Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38173.t1 | CAA57782.1 | 98.6 | 293 | 4 | 0 | 1 | 293 | 20 | 312 | 2.10E-164 | 588.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38173.t1 | P26690 | 87.0 | 293 | 38 | 0 | 1 | 293 | 21 | 313 | 5.7e-150 | 531.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38173.t1 | Q40333 | 98.6 | 293 | 4 | 0 | 1 | 293 | 20 | 312 | 1.5e-164 | 588.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene38173 | -0.807184 | 5.72E-50 | -1.69E-46 |
| MS.gene049232 | MS.gene38173 | -0.831168 | 1.94E-55 | -1.69E-46 |
| MS.gene049312 | MS.gene38173 | 0.802414 | 5.67E-49 | -1.69E-46 |
| MS.gene049320 | MS.gene38173 | -0.809918 | 1.49E-50 | -1.69E-46 |
| MS.gene049483 | MS.gene38173 | 0.807989 | 3.86E-50 | -1.69E-46 |
| MS.gene049611 | MS.gene38173 | 0.816325 | 5.86E-52 | -1.69E-46 |
| MS.gene05010 | MS.gene38173 | -0.819872 | 9.24E-53 | -1.69E-46 |
| MS.gene050216 | MS.gene38173 | -0.839094 | 1.95E-57 | -1.69E-46 |
| MS.gene050323 | MS.gene38173 | -0.810213 | 1.29E-50 | -1.69E-46 |
| MS.gene050363 | MS.gene38173 | 0.834032 | 3.79E-56 | -1.69E-46 |
| MS.gene050380 | MS.gene38173 | 0.879753 | 9.63E-70 | -1.69E-46 |
| MS.gene050381 | MS.gene38173 | 0.906708 | 1.11E-80 | -1.69E-46 |
| MS.gene050496 | MS.gene38173 | -0.804782 | 1.83E-49 | -1.69E-46 |
| MS.gene050502 | MS.gene38173 | -0.816565 | 5.18E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene38173 | -0.843706 | 1.19E-58 | -1.69E-46 |
| MS.gene050612 | MS.gene38173 | -0.811427 | 7.04E-51 | -1.69E-46 |
| MS.gene05080 | MS.gene38173 | -0.802594 | 5.21E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene38173 | -0.849753 | 2.64E-60 | -1.69E-46 |
| MS.gene050871 | MS.gene38173 | -0.853447 | 2.38E-61 | -1.69E-46 |
| MS.gene050883 | MS.gene38173 | 0.88869 | 4.72E-73 | -1.69E-46 |
| MS.gene050986 | MS.gene38173 | -0.809377 | 1.95E-50 | -1.69E-46 |
| MS.gene051044 | MS.gene38173 | 0.806342 | 8.62E-50 | -1.69E-46 |
| MS.gene05104 | MS.gene38173 | 0.830264 | 3.24E-55 | -1.69E-46 |
| MS.gene051127 | MS.gene38173 | 0.86203 | 6.76E-64 | -1.69E-46 |
| MS.gene05141 | MS.gene38173 | 0.859165 | 4.99E-63 | -1.69E-46 |
| MS.gene051509 | MS.gene38173 | -0.822139 | 2.78E-53 | -1.69E-46 |
| MS.gene051946 | MS.gene38173 | 0.862837 | 3.82E-64 | -1.69E-46 |
| MS.gene052164 | MS.gene38173 | -0.83511 | 2.03E-56 | -1.69E-46 |
| MS.gene05234 | MS.gene38173 | 0.804082 | 2.56E-49 | -1.69E-46 |
| MS.gene052482 | MS.gene38173 | -0.809636 | 1.72E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene38173 | -0.81282 | 3.50E-51 | -1.69E-46 |
| MS.gene052966 | MS.gene38173 | -0.832008 | 1.21E-55 | -1.69E-46 |
| MS.gene053018 | MS.gene38173 | -0.804767 | 1.84E-49 | -1.69E-46 |
| MS.gene053069 | MS.gene38173 | 0.809429 | 1.90E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene38173 | -0.836 | 1.21E-56 | -1.69E-46 |
| MS.gene053420 | MS.gene38173 | 0.844258 | 8.45E-59 | -1.69E-46 |
| MS.gene053436 | MS.gene38173 | -0.828944 | 6.78E-55 | -1.69E-46 |
| MS.gene053488 | MS.gene38173 | 0.803411 | 3.53E-49 | -1.69E-46 |
| MS.gene053549 | MS.gene38173 | 0.832115 | 1.14E-55 | -1.69E-46 |
| MS.gene053561 | MS.gene38173 | 0.838581 | 2.64E-57 | -1.69E-46 |
| MS.gene053574 | MS.gene38173 | -0.822654 | 2.11E-53 | -1.69E-46 |
| MS.gene053626 | MS.gene38173 | -0.832349 | 9.94E-56 | -1.69E-46 |
| MS.gene053826 | MS.gene38173 | 0.820609 | 6.27E-53 | -1.69E-46 |
| MS.gene054003 | MS.gene38173 | -0.826077 | 3.31E-54 | -1.69E-46 |
| MS.gene054054 | MS.gene38173 | 0.81502 | 1.14E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene38173 | -0.848983 | 4.33E-60 | -1.69E-46 |
| MS.gene054616 | MS.gene38173 | 0.801256 | 9.81E-49 | -1.69E-46 |
| MS.gene054706 | MS.gene38173 | 0.814336 | 1.62E-51 | -1.69E-46 |
| MS.gene054708 | MS.gene38173 | 0.854855 | 9.32E-62 | -1.69E-46 |
| MS.gene054954 | MS.gene38173 | -0.802012 | 6.87E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene38173 | 0.883788 | 3.34E-71 | -1.69E-46 |
| MS.gene055139 | MS.gene38173 | 0.847699 | 9.80E-60 | -1.69E-46 |
| MS.gene055154 | MS.gene38173 | 0.852272 | 5.15E-61 | -1.69E-46 |
| MS.gene055202 | MS.gene38173 | 0.836939 | 6.98E-57 | -1.69E-46 |
| MS.gene055362 | MS.gene38173 | -0.814248 | 1.70E-51 | -1.69E-46 |
| MS.gene055401 | MS.gene38173 | 0.838186 | 3.34E-57 | -1.69E-46 |
| MS.gene055502 | MS.gene38173 | -0.823276 | 1.51E-53 | -1.69E-46 |
| MS.gene055577 | MS.gene38173 | -0.826758 | 2.28E-54 | -1.69E-46 |
| MS.gene055750 | MS.gene38173 | -0.811426 | 7.04E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene38173 | -0.810572 | 1.08E-50 | -1.69E-46 |
| MS.gene056040 | MS.gene38173 | -0.806505 | 7.96E-50 | -1.69E-46 |
| MS.gene056166 | MS.gene38173 | -0.825043 | 5.81E-54 | -1.69E-46 |
| MS.gene056310 | MS.gene38173 | 0.926687 | 3.33E-91 | -1.69E-46 |
| MS.gene056311 | MS.gene38173 | 0.903102 | 4.91E-79 | -1.69E-46 |
| MS.gene056313 | MS.gene38173 | 0.927633 | 8.96E-92 | -1.69E-46 |
| MS.gene056408 | MS.gene38173 | 0.832588 | 8.68E-56 | -1.69E-46 |
| MS.gene056422 | MS.gene38173 | -0.809575 | 1.77E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene38173 | -0.840365 | 9.08E-58 | -1.69E-46 |
| MS.gene056510 | MS.gene38173 | -0.81884 | 1.59E-52 | -1.69E-46 |
| MS.gene056647 | MS.gene38173 | 0.813154 | 2.95E-51 | -1.69E-46 |
| MS.gene056878 | MS.gene38173 | -0.819455 | 1.15E-52 | -1.69E-46 |
| MS.gene057014 | MS.gene38173 | 0.852192 | 5.42E-61 | -1.69E-46 |
| MS.gene057086 | MS.gene38173 | -0.821039 | 4.99E-53 | -1.69E-46 |
| MS.gene057473 | MS.gene38173 | 0.815315 | 9.84E-52 | -1.69E-46 |
| MS.gene057506 | MS.gene38173 | 0.812763 | 3.60E-51 | -1.69E-46 |
| MS.gene057770 | MS.gene38173 | 0.808073 | 3.71E-50 | -1.69E-46 |
| MS.gene05787 | MS.gene38173 | -0.809613 | 1.74E-50 | -1.69E-46 |
| MS.gene058041 | MS.gene38173 | -0.802146 | 6.44E-49 | -1.69E-46 |
| MS.gene058093 | MS.gene38173 | 0.818249 | 2.16E-52 | -1.69E-46 |
| MS.gene058099 | MS.gene38173 | 0.83627 | 1.03E-56 | -1.69E-46 |
| MS.gene058108 | MS.gene38173 | 0.862102 | 6.43E-64 | -1.69E-46 |
| MS.gene058109 | MS.gene38173 | 0.872895 | 2.24E-67 | -1.69E-46 |
| MS.gene058111 | MS.gene38173 | 0.822255 | 2.61E-53 | -1.69E-46 |
| MS.gene058157 | MS.gene38173 | -0.838762 | 2.37E-57 | -1.69E-46 |
| MS.gene058170 | MS.gene38173 | 0.851998 | 6.16E-61 | -1.69E-46 |
| MS.gene058171 | MS.gene38173 | 0.889106 | 3.26E-73 | -1.69E-46 |
| MS.gene058172 | MS.gene38173 | 0.818218 | 2.20E-52 | -1.69E-46 |
| MS.gene058173 | MS.gene38173 | 0.883191 | 5.53E-71 | -1.69E-46 |
| MS.gene058174 | MS.gene38173 | 0.850745 | 1.39E-60 | -1.69E-46 |
| MS.gene058175 | MS.gene38173 | 0.88707 | 1.97E-72 | -1.69E-46 |
| MS.gene058176 | MS.gene38173 | 0.81573 | 7.96E-52 | -1.69E-46 |
| MS.gene058179 | MS.gene38173 | 0.833301 | 5.77E-56 | -1.69E-46 |
| MS.gene058180 | MS.gene38173 | 0.849941 | 2.34E-60 | -1.69E-46 |
| MS.gene058183 | MS.gene38173 | -0.800345 | 1.51E-48 | -1.69E-46 |
| MS.gene05837 | MS.gene38173 | -0.8542 | 1.44E-61 | -1.69E-46 |
| MS.gene058420 | MS.gene38173 | -0.810836 | 9.46E-51 | -1.69E-46 |
| MS.gene058493 | MS.gene38173 | 0.814333 | 1.63E-51 | -1.69E-46 |
| MS.gene058494 | MS.gene38173 | 0.801889 | 7.28E-49 | -1.69E-46 |
| MS.gene058629 | MS.gene38173 | 0.800156 | 1.64E-48 | -1.69E-46 |
| MS.gene058630 | MS.gene38173 | 0.804141 | 2.49E-49 | -1.69E-46 |
| MS.gene058691 | MS.gene38173 | 0.805437 | 1.34E-49 | -1.69E-46 |
| MS.gene058840 | MS.gene38173 | 0.818932 | 1.51E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene38173 | -0.831865 | 1.31E-55 | -1.69E-46 |
| MS.gene059034 | MS.gene38173 | -0.803904 | 2.79E-49 | -1.69E-46 |
| MS.gene059037 | MS.gene38173 | 0.868379 | 6.82E-66 | -1.69E-46 |
| MS.gene059038 | MS.gene38173 | 0.807412 | 5.12E-50 | -1.69E-46 |
| MS.gene059044 | MS.gene38173 | 0.811084 | 8.35E-51 | -1.69E-46 |
| MS.gene059045 | MS.gene38173 | 0.858571 | 7.52E-63 | -1.69E-46 |
| MS.gene059052 | MS.gene38173 | 0.811222 | 7.80E-51 | -1.69E-46 |
| MS.gene059223 | MS.gene38173 | 0.844035 | 9.70E-59 | -1.69E-46 |
| MS.gene059367 | MS.gene38173 | -0.871196 | 8.21E-67 | -1.69E-46 |
| MS.gene059368 | MS.gene38173 | -0.836297 | 1.02E-56 | -1.69E-46 |
| MS.gene059517 | MS.gene38173 | -0.824195 | 9.21E-54 | -1.69E-46 |
| MS.gene059680 | MS.gene38173 | -0.81711 | 3.91E-52 | -1.69E-46 |
| MS.gene059690 | MS.gene38173 | 0.808073 | 3.70E-50 | -1.69E-46 |
| MS.gene059691 | MS.gene38173 | 0.810362 | 1.20E-50 | -1.69E-46 |
| MS.gene059694 | MS.gene38173 | 0.815824 | 7.58E-52 | -1.69E-46 |
| MS.gene059697 | MS.gene38173 | 0.832872 | 7.38E-56 | -1.69E-46 |
| MS.gene059718 | MS.gene38173 | -0.810693 | 1.02E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene38173 | -0.833104 | 6.46E-56 | -1.69E-46 |
| MS.gene059916 | MS.gene38173 | 0.800398 | 1.47E-48 | -1.69E-46 |
| MS.gene059943 | MS.gene38173 | 0.810362 | 1.20E-50 | -1.69E-46 |
| MS.gene059944 | MS.gene38173 | 0.827323 | 1.67E-54 | -1.69E-46 |
| MS.gene060187 | MS.gene38173 | 0.823282 | 1.51E-53 | -1.69E-46 |
| MS.gene060482 | MS.gene38173 | -0.874692 | 5.54E-68 | -1.69E-46 |
| MS.gene060593 | MS.gene38173 | 0.803949 | 2.73E-49 | -1.69E-46 |
| MS.gene060595 | MS.gene38173 | 0.830305 | 3.17E-55 | -1.69E-46 |
| MS.gene060778 | MS.gene38173 | -0.849428 | 3.26E-60 | -1.69E-46 |
| MS.gene06077 | MS.gene38173 | -0.852652 | 4.01E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38173 | MS.gene93783 | PPI |
| MS.gene62620 | MS.gene38173 | PPI |
| MS.gene056488 | MS.gene38173 | PPI |
| MS.gene38173 | MS.gene93058 | PPI |
| MS.gene97981 | MS.gene38173 | PPI |
| MS.gene38173 | MS.gene55382 | PPI |
| MS.gene38173 | MS.gene99693 | PPI |
| MS.gene54933 | MS.gene38173 | PPI |
| MS.gene72560 | MS.gene38173 | PPI |
| MS.gene040151 | MS.gene38173 | PPI |
| MS.gene38173 | MS.gene056487 | PPI |
| MS.gene38173 | MS.gene062932 | PPI |
| MS.gene38173 | MS.gene42146 | PPI |
| MS.gene38173 | MS.gene008793 | PPI |
| MS.gene38173 | MS.gene42873 | PPI |
| MS.gene38173 | MS.gene87111 | PPI |
| MS.gene50700 | MS.gene38173 | PPI |
| MS.gene23359 | MS.gene38173 | PPI |
| MS.gene38173 | MS.gene97980 | PPI |
| MS.gene003638 | MS.gene38173 | PPI |
| MS.gene38173 | MS.gene53169 | PPI |
| MS.gene38173 | MS.gene024362 | PPI |
| MS.gene38173 | MS.gene91446 | PPI |
| MS.gene38173 | MS.gene008794 | PPI |
| MS.gene38173 | MS.gene95889 | PPI |
| MS.gene93059 | MS.gene38173 | PPI |
| MS.gene38173 | MS.gene98697 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38173.t1 | MTR_5g097900 | 97.952 | 293 | 6 | 0 | 1 | 293 | 20 | 312 | 0.0 | 595 |
| MS.gene38173.t1 | MTR_5g097910 | 97.611 | 293 | 7 | 0 | 1 | 293 | 20 | 312 | 0.0 | 594 |
| MS.gene38173.t1 | MTR_5g097940 | 97.611 | 293 | 7 | 0 | 1 | 293 | 20 | 312 | 0.0 | 594 |
| MS.gene38173.t1 | MTR_3g083130 | 69.728 | 294 | 88 | 1 | 1 | 293 | 21 | 314 | 6.12e-159 | 445 |
| MS.gene38173.t1 | MTR_0374s0050 | 64.685 | 286 | 98 | 3 | 1 | 283 | 20 | 305 | 9.30e-134 | 382 |
| MS.gene38173.t1 | MTR_4g072320 | 53.929 | 280 | 122 | 3 | 1 | 278 | 17 | 291 | 9.76e-101 | 298 |
| MS.gene38173.t1 | MTR_4g072350 | 51.155 | 303 | 136 | 5 | 1 | 292 | 17 | 318 | 6.64e-100 | 296 |
| MS.gene38173.t1 | MTR_4g072360 | 51.601 | 281 | 133 | 3 | 1 | 278 | 17 | 297 | 1.02e-98 | 293 |
| MS.gene38173.t1 | MTR_6g073110 | 51.056 | 284 | 136 | 3 | 1 | 281 | 17 | 300 | 2.66e-97 | 289 |
| MS.gene38173.t1 | MTR_8g070095 | 42.049 | 283 | 161 | 2 | 1 | 281 | 16 | 297 | 7.06e-74 | 229 |
| MS.gene38173.t1 | MTR_4g036845 | 40.989 | 283 | 162 | 4 | 1 | 281 | 14 | 293 | 5.75e-71 | 222 |
| MS.gene38173.t1 | MTR_7g063580 | 43.015 | 272 | 143 | 3 | 30 | 292 | 83 | 351 | 6.84e-71 | 223 |
| MS.gene38173.t1 | MTR_8g070115 | 43.750 | 256 | 141 | 2 | 29 | 283 | 42 | 295 | 1.23e-69 | 218 |
| MS.gene38173.t1 | MTR_4g021350 | 42.657 | 286 | 149 | 5 | 1 | 281 | 16 | 291 | 8.09e-65 | 206 |
| MS.gene38173.t1 | MTR_4g021410 | 41.447 | 304 | 150 | 6 | 1 | 293 | 17 | 303 | 5.64e-64 | 203 |
| MS.gene38173.t1 | MTR_4g021350 | 42.500 | 280 | 146 | 5 | 1 | 275 | 16 | 285 | 9.74e-63 | 200 |
| MS.gene38173.t1 | MTR_4g021410 | 42.491 | 273 | 137 | 4 | 29 | 293 | 6 | 266 | 3.66e-61 | 195 |
| MS.gene38173.t1 | MTR_4g021450 | 41.993 | 281 | 149 | 3 | 1 | 281 | 17 | 283 | 3.64e-60 | 194 |
| MS.gene38173.t1 | MTR_7g070500 | 38.214 | 280 | 165 | 5 | 1 | 279 | 23 | 295 | 1.18e-58 | 190 |
| MS.gene38173.t1 | MTR_7g070500 | 38.686 | 274 | 160 | 5 | 1 | 273 | 23 | 289 | 3.34e-58 | 189 |
| MS.gene38173.t1 | MTR_4g072060 | 38.742 | 302 | 170 | 6 | 1 | 291 | 11 | 308 | 3.35e-57 | 186 |
| MS.gene38173.t1 | MTR_4g021410 | 41.841 | 239 | 119 | 4 | 63 | 293 | 1 | 227 | 8.50e-48 | 159 |
| MS.gene38173.t1 | MTR_4g021450 | 42.922 | 219 | 113 | 2 | 63 | 281 | 1 | 207 | 6.09e-45 | 152 |
| MS.gene38173.t1 | MTR_4g021450 | 43.038 | 158 | 87 | 1 | 124 | 281 | 10 | 164 | 5.45e-39 | 135 |
| MS.gene38173.t1 | MTR_6g072650 | 43.537 | 147 | 47 | 5 | 157 | 292 | 13 | 134 | 4.20e-27 | 103 |
| MS.gene38173.t1 | MTR_6g072710 | 45.133 | 113 | 57 | 2 | 172 | 281 | 1 | 111 | 2.93e-25 | 97.4 |
| MS.gene38173.t1 | MTR_3g449790 | 26.370 | 292 | 149 | 10 | 15 | 266 | 73 | 338 | 1.85e-17 | 82.0 |
| MS.gene38173.t1 | MTR_3g449790 | 25.839 | 298 | 149 | 11 | 15 | 266 | 73 | 344 | 3.87e-16 | 78.2 |
| MS.gene38173.t1 | MTR_7g114990 | 25.000 | 288 | 152 | 11 | 22 | 270 | 52 | 314 | 2.05e-12 | 67.0 |
| MS.gene38173.t1 | MTR_7g021850 | 25.087 | 287 | 161 | 9 | 22 | 273 | 43 | 310 | 2.76e-12 | 66.6 |
| MS.gene38173.t1 | MTR_1g102750 | 23.052 | 308 | 168 | 10 | 5 | 270 | 29 | 309 | 7.68e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38173.t1 | AT1G59960 | 55.903 | 288 | 117 | 5 | 1 | 281 | 21 | 305 | 2.55e-112 | 328 |
| MS.gene38173.t1 | AT1G59950 | 55.556 | 288 | 118 | 5 | 1 | 281 | 15 | 299 | 1.95e-105 | 310 |
| MS.gene38173.t1 | AT2G37770 | 43.860 | 285 | 149 | 4 | 1 | 281 | 16 | 293 | 1.99e-76 | 236 |
| MS.gene38173.t1 | AT5G62420 | 44.366 | 284 | 152 | 4 | 1 | 281 | 14 | 294 | 3.16e-76 | 235 |
| MS.gene38173.t1 | AT2G37790 | 42.807 | 285 | 152 | 4 | 1 | 281 | 16 | 293 | 9.49e-76 | 234 |
| MS.gene38173.t1 | AT5G01670 | 42.403 | 283 | 154 | 6 | 1 | 281 | 24 | 299 | 4.93e-73 | 227 |
| MS.gene38173.t1 | AT2G37760 | 43.110 | 283 | 148 | 4 | 1 | 280 | 16 | 288 | 7.72e-72 | 223 |
| MS.gene38173.t1 | AT2G37760 | 43.110 | 283 | 148 | 4 | 1 | 280 | 16 | 288 | 7.72e-72 | 223 |
| MS.gene38173.t1 | AT2G37760 | 43.571 | 280 | 145 | 4 | 1 | 277 | 16 | 285 | 6.24e-71 | 221 |
| MS.gene38173.t1 | AT2G37760 | 42.908 | 282 | 148 | 4 | 1 | 279 | 16 | 287 | 3.08e-70 | 220 |
| MS.gene38173.t1 | AT2G37760 | 42.908 | 282 | 148 | 4 | 1 | 279 | 16 | 287 | 3.08e-70 | 220 |
| MS.gene38173.t1 | AT3G53880 | 42.578 | 256 | 144 | 2 | 27 | 281 | 40 | 293 | 1.29e-68 | 216 |
| MS.gene38173.t1 | AT5G01670 | 38.710 | 310 | 154 | 7 | 1 | 281 | 24 | 326 | 4.28e-67 | 213 |
| MS.gene38173.t1 | AT3G53880 | 42.400 | 250 | 141 | 2 | 27 | 275 | 40 | 287 | 2.72e-66 | 210 |
| MS.gene38173.t1 | AT2G21260 | 38.676 | 287 | 161 | 6 | 1 | 276 | 11 | 293 | 2.98e-65 | 207 |
| MS.gene38173.t1 | AT2G21250 | 37.417 | 302 | 174 | 6 | 1 | 291 | 11 | 308 | 7.05e-64 | 203 |
| MS.gene38173.t1 | AT2G37760 | 42.917 | 240 | 130 | 3 | 43 | 279 | 6 | 241 | 2.96e-58 | 187 |
| MS.gene38173.t1 | AT2G37760 | 42.917 | 240 | 130 | 3 | 43 | 279 | 6 | 241 | 2.96e-58 | 187 |
| MS.gene38173.t1 | AT2G37770 | 46.939 | 196 | 94 | 3 | 1 | 193 | 16 | 204 | 2.58e-53 | 176 |
| MS.gene38173.t1 | AT2G21250 | 41.463 | 205 | 109 | 5 | 1 | 198 | 11 | 211 | 5.66e-46 | 155 |
| MS.gene38173.t1 | AT2G21260 | 34.545 | 220 | 131 | 5 | 68 | 276 | 8 | 225 | 1.07e-40 | 142 |
| MS.gene38173.t1 | AT1G06690 | 27.273 | 286 | 152 | 9 | 16 | 263 | 85 | 352 | 1.67e-19 | 87.8 |
| MS.gene38173.t1 | AT1G60680 | 27.044 | 318 | 168 | 15 | 6 | 281 | 27 | 322 | 1.93e-15 | 75.9 |
| MS.gene38173.t1 | AT5G53580 | 24.561 | 285 | 160 | 10 | 25 | 271 | 80 | 347 | 4.62e-15 | 75.1 |
| MS.gene38173.t1 | AT1G60750 | 25.887 | 282 | 159 | 12 | 25 | 281 | 50 | 306 | 2.81e-12 | 66.6 |
| MS.gene38173.t1 | AT1G60690 | 24.921 | 317 | 175 | 13 | 6 | 281 | 27 | 321 | 2.17e-11 | 63.9 |
Find 61 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCTTCAATTGGACTATT+TGG | 0.148242 | 5.3:-79218301 | MS.gene38173:CDS |
| AATCAAAGATACGCAAATTT+TGG | 0.165725 | 5.3:+79217706 | None:intergenic |
| TTGCATTGCAAAACTCTCTA+AGG | 0.274401 | 5.3:+79217922 | None:intergenic |
| ATTGGAAATGAAAACTTTCC+AGG | 0.288960 | 5.3:+79218243 | None:intergenic |
| TGGACTTGTATTTGATTCAT+TGG | 0.300948 | 5.3:-79218281 | MS.gene38173:CDS |
| GTGTCTATAACCTTGTTTGA+TGG | 0.333209 | 5.3:+79218598 | None:intergenic |
| AGGCCTGGCTTGGTTGGTCC+AGG | 0.344379 | 5.3:+79217624 | None:intergenic |
| CTTTGATGTGAAAGGTGTTT+GGG | 0.367550 | 5.3:-79218199 | MS.gene38173:CDS |
| AAAATTTGCGTATCTTTGAT+TGG | 0.369647 | 5.3:-79217704 | MS.gene38173:CDS |
| CCTTTGATGTGAAAGGTGTT+TGG | 0.370147 | 5.3:-79218200 | MS.gene38173:CDS |
| TCTTTCTTACATGTGAAGTC+AGG | 0.371382 | 5.3:+79218644 | None:intergenic |
| TCATTCTCCATAACCTCATT+TGG | 0.392662 | 5.3:+79217846 | None:intergenic |
| TTTGATACTGCTGCTGCATA+TGG | 0.396016 | 5.3:-79218575 | MS.gene38173:CDS |
| TTCATGTAGGACTCTTCAAT+TGG | 0.407231 | 5.3:-79218310 | MS.gene38173:intron |
| CAGAGGACCAAATGAGGTTA+TGG | 0.408273 | 5.3:-79217853 | MS.gene38173:CDS |
| AAAAGATCTGCCACATCAAT+TGG | 0.410974 | 5.3:+79218225 | None:intergenic |
| CTTGGACTGACTAAAGCTAT+TGG | 0.416542 | 5.3:-79218153 | MS.gene38173:CDS |
| TCTTTCCTTATCATAGCTCT+TGG | 0.419142 | 5.3:+79217734 | None:intergenic |
| TTGAAAGAGGCAATTGAACT+TGG | 0.422526 | 5.3:-79218527 | MS.gene38173:CDS |
| TGTTCCCAAGAGCTATGATA+AGG | 0.425757 | 5.3:-79217739 | MS.gene38173:CDS |
| CTTTCCTTATCATAGCTCTT+GGG | 0.433848 | 5.3:+79217735 | None:intergenic |
| TCATTGAGGCCTGGCTTGGT+TGG | 0.438358 | 5.3:+79217618 | None:intergenic |
| AAGCAAAATCGTTTGATCCC+TGG | 0.455139 | 5.3:-79217642 | MS.gene38173:CDS |
| CAAACACCTTTCACATCAAA+GGG | 0.459202 | 5.3:+79218201 | None:intergenic |
| AAAGTTTAGAAGTAACAAAA+AGG | 0.467615 | 5.3:+79218486 | None:intergenic |
| GAGGTCATTGAGGCCTGGCT+TGG | 0.476217 | 5.3:+79217614 | None:intergenic |
| ATCCCTGGACCAACCAAGCC+AGG | 0.483424 | 5.3:-79217627 | MS.gene38173:CDS |
| AAGTTTCAAGCTTTCCTCCA+TGG | 0.483539 | 5.3:+79218173 | None:intergenic |
| GGCCTGGCTTGGTTGGTCCA+GGG | 0.485174 | 5.3:+79217625 | None:intergenic |
| TATGGCTCAGAACAAGCTCT+TGG | 0.491850 | 5.3:-79218557 | MS.gene38173:CDS |
| CCAAACACCTTTCACATCAA+AGG | 0.498315 | 5.3:+79218200 | None:intergenic |
| ATGGAGGAAAGCTTGAAACT+TGG | 0.498400 | 5.3:-79218171 | MS.gene38173:CDS |
| TTGCACAAATATCTCTAAGA+TGG | 0.499975 | 5.3:-79217785 | MS.gene38173:CDS |
| TCTTGGAGAGGCTTTGAAAG+AGG | 0.506147 | 5.3:-79218540 | MS.gene38173:CDS |
| TGACTTACTTGATTGACTGC+TGG | 0.506233 | 5.3:+79218072 | None:intergenic |
| CTTTCTTACATGTGAAGTCA+GGG | 0.506502 | 5.3:+79218645 | None:intergenic |
| GAAGATGCCTGTGGTTGGAA+TGG | 0.535658 | 5.3:-79218675 | None:intergenic |
| AAAGAGATTGCAGATGCTCA+TGG | 0.540234 | 5.3:-79217816 | MS.gene38173:CDS |
| TCATAGAGGTCATTGAGGCC+TGG | 0.545875 | 5.3:+79217609 | None:intergenic |
| AAGATGCCTGTGGTTGGAAT+GGG | 0.555328 | 5.3:-79218674 | MS.gene38173:CDS |
| TGGCCACTTAGTTCTCAGCC+TGG | 0.559322 | 5.3:-79218261 | MS.gene38173:CDS |
| CTTTGATTGGTCATTGACAA+AGG | 0.559604 | 5.3:-79217691 | MS.gene38173:CDS |
| AGTCATCATAGAGGTCATTG+AGG | 0.576897 | 5.3:+79217604 | None:intergenic |
| AGGTGGAGATGAACCTTGCA+TGG | 0.584406 | 5.3:-79217956 | MS.gene38173:CDS |
| GCTGATCCCATTCCAACCAC+AGG | 0.587516 | 5.3:+79218668 | None:intergenic |
| ATCATTGAAGCCATCAAACA+AGG | 0.587661 | 5.3:-79218608 | MS.gene38173:CDS |
| GAAAGGTGTTTGGGAATCCA+TGG | 0.587744 | 5.3:-79218190 | MS.gene38173:CDS |
| CTAAGATGGCTATATGAACA+AGG | 0.588672 | 5.3:-79217771 | MS.gene38173:CDS |
| CTGCTTGCACCTTTCCTCAA+CGG | 0.589452 | 5.3:+79217873 | None:intergenic |
| TGCAAGCAGAGGACCAAATG+AGG | 0.592065 | 5.3:-79217859 | MS.gene38173:CDS |
| TTTCTTACATGTGAAGTCAG+GGG | 0.620409 | 5.3:+79218646 | None:intergenic |
| CAATTGAAGATGCCTGTGGT+TGG | 0.621459 | 5.3:-79218680 | None:intergenic |
| AGAGCAGGAATAACAAGATG+AGG | 0.624425 | 5.3:+79218446 | None:intergenic |
| CAGGAATAACAAGATGAGGA+TGG | 0.629084 | 5.3:+79218450 | None:intergenic |
| CTCAGAACAAGCTCTTGGAG+AGG | 0.635937 | 5.3:-79218552 | MS.gene38173:CDS |
| TTGAGGAAAGGTGCAAGCAG+AGG | 0.639249 | 5.3:-79217870 | MS.gene38173:CDS |
| TTTCCAGGCTGAGAACTAAG+TGG | 0.647166 | 5.3:+79218258 | None:intergenic |
| TGATTGGTCATTGACAAAGG+AGG | 0.655967 | 5.3:-79217688 | MS.gene38173:CDS |
| TAGTCAATTGAAGATGCCTG+TGG | 0.693349 | 5.3:-79218684 | None:intergenic |
| AGGTGTTTGGGAATCCATGG+AGG | 0.719619 | 5.3:-79218187 | MS.gene38173:CDS |
| ATTGACTGCTGGAAGAACAG+TGG | 0.720759 | 5.3:+79218083 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCAATATTACATTCATT+TGG | - | chr5.3:79217887-79217906 | MS.gene38173:CDS | 15.0% |
| !! | CTAAAAATTAATCTAAACTT+AGG | + | chr5.3:79218236-79218255 | None:intergenic | 15.0% |
| !! | AAAGTTTAGAAGTAACAAAA+AGG | + | chr5.3:79217790-79217809 | None:intergenic | 20.0% |
| !!! | TTGATTTGTTAATTTCATGT+AGG | - | chr5.3:79217950-79217969 | MS.gene38173:CDS | 20.0% |
| !!! | TTTTGTTACTTCTAAACTTT+GGG | - | chr5.3:79217790-79217809 | MS.gene38173:CDS | 20.0% |
| !!! | TTTTTGTTACTTCTAAACTT+TGG | - | chr5.3:79217789-79217808 | MS.gene38173:CDS | 20.0% |
| ! | AAAATTTGCGTATCTTTGAT+TGG | - | chr5.3:79218569-79218588 | MS.gene38173:CDS | 25.0% |
| ! | CAATGAACTCATAAATGTAT+AGG | - | chr5.3:79218297-79218316 | MS.gene38173:CDS | 25.0% |
| ! | TCAATATTACATTCATTTGG+AGG | - | chr5.3:79217890-79217909 | MS.gene38173:CDS | 25.0% |
| !! | AATCAAAGATACGCAAATTT+TGG | + | chr5.3:79218570-79218589 | None:intergenic | 25.0% |
| ATTGGAAATGAAAACTTTCC+AGG | + | chr5.3:79218033-79218052 | None:intergenic | 30.0% | |
| TGAACTCATAAATGTATAGG+TGG | - | chr5.3:79218300-79218319 | MS.gene38173:CDS | 30.0% | |
| TGGACTTGTATTTGATTCAT+TGG | - | chr5.3:79217992-79218011 | MS.gene38173:intron | 30.0% | |
| ! | GTTTTCATTTCCAATTGATG+TGG | - | chr5.3:79218038-79218057 | MS.gene38173:intron | 30.0% |
| ! | TTGCACAAATATCTCTAAGA+TGG | - | chr5.3:79218488-79218507 | MS.gene38173:CDS | 30.0% |
| AAAAGATCTGCCACATCAAT+TGG | + | chr5.3:79218051-79218070 | None:intergenic | 35.0% | |
| ATCATTGAAGCCATCAAACA+AGG | - | chr5.3:79217665-79217684 | MS.gene38173:CDS | 35.0% | |
| CAAACACCTTTCACATCAAA+GGG | + | chr5.3:79218075-79218094 | None:intergenic | 35.0% | |
| CTAAGATGGCTATATGAACA+AGG | - | chr5.3:79218502-79218521 | MS.gene38173:CDS | 35.0% | |
| CTTTCCTTATCATAGCTCTT+GGG | + | chr5.3:79218541-79218560 | None:intergenic | 35.0% | |
| CTTTCTTACATGTGAAGTCA+GGG | + | chr5.3:79217631-79217650 | None:intergenic | 35.0% | |
| GACTCTTCAATTGGACTATT+TGG | - | chr5.3:79217972-79217991 | MS.gene38173:intron | 35.0% | |
| TCATTCTCCATAACCTCATT+TGG | + | chr5.3:79218430-79218449 | None:intergenic | 35.0% | |
| TCTTTCCTTATCATAGCTCT+TGG | + | chr5.3:79218542-79218561 | None:intergenic | 35.0% | |
| TCTTTCTTACATGTGAAGTC+AGG | + | chr5.3:79217632-79217651 | None:intergenic | 35.0% | |
| TTCATGTAGGACTCTTCAAT+TGG | - | chr5.3:79217963-79217982 | MS.gene38173:intron | 35.0% | |
| TTGAAAGAGGCAATTGAACT+TGG | - | chr5.3:79217746-79217765 | MS.gene38173:CDS | 35.0% | |
| TTGCATTGCAAAACTCTCTA+AGG | + | chr5.3:79218354-79218373 | None:intergenic | 35.0% | |
| TTTCTTACATGTGAAGTCAG+GGG | + | chr5.3:79217630-79217649 | None:intergenic | 35.0% | |
| ! | AGAGAGTTTTGCAATGCAAA+TGG | - | chr5.3:79218355-79218374 | MS.gene38173:intron | 35.0% |
| ! | CTTTGATTGGTCATTGACAA+AGG | - | chr5.3:79218582-79218601 | MS.gene38173:CDS | 35.0% |
| ! | GTGTCTATAACCTTGTTTGA+TGG | + | chr5.3:79217678-79217697 | None:intergenic | 35.0% |
| !! | CTTTGATGTGAAAGGTGTTT+GGG | - | chr5.3:79218074-79218093 | MS.gene38173:intron | 35.0% |
| !! | TTGAGAGATTTTTGAAGAGC+AGG | + | chr5.3:79217845-79217864 | None:intergenic | 35.0% |
| AAAGAGATTGCAGATGCTCA+TGG | - | chr5.3:79218457-79218476 | MS.gene38173:CDS | 40.0% | |
| AAGCAAAATCGTTTGATCCC+TGG | - | chr5.3:79218631-79218650 | MS.gene38173:CDS | 40.0% | |
| AAGTTTCAAGCTTTCCTCCA+TGG | + | chr5.3:79218103-79218122 | None:intergenic | 40.0% | |
| AGAGCAGGAATAACAAGATG+AGG | + | chr5.3:79217830-79217849 | None:intergenic | 40.0% | |
| AGTCATCATAGAGGTCATTG+AGG | + | chr5.3:79218672-79218691 | None:intergenic | 40.0% | |
| ATGGAGGAAAGCTTGAAACT+TGG | - | chr5.3:79218102-79218121 | MS.gene38173:CDS | 40.0% | |
| CAGGAATAACAAGATGAGGA+TGG | + | chr5.3:79217826-79217845 | None:intergenic | 40.0% | |
| CCAAACACCTTTCACATCAA+AGG | + | chr5.3:79218076-79218095 | None:intergenic | 40.0% | |
| CTTGGACTGACTAAAGCTAT+TGG | - | chr5.3:79218120-79218139 | MS.gene38173:CDS | 40.0% | |
| TGACTTACTTGATTGACTGC+TGG | + | chr5.3:79218204-79218223 | None:intergenic | 40.0% | |
| TGTTCCCAAGAGCTATGATA+AGG | - | chr5.3:79218534-79218553 | MS.gene38173:CDS | 40.0% | |
| TTTGATACTGCTGCTGCATA+TGG | - | chr5.3:79217698-79217717 | MS.gene38173:CDS | 40.0% | |
| ! | CTTTTGCCCTTTGATGTGAA+AGG | - | chr5.3:79218066-79218085 | MS.gene38173:intron | 40.0% |
| ! | TGATTGGTCATTGACAAAGG+AGG | - | chr5.3:79218585-79218604 | MS.gene38173:CDS | 40.0% |
| !! | CCTTTGATGTGAAAGGTGTT+TGG | - | chr5.3:79218073-79218092 | MS.gene38173:intron | 40.0% |
| ATTGACTGCTGGAAGAACAG+TGG | + | chr5.3:79218193-79218212 | None:intergenic | 45.0% | |
| CAGAGGACCAAATGAGGTTA+TGG | - | chr5.3:79218420-79218439 | MS.gene38173:intron | 45.0% | |
| TATGGCTCAGAACAAGCTCT+TGG | - | chr5.3:79217716-79217735 | MS.gene38173:CDS | 45.0% | |
| TTTCCAGGCTGAGAACTAAG+TGG | + | chr5.3:79218018-79218037 | None:intergenic | 45.0% | |
| ! | GGTTCTTTTGTTGCCATGCA+AGG | + | chr5.3:79218333-79218352 | None:intergenic | 45.0% |
| !! | GAAAGGTGTTTGGGAATCCA+TGG | - | chr5.3:79218083-79218102 | MS.gene38173:CDS | 45.0% |
| !! | TCTTGGAGAGGCTTTGAAAG+AGG | - | chr5.3:79217733-79217752 | MS.gene38173:CDS | 45.0% |
| AGGTGGAGATGAACCTTGCA+TGG | - | chr5.3:79218317-79218336 | MS.gene38173:intron | 50.0% | |
| AGGTGTTTGGGAATCCATGG+AGG | - | chr5.3:79218086-79218105 | MS.gene38173:CDS | 50.0% | |
| CTCAGAACAAGCTCTTGGAG+AGG | - | chr5.3:79217721-79217740 | MS.gene38173:CDS | 50.0% | |
| CTGCTTGCACCTTTCCTCAA+CGG | + | chr5.3:79218403-79218422 | None:intergenic | 50.0% | |
| TCATAGAGGTCATTGAGGCC+TGG | + | chr5.3:79218667-79218686 | None:intergenic | 50.0% | |
| TGCAAGCAGAGGACCAAATG+AGG | - | chr5.3:79218414-79218433 | MS.gene38173:intron | 50.0% | |
| ! | TAACTGCGTTTTCGCCGTTG+AGG | - | chr5.3:79218386-79218405 | MS.gene38173:intron | 50.0% |
| ! | TTGAGGAAAGGTGCAAGCAG+AGG | - | chr5.3:79218403-79218422 | MS.gene38173:intron | 50.0% |
| GCTGATCCCATTCCAACCAC+AGG | + | chr5.3:79217608-79217627 | None:intergenic | 55.0% | |
| ! | GCGTTTTCGCCGTTGAGGAA+AGG | - | chr5.3:79218391-79218410 | MS.gene38173:intron | 55.0% |
| ! | TGGCCACTTAGTTCTCAGCC+TGG | - | chr5.3:79218012-79218031 | MS.gene38173:intron | 55.0% |
| !! | TCATTGAGGCCTGGCTTGGT+TGG | + | chr5.3:79218658-79218677 | None:intergenic | 55.0% |
| ATCCCTGGACCAACCAAGCC+AGG | - | chr5.3:79218646-79218665 | MS.gene38173:CDS | 60.0% | |
| GAGGTCATTGAGGCCTGGCT+TGG | + | chr5.3:79218662-79218681 | None:intergenic | 60.0% | |
| !! | AGGCCTGGCTTGGTTGGTCC+AGG | + | chr5.3:79218652-79218671 | None:intergenic | 65.0% |
| !! | GGCCTGGCTTGGTTGGTCCA+GGG | + | chr5.3:79218651-79218670 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 79217602 | 79218693 | 79217602 | ID=MS.gene38173 |
| chr5.3 | mRNA | 79217602 | 79218693 | 79217602 | ID=MS.gene38173.t1;Parent=MS.gene38173 |
| chr5.3 | exon | 79218431 | 79218693 | 79218431 | ID=MS.gene38173.t1.exon1;Parent=MS.gene38173.t1 |
| chr5.3 | CDS | 79218431 | 79218693 | 79218431 | ID=cds.MS.gene38173.t1;Parent=MS.gene38173.t1 |
| chr5.3 | exon | 79218080 | 79218323 | 79218080 | ID=MS.gene38173.t1.exon2;Parent=MS.gene38173.t1 |
| chr5.3 | CDS | 79218080 | 79218323 | 79218080 | ID=cds.MS.gene38173.t1;Parent=MS.gene38173.t1 |
| chr5.3 | exon | 79217602 | 79217976 | 79217602 | ID=MS.gene38173.t1.exon3;Parent=MS.gene38173.t1 |
| chr5.3 | CDS | 79217602 | 79217976 | 79217602 | ID=cds.MS.gene38173.t1;Parent=MS.gene38173.t1 |
| Gene Sequence |
| Protein sequence |
