AlfalfaGEDB | MS.gene44712

M. sativa cultivar XinJiangDaYe / MS.gene44712

KEGG: -
GO: -
PFAM: PF14226.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44712.t1	AFK38431.1	96	151	6	0	1	151	1	151	4.40E-81	310.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44712.t1	Q9FLV0	35.4	147	93	2	5	151	5	149	1.5e-21	104.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44712.t1	A0A396GTP8	96.0	151	6	0	1	151	1	151	3.2e-81	310.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene44712	-0.816975	4.19E-52	-1.69E-46
MS.gene049171	MS.gene44712	-0.805002	1.65E-49	-1.69E-46
MS.gene049222	MS.gene44712	-0.800796	1.22E-48	-1.69E-46
MS.gene049265	MS.gene44712	0.812298	4.55E-51	-1.69E-46
MS.gene04932	MS.gene44712	0.818875	1.56E-52	-1.69E-46
MS.gene049549	MS.gene44712	0.859599	3.70E-63	-1.69E-46
MS.gene049611	MS.gene44712	0.811335	7.37E-51	-1.69E-46
MS.gene049634	MS.gene44712	0.821678	3.55E-53	-1.69E-46
MS.gene050095	MS.gene44712	0.813271	2.79E-51	-1.69E-46
MS.gene050096	MS.gene44712	0.827216	1.77E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44712.t1	MTR_6g015950	67.105	152	49	1	1	151	1	152	2.05e-72	220
MS.gene44712.t1	MTR_7g016090	63.576	151	55	0	1	151	1	151	1.87e-70	215
MS.gene44712.t1	MTR_7g016090	63.576	151	55	0	1	151	3	153	1.98e-70	215
MS.gene44712.t1	MTR_7g016080	61.438	153	57	1	1	151	1	153	6.24e-66	204
MS.gene44712.t1	MTR_1g070135	42.208	154	85	2	1	151	1	153	9.40e-38	130
MS.gene44712.t1	MTR_1g070135	42.208	154	85	2	1	151	1	153	2.03e-37	130
MS.gene44712.t1	MTR_1g070120	38.961	154	90	2	1	151	1	153	1.37e-35	126
MS.gene44712.t1	MTR_1g070080	38.562	153	85	4	5	151	4	153	2.07e-28	107
MS.gene44712.t1	MTR_1g070085	38.571	140	83	1	15	151	13	152	4.57e-28	106
MS.gene44712.t1	MTR_1g070085	38.571	140	83	1	15	151	13	152	4.57e-28	106

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44712.t1	AT5G24530	35.099	151	96	2	1	151	1	149	4.08e-26	101
MS.gene44712.t1	AT4G10500	36.129	155	93	4	1	151	6	158	3.51e-22	90.9
MS.gene44712.t1	AT4G10490	36.184	152	92	3	4	151	6	156	9.77e-22	89.4
MS.gene44712.t1	AT5G07480	34.752	141	83	5	16	151	24	160	1.04e-19	84.0
MS.gene44712.t1	AT5G08640	32.432	148	98	2	6	151	9	156	2.81e-18	80.1
MS.gene44712.t1	AT5G08640	32.432	148	98	2	6	151	9	156	2.81e-18	80.1
MS.gene44712.t1	AT2G44800	32.215	149	80	4	16	151	27	167	6.22e-18	79.3
MS.gene44712.t1	AT5G63590	39.167	120	68	3	34	150	9	126	1.06e-15	72.8
MS.gene44712.t1	AT3G60290	34.266	143	85	5	16	151	27	167	1.78e-15	72.4
MS.gene44712.t1	AT5G63580	32.231	121	75	3	34	151	14	130	2.12e-15	70.9

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Find 38 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATAAGTGAAAGTTCA+AGG	0.463084	7.2:+81508744	MS.gene44712:CDS
AAAGATAAGTGAAAGTTCAA+GGG	0.568605	7.2:+81508745	MS.gene44712:CDS
AACTCCATGAATTCACCTGA+AGG	0.620817	7.2:-81508863	None:intergenic
AAGTCGTGAGATTAATAACA+AGG	0.641193	7.2:+81508796	MS.gene44712:CDS
ACCGGAAAGTAGACCCGGCA+CGG	0.589489	7.2:+81508015	MS.gene44712:CDS
AGAGTCTACAACTTCCATTA+GGG	0.490244	7.2:-81508769	None:intergenic
AGGCATATTTGTCCACCTTC+AGG	0.341469	7.2:+81508848	MS.gene44712:CDS
AGTATTGGAGGGACACATTA+AGG	0.317719	7.2:+81508828	MS.gene44712:CDS
ATAACATGCTTGTCTCTAGC+TGG	0.495915	7.2:+81507951	MS.gene44712:CDS
ATAATCCCGGTGGTGGATCT+TGG	0.440681	7.2:+81508058	MS.gene44712:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTCGTGAGATTAATAACA+AGG	+	chr7.2:81508796-81508815	MS.gene44712:CDS	30.0%
CAAAATCTTAAGTACAAACC+TGG	-	chr7.2:81508147-81508166	None:intergenic	30.0%
GAGTGAAATATTCAAACGTA+AGG	-	chr7.2:81508174-81508193	None:intergenic	30.0%
TGATTGAACTTCAAATTTCC+AGG	+	chr7.2:81508443-81508462	MS.gene44712:intron	30.0%
AGAGTCTACAACTTCCATTA+GGG	-	chr7.2:81508772-81508791	None:intergenic	35.0%
TAGAGTCTACAACTTCCATT+AGG	-	chr7.2:81508773-81508792	None:intergenic	35.0%
AACTCCATGAATTCACCTGA+AGG	-	chr7.2:81508866-81508885	None:intergenic	40.0%
ATAACATGCTTGTCTCTAGC+TGG	+	chr7.2:81507951-81507970	MS.gene44712:CDS	40.0%
CACAAAAGCCTACAAGATAC+CGG	+	chr7.2:81508891-81508910	MS.gene44712:CDS	40.0%
TGTATCATCCATCAACTCCT+TGG	-	chr7.2:81508684-81508703	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	81507947	81508916	81507947	ID=MS.gene44712
chr7.2	mRNA	81507947	81508916	81507947	ID=MS.gene44712.t1;Parent=MS.gene44712
chr7.2	exon	81507947	81508147	81507947	ID=MS.gene44712.t1.exon1;Parent=MS.gene44712.t1
chr7.2	CDS	81507947	81508147	81507947	ID=cds.MS.gene44712.t1;Parent=MS.gene44712.t1
chr7.2	exon	81508662	81508916	81508662	ID=MS.gene44712.t1.exon2;Parent=MS.gene44712.t1
chr7.2	CDS	81508662	81508916	81508662	ID=cds.MS.gene44712.t1;Parent=MS.gene44712.t1

Gene Sequence

>MS.gene44712

ATGGATAACATGCTTGTCTCTAGCTGGTTTCATCTTCATTCAACTGTGCCTTTATCGTATGTGCAACCACCGGAAAGTAGACCCGGCACGGCGTCTGTGATTTCCGGCAAGATAATCCCGGTGGTGGATCTTGGTGGTCATGATCATGCTGAAACATTACTGCACGTTTTGAGAGCTTCTGAGGAGTATGGATTTTTCCAGGTTTGTACTTAAGATTTTGAAAACCTTACGTTTGAATATTTCACTCTATATGGTTTTAATTAGATTTTTTTTTTCTTTCTATTTTGTGTGTACAAATTAAAATTTTCCTATATACAAAAATTAAAAAATGTCCAGGTTGGTGTAAAATAAAATATATAAATAGATAAGTGTGTTCTAAATTGAGGTCCATAATTATAATTGTGACTAGAAATGATGATAAATTTCTCTCAGAAAAAATTAAAATAATTTTTTTTTGCTAATGAACTTTAATTAAGAAGAAAATTCTAGGGAATTTTGATTGAACTTCAAATTTCCAGGACCCTTTTTCTGTGATAATTAGAATTGAAACTTAAAATCAATATAAAAGATTTAGAAGTCTCTTCAATGATTTATTTTCATTAGGTTAATTTGTGTAATATATCAAGATTTAAATCGTAAGGAAAACTACAATTTTCAACCATATATATATGTTTGTCGTTATTTAATGTGAAAAACTTGTGGATTTATTTATAAGGTTGTTAACCATGGAGTTTCCAAGGAGTTGATGGATGATACAATGAACATTTTCAAGGAATTTCATGCCATGCCTGAATTAGAAAAGATAAGTGAAAGTTCAAGGGACCCTAATGGAAGTTGTAGACTCTATACAAGTCGTGAGATTAATAACAAGGATTTTGTTCAGTATTGGAGGGACACATTAAGGCATATTTGTCCACCTTCAGGTGAATTCATGGAGTTTTGGCCACAAAAGCCTACAAGATACCGGTAA

Protein sequence

>MS.gene44712.t1

MDNMLVSSWFHLHSTVPLSYVQPPESRPGTASVISGKIIPVVDLGGHDHAETLLHVLRASEEYGFFQVVNHGVSKELMDDTMNIFKEFHAMPELEKISESSRDPNGSCRLYTSREINNKDFVQYWRDTLRHICPPSGEFMEFWPQKPTRYR