Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91314.t1 | XP_013469979.1 | 97 | 235 | 7 | 0 | 1 | 235 | 1 | 235 | 2.10E-130 | 474.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91314.t1 | Q9SXP7 | 74.0 | 235 | 61 | 0 | 1 | 235 | 1 | 235 | 1.8e-101 | 370.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91314.t1 | A0A072VQE6 | 97.0 | 235 | 7 | 0 | 1 | 235 | 1 | 235 | 1.5e-130 | 474.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene91314 | 0.870207 | 1.74E-66 | -1.69E-46 |
| MS.gene049171 | MS.gene91314 | 0.804039 | 2.62E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene91314 | 0.866733 | 2.30E-65 | -1.69E-46 |
| MS.gene049222 | MS.gene91314 | 0.830269 | 3.23E-55 | -1.69E-46 |
| MS.gene049236 | MS.gene91314 | -0.823946 | 1.05E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene91314 | 0.826929 | 2.07E-54 | -1.69E-46 |
| MS.gene049320 | MS.gene91314 | 0.818692 | 1.72E-52 | -1.69E-46 |
| MS.gene049351 | MS.gene91314 | 0.849406 | 3.30E-60 | -1.69E-46 |
| MS.gene049356 | MS.gene91314 | 0.800074 | 1.71E-48 | -1.69E-46 |
| MS.gene049427 | MS.gene91314 | 0.870885 | 1.04E-66 | -1.69E-46 |
| MS.gene049609 | MS.gene91314 | 0.861702 | 8.52E-64 | -1.69E-46 |
| MS.gene049661 | MS.gene91314 | 0.849388 | 3.34E-60 | -1.69E-46 |
| MS.gene049662 | MS.gene91314 | 0.833991 | 3.88E-56 | -1.69E-46 |
| MS.gene049760 | MS.gene91314 | 0.808378 | 3.19E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene91314 | 0.888318 | 6.57E-73 | -1.69E-46 |
| MS.gene050076 | MS.gene91314 | 0.848501 | 5.89E-60 | -1.69E-46 |
| MS.gene050163 | MS.gene91314 | 0.815391 | 9.47E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene91314 | 0.803097 | 4.10E-49 | -1.69E-46 |
| MS.gene050380 | MS.gene91314 | -0.812749 | 3.62E-51 | -1.69E-46 |
| MS.gene050397 | MS.gene91314 | 0.813413 | 2.59E-51 | -1.69E-46 |
| MS.gene050432 | MS.gene91314 | 0.862122 | 6.34E-64 | -1.69E-46 |
| MS.gene050529 | MS.gene91314 | 0.806457 | 8.15E-50 | -1.69E-46 |
| MS.gene050538 | MS.gene91314 | 0.83209 | 1.15E-55 | -1.69E-46 |
| MS.gene050593 | MS.gene91314 | 0.854758 | 9.94E-62 | -1.69E-46 |
| MS.gene050670 | MS.gene91314 | 0.858149 | 1.00E-62 | -1.69E-46 |
| MS.gene050686 | MS.gene91314 | 0.82451 | 7.76E-54 | -1.69E-46 |
| MS.gene050747 | MS.gene91314 | 0.84228 | 2.85E-58 | -1.69E-46 |
| MS.gene050767 | MS.gene91314 | 0.814624 | 1.40E-51 | -1.69E-46 |
| MS.gene050770 | MS.gene91314 | 0.820124 | 8.09E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene91314 | 0.858413 | 8.38E-63 | -1.69E-46 |
| MS.gene05080 | MS.gene91314 | 0.802971 | 4.36E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene91314 | 0.833884 | 4.13E-56 | -1.69E-46 |
| MS.gene05101 | MS.gene91314 | 0.83007 | 3.61E-55 | -1.69E-46 |
| MS.gene05105 | MS.gene91314 | 0.866984 | 1.91E-65 | -1.69E-46 |
| MS.gene051113 | MS.gene91314 | -0.822431 | 2.38E-53 | -1.69E-46 |
| MS.gene051167 | MS.gene91314 | -0.80705 | 6.11E-50 | -1.69E-46 |
| MS.gene051387 | MS.gene91314 | 0.881868 | 1.68E-70 | -1.69E-46 |
| MS.gene051582 | MS.gene91314 | 0.809757 | 1.62E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene91314 | 0.864576 | 1.10E-64 | -1.69E-46 |
| MS.gene051692 | MS.gene91314 | 0.838974 | 2.09E-57 | -1.69E-46 |
| MS.gene051694 | MS.gene91314 | 0.849127 | 3.95E-60 | -1.69E-46 |
| MS.gene051810 | MS.gene91314 | 0.80623 | 9.10E-50 | -1.69E-46 |
| MS.gene051858 | MS.gene91314 | 0.853281 | 2.65E-61 | -1.69E-46 |
| MS.gene051877 | MS.gene91314 | 0.851118 | 1.09E-60 | -1.69E-46 |
| MS.gene052078 | MS.gene91314 | 0.802465 | 5.54E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene91314 | 0.81391 | 2.02E-51 | -1.69E-46 |
| MS.gene052253 | MS.gene91314 | 0.807712 | 4.42E-50 | -1.69E-46 |
| MS.gene052271 | MS.gene91314 | 0.834366 | 3.12E-56 | -1.69E-46 |
| MS.gene052290 | MS.gene91314 | 0.805004 | 1.65E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene91314 | 0.846929 | 1.59E-59 | -1.69E-46 |
| MS.gene052322 | MS.gene91314 | 0.824828 | 6.53E-54 | -1.69E-46 |
| MS.gene052326 | MS.gene91314 | 0.807632 | 4.60E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene91314 | 0.878336 | 3.05E-69 | -1.69E-46 |
| MS.gene052421 | MS.gene91314 | 0.869765 | 2.42E-66 | -1.69E-46 |
| MS.gene052481 | MS.gene91314 | 0.854656 | 1.06E-61 | -1.69E-46 |
| MS.gene052484 | MS.gene91314 | 0.867532 | 1.28E-65 | -1.69E-46 |
| MS.gene052485 | MS.gene91314 | 0.854475 | 1.20E-61 | -1.69E-46 |
| MS.gene052501 | MS.gene91314 | 0.828463 | 8.87E-55 | -1.69E-46 |
| MS.gene052503 | MS.gene91314 | 0.806308 | 8.76E-50 | -1.69E-46 |
| MS.gene052505 | MS.gene91314 | 0.834978 | 2.19E-56 | -1.69E-46 |
| MS.gene052615 | MS.gene91314 | 0.875297 | 3.44E-68 | -1.69E-46 |
| MS.gene052982 | MS.gene91314 | 0.831334 | 1.77E-55 | -1.69E-46 |
| MS.gene053009 | MS.gene91314 | 0.801007 | 1.10E-48 | -1.69E-46 |
| MS.gene053103 | MS.gene91314 | 0.862451 | 5.02E-64 | -1.69E-46 |
| MS.gene053104 | MS.gene91314 | 0.866909 | 2.02E-65 | -1.69E-46 |
| MS.gene053107 | MS.gene91314 | 0.811968 | 5.37E-51 | -1.69E-46 |
| MS.gene053207 | MS.gene91314 | 0.849299 | 3.53E-60 | -1.69E-46 |
| MS.gene053209 | MS.gene91314 | 0.814231 | 1.71E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene91314 | 0.858973 | 5.70E-63 | -1.69E-46 |
| MS.gene053286 | MS.gene91314 | 0.846238 | 2.46E-59 | -1.69E-46 |
| MS.gene053322 | MS.gene91314 | 0.883676 | 3.67E-71 | -1.69E-46 |
| MS.gene053436 | MS.gene91314 | 0.805059 | 1.60E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene91314 | 0.814558 | 1.45E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene91314 | 0.841355 | 5.00E-58 | -1.69E-46 |
| MS.gene053579 | MS.gene91314 | 0.805951 | 1.04E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene91314 | 0.857908 | 1.18E-62 | -1.69E-46 |
| MS.gene053758 | MS.gene91314 | 0.813094 | 3.05E-51 | -1.69E-46 |
| MS.gene053813 | MS.gene91314 | 0.840188 | 1.01E-57 | -1.69E-46 |
| MS.gene053824 | MS.gene91314 | 0.801973 | 6.99E-49 | -1.69E-46 |
| MS.gene053915 | MS.gene91314 | 0.842085 | 3.21E-58 | -1.69E-46 |
| MS.gene053916 | MS.gene91314 | 0.812473 | 4.17E-51 | -1.69E-46 |
| MS.gene054003 | MS.gene91314 | 0.820365 | 7.13E-53 | -1.69E-46 |
| MS.gene054376 | MS.gene91314 | 0.808282 | 3.34E-50 | -1.69E-46 |
| MS.gene054408 | MS.gene91314 | 0.813703 | 2.24E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene91314 | 0.818184 | 2.24E-52 | -1.69E-46 |
| MS.gene054600 | MS.gene91314 | 0.818859 | 1.57E-52 | -1.69E-46 |
| MS.gene054642 | MS.gene91314 | 0.850066 | 2.16E-60 | -1.69E-46 |
| MS.gene054802 | MS.gene91314 | 0.840447 | 8.65E-58 | -1.69E-46 |
| MS.gene054803 | MS.gene91314 | 0.835876 | 1.30E-56 | -1.69E-46 |
| MS.gene054804 | MS.gene91314 | 0.839792 | 1.28E-57 | -1.69E-46 |
| MS.gene054927 | MS.gene91314 | 0.837523 | 4.94E-57 | -1.69E-46 |
| MS.gene054955 | MS.gene91314 | 0.800023 | 1.75E-48 | -1.69E-46 |
| MS.gene05505 | MS.gene91314 | 0.876883 | 9.80E-69 | -1.69E-46 |
| MS.gene055116 | MS.gene91314 | 0.817912 | 2.58E-52 | -1.69E-46 |
| MS.gene055206 | MS.gene91314 | 0.873023 | 2.03E-67 | -1.69E-46 |
| MS.gene055277 | MS.gene91314 | 0.849436 | 3.24E-60 | -1.69E-46 |
| MS.gene055289 | MS.gene91314 | 0.834483 | 2.92E-56 | -1.69E-46 |
| MS.gene055362 | MS.gene91314 | 0.810779 | 9.73E-51 | -1.69E-46 |
| MS.gene055397 | MS.gene91314 | 0.808067 | 3.72E-50 | -1.69E-46 |
| MS.gene055412 | MS.gene91314 | 0.847011 | 1.51E-59 | -1.69E-46 |
| MS.gene055428 | MS.gene91314 | 0.805615 | 1.23E-49 | -1.69E-46 |
| MS.gene055486 | MS.gene91314 | 0.85678 | 2.55E-62 | -1.69E-46 |
| MS.gene055499 | MS.gene91314 | 0.851094 | 1.11E-60 | -1.69E-46 |
| MS.gene055502 | MS.gene91314 | 0.843671 | 1.21E-58 | -1.69E-46 |
| MS.gene055577 | MS.gene91314 | 0.81345 | 2.54E-51 | -1.69E-46 |
| MS.gene055636 | MS.gene91314 | 0.815302 | 9.91E-52 | -1.69E-46 |
| MS.gene055638 | MS.gene91314 | 0.803344 | 3.65E-49 | -1.69E-46 |
| MS.gene055647 | MS.gene91314 | 0.852223 | 5.32E-61 | -1.69E-46 |
| MS.gene055722 | MS.gene91314 | 0.849775 | 2.60E-60 | -1.69E-46 |
| MS.gene05592 | MS.gene91314 | 0.872492 | 3.05E-67 | -1.69E-46 |
| MS.gene055941 | MS.gene91314 | 0.839441 | 1.58E-57 | -1.69E-46 |
| MS.gene056083 | MS.gene91314 | 0.811741 | 6.02E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene91314 | 0.830161 | 3.43E-55 | -1.69E-46 |
| MS.gene056374 | MS.gene91314 | 0.837501 | 5.01E-57 | -1.69E-46 |
| MS.gene056407 | MS.gene91314 | 0.831787 | 1.37E-55 | -1.69E-46 |
| MS.gene056410 | MS.gene91314 | 0.832193 | 1.09E-55 | -1.69E-46 |
| MS.gene056422 | MS.gene91314 | 0.821812 | 3.31E-53 | -1.69E-46 |
| MS.gene056448 | MS.gene91314 | 0.843291 | 1.53E-58 | -1.69E-46 |
| MS.gene056452 | MS.gene91314 | 0.813713 | 2.23E-51 | -1.69E-46 |
| MS.gene056487 | MS.gene91314 | 0.801463 | 8.90E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene91314 | 0.848954 | 4.41E-60 | -1.69E-46 |
| MS.gene056549 | MS.gene91314 | 0.800875 | 1.17E-48 | -1.69E-46 |
| MS.gene056609 | MS.gene91314 | 0.809476 | 1.86E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene91314 | 0.823495 | 1.34E-53 | -1.69E-46 |
| MS.gene056796 | MS.gene91314 | 0.810578 | 1.08E-50 | -1.69E-46 |
| MS.gene056942 | MS.gene91314 | 0.832412 | 9.60E-56 | -1.69E-46 |
| MS.gene057011 | MS.gene91314 | 0.881791 | 1.79E-70 | -1.69E-46 |
| MS.gene057048 | MS.gene91314 | 0.808569 | 2.90E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene91314 | 0.839979 | 1.15E-57 | -1.69E-46 |
| MS.gene057123 | MS.gene91314 | 0.830047 | 3.66E-55 | -1.69E-46 |
| MS.gene057124 | MS.gene91314 | 0.827209 | 1.77E-54 | -1.69E-46 |
| MS.gene057129 | MS.gene91314 | 0.872105 | 4.11E-67 | -1.69E-46 |
| MS.gene057146 | MS.gene91314 | 0.900088 | 1.04E-77 | -1.69E-46 |
| MS.gene057285 | MS.gene91314 | 0.831308 | 1.80E-55 | -1.69E-46 |
| MS.gene057331 | MS.gene91314 | 0.820462 | 6.77E-53 | -1.69E-46 |
| MS.gene05735 | MS.gene91314 | 0.808428 | 3.11E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene91314 | 0.879708 | 9.99E-70 | -1.69E-46 |
| MS.gene057478 | MS.gene91314 | -0.821869 | 3.21E-53 | -1.69E-46 |
| MS.gene057749 | MS.gene91314 | 0.828407 | 9.15E-55 | -1.69E-46 |
| MS.gene057823 | MS.gene91314 | 0.836333 | 9.95E-57 | -1.69E-46 |
| MS.gene057845 | MS.gene91314 | 0.817827 | 2.69E-52 | -1.69E-46 |
| MS.gene057856 | MS.gene91314 | 0.81902 | 1.45E-52 | -1.69E-46 |
| MS.gene057926 | MS.gene91314 | 0.812249 | 4.66E-51 | -1.69E-46 |
| MS.gene058006 | MS.gene91314 | 0.840295 | 9.48E-58 | -1.69E-46 |
| MS.gene058007 | MS.gene91314 | 0.805537 | 1.27E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene91314 | 0.850699 | 1.43E-60 | -1.69E-46 |
| MS.gene058130 | MS.gene91314 | 0.838699 | 2.46E-57 | -1.69E-46 |
| MS.gene058233 | MS.gene91314 | 0.828118 | 1.07E-54 | -1.69E-46 |
| MS.gene058293 | MS.gene91314 | 0.832733 | 7.99E-56 | -1.69E-46 |
| MS.gene058323 | MS.gene91314 | 0.833131 | 6.36E-56 | -1.69E-46 |
| MS.gene058376 | MS.gene91314 | 0.822696 | 2.06E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene91314 | 0.825347 | 4.93E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene91314 | 0.847954 | 8.34E-60 | -1.69E-46 |
| MS.gene058544 | MS.gene91314 | 0.828398 | 9.19E-55 | -1.69E-46 |
| MS.gene058660 | MS.gene91314 | 0.87535 | 3.30E-68 | -1.69E-46 |
| MS.gene058773 | MS.gene91314 | 0.801017 | 1.10E-48 | -1.69E-46 |
| MS.gene05883 | MS.gene91314 | 0.845268 | 4.52E-59 | -1.69E-46 |
| MS.gene058840 | MS.gene91314 | -0.81029 | 1.24E-50 | -1.69E-46 |
| MS.gene058928 | MS.gene91314 | 0.825252 | 5.19E-54 | -1.69E-46 |
| MS.gene059023 | MS.gene91314 | 0.804803 | 1.81E-49 | -1.69E-46 |
| MS.gene059029 | MS.gene91314 | 0.838826 | 2.28E-57 | -1.69E-46 |
| MS.gene05907 | MS.gene91314 | 0.810573 | 1.08E-50 | -1.69E-46 |
| MS.gene059141 | MS.gene91314 | 0.821858 | 3.23E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene91314 | 0.855986 | 4.37E-62 | -1.69E-46 |
| MS.gene059366 | MS.gene91314 | 0.801396 | 9.19E-49 | -1.69E-46 |
| MS.gene059368 | MS.gene91314 | 0.820176 | 7.88E-53 | -1.69E-46 |
| MS.gene059420 | MS.gene91314 | 0.804062 | 2.59E-49 | -1.69E-46 |
| MS.gene059455 | MS.gene91314 | 0.831366 | 1.74E-55 | -1.69E-46 |
| MS.gene059536 | MS.gene91314 | 0.884288 | 2.18E-71 | -1.69E-46 |
| MS.gene059597 | MS.gene91314 | 0.803249 | 3.81E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene91314 | 0.846987 | 1.54E-59 | -1.69E-46 |
| MS.gene059677 | MS.gene91314 | 0.807665 | 4.52E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene91314 | 0.866764 | 2.25E-65 | -1.69E-46 |
| MS.gene059692 | MS.gene91314 | 0.849479 | 3.15E-60 | -1.69E-46 |
| MS.gene059695 | MS.gene91314 | 0.851236 | 1.01E-60 | -1.69E-46 |
| MS.gene059711 | MS.gene91314 | 0.835981 | 1.22E-56 | -1.69E-46 |
| MS.gene059718 | MS.gene91314 | 0.849126 | 3.95E-60 | -1.69E-46 |
| MS.gene059801 | MS.gene91314 | 0.80499 | 1.66E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene91314 | 0.856911 | 2.34E-62 | -1.69E-46 |
| MS.gene059960 | MS.gene91314 | 0.860446 | 2.05E-63 | -1.69E-46 |
| MS.gene060193 | MS.gene91314 | 0.800505 | 1.40E-48 | -1.69E-46 |
| MS.gene060403 | MS.gene91314 | 0.846079 | 2.72E-59 | -1.69E-46 |
| MS.gene060482 | MS.gene91314 | 0.820369 | 7.11E-53 | -1.69E-46 |
| MS.gene060804 | MS.gene91314 | 0.883243 | 5.29E-71 | -1.69E-46 |
| MS.gene060818 | MS.gene91314 | 0.869156 | 3.82E-66 | -1.69E-46 |
| MS.gene060835 | MS.gene91314 | 0.837374 | 5.40E-57 | -1.69E-46 |
| MS.gene060837 | MS.gene91314 | 0.857795 | 1.28E-62 | -1.69E-46 |
| MS.gene06092 | MS.gene91314 | 0.873974 | 9.70E-68 | -1.69E-46 |
| MS.gene061041 | MS.gene91314 | 0.838379 | 2.98E-57 | -1.69E-46 |
| MS.gene061051 | MS.gene91314 | -0.805272 | 1.45E-49 | -1.69E-46 |
| MS.gene061134 | MS.gene91314 | 0.82781 | 1.27E-54 | -1.69E-46 |
| MS.gene061150 | MS.gene91314 | 0.824688 | 7.05E-54 | -1.69E-46 |
| MS.gene061200 | MS.gene91314 | 0.873528 | 1.37E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09661 | MS.gene91314 | PPI |
| MS.gene91314 | MS.gene059677 | PPI |
| MS.gene015317 | MS.gene91314 | PPI |
| MS.gene91314 | MS.gene21474 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91314.t1 | MTR_1g106190 | 97.021 | 235 | 7 | 0 | 1 | 235 | 1 | 235 | 2.04e-174 | 479 |
| MS.gene91314.t1 | MTR_3g111580 | 32.143 | 168 | 98 | 7 | 1 | 156 | 44 | 207 | 4.00e-16 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91314.t1 | AT1G04640 | 74.043 | 235 | 61 | 0 | 1 | 235 | 1 | 235 | 1.42e-132 | 373 |
| MS.gene91314.t1 | AT1G04640 | 74.043 | 235 | 61 | 0 | 1 | 235 | 1 | 235 | 1.42e-132 | 373 |
| MS.gene91314.t1 | AT1G47578 | 35.323 | 201 | 117 | 4 | 23 | 214 | 70 | 266 | 5.43e-34 | 123 |
| MS.gene91314.t1 | AT4G31050 | 35.047 | 214 | 122 | 6 | 14 | 214 | 54 | 263 | 5.95e-34 | 123 |
Find 56 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCCTTGAGGTATGGAAAA+TGG | 0.246851 | 1.3:+72921239 | MS.gene91314:CDS |
| AATGGGAGTCGTCAACTATT+TGG | 0.263377 | 1.3:+72921257 | MS.gene91314:CDS |
| CCTGGACGGAAGTGCGAGAC+TGG | 0.289747 | 1.3:+72921612 | MS.gene91314:CDS |
| ATCCTGATTTAAACTACTTT+AGG | 0.329725 | 1.3:+72921721 | MS.gene91314:CDS |
| ATTAATCCCTCAGTCAGAAT+TGG | 0.351556 | 1.3:+72921404 | MS.gene91314:CDS |
| GGAGGAGACATTACATTTCA+TGG | 0.377047 | 1.3:+72921462 | MS.gene91314:CDS |
| ATTGAACTGGCAGGTCTATA+CGG | 0.398561 | 1.3:+72921576 | MS.gene91314:CDS |
| TGCCTAAAGTAGTTTAAATC+AGG | 0.405093 | 1.3:-72921723 | None:intergenic |
| GTGTCCCGGAGCGATATAAT+AGG | 0.424169 | 1.3:-72921507 | None:intergenic |
| TTGGTTATGATAACCTGGTT+TGG | 0.424805 | 1.3:+72921865 | MS.gene91314:CDS |
| TGAGTTAACTATGATTGAAC+TGG | 0.440439 | 1.3:+72921563 | MS.gene91314:CDS |
| CTCTTGTATTATTTCTTCTG+CGG | 0.453281 | 1.3:-72921814 | None:intergenic |
| ACCCTTGAGGTATGGAAAAT+GGG | 0.459093 | 1.3:+72921240 | MS.gene91314:CDS |
| TCGCTCCGGGACACGGGACT+TGG | 0.469720 | 1.3:+72921516 | MS.gene91314:CDS |
| GGAAGTGCGAGACTGGGGTG+TGG | 0.469895 | 1.3:+72921619 | MS.gene91314:CDS |
| CTTTGCGAACCCTTGAGGTA+TGG | 0.471055 | 1.3:+72921232 | MS.gene91314:CDS |
| AGAAATAATACAAGAGCAGT+TGG | 0.475927 | 1.3:+72921821 | MS.gene91314:CDS |
| TCGAATGCAATCACTTCTCA+TGG | 0.484306 | 1.3:+72921681 | MS.gene91314:CDS |
| AGATAGGTGCAATCGGTGTT+CGG | 0.488844 | 1.3:+72921655 | MS.gene91314:CDS |
| TATATCCTATTATATCGCTC+CGG | 0.489442 | 1.3:+72921502 | MS.gene91314:CDS |
| ACTGCAAGAAAAGCTAGTCT+TGG | 0.489810 | 1.3:+72921290 | MS.gene91314:CDS |
| TATTATATCGCTCCGGGACA+CGG | 0.491774 | 1.3:+72921509 | MS.gene91314:CDS |
| CAGTCAGAATTGGAACAGAT+TGG | 0.505622 | 1.3:+72921414 | MS.gene91314:CDS |
| TACGGTGTGAAAGCTTGTCC+TGG | 0.514005 | 1.3:+72921594 | MS.gene91314:CDS |
| ATATCCTATTATATCGCTCC+GGG | 0.515465 | 1.3:+72921503 | MS.gene91314:CDS |
| TGCGAGACTGGGGTGTGGGT+TGG | 0.517715 | 1.3:+72921624 | MS.gene91314:CDS |
| CGATATAATAGGATATAAAA+CGG | 0.517995 | 1.3:-72921496 | None:intergenic |
| CCAGTCTCGCACTTCCGTCC+AGG | 0.521959 | 1.3:-72921612 | None:intergenic |
| TTGCCAACTGTGTATGTAGG+AGG | 0.525301 | 1.3:-72921360 | None:intergenic |
| CTGGACGGAAGTGCGAGACT+GGG | 0.527482 | 1.3:+72921613 | MS.gene91314:CDS |
| TAGCACCAAGTCCCGTGTCC+CGG | 0.536717 | 1.3:-72921521 | None:intergenic |
| TCTTGTATTATTTCTTCTGC+GGG | 0.538283 | 1.3:-72921813 | None:intergenic |
| TGGGTTGGAGAAAGAAAGAT+AGG | 0.538417 | 1.3:+72921639 | MS.gene91314:CDS |
| TGCAATCACTTCTCATGGGA+TGG | 0.538484 | 1.3:+72921686 | MS.gene91314:CDS |
| ATTATATCGCTCCGGGACAC+GGG | 0.540311 | 1.3:+72921510 | MS.gene91314:CDS |
| GTATTATTTCTTCTGCGGGA+AGG | 0.543520 | 1.3:-72921809 | None:intergenic |
| TTATGATAACCTGGTTTGGA+AGG | 0.544272 | 1.3:+72921869 | MS.gene91314:CDS |
| TAATAGGATATAAAACGGCT+TGG | 0.546253 | 1.3:-72921491 | None:intergenic |
| TGATAACCTGGTTTGGAAGG+AGG | 0.556596 | 1.3:+72921872 | MS.gene91314:CDS |
| TCTGTTCCAATTCTGACTGA+GGG | 0.560843 | 1.3:-72921410 | None:intergenic |
| GAAGTGCGAGACTGGGGTGT+GGG | 0.568019 | 1.3:+72921620 | MS.gene91314:CDS |
| AAGCATCCTCCTTCCAAACC+AGG | 0.571828 | 1.3:-72921878 | None:intergenic |
| GAAAGAAAGATAGGTGCAAT+CGG | 0.577631 | 1.3:+72921648 | MS.gene91314:CDS |
| GGATATAAAACGGCTTGGTG+TGG | 0.578369 | 1.3:-72921486 | None:intergenic |
| ATCTGTTCCAATTCTGACTG+AGG | 0.581218 | 1.3:-72921411 | None:intergenic |
| CACCCTCCTACATACACAGT+TGG | 0.584308 | 1.3:+72921357 | MS.gene91314:CDS |
| TTAACTATGATTGAACTGGC+AGG | 0.588243 | 1.3:+72921567 | MS.gene91314:CDS |
| TGCCAACTGTGTATGTAGGA+GGG | 0.592743 | 1.3:-72921359 | None:intergenic |
| GAGGGCTTTGCGAACCCTTG+AGG | 0.595771 | 1.3:+72921227 | MS.gene91314:CDS |
| TGGACGGAAGTGCGAGACTG+GGG | 0.596502 | 1.3:+72921614 | MS.gene91314:CDS |
| CGAATGCAATCACTTCTCAT+GGG | 0.616033 | 1.3:+72921682 | MS.gene91314:CDS |
| GTGTGAAAGCTTGTCCTGGA+CGG | 0.630714 | 1.3:+72921598 | MS.gene91314:CDS |
| TCTTTATCAGCAATTCCACA+CGG | 0.675103 | 1.3:-72921753 | None:intergenic |
| TTTAGGCACATTGTACCGTG+TGG | 0.676153 | 1.3:+72921738 | MS.gene91314:CDS |
| CTTCACTACACACAACGTGG+AGG | 0.719716 | 1.3:+72921444 | MS.gene91314:CDS |
| GAGCTTCACTACACACAACG+TGG | 0.727037 | 1.3:+72921441 | MS.gene91314:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CGATATAATAGGATATAAAA+CGG | - | chr1.3:72921499-72921518 | None:intergenic | 20.0% |
| ! | ATCCTGATTTAAACTACTTT+AGG | + | chr1.3:72921721-72921740 | MS.gene91314:CDS | 25.0% |
| !! | TCATGTTTTGCAAGAATTTT+TGG | + | chr1.3:72921846-72921865 | MS.gene91314:CDS | 25.0% |
| !!! | AATTTTTGGTTATGATAACC+TGG | + | chr1.3:72921860-72921879 | MS.gene91314:CDS | 25.0% |
| AGAAATAATACAAGAGCAGT+TGG | + | chr1.3:72921821-72921840 | MS.gene91314:CDS | 30.0% | |
| TAATAGGATATAAAACGGCT+TGG | - | chr1.3:72921494-72921513 | None:intergenic | 30.0% | |
| TATATCCTATTATATCGCTC+CGG | + | chr1.3:72921502-72921521 | MS.gene91314:CDS | 30.0% | |
| TGAGTTAACTATGATTGAAC+TGG | + | chr1.3:72921563-72921582 | MS.gene91314:CDS | 30.0% | |
| TGCCTAAAGTAGTTTAAATC+AGG | - | chr1.3:72921726-72921745 | None:intergenic | 30.0% | |
| ! | CTCTTGTATTATTTCTTCTG+CGG | - | chr1.3:72921817-72921836 | None:intergenic | 30.0% |
| ! | TCTTGTATTATTTCTTCTGC+GGG | - | chr1.3:72921816-72921835 | None:intergenic | 30.0% |
| ATATCCTATTATATCGCTCC+GGG | + | chr1.3:72921503-72921522 | MS.gene91314:CDS | 35.0% | |
| ATTAATCCCTCAGTCAGAAT+TGG | + | chr1.3:72921404-72921423 | MS.gene91314:CDS | 35.0% | |
| GAAAGAAAGATAGGTGCAAT+CGG | + | chr1.3:72921648-72921667 | MS.gene91314:CDS | 35.0% | |
| TCTTTATCAGCAATTCCACA+CGG | - | chr1.3:72921756-72921775 | None:intergenic | 35.0% | |
| TTAACTATGATTGAACTGGC+AGG | + | chr1.3:72921567-72921586 | MS.gene91314:CDS | 35.0% | |
| TTGGTTATGATAACCTGGTT+TGG | + | chr1.3:72921865-72921884 | MS.gene91314:CDS | 35.0% | |
| !! | TTATGATAACCTGGTTTGGA+AGG | + | chr1.3:72921869-72921888 | MS.gene91314:CDS | 35.0% |
| AACCCTTGAGGTATGGAAAA+TGG | + | chr1.3:72921239-72921258 | MS.gene91314:CDS | 40.0% | |
| AATGGGAGTCGTCAACTATT+TGG | + | chr1.3:72921257-72921276 | MS.gene91314:CDS | 40.0% | |
| ACCCTTGAGGTATGGAAAAT+GGG | + | chr1.3:72921240-72921259 | MS.gene91314:CDS | 40.0% | |
| ATCTGTTCCAATTCTGACTG+AGG | - | chr1.3:72921414-72921433 | None:intergenic | 40.0% | |
| ATTGAACTGGCAGGTCTATA+CGG | + | chr1.3:72921576-72921595 | MS.gene91314:CDS | 40.0% | |
| CAGTCAGAATTGGAACAGAT+TGG | + | chr1.3:72921414-72921433 | MS.gene91314:CDS | 40.0% | |
| CGAATGCAATCACTTCTCAT+GGG | + | chr1.3:72921682-72921701 | MS.gene91314:CDS | 40.0% | |
| GGAGGAGACATTACATTTCA+TGG | + | chr1.3:72921462-72921481 | MS.gene91314:CDS | 40.0% | |
| TCGAATGCAATCACTTCTCA+TGG | + | chr1.3:72921681-72921700 | MS.gene91314:CDS | 40.0% | |
| TCTGTTCCAATTCTGACTGA+GGG | - | chr1.3:72921413-72921432 | None:intergenic | 40.0% | |
| ! | ACTGCAAGAAAAGCTAGTCT+TGG | + | chr1.3:72921290-72921309 | MS.gene91314:CDS | 40.0% |
| ! | CTTTTGCCAACTGTGTATGT+AGG | - | chr1.3:72921366-72921385 | None:intergenic | 40.0% |
| ! | GTATTATTTCTTCTGCGGGA+AGG | - | chr1.3:72921812-72921831 | None:intergenic | 40.0% |
| ! | TCCCATTTTCCATACCTCAA+GGG | - | chr1.3:72921244-72921263 | None:intergenic | 40.0% |
| ! | TGGGTTGGAGAAAGAAAGAT+AGG | + | chr1.3:72921639-72921658 | MS.gene91314:CDS | 40.0% |
| TATTATATCGCTCCGGGACA+CGG | + | chr1.3:72921509-72921528 | MS.gene91314:CDS | 45.0% | |
| TGCAATCACTTCTCATGGGA+TGG | + | chr1.3:72921686-72921705 | MS.gene91314:CDS | 45.0% | |
| TGCCAACTGTGTATGTAGGA+GGG | - | chr1.3:72921362-72921381 | None:intergenic | 45.0% | |
| TTGCCAACTGTGTATGTAGG+AGG | - | chr1.3:72921363-72921382 | None:intergenic | 45.0% | |
| TTTAGGCACATTGTACCGTG+TGG | + | chr1.3:72921738-72921757 | MS.gene91314:CDS | 45.0% | |
| ! | AGATAGGTGCAATCGGTGTT+CGG | + | chr1.3:72921655-72921674 | MS.gene91314:CDS | 45.0% |
| ! | CTCCCATTTTCCATACCTCA+AGG | - | chr1.3:72921245-72921264 | None:intergenic | 45.0% |
| !! | GGATATAAAACGGCTTGGTG+TGG | - | chr1.3:72921489-72921508 | None:intergenic | 45.0% |
| !! | TGATAACCTGGTTTGGAAGG+AGG | + | chr1.3:72921872-72921891 | MS.gene91314:CDS | 45.0% |
| AAGCATCCTCCTTCCAAACC+AGG | - | chr1.3:72921881-72921900 | None:intergenic | 50.0% | |
| ATTATATCGCTCCGGGACAC+GGG | + | chr1.3:72921510-72921529 | MS.gene91314:CDS | 50.0% | |
| CACCCTCCTACATACACAGT+TGG | + | chr1.3:72921357-72921376 | MS.gene91314:CDS | 50.0% | |
| CTTCACTACACACAACGTGG+AGG | + | chr1.3:72921444-72921463 | MS.gene91314:CDS | 50.0% | |
| CTTTGCGAACCCTTGAGGTA+TGG | + | chr1.3:72921232-72921251 | MS.gene91314:CDS | 50.0% | |
| GAGCTTCACTACACACAACG+TGG | + | chr1.3:72921441-72921460 | MS.gene91314:CDS | 50.0% | |
| GTGTCCCGGAGCGATATAAT+AGG | - | chr1.3:72921510-72921529 | None:intergenic | 50.0% | |
| GTGTGAAAGCTTGTCCTGGA+CGG | + | chr1.3:72921598-72921617 | MS.gene91314:CDS | 50.0% | |
| TACGGTGTGAAAGCTTGTCC+TGG | + | chr1.3:72921594-72921613 | MS.gene91314:CDS | 50.0% | |
| GAAGTGCGAGACTGGGGTGT+GGG | + | chr1.3:72921620-72921639 | MS.gene91314:CDS | 60.0% | |
| GAGGGCTTTGCGAACCCTTG+AGG | + | chr1.3:72921227-72921246 | MS.gene91314:CDS | 60.0% | |
| TAGCACCAAGTCCCGTGTCC+CGG | - | chr1.3:72921524-72921543 | None:intergenic | 60.0% | |
| ! | CTGGACGGAAGTGCGAGACT+GGG | + | chr1.3:72921613-72921632 | MS.gene91314:CDS | 60.0% |
| ! | TGGACGGAAGTGCGAGACTG+GGG | + | chr1.3:72921614-72921633 | MS.gene91314:CDS | 60.0% |
| CCAGTCTCGCACTTCCGTCC+AGG | - | chr1.3:72921615-72921634 | None:intergenic | 65.0% | |
| TGCGAGACTGGGGTGTGGGT+TGG | + | chr1.3:72921624-72921643 | MS.gene91314:CDS | 65.0% | |
| ! | CCTGGACGGAAGTGCGAGAC+TGG | + | chr1.3:72921612-72921631 | MS.gene91314:CDS | 65.0% |
| ! | GGAAGTGCGAGACTGGGGTG+TGG | + | chr1.3:72921619-72921638 | MS.gene91314:CDS | 65.0% |
| TCGCTCCGGGACACGGGACT+TGG | + | chr1.3:72921516-72921535 | MS.gene91314:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 72921225 | 72921932 | 72921225 | ID=MS.gene91314 |
| chr1.3 | mRNA | 72921225 | 72921932 | 72921225 | ID=MS.gene91314.t1;Parent=MS.gene91314 |
| chr1.3 | exon | 72921225 | 72921932 | 72921225 | ID=MS.gene91314.t1.exon1;Parent=MS.gene91314.t1 |
| chr1.3 | CDS | 72921225 | 72921932 | 72921225 | ID=cds.MS.gene91314.t1;Parent=MS.gene91314.t1 |
| Gene Sequence |
| Protein sequence |
