1 | CDS | 56674002 | 56674047 | 56674002 | ID=cds.MS.gene71136.t1;Parent=MS.gene71136.t1 |
chr4.1 | exon | 56675486 | 56675604 | 56675486 | ID=MS.gene71136.t1.exon8;Parent=MS.gene71136.t1 |
chr4.1 | CDS | 56675486 | 56675604 | 56675486 | ID=cds.MS.gene71136.t1;Parent=MS.gene71136.t1 |
chr4.1 | exon | 56675689 | 56675802 | 56675689 | ID=MS.gene71136.t1.exon9;Parent=MS.gene71136.t1 |
chr4.1 | CDS | 56675689 | 56675802 | 56675689 | ID=cds.MS.gene71136.t1;Parent=MS.gene71136.t1 |
chr4.1 | exon | 56675890 | 56675997 | 56675890 | ID=MS.gene71136.t1.exon10;Parent=MS.gene71136.t1 |
chr4.1 | CDS | 56675890 | 56675997 | 56675890 | ID=cds.MS.gene71136.t1;Parent=MS.gene71136.t1 |
chr4.1 | exon | 56676107 | 56676196 | 56676107 | ID=MS.gene71136.t1.exon11;Parent=MS.gene71136.t1 |
chr4.1 | CDS | 56676107 | 56676196 | 56676107 | ID=cds.MS.gene71136.t1;Parent=MS.gene71136.t1 |
chr4.1 | exon | 56676704 | 56676813 | 56676704 | ID=MS.gene71136.t1.exon12;Parent=MS.gene71136.t1 |
chr4.1 | CDS | 56676704 | 56676813 | 56676704 | ID=cds.MS.gene71136.t1;Parent=MS.gene71136.t1 |
chr4.1 | exon | 56677264 | 56677513 | 56677264 | ID=MS.gene71136.t1.exon13;Parent=MS.gene71136.t1 |
chr4.1 | CDS | 56677264 | 56677513 | 56677264 | ID=cds.MS.gene71136.t1;Parent=MS.gene71136.t1 |
Gene Sequence |
Protein sequence |