Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91976.t1 | CAA57782.1 | 99.3 | 293 | 2 | 0 | 1 | 293 | 20 | 312 | 3.30E-165 | 590.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91976.t1 | P26690 | 87.0 | 293 | 38 | 0 | 1 | 293 | 21 | 313 | 5.7e-150 | 531.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91976.t1 | Q40333 | 99.3 | 293 | 2 | 0 | 1 | 293 | 20 | 312 | 2.4e-165 | 590.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene91976 | -0.81596 | 7.07E-52 | -1.69E-46 |
| MS.gene049483 | MS.gene91976 | 0.819516 | 1.12E-52 | -1.69E-46 |
| MS.gene049611 | MS.gene91976 | 0.801395 | 9.19E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene91976 | -0.80446 | 2.14E-49 | -1.69E-46 |
| MS.gene050216 | MS.gene91976 | -0.818851 | 1.58E-52 | -1.69E-46 |
| MS.gene050363 | MS.gene91976 | 0.813487 | 2.50E-51 | -1.69E-46 |
| MS.gene050380 | MS.gene91976 | 0.848877 | 4.63E-60 | -1.69E-46 |
| MS.gene050381 | MS.gene91976 | 0.902441 | 9.66E-79 | -1.69E-46 |
| MS.gene050504 | MS.gene91976 | -0.838219 | 3.27E-57 | -1.69E-46 |
| MS.gene050612 | MS.gene91976 | -0.808324 | 3.28E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene91976 | -0.828789 | 7.39E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene91976 | -0.832542 | 8.91E-56 | -1.69E-46 |
| MS.gene050883 | MS.gene91976 | 0.907487 | 4.81E-81 | -1.69E-46 |
| MS.gene051044 | MS.gene91976 | 0.80525 | 1.46E-49 | -1.69E-46 |
| MS.gene05104 | MS.gene91976 | 0.833095 | 6.49E-56 | -1.69E-46 |
| MS.gene051127 | MS.gene91976 | 0.869504 | 2.95E-66 | -1.69E-46 |
| MS.gene05141 | MS.gene91976 | 0.838186 | 3.34E-57 | -1.69E-46 |
| MS.gene051560 | MS.gene91976 | -0.800084 | 1.70E-48 | -1.69E-46 |
| MS.gene051946 | MS.gene91976 | 0.879611 | 1.08E-69 | -1.69E-46 |
| MS.gene052164 | MS.gene91976 | -0.82917 | 5.98E-55 | -1.69E-46 |
| MS.gene052482 | MS.gene91976 | -0.804357 | 2.25E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene91976 | -0.811333 | 7.38E-51 | -1.69E-46 |
| MS.gene052966 | MS.gene91976 | -0.803233 | 3.84E-49 | -1.69E-46 |
| MS.gene053069 | MS.gene91976 | 0.806318 | 8.72E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene91976 | -0.821584 | 3.74E-53 | -1.69E-46 |
| MS.gene053420 | MS.gene91976 | 0.837786 | 4.23E-57 | -1.69E-46 |
| MS.gene053436 | MS.gene91976 | -0.803568 | 3.28E-49 | -1.69E-46 |
| MS.gene053488 | MS.gene91976 | 0.813395 | 2.62E-51 | -1.69E-46 |
| MS.gene053549 | MS.gene91976 | 0.845635 | 3.59E-59 | -1.69E-46 |
| MS.gene053561 | MS.gene91976 | 0.82538 | 4.84E-54 | -1.69E-46 |
| MS.gene053626 | MS.gene91976 | -0.807744 | 4.35E-50 | -1.69E-46 |
| MS.gene053826 | MS.gene91976 | 0.843716 | 1.18E-58 | -1.69E-46 |
| MS.gene054003 | MS.gene91976 | -0.807389 | 5.18E-50 | -1.69E-46 |
| MS.gene054435 | MS.gene91976 | 0.80276 | 4.81E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene91976 | -0.826717 | 2.33E-54 | -1.69E-46 |
| MS.gene054706 | MS.gene91976 | 0.806881 | 6.63E-50 | -1.69E-46 |
| MS.gene054707 | MS.gene91976 | 0.812967 | 3.25E-51 | -1.69E-46 |
| MS.gene054708 | MS.gene91976 | 0.866837 | 2.13E-65 | -1.69E-46 |
| MS.gene055124 | MS.gene91976 | 0.882056 | 1.43E-70 | -1.69E-46 |
| MS.gene055139 | MS.gene91976 | 0.861877 | 7.53E-64 | -1.69E-46 |
| MS.gene055154 | MS.gene91976 | 0.85532 | 6.83E-62 | -1.69E-46 |
| MS.gene055202 | MS.gene91976 | 0.835665 | 1.47E-56 | -1.69E-46 |
| MS.gene055362 | MS.gene91976 | -0.801598 | 8.35E-49 | -1.69E-46 |
| MS.gene055401 | MS.gene91976 | 0.830778 | 2.42E-55 | -1.69E-46 |
| MS.gene055502 | MS.gene91976 | -0.81637 | 5.73E-52 | -1.69E-46 |
| MS.gene055577 | MS.gene91976 | -0.806824 | 6.82E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene91976 | -0.809843 | 1.55E-50 | -1.69E-46 |
| MS.gene056166 | MS.gene91976 | -0.800431 | 1.45E-48 | -1.69E-46 |
| MS.gene056298 | MS.gene91976 | 0.824747 | 6.83E-54 | -1.69E-46 |
| MS.gene056310 | MS.gene91976 | 0.907827 | 3.33E-81 | -1.69E-46 |
| MS.gene056311 | MS.gene91976 | 0.891943 | 2.50E-74 | -1.69E-46 |
| MS.gene056313 | MS.gene91976 | 0.919279 | 5.49E-87 | -1.69E-46 |
| MS.gene056408 | MS.gene91976 | 0.835554 | 1.57E-56 | -1.69E-46 |
| MS.gene056504 | MS.gene91976 | -0.834812 | 2.41E-56 | -1.69E-46 |
| MS.gene056647 | MS.gene91976 | 0.802857 | 4.60E-49 | -1.69E-46 |
| MS.gene057014 | MS.gene91976 | 0.862564 | 4.63E-64 | -1.69E-46 |
| MS.gene057086 | MS.gene91976 | -0.807099 | 5.96E-50 | -1.69E-46 |
| MS.gene057473 | MS.gene91976 | 0.808881 | 2.49E-50 | -1.69E-46 |
| MS.gene057499 | MS.gene91976 | 0.816534 | 5.26E-52 | -1.69E-46 |
| MS.gene057506 | MS.gene91976 | 0.826406 | 2.76E-54 | -1.69E-46 |
| MS.gene057770 | MS.gene91976 | 0.807598 | 4.67E-50 | -1.69E-46 |
| MS.gene058068 | MS.gene91976 | 0.81554 | 8.77E-52 | -1.69E-46 |
| MS.gene058093 | MS.gene91976 | 0.815046 | 1.13E-51 | -1.69E-46 |
| MS.gene058099 | MS.gene91976 | 0.843871 | 1.07E-58 | -1.69E-46 |
| MS.gene058108 | MS.gene91976 | 0.862443 | 5.05E-64 | -1.69E-46 |
| MS.gene058109 | MS.gene91976 | 0.881803 | 1.77E-70 | -1.69E-46 |
| MS.gene058111 | MS.gene91976 | 0.853547 | 2.22E-61 | -1.69E-46 |
| MS.gene058117 | MS.gene91976 | 0.809382 | 1.95E-50 | -1.69E-46 |
| MS.gene058157 | MS.gene91976 | -0.826754 | 2.28E-54 | -1.69E-46 |
| MS.gene058170 | MS.gene91976 | 0.867511 | 1.30E-65 | -1.69E-46 |
| MS.gene058171 | MS.gene91976 | 0.894989 | 1.47E-75 | -1.69E-46 |
| MS.gene058172 | MS.gene91976 | 0.848743 | 5.05E-60 | -1.69E-46 |
| MS.gene058173 | MS.gene91976 | 0.88665 | 2.84E-72 | -1.69E-46 |
| MS.gene058174 | MS.gene91976 | 0.871266 | 7.79E-67 | -1.69E-46 |
| MS.gene058175 | MS.gene91976 | 0.893464 | 6.13E-75 | -1.69E-46 |
| MS.gene058179 | MS.gene91976 | 0.83985 | 1.24E-57 | -1.69E-46 |
| MS.gene058180 | MS.gene91976 | 0.840757 | 7.17E-58 | -1.69E-46 |
| MS.gene058268 | MS.gene91976 | 0.800712 | 1.27E-48 | -1.69E-46 |
| MS.gene058269 | MS.gene91976 | 0.800646 | 1.31E-48 | -1.69E-46 |
| MS.gene05837 | MS.gene91976 | -0.825481 | 4.58E-54 | -1.69E-46 |
| MS.gene058420 | MS.gene91976 | -0.812545 | 4.02E-51 | -1.69E-46 |
| MS.gene058493 | MS.gene91976 | 0.829158 | 6.02E-55 | -1.69E-46 |
| MS.gene058494 | MS.gene91976 | 0.811861 | 5.66E-51 | -1.69E-46 |
| MS.gene058628 | MS.gene91976 | 0.806625 | 7.51E-50 | -1.69E-46 |
| MS.gene058629 | MS.gene91976 | 0.811504 | 6.77E-51 | -1.69E-46 |
| MS.gene058630 | MS.gene91976 | 0.819667 | 1.03E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene91976 | -0.821719 | 3.48E-53 | -1.69E-46 |
| MS.gene059037 | MS.gene91976 | 0.845097 | 5.02E-59 | -1.69E-46 |
| MS.gene059044 | MS.gene91976 | 0.812774 | 3.58E-51 | -1.69E-46 |
| MS.gene059045 | MS.gene91976 | 0.859007 | 5.57E-63 | -1.69E-46 |
| MS.gene059052 | MS.gene91976 | 0.814783 | 1.29E-51 | -1.69E-46 |
| MS.gene059223 | MS.gene91976 | 0.85727 | 1.83E-62 | -1.69E-46 |
| MS.gene059367 | MS.gene91976 | -0.840198 | 1.00E-57 | -1.69E-46 |
| MS.gene059690 | MS.gene91976 | 0.804355 | 2.25E-49 | -1.69E-46 |
| MS.gene059694 | MS.gene91976 | 0.811694 | 6.16E-51 | -1.69E-46 |
| MS.gene059697 | MS.gene91976 | 0.820362 | 7.14E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene91976 | -0.826624 | 2.45E-54 | -1.69E-46 |
| MS.gene059916 | MS.gene91976 | 0.810934 | 9.00E-51 | -1.69E-46 |
| MS.gene059944 | MS.gene91976 | 0.817936 | 2.55E-52 | -1.69E-46 |
| MS.gene060187 | MS.gene91976 | 0.851707 | 7.45E-61 | -1.69E-46 |
| MS.gene060482 | MS.gene91976 | -0.846119 | 2.65E-59 | -1.69E-46 |
| MS.gene060593 | MS.gene91976 | 0.82302 | 1.73E-53 | -1.69E-46 |
| MS.gene060595 | MS.gene91976 | 0.834875 | 2.33E-56 | -1.69E-46 |
| MS.gene060778 | MS.gene91976 | -0.84161 | 4.28E-58 | -1.69E-46 |
| MS.gene06077 | MS.gene91976 | -0.851184 | 1.05E-60 | -1.69E-46 |
| MS.gene060982 | MS.gene91976 | -0.803535 | 3.33E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene91976 | MS.gene062932 | PPI |
| MS.gene91976 | MS.gene040151 | PPI |
| MS.gene91976 | MS.gene50700 | PPI |
| MS.gene91976 | MS.gene008793 | PPI |
| MS.gene91976 | MS.gene024362 | PPI |
| MS.gene91976 | MS.gene91446 | PPI |
| MS.gene91976 | MS.gene008794 | PPI |
| MS.gene91976 | MS.gene23359 | PPI |
| MS.gene91976 | MS.gene95889 | PPI |
| MS.gene91976 | MS.gene54933 | PPI |
| MS.gene91976 | MS.gene98697 | PPI |
| MS.gene91976 | MS.gene53169 | PPI |
| MS.gene040151 | MS.gene91976 | PPI |
| MS.gene91976 | MS.gene93058 | PPI |
| MS.gene91976 | MS.gene72560 | PPI |
| MS.gene91976 | MS.gene55382 | PPI |
| MS.gene91976 | MS.gene003638 | PPI |
| MS.gene91976 | MS.gene056488 | PPI |
| MS.gene91976 | MS.gene93059 | PPI |
| MS.gene91976 | MS.gene93783 | PPI |
| MS.gene91976 | MS.gene97981 | PPI |
| MS.gene91976 | MS.gene056487 | PPI |
| MS.gene91976 | MS.gene99693 | PPI |
| MS.gene91976 | MS.gene42146 | PPI |
| MS.gene91976 | MS.gene42873 | PPI |
| MS.gene91976 | MS.gene87111 | PPI |
| MS.gene91976 | MS.gene62620 | PPI |
| MS.gene91976 | MS.gene97980 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91976.t1 | MTR_5g097900 | 97.952 | 293 | 6 | 0 | 1 | 293 | 20 | 312 | 0.0 | 595 |
| MS.gene91976.t1 | MTR_5g097910 | 97.611 | 293 | 7 | 0 | 1 | 293 | 20 | 312 | 0.0 | 595 |
| MS.gene91976.t1 | MTR_5g097940 | 97.611 | 293 | 7 | 0 | 1 | 293 | 20 | 312 | 0.0 | 595 |
| MS.gene91976.t1 | MTR_3g083130 | 70.408 | 294 | 86 | 1 | 1 | 293 | 21 | 314 | 4.00e-160 | 448 |
| MS.gene91976.t1 | MTR_0374s0050 | 65.385 | 286 | 96 | 3 | 1 | 283 | 20 | 305 | 6.11e-135 | 384 |
| MS.gene91976.t1 | MTR_4g072320 | 54.643 | 280 | 120 | 3 | 1 | 278 | 17 | 291 | 6.54e-102 | 301 |
| MS.gene91976.t1 | MTR_4g072350 | 51.815 | 303 | 134 | 5 | 1 | 292 | 17 | 318 | 4.31e-101 | 299 |
| MS.gene91976.t1 | MTR_4g072360 | 52.313 | 281 | 131 | 3 | 1 | 278 | 17 | 297 | 7.74e-100 | 296 |
| MS.gene91976.t1 | MTR_6g073110 | 50.704 | 284 | 137 | 3 | 1 | 281 | 17 | 300 | 1.26e-96 | 287 |
| MS.gene91976.t1 | MTR_8g070095 | 42.049 | 283 | 161 | 2 | 1 | 281 | 16 | 297 | 7.37e-74 | 229 |
| MS.gene91976.t1 | MTR_7g063580 | 43.382 | 272 | 142 | 3 | 30 | 292 | 83 | 351 | 1.57e-71 | 224 |
| MS.gene91976.t1 | MTR_4g036845 | 40.989 | 283 | 162 | 4 | 1 | 281 | 14 | 293 | 3.65e-71 | 222 |
| MS.gene91976.t1 | MTR_8g070115 | 43.750 | 256 | 141 | 2 | 29 | 283 | 42 | 295 | 9.17e-70 | 219 |
| MS.gene91976.t1 | MTR_4g021350 | 42.905 | 296 | 152 | 6 | 1 | 291 | 16 | 299 | 5.20e-66 | 209 |
| MS.gene91976.t1 | MTR_4g021350 | 43.214 | 280 | 144 | 5 | 1 | 275 | 16 | 285 | 7.60e-64 | 202 |
| MS.gene91976.t1 | MTR_4g021410 | 41.447 | 304 | 150 | 6 | 1 | 293 | 17 | 303 | 1.59e-63 | 202 |
| MS.gene91976.t1 | MTR_4g021410 | 42.491 | 273 | 137 | 4 | 29 | 293 | 6 | 266 | 1.04e-60 | 194 |
| MS.gene91976.t1 | MTR_4g021450 | 41.993 | 281 | 149 | 3 | 1 | 281 | 17 | 283 | 7.82e-60 | 193 |
| MS.gene91976.t1 | MTR_7g070500 | 38.214 | 280 | 165 | 5 | 1 | 279 | 23 | 295 | 1.12e-58 | 190 |
| MS.gene91976.t1 | MTR_7g070500 | 38.686 | 274 | 160 | 5 | 1 | 273 | 23 | 289 | 2.97e-58 | 189 |
| MS.gene91976.t1 | MTR_4g072060 | 38.411 | 302 | 171 | 6 | 1 | 291 | 11 | 308 | 2.56e-56 | 184 |
| MS.gene91976.t1 | MTR_4g021410 | 41.423 | 239 | 120 | 4 | 63 | 293 | 1 | 227 | 7.14e-47 | 157 |
| MS.gene91976.t1 | MTR_4g021450 | 42.466 | 219 | 114 | 2 | 63 | 281 | 1 | 207 | 4.67e-44 | 150 |
| MS.gene91976.t1 | MTR_4g021450 | 42.405 | 158 | 88 | 1 | 124 | 281 | 10 | 164 | 4.63e-38 | 133 |
| MS.gene91976.t1 | MTR_6g072650 | 44.218 | 147 | 46 | 5 | 157 | 292 | 13 | 134 | 8.69e-28 | 105 |
| MS.gene91976.t1 | MTR_6g072710 | 46.018 | 113 | 56 | 2 | 172 | 281 | 1 | 111 | 5.83e-26 | 99.4 |
| MS.gene91976.t1 | MTR_3g449790 | 26.712 | 292 | 148 | 10 | 15 | 266 | 73 | 338 | 9.56e-18 | 82.8 |
| MS.gene91976.t1 | MTR_3g449790 | 26.174 | 298 | 148 | 11 | 15 | 266 | 73 | 344 | 1.96e-16 | 79.0 |
| MS.gene91976.t1 | MTR_7g114990 | 25.000 | 288 | 152 | 11 | 22 | 270 | 52 | 314 | 1.15e-12 | 67.8 |
| MS.gene91976.t1 | MTR_7g021850 | 25.087 | 287 | 161 | 9 | 22 | 273 | 43 | 310 | 4.41e-12 | 65.9 |
| MS.gene91976.t1 | MTR_1g102750 | 23.377 | 308 | 167 | 10 | 5 | 270 | 29 | 309 | 4.78e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91976.t1 | AT1G59960 | 56.597 | 288 | 115 | 5 | 1 | 281 | 21 | 305 | 2.17e-113 | 330 |
| MS.gene91976.t1 | AT1G59950 | 56.250 | 288 | 116 | 5 | 1 | 281 | 15 | 299 | 1.83e-106 | 312 |
| MS.gene91976.t1 | AT2G37770 | 43.860 | 285 | 149 | 4 | 1 | 281 | 16 | 293 | 1.86e-76 | 236 |
| MS.gene91976.t1 | AT2G37790 | 43.158 | 285 | 151 | 4 | 1 | 281 | 16 | 293 | 2.58e-76 | 235 |
| MS.gene91976.t1 | AT5G62420 | 44.366 | 284 | 152 | 4 | 1 | 281 | 14 | 294 | 3.03e-76 | 235 |
| MS.gene91976.t1 | AT5G01670 | 42.403 | 283 | 154 | 6 | 1 | 281 | 24 | 299 | 2.24e-73 | 228 |
| MS.gene91976.t1 | AT2G37760 | 43.463 | 283 | 147 | 4 | 1 | 280 | 16 | 288 | 3.86e-72 | 224 |
| MS.gene91976.t1 | AT2G37760 | 43.463 | 283 | 147 | 4 | 1 | 280 | 16 | 288 | 3.86e-72 | 224 |
| MS.gene91976.t1 | AT2G37760 | 43.929 | 280 | 144 | 4 | 1 | 277 | 16 | 285 | 3.75e-71 | 221 |
| MS.gene91976.t1 | AT2G37760 | 43.262 | 282 | 147 | 4 | 1 | 279 | 16 | 287 | 1.61e-70 | 221 |
| MS.gene91976.t1 | AT2G37760 | 43.262 | 282 | 147 | 4 | 1 | 279 | 16 | 287 | 1.61e-70 | 221 |
| MS.gene91976.t1 | AT3G53880 | 42.969 | 256 | 143 | 2 | 27 | 281 | 40 | 293 | 1.84e-69 | 218 |
| MS.gene91976.t1 | AT5G01670 | 38.710 | 310 | 154 | 7 | 1 | 281 | 24 | 326 | 2.15e-67 | 214 |
| MS.gene91976.t1 | AT3G53880 | 42.800 | 250 | 140 | 2 | 27 | 275 | 40 | 287 | 3.57e-67 | 212 |
| MS.gene91976.t1 | AT2G21260 | 38.328 | 287 | 162 | 6 | 1 | 276 | 11 | 293 | 1.85e-64 | 205 |
| MS.gene91976.t1 | AT2G21250 | 37.086 | 302 | 175 | 6 | 1 | 291 | 11 | 308 | 4.14e-63 | 201 |
| MS.gene91976.t1 | AT2G37760 | 43.333 | 240 | 129 | 3 | 43 | 279 | 6 | 241 | 1.74e-58 | 188 |
| MS.gene91976.t1 | AT2G37760 | 43.333 | 240 | 129 | 3 | 43 | 279 | 6 | 241 | 1.74e-58 | 188 |
| MS.gene91976.t1 | AT2G37770 | 46.939 | 196 | 94 | 3 | 1 | 193 | 16 | 204 | 2.29e-53 | 176 |
| MS.gene91976.t1 | AT2G21250 | 40.976 | 205 | 110 | 5 | 1 | 198 | 11 | 211 | 2.83e-45 | 153 |
| MS.gene91976.t1 | AT2G21260 | 34.545 | 220 | 131 | 5 | 68 | 276 | 8 | 225 | 1.39e-40 | 141 |
| MS.gene91976.t1 | AT1G06690 | 27.336 | 289 | 154 | 9 | 16 | 266 | 85 | 355 | 8.21e-20 | 89.0 |
| MS.gene91976.t1 | AT5G53580 | 24.912 | 285 | 159 | 10 | 25 | 271 | 80 | 347 | 1.28e-15 | 76.6 |
| MS.gene91976.t1 | AT1G60680 | 27.044 | 318 | 168 | 15 | 6 | 281 | 27 | 322 | 6.44e-15 | 74.3 |
| MS.gene91976.t1 | AT1G60750 | 25.887 | 282 | 159 | 12 | 25 | 281 | 50 | 306 | 4.25e-12 | 66.2 |
| MS.gene91976.t1 | AT1G60690 | 24.458 | 323 | 169 | 14 | 6 | 281 | 27 | 321 | 1.87e-11 | 64.3 |
Find 56 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCTTCAATTGGACTATT+TGG | 0.148242 | 5.2:-82447331 | MS.gene91976:CDS |
| AATCAAAGATACGCAAATTT+TGG | 0.165725 | 5.2:+82446746 | None:intergenic |
| ATTGGAAATGAAAACTTTCC+AGG | 0.287256 | 5.2:+82447273 | None:intergenic |
| TGGACTTGTATTTGATTCAT+TGG | 0.300948 | 5.2:-82447311 | MS.gene91976:CDS |
| GTGTCTATAACCTTGTTTGA+TGG | 0.333209 | 5.2:+82447624 | None:intergenic |
| TCATTCTCCATAACTTCATT+AGG | 0.344871 | 5.2:+82446886 | None:intergenic |
| CTGCTTGCACCTTTCCTCAA+TGG | 0.366580 | 5.2:+82446913 | None:intergenic |
| AAAATTTGCGTATCTTTGAT+TGG | 0.369647 | 5.2:-82446744 | MS.gene91976:CDS |
| CATTTGATGTGAAAGGTGTT+TGG | 0.370719 | 5.2:-82447230 | MS.gene91976:CDS |
| TCTTTCTTACATGTGAAGTC+AGG | 0.371382 | 5.2:+82447670 | None:intergenic |
| CTTGGACTCACTAAAGCTAT+TGG | 0.375778 | 5.2:-82447183 | MS.gene91976:CDS |
| CAAACACCTTTCACATCAAA+TGG | 0.381803 | 5.2:+82447231 | None:intergenic |
| AGTCCAGGCTTGGTTGGTCC+AGG | 0.384417 | 5.2:+82446664 | None:intergenic |
| TTCATGTAGGACTCTTCAAT+TGG | 0.407231 | 5.2:-82447340 | MS.gene91976:intron |
| ATCCCTGGACCAACCAAGCC+TGG | 0.412790 | 5.2:-82446667 | MS.gene91976:CDS |
| TCTTTCCTTATCATAGCTCT+TGG | 0.419142 | 5.2:+82446774 | None:intergenic |
| AAGAGATCTGCCACATCAAT+TGG | 0.421446 | 5.2:+82447255 | None:intergenic |
| TTGAAAGAGGCAATTGAACT+TGG | 0.422526 | 5.2:-82447553 | MS.gene91976:CDS |
| TGTTCCCAAGAGCTATGATA+AGG | 0.425757 | 5.2:-82446779 | MS.gene91976:CDS |
| ATTTGATGTGAAAGGTGTTT+GGG | 0.426961 | 5.2:-82447229 | MS.gene91976:CDS |
| CAGAGGACCTAATGAAGTTA+TGG | 0.431802 | 5.2:-82446893 | MS.gene91976:CDS |
| CTTTCCTTATCATAGCTCTT+GGG | 0.433848 | 5.2:+82446775 | None:intergenic |
| TTTGATACTGCTGCTGCCTA+TGG | 0.438326 | 5.2:-82447601 | MS.gene91976:CDS |
| AAGCAAAATCGTTTGATCCC+TGG | 0.455139 | 5.2:-82446682 | MS.gene91976:CDS |
| AAGTTTCAAGCTTTCCTCCA+TGG | 0.483539 | 5.2:+82447203 | None:intergenic |
| TGAATTACTTGATTGACTGC+TGG | 0.489360 | 5.2:+82447102 | None:intergenic |
| ATGGAGGAAAGCTTGAAACT+TGG | 0.498400 | 5.2:-82447201 | MS.gene91976:CDS |
| TTGCACAAATATCTCTAAGA+TGG | 0.499975 | 5.2:-82446825 | MS.gene91976:CDS |
| TCTTGGTGAGGCTTTGAAAG+AGG | 0.504118 | 5.2:-82447566 | MS.gene91976:CDS |
| CTTTCTTACATGTGAAGTCA+GGG | 0.506502 | 5.2:+82447671 | None:intergenic |
| GTCCAGGCTTGGTTGGTCCA+GGG | 0.519273 | 5.2:+82446665 | None:intergenic |
| GAGGTCATTGAGTCCAGGCT+TGG | 0.520820 | 5.2:+82446654 | None:intergenic |
| GAAGATGCCTGTGGTTGGAA+TGG | 0.535658 | 5.2:-82447701 | None:intergenic |
| TATGGTTCAGAACAAGCTCT+TGG | 0.542359 | 5.2:-82447583 | MS.gene91976:CDS |
| AAGAGCTTGTTCTGAACCAT+AGG | 0.546096 | 5.2:+82447585 | None:intergenic |
| TCATTGAGTCCAGGCTTGGT+TGG | 0.552459 | 5.2:+82446658 | None:intergenic |
| AAGATGCCTGTGGTTGGAAT+GGG | 0.555328 | 5.2:-82447700 | MS.gene91976:CDS |
| TCATAGAGGTCATTGAGTCC+AGG | 0.572409 | 5.2:+82446649 | None:intergenic |
| GCTGATCCCATTCCAACCAC+AGG | 0.587516 | 5.2:+82447694 | None:intergenic |
| ATCATTGAAGCCATCAAACA+AGG | 0.587661 | 5.2:-82447634 | MS.gene91976:CDS |
| GAAAGGTGTTTGGGAATCCA+TGG | 0.587744 | 5.2:-82447220 | MS.gene91976:CDS |
| CTAAGATGGCTATATGAACA+AGG | 0.588672 | 5.2:-82446811 | MS.gene91976:CDS |
| AGGTGGAGATGAACCTTGCA+TGG | 0.591438 | 5.2:-82446996 | MS.gene91976:CDS |
| TTTCTTACATGTGAAGTCAG+GGG | 0.620409 | 5.2:+82447672 | None:intergenic |
| CAATTGAAGATGCCTGTGGT+TGG | 0.621459 | 5.2:-82447706 | None:intergenic |
| TGGCCACTTAGTTCTCAACC+TGG | 0.621982 | 5.2:-82447291 | MS.gene91976:CDS |
| AGAGCAGGAATAACAAGATG+AGG | 0.624425 | 5.2:+82447472 | None:intergenic |
| TTTCCAGGTTGAGAACTAAG+TGG | 0.629025 | 5.2:+82447288 | None:intergenic |
| CAGGAATAACAAGATGAGGA+TGG | 0.629084 | 5.2:+82447476 | None:intergenic |
| AAAGAGATTGCAGATGCACA+TGG | 0.633321 | 5.2:-82446856 | MS.gene91976:CDS |
| TTCAGAACAAGCTCTTGGTG+AGG | 0.637219 | 5.2:-82447578 | MS.gene91976:CDS |
| TTGAGGAAAGGTGCAAGCAG+AGG | 0.642704 | 5.2:-82446910 | MS.gene91976:CDS |
| CTCTTGCCATTTGATGTGAA+AGG | 0.649522 | 5.2:-82447237 | MS.gene91976:CDS |
| AGGTGTTTGGGAATCCATGG+AGG | 0.719619 | 5.2:-82447217 | MS.gene91976:CDS |
| ATTGACTGCTGGAAGAACAG+TGG | 0.720759 | 5.2:+82447113 | None:intergenic |
| TAGTCAATTGAAGATGCCTG+TGG | 0.737799 | 5.2:-82447710 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCAATATTACATTCATT+TGG | - | chr5.2:82446923-82446942 | MS.gene91976:CDS | 15.0% |
| !!! | TTGATTTGTTAATTTCATGT+AGG | - | chr5.2:82446986-82447005 | MS.gene91976:CDS | 20.0% |
| ! | AAAATTTGCGTATCTTTGAT+TGG | - | chr5.2:82447595-82447614 | MS.gene91976:CDS | 25.0% |
| ! | CAAGAAGTTAATCAAAACTT+AGG | + | chr5.2:82447272-82447291 | None:intergenic | 25.0% |
| ! | CAATGAACTCATATATTTAC+AGG | - | chr5.2:82447323-82447342 | MS.gene91976:CDS | 25.0% |
| ! | TCAATATTACATTCATTTGG+AGG | - | chr5.2:82446926-82446945 | MS.gene91976:CDS | 25.0% |
| !! | AATCAAAGATACGCAAATTT+TGG | + | chr5.2:82447596-82447615 | None:intergenic | 25.0% |
| !!! | TTTTGTTACTTCCAAACTTT+GGG | - | chr5.2:82446830-82446849 | MS.gene91976:CDS | 25.0% |
| !!! | TTTTTGTTACTTCCAAACTT+TGG | - | chr5.2:82446829-82446848 | MS.gene91976:CDS | 25.0% |
| ATTGGAAATGAAAACTTTCC+AGG | + | chr5.2:82447069-82447088 | None:intergenic | 30.0% | |
| TCATTCTCCATAACTTCATT+AGG | + | chr5.2:82447456-82447475 | None:intergenic | 30.0% | |
| TGAACTCATATATTTACAGG+TGG | - | chr5.2:82447326-82447345 | MS.gene91976:CDS | 30.0% | |
| TGGACTTGTATTTGATTCAT+TGG | - | chr5.2:82447028-82447047 | MS.gene91976:intron | 30.0% | |
| ! | GTTTTCATTTCCAATTGATG+TGG | - | chr5.2:82447074-82447093 | MS.gene91976:intron | 30.0% |
| ! | TTGCACAAATATCTCTAAGA+TGG | - | chr5.2:82447514-82447533 | MS.gene91976:CDS | 30.0% |
| !! | ATTTGATGTGAAAGGTGTTT+GGG | - | chr5.2:82447110-82447129 | MS.gene91976:CDS | 30.0% |
| ATCATTGAAGCCATCAAACA+AGG | - | chr5.2:82446705-82446724 | MS.gene91976:CDS | 35.0% | |
| CAAACACCTTTCACATCAAA+TGG | + | chr5.2:82447111-82447130 | None:intergenic | 35.0% | |
| CTAAGATGGCTATATGAACA+AGG | - | chr5.2:82447528-82447547 | MS.gene91976:CDS | 35.0% | |
| CTTTCCTTATCATAGCTCTT+GGG | + | chr5.2:82447567-82447586 | None:intergenic | 35.0% | |
| CTTTCTTACATGTGAAGTCA+GGG | + | chr5.2:82446671-82446690 | None:intergenic | 35.0% | |
| GACTCTTCAATTGGACTATT+TGG | - | chr5.2:82447008-82447027 | MS.gene91976:intron | 35.0% | |
| TCTTTCCTTATCATAGCTCT+TGG | + | chr5.2:82447568-82447587 | None:intergenic | 35.0% | |
| TCTTTCTTACATGTGAAGTC+AGG | + | chr5.2:82446672-82446691 | None:intergenic | 35.0% | |
| TGAATTACTTGATTGACTGC+TGG | + | chr5.2:82447240-82447259 | None:intergenic | 35.0% | |
| TTCATGTAGGACTCTTCAAT+TGG | - | chr5.2:82446999-82447018 | MS.gene91976:intron | 35.0% | |
| TTGAAAGAGGCAATTGAACT+TGG | - | chr5.2:82446786-82446805 | MS.gene91976:CDS | 35.0% | |
| TTTCTTACATGTGAAGTCAG+GGG | + | chr5.2:82446670-82446689 | None:intergenic | 35.0% | |
| ! | GTGTCTATAACCTTGTTTGA+TGG | + | chr5.2:82446718-82446737 | None:intergenic | 35.0% |
| ! | TAACTGCATTTTCACCATTG+AGG | - | chr5.2:82447412-82447431 | MS.gene91976:intron | 35.0% |
| !! | CATTTGATGTGAAAGGTGTT+TGG | - | chr5.2:82447109-82447128 | MS.gene91976:intron | 35.0% |
| !! | TTGAGAGATTTTTGAAGAGC+AGG | + | chr5.2:82446885-82446904 | None:intergenic | 35.0% |
| AAAGAGATTGCAGATGCACA+TGG | - | chr5.2:82447483-82447502 | MS.gene91976:CDS | 40.0% | |
| AAGAGATCTGCCACATCAAT+TGG | + | chr5.2:82447087-82447106 | None:intergenic | 40.0% | |
| AAGCAAAATCGTTTGATCCC+TGG | - | chr5.2:82447657-82447676 | MS.gene91976:CDS | 40.0% | |
| AAGTTTCAAGCTTTCCTCCA+TGG | + | chr5.2:82447139-82447158 | None:intergenic | 40.0% | |
| AGAGCAGGAATAACAAGATG+AGG | + | chr5.2:82446870-82446889 | None:intergenic | 40.0% | |
| ATGGAGGAAAGCTTGAAACT+TGG | - | chr5.2:82447138-82447157 | MS.gene91976:CDS | 40.0% | |
| CAGAGGACCTAATGAAGTTA+TGG | - | chr5.2:82447446-82447465 | MS.gene91976:intron | 40.0% | |
| CAGGAATAACAAGATGAGGA+TGG | + | chr5.2:82446866-82446885 | None:intergenic | 40.0% | |
| CTTGGACTCACTAAAGCTAT+TGG | - | chr5.2:82447156-82447175 | MS.gene91976:CDS | 40.0% | |
| TATGGTTCAGAACAAGCTCT+TGG | - | chr5.2:82446756-82446775 | MS.gene91976:CDS | 40.0% | |
| TGTTCCCAAGAGCTATGATA+AGG | - | chr5.2:82447560-82447579 | MS.gene91976:CDS | 40.0% | |
| ! | AAGAGCTTGTTCTGAACCAT+AGG | + | chr5.2:82446757-82446776 | None:intergenic | 40.0% |
| ! | AGAGAGTTTTGCAACGCAAA+TGG | - | chr5.2:82447381-82447400 | MS.gene91976:intron | 40.0% |
| ! | CTCTTGCCATTTGATGTGAA+AGG | - | chr5.2:82447102-82447121 | MS.gene91976:intron | 40.0% |
| ! | GCATTTTCACCATTGAGGAA+AGG | - | chr5.2:82447417-82447436 | MS.gene91976:intron | 40.0% |
| ! | GTTTTCAGTGACCCAAAGTT+TGG | + | chr5.2:82446844-82446863 | None:intergenic | 40.0% |
| ! | TTTCCAGGTTGAGAACTAAG+TGG | + | chr5.2:82447054-82447073 | None:intergenic | 40.0% |
| ATTGACTGCTGGAAGAACAG+TGG | + | chr5.2:82447229-82447248 | None:intergenic | 45.0% | |
| TCATAGAGGTCATTGAGTCC+AGG | + | chr5.2:82447693-82447712 | None:intergenic | 45.0% | |
| TTCAGAACAAGCTCTTGGTG+AGG | - | chr5.2:82446761-82446780 | MS.gene91976:CDS | 45.0% | |
| TTTGATACTGCTGCTGCCTA+TGG | - | chr5.2:82446738-82446757 | MS.gene91976:CDS | 45.0% | |
| ! | GCTTCTTTTGTTGCCATGCA+AGG | + | chr5.2:82447359-82447378 | None:intergenic | 45.0% |
| !! | GAAAGGTGTTTGGGAATCCA+TGG | - | chr5.2:82447119-82447138 | MS.gene91976:CDS | 45.0% |
| !! | TCTTGGTGAGGCTTTGAAAG+AGG | - | chr5.2:82446773-82446792 | MS.gene91976:CDS | 45.0% |
| AGGTGGAGATGAACCTTGCA+TGG | - | chr5.2:82447343-82447362 | MS.gene91976:intron | 50.0% | |
| AGGTGTTTGGGAATCCATGG+AGG | - | chr5.2:82447122-82447141 | MS.gene91976:CDS | 50.0% | |
| CTGCTTGCACCTTTCCTCAA+TGG | + | chr5.2:82447429-82447448 | None:intergenic | 50.0% | |
| ! | TCATTGAGTCCAGGCTTGGT+TGG | + | chr5.2:82447684-82447703 | None:intergenic | 50.0% |
| ! | TGGCCACTTAGTTCTCAACC+TGG | - | chr5.2:82447048-82447067 | MS.gene91976:intron | 50.0% |
| ! | TTGAGGAAAGGTGCAAGCAG+AGG | - | chr5.2:82447429-82447448 | MS.gene91976:intron | 50.0% |
| GAGGTCATTGAGTCCAGGCT+TGG | + | chr5.2:82447688-82447707 | None:intergenic | 55.0% | |
| GCTGATCCCATTCCAACCAC+AGG | + | chr5.2:82446648-82446667 | None:intergenic | 55.0% | |
| ATCCCTGGACCAACCAAGCC+TGG | - | chr5.2:82447672-82447691 | MS.gene91976:CDS | 60.0% | |
| ! | AGTCCAGGCTTGGTTGGTCC+AGG | + | chr5.2:82447678-82447697 | None:intergenic | 60.0% |
| ! | GTCCAGGCTTGGTTGGTCCA+GGG | + | chr5.2:82447677-82447696 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 82446642 | 82447719 | 82446642 | ID=MS.gene91976 |
| chr5.2 | mRNA | 82446642 | 82447719 | 82446642 | ID=MS.gene91976.t1;Parent=MS.gene91976 |
| chr5.2 | exon | 82447457 | 82447719 | 82447457 | ID=MS.gene91976.t1.exon1;Parent=MS.gene91976.t1 |
| chr5.2 | CDS | 82447457 | 82447719 | 82447457 | ID=cds.MS.gene91976.t1;Parent=MS.gene91976.t1 |
| chr5.2 | exon | 82447110 | 82447353 | 82447110 | ID=MS.gene91976.t1.exon2;Parent=MS.gene91976.t1 |
| chr5.2 | CDS | 82447110 | 82447353 | 82447110 | ID=cds.MS.gene91976.t1;Parent=MS.gene91976.t1 |
| chr5.2 | exon | 82446642 | 82447016 | 82446642 | ID=MS.gene91976.t1.exon3;Parent=MS.gene91976.t1 |
| chr5.2 | CDS | 82446642 | 82447016 | 82446642 | ID=cds.MS.gene91976.t1;Parent=MS.gene91976.t1 |
| Gene Sequence |
| Protein sequence |
