Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67371.t1 | XP_013456067.1 | 88.4 | 303 | 32 | 1 | 1 | 300 | 1 | 303 | 3.30E-120 | 441.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67371.t1 | Q9LQQ0 | 66.1 | 236 | 70 | 5 | 72 | 300 | 157 | 389 | 1.9e-63 | 244.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67371.t1 | A0A072ULY3 | 88.4 | 303 | 32 | 1 | 1 | 300 | 1 | 303 | 2.4e-120 | 441.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene67371 | 0.821439 | 4.04E-53 | -1.69E-46 |
| MS.gene049488 | MS.gene67371 | -0.80354 | 3.32E-49 | -1.69E-46 |
| MS.gene049549 | MS.gene67371 | 0.830104 | 3.54E-55 | -1.69E-46 |
| MS.gene050133 | MS.gene67371 | 0.805567 | 1.25E-49 | -1.69E-46 |
| MS.gene050329 | MS.gene67371 | 0.807113 | 5.92E-50 | -1.69E-46 |
| MS.gene051131 | MS.gene67371 | 0.819514 | 1.12E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene67371 | -0.801155 | 1.03E-48 | -1.69E-46 |
| MS.gene051996 | MS.gene67371 | 0.853362 | 2.51E-61 | -1.69E-46 |
| MS.gene052011 | MS.gene67371 | 0.804248 | 2.37E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene67371 | 0.818899 | 1.54E-52 | -1.69E-46 |
| MS.gene052223 | MS.gene67371 | 0.860402 | 2.12E-63 | -1.69E-46 |
| MS.gene05240 | MS.gene67371 | 0.839766 | 1.30E-57 | -1.69E-46 |
| MS.gene052505 | MS.gene67371 | -0.803649 | 3.15E-49 | -1.69E-46 |
| MS.gene052706 | MS.gene67371 | 0.821423 | 4.07E-53 | -1.69E-46 |
| MS.gene053406 | MS.gene67371 | 0.826929 | 2.07E-54 | -1.69E-46 |
| MS.gene053873 | MS.gene67371 | -0.811534 | 6.67E-51 | -1.69E-46 |
| MS.gene054120 | MS.gene67371 | 0.805844 | 1.10E-49 | -1.69E-46 |
| MS.gene054138 | MS.gene67371 | 0.863212 | 2.93E-64 | -1.69E-46 |
| MS.gene054146 | MS.gene67371 | 0.813576 | 2.39E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene67371 | 0.814076 | 1.85E-51 | -1.69E-46 |
| MS.gene054277 | MS.gene67371 | 0.8471 | 1.43E-59 | -1.69E-46 |
| MS.gene054421 | MS.gene67371 | 0.803061 | 4.17E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene67371 | 0.893266 | 7.38E-75 | -1.69E-46 |
| MS.gene055215 | MS.gene67371 | 0.813428 | 2.57E-51 | -1.69E-46 |
| MS.gene055601 | MS.gene67371 | 0.808416 | 3.13E-50 | -1.69E-46 |
| MS.gene055629 | MS.gene67371 | -0.81773 | 2.83E-52 | -1.69E-46 |
| MS.gene056076 | MS.gene67371 | 0.819914 | 9.04E-53 | -1.69E-46 |
| MS.gene056330 | MS.gene67371 | 0.898864 | 3.49E-77 | -1.69E-46 |
| MS.gene056514 | MS.gene67371 | -0.810465 | 1.14E-50 | -1.69E-46 |
| MS.gene056590 | MS.gene67371 | 0.807393 | 5.17E-50 | -1.69E-46 |
| MS.gene056591 | MS.gene67371 | 0.804427 | 2.17E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene67371 | 0.828207 | 1.02E-54 | -1.69E-46 |
| MS.gene056688 | MS.gene67371 | 0.802511 | 5.42E-49 | -1.69E-46 |
| MS.gene056690 | MS.gene67371 | 0.810807 | 9.59E-51 | -1.69E-46 |
| MS.gene056691 | MS.gene67371 | 0.827693 | 1.36E-54 | -1.69E-46 |
| MS.gene056899 | MS.gene67371 | 0.808626 | 2.82E-50 | -1.69E-46 |
| MS.gene056920 | MS.gene67371 | 0.892917 | 1.02E-74 | -1.69E-46 |
| MS.gene056922 | MS.gene67371 | 0.876724 | 1.11E-68 | -1.69E-46 |
| MS.gene056923 | MS.gene67371 | 0.880503 | 5.20E-70 | -1.69E-46 |
| MS.gene056924 | MS.gene67371 | 0.893668 | 5.07E-75 | -1.69E-46 |
| MS.gene056925 | MS.gene67371 | 0.846188 | 2.54E-59 | -1.69E-46 |
| MS.gene057261 | MS.gene67371 | 0.825544 | 4.42E-54 | -1.69E-46 |
| MS.gene057544 | MS.gene67371 | 0.835404 | 1.71E-56 | -1.69E-46 |
| MS.gene057770 | MS.gene67371 | 0.802471 | 5.52E-49 | -1.69E-46 |
| MS.gene059039 | MS.gene67371 | 0.800722 | 1.26E-48 | -1.69E-46 |
| MS.gene059043 | MS.gene67371 | 0.819596 | 1.07E-52 | -1.69E-46 |
| MS.gene059328 | MS.gene67371 | 0.827933 | 1.19E-54 | -1.69E-46 |
| MS.gene059891 | MS.gene67371 | 0.811573 | 6.54E-51 | -1.69E-46 |
| MS.gene059892 | MS.gene67371 | 0.802669 | 5.03E-49 | -1.69E-46 |
| MS.gene059955 | MS.gene67371 | 0.817391 | 3.38E-52 | -1.69E-46 |
| MS.gene060087 | MS.gene67371 | 0.88643 | 3.44E-72 | -1.69E-46 |
| MS.gene060205 | MS.gene67371 | 0.820454 | 6.80E-53 | -1.69E-46 |
| MS.gene060578 | MS.gene67371 | 0.81809 | 2.35E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67371.t1 | MTR_4g062520 | 95.710 | 303 | 10 | 1 | 1 | 300 | 1 | 303 | 0.0 | 574 |
| MS.gene67371.t1 | MTR_4g062470 | 89.216 | 306 | 25 | 4 | 1 | 300 | 1 | 304 | 6.32e-158 | 442 |
| MS.gene67371.t1 | MTR_1g115510 | 43.214 | 280 | 140 | 9 | 37 | 300 | 77 | 353 | 8.90e-63 | 202 |
| MS.gene67371.t1 | MTR_7g021300 | 44.656 | 262 | 124 | 9 | 51 | 299 | 135 | 388 | 2.75e-61 | 199 |
| MS.gene67371.t1 | MTR_4g062460 | 40.625 | 224 | 125 | 4 | 79 | 298 | 38 | 257 | 1.25e-50 | 168 |
| MS.gene67371.t1 | MTR_1g046800 | 46.018 | 226 | 112 | 5 | 75 | 300 | 35 | 250 | 6.59e-50 | 166 |
| MS.gene67371.t1 | MTR_1g046500 | 46.725 | 229 | 106 | 7 | 75 | 300 | 35 | 250 | 9.11e-48 | 160 |
| MS.gene67371.t1 | MTR_1g046490 | 45.175 | 228 | 113 | 7 | 75 | 300 | 19 | 236 | 2.34e-45 | 154 |
| MS.gene67371.t1 | MTR_1g115515 | 33.937 | 221 | 102 | 9 | 63 | 274 | 24 | 209 | 5.75e-24 | 97.8 |
| MS.gene67371.t1 | MTR_7g093820 | 37.383 | 107 | 66 | 1 | 174 | 279 | 71 | 177 | 1.00e-11 | 63.2 |
| MS.gene67371.t1 | MTR_7g093850 | 37.383 | 107 | 66 | 1 | 174 | 279 | 71 | 177 | 1.08e-11 | 63.2 |
| MS.gene67371.t1 | MTR_7g093830 | 37.383 | 107 | 66 | 1 | 174 | 279 | 70 | 176 | 2.80e-11 | 62.0 |
| MS.gene67371.t1 | MTR_4g013310 | 33.613 | 119 | 68 | 4 | 184 | 300 | 87 | 196 | 3.76e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67371.t1 | AT1G07730 | 64.979 | 237 | 73 | 5 | 71 | 300 | 156 | 389 | 1.45e-88 | 270 |
| MS.gene67371.t1 | AT2G28670 | 65.823 | 237 | 69 | 5 | 73 | 300 | 203 | 436 | 3.42e-87 | 268 |
| MS.gene67371.t1 | AT2G28670 | 66.079 | 227 | 67 | 4 | 83 | 300 | 1 | 226 | 2.69e-86 | 258 |
| MS.gene67371.t1 | AT3G55230 | 40.328 | 305 | 160 | 8 | 14 | 300 | 3 | 303 | 1.38e-63 | 203 |
| MS.gene67371.t1 | AT2G39430 | 46.186 | 236 | 111 | 5 | 79 | 300 | 87 | 320 | 1.05e-61 | 198 |
| MS.gene67371.t1 | AT4G13580 | 41.532 | 248 | 121 | 8 | 59 | 300 | 15 | 244 | 1.65e-45 | 154 |
| MS.gene67371.t1 | AT3G24020 | 43.363 | 226 | 104 | 8 | 81 | 300 | 36 | 243 | 1.76e-43 | 149 |
| MS.gene67371.t1 | AT2G21100 | 34.677 | 124 | 73 | 4 | 155 | 275 | 49 | 167 | 2.08e-12 | 65.1 |
| MS.gene67371.t1 | AT2G21100 | 34.677 | 124 | 73 | 4 | 155 | 275 | 49 | 167 | 2.08e-12 | 65.1 |
Find 75 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGTTGTTGCGGCTGTTAT+CGG | 0.213458 | 4.1:+37450134 | None:intergenic |
| TGCTATTATTAAGACATTTC+CGG | 0.262574 | 4.1:-37449508 | MS.gene67371:CDS |
| GAAGATAGTCTCAGCTTCTT+TGG | 0.282557 | 4.1:-37449612 | MS.gene67371:CDS |
| TTGAGAGGCATAGTGGTAAA+AGG | 0.290005 | 4.1:+37450299 | None:intergenic |
| TCTCAAATCCATACTGCTTA+TGG | 0.330814 | 4.1:-37450282 | MS.gene67371:CDS |
| CAATCACAACTTGCAATCAT+TGG | 0.336329 | 4.1:-37449564 | MS.gene67371:CDS |
| TGGTTGTTGCGGCTGTTATC+GGG | 0.342275 | 4.1:+37450135 | None:intergenic |
| AACAATCTCCCTTTCCTAAC+AGG | 0.351923 | 4.1:-37449903 | MS.gene67371:CDS |
| TTGAAAGAGACCCTACTAAT+AGG | 0.352692 | 4.1:+37449422 | None:intergenic |
| CACTGCTCTTGCTGTTGGAT+TGG | 0.363738 | 4.1:+37450049 | None:intergenic |
| CTTGCAATCATTGGAGGAAC+TGG | 0.372185 | 4.1:-37449555 | MS.gene67371:CDS |
| TGTTTCCACTAAGTCCTGTT+AGG | 0.386199 | 4.1:+37449889 | None:intergenic |
| CCTTTCCTAACAGGACTTAG+TGG | 0.390262 | 4.1:-37449894 | MS.gene67371:CDS |
| GGAAAGTATGTGAATGCTAA+TGG | 0.401273 | 4.1:-37449534 | MS.gene67371:CDS |
| CCGGTCACTGCTCTTGCTGT+TGG | 0.404955 | 4.1:+37450044 | None:intergenic |
| AGTGGAAGGTTTGCGCCGTT+TGG | 0.405131 | 4.1:+37449975 | None:intergenic |
| TATCAATGCCATAAGCAGTA+TGG | 0.412453 | 4.1:+37450274 | None:intergenic |
| ACTGCAAAGTTTGAAGAGAA+TGG | 0.412582 | 4.1:-37449639 | MS.gene67371:CDS |
| CTACTTGAGCGTTGAGGGCG+GGG | 0.416154 | 4.1:+37450009 | None:intergenic |
| GATTCTGCTGAATCAACAAT+TGG | 0.416651 | 4.1:+37450185 | None:intergenic |
| GCTACTTGAGCGTTGAGGGC+GGG | 0.431031 | 4.1:+37450008 | None:intergenic |
| GAGTTGGGATCAGGATTAGT+TGG | 0.447746 | 4.1:-37449723 | MS.gene67371:CDS |
| GATAGTGTGTGGTGCTGATC+AGG | 0.450730 | 4.1:+37450101 | None:intergenic |
| GTTATCGGGGCGGCAAGTGG+AGG | 0.450840 | 4.1:+37450149 | None:intergenic |
| CACTAAGTCCTGTTAGGAAA+GGG | 0.453001 | 4.1:+37449895 | None:intergenic |
| ATCTGATTCATATTCGTCAC+TGG | 0.455201 | 4.1:+37449822 | None:intergenic |
| GAAAGCTACTTGAGCGTTGA+GGG | 0.468620 | 4.1:+37450004 | None:intergenic |
| GGCGGCAAGTGGAGGGAGAA+TGG | 0.471632 | 4.1:+37450157 | None:intergenic |
| GCTGTTATCGGGGCGGCAAG+TGG | 0.475128 | 4.1:+37450146 | None:intergenic |
| GAAGGTGAAGAGTTGGGATC+AGG | 0.478076 | 4.1:-37449732 | MS.gene67371:CDS |
| GTGAAACTTGTGTTGTTCTG+TGG | 0.480336 | 4.1:+37449586 | None:intergenic |
| TGTGGAATGCCGTTGTTTAG+TGG | 0.484317 | 4.1:+37449957 | None:intergenic |
| ACGGTGCAGGAGCTGATGTT+TGG | 0.489113 | 4.1:-37449786 | MS.gene67371:CDS |
| TGTTCAATAACAATAACAAT+GGG | 0.500430 | 4.1:-37449857 | MS.gene67371:CDS |
| CTGACAGAAGGTGAAGAGTT+GGG | 0.519027 | 4.1:-37449738 | MS.gene67371:CDS |
| ACTGACAGAAGGTGAAGAGT+TGG | 0.521230 | 4.1:-37449739 | MS.gene67371:CDS |
| ACCGCAGGGAACGACGGTGC+AGG | 0.530207 | 4.1:-37449799 | MS.gene67371:CDS |
| CCACTAAGTCCTGTTAGGAA+AGG | 0.530721 | 4.1:+37449894 | None:intergenic |
| CTGATCAGGAATATCAGTAC+TGG | 0.531685 | 4.1:+37450115 | None:intergenic |
| TTATCGGGGCGGCAAGTGGA+GGG | 0.550525 | 4.1:+37450150 | None:intergenic |
| AATAGGAAATATATGCAGAA+AGG | 0.551766 | 4.1:+37449439 | None:intergenic |
| ATTAAGACATTTCCGGTCAA+CGG | 0.552577 | 4.1:-37449501 | MS.gene67371:CDS |
| CGAAAGCTACTTGAGCGTTG+AGG | 0.552792 | 4.1:+37450003 | None:intergenic |
| TATATAGCAAGTTCAGTGGA+AGG | 0.554582 | 4.1:-37449684 | MS.gene67371:CDS |
| GTAGCTTTCGCAAAACCAAA+CGG | 0.556361 | 4.1:-37449990 | MS.gene67371:CDS |
| GTGTTCAATAACAATAACAA+TGG | 0.566776 | 4.1:-37449858 | MS.gene67371:CDS |
| GGTCAACAACATAACACTGA+TGG | 0.569982 | 4.1:-37449480 | MS.gene67371:CDS |
| GGATTAGTTGGAAAAGCTCA+AGG | 0.573572 | 4.1:-37449711 | MS.gene67371:CDS |
| TTATGTTGTTGACCGTTGAC+CGG | 0.573639 | 4.1:+37449489 | None:intergenic |
| AAGTTGTGGAAGTGAATGTA+AGG | 0.574643 | 4.1:+37450246 | None:intergenic |
| GAATATGAATCAGATACCGC+AGG | 0.584877 | 4.1:-37449814 | MS.gene67371:CDS |
| TATGGATTTGAGAGGCATAG+TGG | 0.588428 | 4.1:+37450292 | None:intergenic |
| TCTGATTCATATTCGTCACT+GGG | 0.589926 | 4.1:+37449823 | None:intergenic |
| CCATTGTTGTTATTGTTCTG+TGG | 0.590355 | 4.1:+37449939 | None:intergenic |
| GGAAGGAACAAGTCAAGTAA+TGG | 0.591485 | 4.1:-37449667 | MS.gene67371:CDS |
| TCACAACTTGCAATCATTGG+AGG | 0.595719 | 4.1:-37449561 | MS.gene67371:CDS |
| AGCTACTTGAGCGTTGAGGG+CGG | 0.596968 | 4.1:+37450007 | None:intergenic |
| GGTTGTTGCGGCTGTTATCG+GGG | 0.598779 | 4.1:+37450136 | None:intergenic |
| CCAACAGCAAGAGCAGTGAC+CGG | 0.600488 | 4.1:-37450044 | MS.gene67371:CDS |
| GAATGCCGTTGTTTAGTGGA+AGG | 0.601191 | 4.1:+37449961 | None:intergenic |
| CCACAGAACAATAACAACAA+TGG | 0.609944 | 4.1:-37449939 | MS.gene67371:CDS |
| AAGAATTCGAGTTGAAGTTG+TGG | 0.611757 | 4.1:+37450232 | None:intergenic |
| AATATCAGTACTGGTTGTTG+CGG | 0.614381 | 4.1:+37450124 | None:intergenic |
| GGCGGGGTTTGTAACGACTC+CGG | 0.617896 | 4.1:+37450025 | None:intergenic |
| ACAGGACTTAGTGGAAACAC+AGG | 0.630961 | 4.1:-37449885 | MS.gene67371:CDS |
| TCAGATACCGCAGGGAACGA+CGG | 0.633061 | 4.1:-37449805 | MS.gene67371:CDS |
| GGCAAGTGGAGGGAGAATGG+TGG | 0.639076 | 4.1:+37450160 | None:intergenic |
| CAGGACTTAGTGGAAACACA+GGG | 0.652633 | 4.1:-37449884 | MS.gene67371:CDS |
| TCCTGCACCGTCGTTCCCTG+CGG | 0.661601 | 4.1:+37449798 | None:intergenic |
| TTCATGCATGACATTCTAGG+CGG | 0.679448 | 4.1:-37450074 | MS.gene67371:CDS |
| ATAAGCAGTATGGATTTGAG+AGG | 0.680583 | 4.1:+37450284 | None:intergenic |
| TGTTGCGGCTGTTATCGGGG+CGG | 0.685301 | 4.1:+37450139 | None:intergenic |
| TTTGATGATGAACTGACAGA+AGG | 0.695500 | 4.1:-37449750 | MS.gene67371:CDS |
| GCAAACCTTCCACTAAACAA+CGG | 0.696199 | 4.1:-37449966 | MS.gene67371:CDS |
| AATATGAATCAGATACCGCA+GGG | 0.700296 | 4.1:-37449813 | MS.gene67371:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTCAATAACAATAACAAT+GGG | - | chr4.1:37449897-37449916 | MS.gene67371:CDS | 20.0% |
| ! | AATAGGAAATATATGCAGAA+AGG | + | chr4.1:37450318-37450337 | None:intergenic | 25.0% |
| ! | GTGTTCAATAACAATAACAA+TGG | - | chr4.1:37449896-37449915 | MS.gene67371:CDS | 25.0% |
| ! | TGCTATTATTAAGACATTTC+CGG | - | chr4.1:37450246-37450265 | MS.gene67371:CDS | 25.0% |
| !! | ATTTTATATAGCAAGTTCAG+TGG | - | chr4.1:37450066-37450085 | MS.gene67371:CDS | 25.0% |
| ! | TTTTTCATGCATGACATTCT+AGG | - | chr4.1:37449677-37449696 | MS.gene67371:CDS | 30.0% |
| AAGTTGTGGAAGTGAATGTA+AGG | + | chr4.1:37449511-37449530 | None:intergenic | 35.0% | |
| AATATGAATCAGATACCGCA+GGG | - | chr4.1:37449941-37449960 | MS.gene67371:CDS | 35.0% | |
| ACTGCAAAGTTTGAAGAGAA+TGG | - | chr4.1:37450115-37450134 | MS.gene67371:CDS | 35.0% | |
| ATAAGCAGTATGGATTTGAG+AGG | + | chr4.1:37449473-37449492 | None:intergenic | 35.0% | |
| ATCTGATTCATATTCGTCAC+TGG | + | chr4.1:37449935-37449954 | None:intergenic | 35.0% | |
| ATTAAGACATTTCCGGTCAA+CGG | - | chr4.1:37450253-37450272 | MS.gene67371:CDS | 35.0% | |
| CAATCACAACTTGCAATCAT+TGG | - | chr4.1:37450190-37450209 | MS.gene67371:CDS | 35.0% | |
| CCACAGAACAATAACAACAA+TGG | - | chr4.1:37449815-37449834 | MS.gene67371:CDS | 35.0% | |
| GATTCTGCTGAATCAACAAT+TGG | + | chr4.1:37449572-37449591 | None:intergenic | 35.0% | |
| TATATAGCAAGTTCAGTGGA+AGG | - | chr4.1:37450070-37450089 | MS.gene67371:CDS | 35.0% | |
| TATCAATGCCATAAGCAGTA+TGG | + | chr4.1:37449483-37449502 | None:intergenic | 35.0% | |
| TCTCAAATCCATACTGCTTA+TGG | - | chr4.1:37449472-37449491 | MS.gene67371:CDS | 35.0% | |
| TCTGATTCATATTCGTCACT+GGG | + | chr4.1:37449934-37449953 | None:intergenic | 35.0% | |
| ! | CCATTGTTGTTATTGTTCTG+TGG | + | chr4.1:37449818-37449837 | None:intergenic | 35.0% |
| ! | GCATGAAAAATGATAGTGTG+TGG | + | chr4.1:37449667-37449686 | None:intergenic | 35.0% |
| ! | GGAAAGTATGTGAATGCTAA+TGG | - | chr4.1:37450220-37450239 | MS.gene67371:CDS | 35.0% |
| !! | AAGAATTCGAGTTGAAGTTG+TGG | + | chr4.1:37449525-37449544 | None:intergenic | 35.0% |
| !! | AATATCAGTACTGGTTGTTG+CGG | + | chr4.1:37449633-37449652 | None:intergenic | 35.0% |
| !! | TTTGATGATGAACTGACAGA+AGG | - | chr4.1:37450004-37450023 | MS.gene67371:CDS | 35.0% |
| AACAATCTCCCTTTCCTAAC+AGG | - | chr4.1:37449851-37449870 | MS.gene67371:CDS | 40.0% | |
| CACTAAGTCCTGTTAGGAAA+GGG | + | chr4.1:37449862-37449881 | None:intergenic | 40.0% | |
| CTGATCAGGAATATCAGTAC+TGG | + | chr4.1:37449642-37449661 | None:intergenic | 40.0% | |
| GAAGATAGTCTCAGCTTCTT+TGG | - | chr4.1:37450142-37450161 | MS.gene67371:CDS | 40.0% | |
| GAATATGAATCAGATACCGC+AGG | - | chr4.1:37449940-37449959 | MS.gene67371:CDS | 40.0% | |
| GCAAACCTTCCACTAAACAA+CGG | - | chr4.1:37449788-37449807 | MS.gene67371:CDS | 40.0% | |
| GGAAGGAACAAGTCAAGTAA+TGG | - | chr4.1:37450087-37450106 | MS.gene67371:CDS | 40.0% | |
| GGTCAACAACATAACACTGA+TGG | - | chr4.1:37450274-37450293 | MS.gene67371:CDS | 40.0% | |
| GTAGCTTTCGCAAAACCAAA+CGG | - | chr4.1:37449764-37449783 | MS.gene67371:CDS | 40.0% | |
| TCACAACTTGCAATCATTGG+AGG | - | chr4.1:37450193-37450212 | MS.gene67371:CDS | 40.0% | |
| TGTTTCCACTAAGTCCTGTT+AGG | + | chr4.1:37449868-37449887 | None:intergenic | 40.0% | |
| TTATGTTGTTGACCGTTGAC+CGG | + | chr4.1:37450268-37450287 | None:intergenic | 40.0% | |
| TTCATGCATGACATTCTAGG+CGG | - | chr4.1:37449680-37449699 | MS.gene67371:CDS | 40.0% | |
| ! | GTGAAACTTGTGTTGTTCTG+TGG | + | chr4.1:37450171-37450190 | None:intergenic | 40.0% |
| ! | TATGGATTTGAGAGGCATAG+TGG | + | chr4.1:37449465-37449484 | None:intergenic | 40.0% |
| ! | TTGAGAGGCATAGTGGTAAA+AGG | + | chr4.1:37449458-37449477 | None:intergenic | 40.0% |
| !! | GGATTAGTTGGAAAAGCTCA+AGG | - | chr4.1:37450043-37450062 | MS.gene67371:CDS | 40.0% |
| ACAGGACTTAGTGGAAACAC+AGG | - | chr4.1:37449869-37449888 | MS.gene67371:CDS | 45.0% | |
| ACTGACAGAAGGTGAAGAGT+TGG | - | chr4.1:37450015-37450034 | MS.gene67371:CDS | 45.0% | |
| CAGGACTTAGTGGAAACACA+GGG | - | chr4.1:37449870-37449889 | MS.gene67371:CDS | 45.0% | |
| CCACTAAGTCCTGTTAGGAA+AGG | + | chr4.1:37449863-37449882 | None:intergenic | 45.0% | |
| CCTTTCCTAACAGGACTTAG+TGG | - | chr4.1:37449860-37449879 | MS.gene67371:CDS | 45.0% | |
| CTGACAGAAGGTGAAGAGTT+GGG | - | chr4.1:37450016-37450035 | MS.gene67371:CDS | 45.0% | |
| CTTGCAATCATTGGAGGAAC+TGG | - | chr4.1:37450199-37450218 | MS.gene67371:CDS | 45.0% | |
| GAATGCCGTTGTTTAGTGGA+AGG | + | chr4.1:37449796-37449815 | None:intergenic | 45.0% | |
| TGTGGAATGCCGTTGTTTAG+TGG | + | chr4.1:37449800-37449819 | None:intergenic | 45.0% | |
| ! | GAGTTGGGATCAGGATTAGT+TGG | - | chr4.1:37450031-37450050 | MS.gene67371:CDS | 45.0% |
| !! | GAAAGCTACTTGAGCGTTGA+GGG | + | chr4.1:37449753-37449772 | None:intergenic | 45.0% |
| CTGGTTGTTGCGGCTGTTAT+CGG | + | chr4.1:37449623-37449642 | None:intergenic | 50.0% | |
| GAAGGTGAAGAGTTGGGATC+AGG | - | chr4.1:37450022-37450041 | MS.gene67371:CDS | 50.0% | |
| TGGTTGTTGCGGCTGTTATC+GGG | + | chr4.1:37449622-37449641 | None:intergenic | 50.0% | |
| ! | CGAAAGCTACTTGAGCGTTG+AGG | + | chr4.1:37449754-37449773 | None:intergenic | 50.0% |
| !! | CACTGCTCTTGCTGTTGGAT+TGG | + | chr4.1:37449708-37449727 | None:intergenic | 50.0% |
| !! | GATAGTGTGTGGTGCTGATC+AGG | + | chr4.1:37449656-37449675 | None:intergenic | 50.0% |
| ACGGTGCAGGAGCTGATGTT+TGG | - | chr4.1:37449968-37449987 | MS.gene67371:CDS | 55.0% | |
| AGTGGAAGGTTTGCGCCGTT+TGG | + | chr4.1:37449782-37449801 | None:intergenic | 55.0% | |
| CCAACAGCAAGAGCAGTGAC+CGG | - | chr4.1:37449710-37449729 | MS.gene67371:CDS | 55.0% | |
| GGTTGTTGCGGCTGTTATCG+GGG | + | chr4.1:37449621-37449640 | None:intergenic | 55.0% | |
| TCAGATACCGCAGGGAACGA+CGG | - | chr4.1:37449949-37449968 | MS.gene67371:CDS | 55.0% | |
| !! | AGCTACTTGAGCGTTGAGGG+CGG | + | chr4.1:37449750-37449769 | None:intergenic | 55.0% |
| GGCAAGTGGAGGGAGAATGG+TGG | + | chr4.1:37449597-37449616 | None:intergenic | 60.0% | |
| GGCGGGGTTTGTAACGACTC+CGG | + | chr4.1:37449732-37449751 | None:intergenic | 60.0% | |
| TGTTGCGGCTGTTATCGGGG+CGG | + | chr4.1:37449618-37449637 | None:intergenic | 60.0% | |
| TTATCGGGGCGGCAAGTGGA+GGG | + | chr4.1:37449607-37449626 | None:intergenic | 60.0% | |
| ! | CCGGTCACTGCTCTTGCTGT+TGG | + | chr4.1:37449713-37449732 | None:intergenic | 60.0% |
| !! | CTACTTGAGCGTTGAGGGCG+GGG | + | chr4.1:37449748-37449767 | None:intergenic | 60.0% |
| !! | GCTACTTGAGCGTTGAGGGC+GGG | + | chr4.1:37449749-37449768 | None:intergenic | 60.0% |
| GCTGTTATCGGGGCGGCAAG+TGG | + | chr4.1:37449611-37449630 | None:intergenic | 65.0% | |
| GGCGGCAAGTGGAGGGAGAA+TGG | + | chr4.1:37449600-37449619 | None:intergenic | 65.0% | |
| GTTATCGGGGCGGCAAGTGG+AGG | + | chr4.1:37449608-37449627 | None:intergenic | 65.0% | |
| TCCTGCACCGTCGTTCCCTG+CGG | + | chr4.1:37449959-37449978 | None:intergenic | 65.0% | |
| ACCGCAGGGAACGACGGTGC+AGG | - | chr4.1:37449955-37449974 | MS.gene67371:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 37449437 | 37450339 | 37449437 | ID=MS.gene67371 |
| chr4.1 | mRNA | 37449437 | 37450339 | 37449437 | ID=MS.gene67371.t1;Parent=MS.gene67371 |
| chr4.1 | exon | 37449437 | 37450339 | 37449437 | ID=MS.gene67371.t1.exon1;Parent=MS.gene67371.t1 |
| chr4.1 | CDS | 37449437 | 37450339 | 37449437 | ID=cds.MS.gene67371.t1;Parent=MS.gene67371.t1 |
| Gene Sequence |
| Protein sequence |
