AlfalfaGEDB | MS.gene91314

M. sativa cultivar XinJiangDaYe / MS.gene91314

KEGG: K23735
GO: GO:0003674 GO:0003824 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0033819 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051604 GO:0071704 GO:1901564
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91314.t1	XP_013469979.1	97	235	7	0	1	235	1	235	2.10E-130	474.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91314.t1	Q9SXP7	74.0	235	61	0	1	235	1	235	1.8e-101	370.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91314.t1	A0A072VQE6	97.0	235	7	0	1	235	1	235	1.5e-130	474.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene91314	0.870207	1.74E-66	-1.69E-46
MS.gene049171	MS.gene91314	0.804039	2.62E-49	-1.69E-46
MS.gene049217	MS.gene91314	0.866733	2.30E-65	-1.69E-46
MS.gene049222	MS.gene91314	0.830269	3.23E-55	-1.69E-46
MS.gene049236	MS.gene91314	-0.823946	1.05E-53	-1.69E-46
MS.gene049285	MS.gene91314	0.826929	2.07E-54	-1.69E-46
MS.gene049320	MS.gene91314	0.818692	1.72E-52	-1.69E-46
MS.gene049351	MS.gene91314	0.849406	3.30E-60	-1.69E-46
MS.gene049356	MS.gene91314	0.800074	1.71E-48	-1.69E-46
MS.gene049427	MS.gene91314	0.870885	1.04E-66	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene015317	MS.gene91314	PPI
MS.gene09661	MS.gene91314	PPI
MS.gene91314	MS.gene059677	PPI
MS.gene91314	MS.gene21474	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91314.t1	MTR_1g106190	97.021	235	7	0	1	235	1	235	2.04e-174	479
MS.gene91314.t1	MTR_3g111580	32.143	168	98	7	1	156	44	207	4.00e-16	75.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91314.t1	AT1G04640	74.043	235	61	0	1	235	1	235	1.42e-132	373
MS.gene91314.t1	AT1G04640	74.043	235	61	0	1	235	1	235	1.42e-132	373
MS.gene91314.t1	AT1G47578	35.323	201	117	4	23	214	70	266	5.43e-34	123
MS.gene91314.t1	AT4G31050	35.047	214	122	6	14	214	54	263	5.95e-34	123

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Find 56 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCCTTGAGGTATGGAAAA+TGG	0.246851	1.3:+72921239	MS.gene91314:CDS
AAGCATCCTCCTTCCAAACC+AGG	0.571828	1.3:-72921878	None:intergenic
AATGGGAGTCGTCAACTATT+TGG	0.263377	1.3:+72921257	MS.gene91314:CDS
ACCCTTGAGGTATGGAAAAT+GGG	0.459093	1.3:+72921240	MS.gene91314:CDS
ACTGCAAGAAAAGCTAGTCT+TGG	0.489810	1.3:+72921290	MS.gene91314:CDS
AGAAATAATACAAGAGCAGT+TGG	0.475927	1.3:+72921821	MS.gene91314:CDS
AGATAGGTGCAATCGGTGTT+CGG	0.488844	1.3:+72921655	MS.gene91314:CDS
ATATCCTATTATATCGCTCC+GGG	0.515465	1.3:+72921503	MS.gene91314:CDS
ATCCTGATTTAAACTACTTT+AGG	0.329725	1.3:+72921721	MS.gene91314:CDS
ATCTGTTCCAATTCTGACTG+AGG	0.581218	1.3:-72921411	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAATAATACAAGAGCAGT+TGG	+	chr1.3:72921821-72921840	MS.gene91314:CDS	30.0%
TAATAGGATATAAAACGGCT+TGG	-	chr1.3:72921494-72921513	None:intergenic	30.0%
TATATCCTATTATATCGCTC+CGG	+	chr1.3:72921502-72921521	MS.gene91314:CDS	30.0%
TGAGTTAACTATGATTGAAC+TGG	+	chr1.3:72921563-72921582	MS.gene91314:CDS	30.0%
TGCCTAAAGTAGTTTAAATC+AGG	-	chr1.3:72921726-72921745	None:intergenic	30.0%
ATATCCTATTATATCGCTCC+GGG	+	chr1.3:72921503-72921522	MS.gene91314:CDS	35.0%
ATTAATCCCTCAGTCAGAAT+TGG	+	chr1.3:72921404-72921423	MS.gene91314:CDS	35.0%
GAAAGAAAGATAGGTGCAAT+CGG	+	chr1.3:72921648-72921667	MS.gene91314:CDS	35.0%
TCTTTATCAGCAATTCCACA+CGG	-	chr1.3:72921756-72921775	None:intergenic	35.0%
TTAACTATGATTGAACTGGC+AGG	+	chr1.3:72921567-72921586	MS.gene91314:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	72921225	72921932	72921225	ID=MS.gene91314
chr1.3	mRNA	72921225	72921932	72921225	ID=MS.gene91314.t1;Parent=MS.gene91314
chr1.3	exon	72921225	72921932	72921225	ID=MS.gene91314.t1.exon1;Parent=MS.gene91314.t1
chr1.3	CDS	72921225	72921932	72921225	ID=cds.MS.gene91314.t1;Parent=MS.gene91314.t1

Gene Sequence

>MS.gene91314

ATGAGGGCTTTGCGAACCCTTGAGGTATGGAAAATGGGAGTCGTCAACTATTTGGATGCGTTAAAACTGCAAGAAAAGCTAGTCTTGGATAGAAAATCTCATAAGAGATGTGATACTCTTCTATCTTTGCAACACCCTCCTACATACACAGTTGGCAAAAGACAAACTGTTCATAATTTATTAATCCCTCAGTCAGAATTGGAACAGATTGGCGCTGAGCTTCACTACACACAACGTGGAGGAGACATTACATTTCATGGTCCACACCAAGCCGTTTTATATCCTATTATATCGCTCCGGGACACGGGACTTGGTGCTAGAAAATTTGTAGAAAAAATTGAGTTAACTATGATTGAACTGGCAGGTCTATACGGTGTGAAAGCTTGTCCTGGACGGAAGTGCGAGACTGGGGTGTGGGTTGGAGAAAGAAAGATAGGTGCAATCGGTGTTCGGATATCGAATGCAATCACTTCTCATGGGATGGCGTTTAACATTGATCCTGATTTAAACTACTTTAGGCACATTGTACCGTGTGGAATTGCTGATAAAGAAGTGACATCTTTGAGAAGAGAGACAGATTTTGACCTTCCCGCAGAAGAAATAATACAAGAGCAGTTGGTTTCATGTTTTGCAAGAATTTTTGGTTATGATAACCTGGTTTGGAAGGAGGATGCTTCTATATTATCTGATAAAAATGAAACTGAATGA

Protein sequence

>MS.gene91314.t1

MRALRTLEVWKMGVVNYLDALKLQEKLVLDRKSHKRCDTLLSLQHPPTYTVGKRQTVHNLLIPQSELEQIGAELHYTQRGGDITFHGPHQAVLYPIISLRDTGLGARKFVEKIELTMIELAGLYGVKACPGRKCETGVWVGERKIGAIGVRISNAITSHGMAFNIDPDLNYFRHIVPCGIADKEVTSLRRETDFDLPAEEIIQEQLVSCFARIFGYDNLVWKEDASILSDKNETE