Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26294.t1 | XP_003615981.1 | 94.8 | 324 | 15 | 1 | 1 | 324 | 1 | 322 | 1.50E-174 | 622.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26294.t1 | P22195 | 58.5 | 311 | 123 | 4 | 14 | 323 | 11 | 316 | 1.2e-95 | 351.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26294.t1 | G7KFK8 | 94.8 | 324 | 15 | 1 | 1 | 324 | 1 | 322 | 1.1e-174 | 622.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04926 | MS.gene26294 | 0.82055 | 6.46E-53 | -1.69E-46 |
| MS.gene049549 | MS.gene26294 | 0.832206 | 1.08E-55 | -1.69E-46 |
| MS.gene050095 | MS.gene26294 | 0.826332 | 2.88E-54 | -1.69E-46 |
| MS.gene050096 | MS.gene26294 | 0.822746 | 2.01E-53 | -1.69E-46 |
| MS.gene050479 | MS.gene26294 | 0.809664 | 1.69E-50 | -1.69E-46 |
| MS.gene050547 | MS.gene26294 | 0.811464 | 6.91E-51 | -1.69E-46 |
| MS.gene050720 | MS.gene26294 | 0.817156 | 3.82E-52 | -1.69E-46 |
| MS.gene051131 | MS.gene26294 | 0.806402 | 8.37E-50 | -1.69E-46 |
| MS.gene051996 | MS.gene26294 | 0.804293 | 2.32E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene26294 | 0.839505 | 1.52E-57 | -1.69E-46 |
| MS.gene052212 | MS.gene26294 | 0.811151 | 8.08E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene26294 | 0.831334 | 1.77E-55 | -1.69E-46 |
| MS.gene052501 | MS.gene26294 | -0.800624 | 1.32E-48 | -1.69E-46 |
| MS.gene052505 | MS.gene26294 | -0.800186 | 1.62E-48 | -1.69E-46 |
| MS.gene052606 | MS.gene26294 | 0.800747 | 1.25E-48 | -1.69E-46 |
| MS.gene053403 | MS.gene26294 | 0.806493 | 8.01E-50 | -1.69E-46 |
| MS.gene053406 | MS.gene26294 | 0.862688 | 4.24E-64 | -1.69E-46 |
| MS.gene053887 | MS.gene26294 | 0.814042 | 1.88E-51 | -1.69E-46 |
| MS.gene054146 | MS.gene26294 | 0.842095 | 3.19E-58 | -1.69E-46 |
| MS.gene054147 | MS.gene26294 | 0.825803 | 3.84E-54 | -1.69E-46 |
| MS.gene054277 | MS.gene26294 | 0.84481 | 6.00E-59 | -1.69E-46 |
| MS.gene054742 | MS.gene26294 | 0.855501 | 6.05E-62 | -1.69E-46 |
| MS.gene05483 | MS.gene26294 | 0.802481 | 5.50E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene26294 | 0.810711 | 1.01E-50 | -1.69E-46 |
| MS.gene055154 | MS.gene26294 | 0.803126 | 4.04E-49 | -1.69E-46 |
| MS.gene055240 | MS.gene26294 | 0.838212 | 3.29E-57 | -1.69E-46 |
| MS.gene055289 | MS.gene26294 | -0.801258 | 9.80E-49 | -1.69E-46 |
| MS.gene055601 | MS.gene26294 | 0.818093 | 2.35E-52 | -1.69E-46 |
| MS.gene056076 | MS.gene26294 | 0.846182 | 2.55E-59 | -1.69E-46 |
| MS.gene056330 | MS.gene26294 | 0.820998 | 5.10E-53 | -1.69E-46 |
| MS.gene056590 | MS.gene26294 | 0.803249 | 3.82E-49 | -1.69E-46 |
| MS.gene056591 | MS.gene26294 | 0.802157 | 6.41E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene26294 | 0.811922 | 5.49E-51 | -1.69E-46 |
| MS.gene056748 | MS.gene26294 | 0.823995 | 1.03E-53 | -1.69E-46 |
| MS.gene056899 | MS.gene26294 | 0.801868 | 7.35E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene26294 | 0.860644 | 1.79E-63 | -1.69E-46 |
| MS.gene056922 | MS.gene26294 | 0.832443 | 9.43E-56 | -1.69E-46 |
| MS.gene057261 | MS.gene26294 | 0.80939 | 1.94E-50 | -1.69E-46 |
| MS.gene057544 | MS.gene26294 | 0.820876 | 5.44E-53 | -1.69E-46 |
| MS.gene057770 | MS.gene26294 | 0.803568 | 3.28E-49 | -1.69E-46 |
| MS.gene057820 | MS.gene26294 | 0.8133 | 2.74E-51 | -1.69E-46 |
| MS.gene058603 | MS.gene26294 | 0.810849 | 9.39E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene26294 | -0.803029 | 4.24E-49 | -1.69E-46 |
| MS.gene059891 | MS.gene26294 | 0.81003 | 1.41E-50 | -1.69E-46 |
| MS.gene059892 | MS.gene26294 | 0.809938 | 1.48E-50 | -1.69E-46 |
| MS.gene059953 | MS.gene26294 | 0.82031 | 7.34E-53 | -1.69E-46 |
| MS.gene059955 | MS.gene26294 | 0.821511 | 3.88E-53 | -1.69E-46 |
| MS.gene060087 | MS.gene26294 | 0.837797 | 4.20E-57 | -1.69E-46 |
| MS.gene061038 | MS.gene26294 | 0.807505 | 4.89E-50 | -1.69E-46 |
| MS.gene061092 | MS.gene26294 | 0.806175 | 9.34E-50 | -1.69E-46 |
| MS.gene061094 | MS.gene26294 | 0.805329 | 1.41E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26294.t1 | MTR_5g074760 | 94.753 | 324 | 15 | 1 | 1 | 324 | 1 | 322 | 0.0 | 628 |
| MS.gene26294.t1 | MTR_5g074740 | 93.231 | 325 | 20 | 1 | 1 | 325 | 1 | 323 | 0.0 | 621 |
| MS.gene26294.t1 | MTR_5g074710 | 87.077 | 325 | 40 | 1 | 1 | 325 | 1 | 323 | 0.0 | 589 |
| MS.gene26294.t1 | MTR_5g074860 | 71.924 | 317 | 89 | 0 | 6 | 322 | 8 | 324 | 3.65e-173 | 483 |
| MS.gene26294.t1 | MTR_3g467600 | 65.300 | 317 | 107 | 2 | 8 | 323 | 10 | 324 | 2.70e-146 | 415 |
| MS.gene26294.t1 | MTR_5g074860 | 62.145 | 317 | 81 | 1 | 6 | 322 | 8 | 285 | 1.27e-140 | 399 |
| MS.gene26294.t1 | MTR_5g074700 | 86.283 | 226 | 17 | 1 | 100 | 325 | 5 | 216 | 8.91e-140 | 394 |
| MS.gene26294.t1 | MTR_4g029170 | 59.385 | 325 | 126 | 4 | 1 | 323 | 1 | 321 | 3.53e-130 | 374 |
| MS.gene26294.t1 | MTR_4g029180 | 63.514 | 296 | 102 | 4 | 30 | 323 | 30 | 321 | 5.39e-126 | 363 |
| MS.gene26294.t1 | MTR_5g074970 | 56.151 | 317 | 129 | 7 | 12 | 323 | 15 | 326 | 5.76e-120 | 348 |
| MS.gene26294.t1 | MTR_3g466200 | 56.958 | 309 | 124 | 7 | 19 | 323 | 17 | 320 | 7.52e-120 | 348 |
| MS.gene26294.t1 | MTR_3g072190 | 55.799 | 319 | 133 | 5 | 8 | 323 | 5 | 318 | 1.53e-118 | 344 |
| MS.gene26294.t1 | MTR_5g083860 | 54.403 | 318 | 137 | 5 | 9 | 323 | 13 | 325 | 2.22e-115 | 337 |
| MS.gene26294.t1 | MTR_2g084080 | 55.873 | 315 | 132 | 7 | 10 | 323 | 9 | 317 | 3.41e-115 | 336 |
| MS.gene26294.t1 | MTR_3g094650 | 54.545 | 319 | 136 | 6 | 9 | 323 | 9 | 322 | 3.62e-114 | 333 |
| MS.gene26294.t1 | MTR_4g029200 | 54.808 | 312 | 135 | 5 | 13 | 323 | 32 | 338 | 4.17e-114 | 334 |
| MS.gene26294.t1 | MTR_2g084020 | 54.012 | 324 | 142 | 6 | 1 | 323 | 1 | 318 | 4.74e-114 | 333 |
| MS.gene26294.t1 | MTR_2g084010 | 53.704 | 324 | 143 | 5 | 1 | 323 | 1 | 318 | 8.35e-114 | 332 |
| MS.gene26294.t1 | MTR_2g084110 | 55.663 | 309 | 131 | 6 | 16 | 323 | 14 | 317 | 6.92e-112 | 327 |
| MS.gene26294.t1 | MTR_2g084090 | 54.259 | 317 | 137 | 7 | 10 | 323 | 7 | 318 | 1.12e-111 | 327 |
| MS.gene26294.t1 | MTR_2g084000 | 52.830 | 318 | 143 | 6 | 8 | 323 | 7 | 319 | 3.71e-111 | 325 |
| MS.gene26294.t1 | MTR_1g115900 | 54.934 | 304 | 129 | 6 | 23 | 323 | 23 | 321 | 3.95e-111 | 326 |
| MS.gene26294.t1 | MTR_3g094670 | 55.031 | 318 | 135 | 6 | 9 | 323 | 10 | 322 | 1.96e-108 | 319 |
| MS.gene26294.t1 | MTR_7g072510 | 51.582 | 316 | 144 | 5 | 9 | 323 | 5 | 312 | 7.54e-108 | 317 |
| MS.gene26294.t1 | MTR_3g094630 | 56.494 | 308 | 126 | 5 | 19 | 323 | 20 | 322 | 1.47e-107 | 317 |
| MS.gene26294.t1 | MTR_7g072480 | 53.968 | 315 | 138 | 5 | 10 | 323 | 8 | 316 | 2.92e-107 | 315 |
| MS.gene26294.t1 | MTR_4g029190 | 50.625 | 320 | 148 | 7 | 9 | 323 | 26 | 340 | 4.79e-104 | 308 |
| MS.gene26294.t1 | MTR_3g466180 | 53.165 | 316 | 142 | 4 | 9 | 323 | 13 | 323 | 1.07e-103 | 307 |
| MS.gene26294.t1 | MTR_4g083710 | 49.375 | 320 | 153 | 6 | 9 | 323 | 9 | 324 | 1.13e-103 | 307 |
| MS.gene26294.t1 | MTR_7g026990 | 49.216 | 319 | 155 | 7 | 6 | 323 | 10 | 322 | 3.75e-103 | 305 |
| MS.gene26294.t1 | MTR_5g021060 | 52.131 | 305 | 134 | 5 | 27 | 323 | 30 | 330 | 2.03e-102 | 304 |
| MS.gene26294.t1 | MTR_8g076820 | 51.148 | 305 | 137 | 5 | 27 | 323 | 30 | 330 | 1.48e-99 | 296 |
| MS.gene26294.t1 | MTR_4g074995 | 48.580 | 317 | 141 | 7 | 12 | 323 | 9 | 308 | 1.66e-96 | 288 |
| MS.gene26294.t1 | MTR_3g072190 | 57.255 | 255 | 103 | 4 | 70 | 323 | 2 | 251 | 1.03e-95 | 284 |
| MS.gene26294.t1 | MTR_7g093370 | 45.538 | 325 | 165 | 5 | 8 | 323 | 50 | 371 | 4.65e-95 | 286 |
| MS.gene26294.t1 | MTR_2g029560 | 45.921 | 331 | 165 | 6 | 1 | 323 | 1 | 325 | 8.86e-95 | 285 |
| MS.gene26294.t1 | MTR_4g125940 | 48.494 | 332 | 153 | 8 | 4 | 324 | 6 | 330 | 9.17e-94 | 282 |
| MS.gene26294.t1 | MTR_2g028980 | 46.769 | 325 | 162 | 5 | 8 | 324 | 10 | 331 | 1.05e-93 | 282 |
| MS.gene26294.t1 | MTR_1g022970 | 47.541 | 305 | 149 | 4 | 27 | 323 | 46 | 347 | 2.62e-92 | 278 |
| MS.gene26294.t1 | MTR_1g054205 | 45.223 | 314 | 160 | 5 | 19 | 323 | 16 | 326 | 3.04e-91 | 275 |
| MS.gene26294.t1 | MTR_2g040000 | 47.634 | 317 | 150 | 7 | 18 | 323 | 20 | 331 | 4.34e-91 | 275 |
| MS.gene26294.t1 | MTR_5g017850 | 48.485 | 330 | 153 | 10 | 3 | 323 | 5 | 326 | 4.41e-91 | 275 |
| MS.gene26294.t1 | MTR_2g029800 | 48.534 | 307 | 147 | 5 | 25 | 323 | 27 | 330 | 1.02e-90 | 275 |
| MS.gene26294.t1 | MTR_2g029830 | 46.906 | 307 | 152 | 5 | 25 | 323 | 26 | 329 | 8.07e-90 | 273 |
| MS.gene26294.t1 | MTR_4g074990 | 45.820 | 323 | 148 | 7 | 8 | 323 | 3 | 305 | 1.55e-89 | 270 |
| MS.gene26294.t1 | MTR_5g017860 | 47.432 | 331 | 155 | 11 | 3 | 323 | 5 | 326 | 3.36e-89 | 270 |
| MS.gene26294.t1 | MTR_2g029815 | 44.308 | 325 | 167 | 5 | 7 | 323 | 12 | 330 | 7.66e-89 | 270 |
| MS.gene26294.t1 | MTR_4g122640 | 46.580 | 307 | 154 | 6 | 23 | 323 | 34 | 336 | 2.76e-88 | 268 |
| MS.gene26294.t1 | MTR_2g029860 | 45.603 | 307 | 156 | 4 | 25 | 323 | 27 | 330 | 9.27e-88 | 267 |
| MS.gene26294.t1 | MTR_4g030890 | 47.386 | 306 | 147 | 5 | 25 | 323 | 98 | 396 | 9.85e-88 | 269 |
| MS.gene26294.t1 | MTR_4g031140 | 44.648 | 327 | 167 | 5 | 4 | 323 | 5 | 324 | 1.71e-87 | 266 |
| MS.gene26294.t1 | MTR_2g029730 | 46.032 | 315 | 159 | 5 | 17 | 323 | 15 | 326 | 2.44e-87 | 266 |
| MS.gene26294.t1 | MTR_2g029820 | 45.928 | 307 | 155 | 4 | 25 | 323 | 27 | 330 | 4.60e-87 | 265 |
| MS.gene26294.t1 | MTR_4g125940 | 52.330 | 279 | 118 | 6 | 56 | 324 | 2 | 275 | 1.46e-86 | 261 |
| MS.gene26294.t1 | MTR_2g029740 | 43.865 | 326 | 168 | 5 | 7 | 324 | 13 | 331 | 2.27e-85 | 261 |
| MS.gene26294.t1 | MTR_5g014100 | 47.419 | 310 | 146 | 6 | 27 | 323 | 26 | 331 | 4.69e-85 | 259 |
| MS.gene26294.t1 | MTR_5g049280 | 46.602 | 309 | 151 | 8 | 26 | 323 | 32 | 337 | 7.25e-85 | 259 |
| MS.gene26294.t1 | MTR_2g029910 | 45.981 | 311 | 154 | 6 | 25 | 325 | 28 | 334 | 6.43e-84 | 257 |
| MS.gene26294.t1 | MTR_4g074980 | 45.000 | 320 | 144 | 8 | 8 | 323 | 3 | 294 | 6.63e-84 | 255 |
| MS.gene26294.t1 | MTR_2g029750 | 44.648 | 327 | 164 | 7 | 7 | 324 | 13 | 331 | 8.78e-84 | 257 |
| MS.gene26294.t1 | MTR_1g101830 | 45.342 | 322 | 157 | 11 | 12 | 323 | 10 | 322 | 6.32e-82 | 251 |
| MS.gene26294.t1 | MTR_2g029850 | 44.951 | 307 | 158 | 5 | 25 | 323 | 27 | 330 | 2.93e-81 | 251 |
| MS.gene26294.t1 | MTR_1g077000 | 44.966 | 298 | 154 | 7 | 27 | 323 | 39 | 327 | 9.83e-81 | 248 |
| MS.gene26294.t1 | MTR_3g092990 | 43.506 | 308 | 160 | 6 | 25 | 323 | 24 | 326 | 5.07e-79 | 244 |
| MS.gene26294.t1 | MTR_1g038680 | 42.763 | 304 | 159 | 7 | 31 | 323 | 33 | 332 | 2.85e-76 | 237 |
| MS.gene26294.t1 | MTR_1g086490 | 41.018 | 334 | 176 | 6 | 9 | 325 | 13 | 342 | 9.42e-76 | 236 |
| MS.gene26294.t1 | MTR_4g046713 | 40.964 | 332 | 181 | 8 | 1 | 323 | 1 | 326 | 6.10e-75 | 233 |
| MS.gene26294.t1 | MTR_1g086320 | 40.491 | 326 | 178 | 6 | 9 | 323 | 13 | 333 | 1.17e-74 | 233 |
| MS.gene26294.t1 | MTR_0155s0040 | 42.000 | 300 | 164 | 8 | 25 | 323 | 25 | 315 | 1.91e-74 | 232 |
| MS.gene26294.t1 | MTR_2g088770 | 42.515 | 334 | 172 | 12 | 1 | 323 | 1 | 325 | 2.63e-74 | 232 |
| MS.gene26294.t1 | MTR_4g074980 | 48.031 | 254 | 121 | 6 | 8 | 253 | 3 | 253 | 1.41e-73 | 228 |
| MS.gene26294.t1 | MTR_2g029830 | 47.490 | 259 | 125 | 5 | 73 | 323 | 6 | 261 | 2.19e-71 | 223 |
| MS.gene26294.t1 | MTR_8g075100 | 40.984 | 305 | 161 | 8 | 27 | 323 | 26 | 319 | 1.54e-67 | 214 |
| MS.gene26294.t1 | MTR_3g092990 | 41.234 | 308 | 156 | 7 | 25 | 323 | 24 | 315 | 2.44e-67 | 214 |
| MS.gene26294.t1 | MTR_1g025980 | 39.432 | 317 | 176 | 8 | 10 | 318 | 7 | 315 | 2.53e-67 | 214 |
| MS.gene26294.t1 | MTR_5g022870 | 39.628 | 323 | 170 | 9 | 9 | 323 | 11 | 316 | 7.83e-67 | 212 |
| MS.gene26294.t1 | MTR_6g027440 | 37.500 | 320 | 187 | 6 | 9 | 323 | 3 | 314 | 8.31e-66 | 210 |
| MS.gene26294.t1 | MTR_7g107520 | 41.176 | 306 | 161 | 8 | 27 | 323 | 25 | 320 | 4.54e-65 | 208 |
| MS.gene26294.t1 | MTR_7g029030 | 40.683 | 322 | 177 | 9 | 9 | 323 | 6 | 320 | 1.01e-64 | 207 |
| MS.gene26294.t1 | MTR_2g008710 | 39.634 | 328 | 175 | 10 | 9 | 323 | 8 | 325 | 3.31e-64 | 206 |
| MS.gene26294.t1 | MTR_4g133800 | 40.461 | 304 | 159 | 11 | 31 | 325 | 45 | 335 | 1.06e-62 | 202 |
| MS.gene26294.t1 | MTR_1g009750 | 40.000 | 310 | 167 | 9 | 26 | 323 | 26 | 328 | 1.24e-62 | 202 |
| MS.gene26294.t1 | MTR_2g437770 | 41.639 | 305 | 157 | 10 | 27 | 323 | 50 | 341 | 3.68e-61 | 199 |
| MS.gene26294.t1 | MTR_5g016010 | 37.994 | 329 | 183 | 9 | 6 | 319 | 3 | 325 | 4.49e-61 | 198 |
| MS.gene26294.t1 | MTR_8g062780 | 38.154 | 325 | 186 | 6 | 11 | 325 | 7 | 326 | 4.87e-61 | 198 |
| MS.gene26294.t1 | MTR_7g086820 | 37.299 | 311 | 179 | 8 | 20 | 324 | 13 | 313 | 1.69e-60 | 196 |
| MS.gene26294.t1 | MTR_4g114210 | 38.182 | 330 | 178 | 10 | 10 | 323 | 1 | 320 | 3.15e-60 | 196 |
| MS.gene26294.t1 | MTR_4g087965 | 40.065 | 307 | 166 | 9 | 26 | 319 | 41 | 342 | 4.02e-59 | 193 |
| MS.gene26294.t1 | MTR_4g127670 | 39.550 | 311 | 165 | 9 | 26 | 323 | 23 | 323 | 1.76e-58 | 191 |
| MS.gene26294.t1 | MTR_4g095450 | 38.110 | 328 | 186 | 9 | 1 | 319 | 1 | 320 | 1.15e-57 | 189 |
| MS.gene26294.t1 | MTR_1g090760 | 34.954 | 329 | 198 | 7 | 8 | 325 | 9 | 332 | 2.16e-57 | 189 |
| MS.gene26294.t1 | MTR_7g086870 | 37.793 | 299 | 175 | 8 | 27 | 323 | 22 | 311 | 2.73e-57 | 187 |
| MS.gene26294.t1 | MTR_3g072210 | 52.660 | 188 | 84 | 4 | 138 | 323 | 54 | 238 | 4.88e-57 | 184 |
| MS.gene26294.t1 | MTR_2g099175 | 36.538 | 312 | 175 | 9 | 26 | 324 | 35 | 336 | 8.40e-56 | 184 |
| MS.gene26294.t1 | MTR_2g008160 | 38.291 | 316 | 164 | 9 | 25 | 323 | 22 | 323 | 5.99e-55 | 182 |
| MS.gene26294.t1 | MTR_2g078610 | 36.095 | 338 | 170 | 9 | 25 | 322 | 74 | 405 | 1.75e-54 | 183 |
| MS.gene26294.t1 | MTR_2g077990 | 36.391 | 338 | 169 | 9 | 25 | 322 | 74 | 405 | 5.23e-54 | 182 |
| MS.gene26294.t1 | MTR_0286s0010 | 35.802 | 324 | 190 | 9 | 12 | 323 | 17 | 334 | 2.00e-53 | 178 |
| MS.gene26294.t1 | MTR_6g008075 | 35.802 | 324 | 190 | 9 | 12 | 323 | 17 | 334 | 2.00e-53 | 178 |
| MS.gene26294.t1 | MTR_2g067440 | 36.012 | 336 | 170 | 9 | 25 | 322 | 58 | 386 | 8.90e-53 | 178 |
| MS.gene26294.t1 | MTR_6g043240 | 36.061 | 330 | 185 | 12 | 8 | 323 | 14 | 331 | 1.74e-52 | 176 |
| MS.gene26294.t1 | MTR_6g043280 | 35.179 | 307 | 185 | 10 | 22 | 323 | 35 | 332 | 2.56e-51 | 173 |
| MS.gene26294.t1 | MTR_4g132490 | 31.803 | 305 | 196 | 5 | 26 | 323 | 28 | 327 | 6.92e-51 | 171 |
| MS.gene26294.t1 | MTR_1g009750 | 36.452 | 310 | 161 | 9 | 26 | 323 | 26 | 311 | 1.48e-50 | 170 |
| MS.gene26294.t1 | MTR_1g066710 | 35.082 | 305 | 186 | 7 | 25 | 323 | 25 | 323 | 1.54e-50 | 171 |
| MS.gene26294.t1 | MTR_0147s0010 | 33.951 | 324 | 167 | 8 | 27 | 322 | 77 | 381 | 3.77e-50 | 171 |
| MS.gene26294.t1 | MTR_2g078280 | 36.308 | 325 | 161 | 9 | 25 | 309 | 74 | 392 | 4.76e-49 | 169 |
| MS.gene26294.t1 | MTR_1g066380 | 34.314 | 306 | 189 | 7 | 24 | 323 | 24 | 323 | 2.18e-48 | 165 |
| MS.gene26294.t1 | MTR_3g105790 | 35.759 | 316 | 184 | 6 | 20 | 325 | 18 | 324 | 3.02e-48 | 164 |
| MS.gene26294.t1 | MTR_6g043460 | 36.093 | 302 | 181 | 9 | 22 | 319 | 31 | 324 | 2.30e-47 | 163 |
| MS.gene26294.t1 | MTR_1g066640 | 34.426 | 305 | 188 | 7 | 25 | 323 | 25 | 323 | 3.60e-47 | 162 |
| MS.gene26294.t1 | MTR_5g033470 | 32.581 | 310 | 191 | 8 | 27 | 323 | 73 | 377 | 1.88e-46 | 161 |
| MS.gene26294.t1 | MTR_2g008730 | 41.700 | 247 | 125 | 8 | 89 | 323 | 62 | 301 | 2.44e-46 | 159 |
| MS.gene26294.t1 | MTR_1g066680 | 33.770 | 305 | 189 | 8 | 25 | 323 | 25 | 322 | 5.31e-45 | 156 |
| MS.gene26294.t1 | MTR_2g067450 | 35.783 | 313 | 174 | 10 | 25 | 322 | 9 | 309 | 1.04e-44 | 155 |
| MS.gene26294.t1 | MTR_7g072490 | 42.041 | 245 | 82 | 7 | 73 | 316 | 2 | 187 | 7.46e-44 | 150 |
| MS.gene26294.t1 | MTR_3g072260 | 65.455 | 110 | 37 | 1 | 26 | 135 | 25 | 133 | 3.92e-43 | 145 |
| MS.gene26294.t1 | MTR_4g132110 | 31.138 | 334 | 212 | 7 | 3 | 324 | 2 | 329 | 5.79e-43 | 151 |
| MS.gene26294.t1 | MTR_2g008160 | 35.161 | 310 | 147 | 9 | 25 | 323 | 22 | 288 | 1.33e-42 | 149 |
| MS.gene26294.t1 | MTR_4g132110 | 30.564 | 337 | 215 | 7 | 3 | 324 | 2 | 334 | 6.60e-41 | 145 |
| MS.gene26294.t1 | MTR_2g008160 | 44.633 | 177 | 91 | 5 | 25 | 201 | 22 | 191 | 7.49e-40 | 139 |
| MS.gene26294.t1 | MTR_5g074770 | 57.143 | 112 | 43 | 1 | 211 | 322 | 2 | 108 | 1.27e-38 | 133 |
| MS.gene26294.t1 | MTR_2g029880 | 40.957 | 188 | 95 | 3 | 145 | 325 | 12 | 190 | 1.08e-37 | 134 |
| MS.gene26294.t1 | MTR_1g066380 | 32.819 | 259 | 162 | 7 | 71 | 323 | 3 | 255 | 1.92e-35 | 129 |
| MS.gene26294.t1 | MTR_3g105790 | 36.667 | 240 | 137 | 5 | 94 | 323 | 12 | 246 | 1.08e-32 | 122 |
| MS.gene26294.t1 | MTR_2g077980 | 29.749 | 279 | 145 | 10 | 89 | 322 | 11 | 283 | 8.47e-23 | 96.3 |
| MS.gene26294.t1 | MTR_3g462850 | 39.716 | 141 | 74 | 5 | 194 | 323 | 9 | 149 | 7.26e-21 | 87.8 |
| MS.gene26294.t1 | MTR_2g078560 | 30.568 | 229 | 116 | 7 | 133 | 322 | 95 | 319 | 3.66e-20 | 89.7 |
| MS.gene26294.t1 | MTR_4g031040 | 34.911 | 169 | 71 | 3 | 86 | 254 | 1 | 130 | 1.78e-19 | 83.6 |
| MS.gene26294.t1 | MTR_6g048160 | 56.164 | 73 | 27 | 3 | 66 | 138 | 22 | 89 | 8.66e-19 | 80.1 |
| MS.gene26294.t1 | MTR_5g058120 | 35.032 | 157 | 93 | 3 | 165 | 319 | 6 | 155 | 5.61e-18 | 82.4 |
| MS.gene26294.t1 | MTR_3g086710 | 60.000 | 60 | 24 | 0 | 13 | 72 | 5 | 64 | 1.24e-17 | 77.0 |
| MS.gene26294.t1 | MTR_4g114220 | 48.193 | 83 | 32 | 3 | 53 | 135 | 29 | 100 | 1.48e-17 | 78.6 |
| MS.gene26294.t1 | MTR_1g089005 | 40.000 | 120 | 64 | 3 | 27 | 140 | 15 | 132 | 1.93e-16 | 75.9 |
| MS.gene26294.t1 | MTR_2g029930 | 41.304 | 92 | 29 | 2 | 25 | 105 | 17 | 94 | 5.25e-15 | 70.5 |
| MS.gene26294.t1 | MTR_7g086790 | 30.851 | 188 | 111 | 7 | 74 | 260 | 17 | 186 | 1.35e-14 | 71.6 |
| MS.gene26294.t1 | MTR_1g098320 | 40.741 | 81 | 46 | 1 | 244 | 324 | 47 | 125 | 7.50e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26294.t1 | AT5G05340 | 56.291 | 302 | 124 | 5 | 25 | 323 | 28 | 324 | 4.78e-116 | 338 |
| MS.gene26294.t1 | AT5G58390 | 53.774 | 318 | 138 | 7 | 10 | 323 | 4 | 316 | 1.88e-104 | 308 |
| MS.gene26294.t1 | AT5G58400 | 49.688 | 320 | 150 | 7 | 8 | 323 | 13 | 325 | 3.11e-102 | 303 |
| MS.gene26294.t1 | AT2G18150 | 49.511 | 307 | 143 | 5 | 25 | 323 | 34 | 336 | 4.35e-102 | 303 |
| MS.gene26294.t1 | AT4G36430 | 50.814 | 307 | 139 | 6 | 25 | 323 | 28 | 330 | 1.12e-101 | 302 |
| MS.gene26294.t1 | AT5G66390 | 50.980 | 306 | 138 | 5 | 27 | 324 | 33 | 334 | 1.58e-100 | 299 |
| MS.gene26294.t1 | AT1G14550 | 50.476 | 315 | 147 | 7 | 14 | 323 | 11 | 321 | 4.36e-100 | 298 |
| MS.gene26294.t1 | AT2G18140 | 46.847 | 333 | 156 | 6 | 8 | 323 | 7 | 335 | 6.24e-99 | 295 |
| MS.gene26294.t1 | AT1G44970 | 48.534 | 307 | 147 | 5 | 25 | 323 | 43 | 346 | 7.13e-95 | 285 |
| MS.gene26294.t1 | AT1G14540 | 49.169 | 301 | 147 | 5 | 25 | 323 | 19 | 315 | 6.20e-94 | 281 |
| MS.gene26294.t1 | AT5G06720 | 44.136 | 324 | 170 | 4 | 8 | 323 | 13 | 333 | 1.49e-93 | 281 |
| MS.gene26294.t1 | AT3G50990 | 46.474 | 312 | 155 | 5 | 21 | 324 | 35 | 342 | 1.31e-92 | 279 |
| MS.gene26294.t1 | AT4G08770 | 48.408 | 314 | 149 | 6 | 20 | 323 | 17 | 327 | 5.68e-92 | 278 |
| MS.gene26294.t1 | AT5G06730 | 42.901 | 324 | 174 | 4 | 8 | 323 | 14 | 334 | 1.27e-90 | 275 |
| MS.gene26294.t1 | AT2G38390 | 48.052 | 308 | 148 | 5 | 25 | 323 | 29 | 333 | 4.64e-89 | 270 |
| MS.gene26294.t1 | AT5G19890 | 45.706 | 326 | 158 | 8 | 8 | 323 | 11 | 327 | 2.28e-88 | 268 |
| MS.gene26294.t1 | AT4G08780 | 47.134 | 314 | 153 | 6 | 20 | 323 | 17 | 327 | 2.30e-88 | 268 |
| MS.gene26294.t1 | AT2G38380 | 48.052 | 308 | 148 | 5 | 25 | 323 | 29 | 333 | 5.38e-88 | 268 |
| MS.gene26294.t1 | AT1G49570 | 45.723 | 339 | 152 | 10 | 8 | 319 | 13 | 346 | 9.65e-88 | 267 |
| MS.gene26294.t1 | AT3G49120 | 46.006 | 313 | 156 | 6 | 21 | 323 | 26 | 335 | 3.36e-86 | 263 |
| MS.gene26294.t1 | AT3G32980 | 46.602 | 309 | 152 | 6 | 25 | 323 | 29 | 334 | 4.37e-86 | 263 |
| MS.gene26294.t1 | AT3G49110 | 46.278 | 309 | 153 | 6 | 25 | 323 | 31 | 336 | 4.33e-85 | 260 |
| MS.gene26294.t1 | AT4G16270 | 46.512 | 301 | 145 | 7 | 32 | 323 | 55 | 348 | 2.59e-84 | 258 |
| MS.gene26294.t1 | AT2G35380 | 45.122 | 328 | 162 | 7 | 9 | 323 | 13 | 335 | 8.74e-82 | 251 |
| MS.gene26294.t1 | AT1G68850 | 44.660 | 309 | 156 | 7 | 27 | 323 | 30 | 335 | 1.54e-81 | 251 |
| MS.gene26294.t1 | AT5G51890 | 44.000 | 325 | 162 | 11 | 10 | 323 | 7 | 322 | 3.21e-80 | 247 |
| MS.gene26294.t1 | AT1G71695 | 43.974 | 307 | 163 | 6 | 21 | 323 | 38 | 339 | 7.42e-80 | 247 |
| MS.gene26294.t1 | AT5G19880 | 43.865 | 326 | 167 | 6 | 9 | 323 | 9 | 329 | 3.11e-79 | 244 |
| MS.gene26294.t1 | AT2G22420 | 40.994 | 322 | 175 | 6 | 10 | 324 | 7 | 320 | 3.11e-79 | 244 |
| MS.gene26294.t1 | AT3G01190 | 43.750 | 304 | 156 | 7 | 27 | 323 | 26 | 321 | 6.61e-75 | 233 |
| MS.gene26294.t1 | AT5G15180 | 42.025 | 326 | 174 | 8 | 7 | 323 | 10 | 329 | 2.85e-73 | 229 |
| MS.gene26294.t1 | AT5G42180 | 40.491 | 326 | 170 | 9 | 5 | 322 | 7 | 316 | 1.16e-72 | 227 |
| MS.gene26294.t1 | AT4G33420 | 42.617 | 298 | 161 | 7 | 27 | 323 | 37 | 325 | 2.27e-71 | 224 |
| MS.gene26294.t1 | AT4G11290 | 39.286 | 308 | 174 | 6 | 25 | 323 | 23 | 326 | 8.44e-71 | 223 |
| MS.gene26294.t1 | AT4G33420 | 42.617 | 298 | 161 | 7 | 27 | 323 | 84 | 372 | 1.05e-70 | 224 |
| MS.gene26294.t1 | AT1G05260 | 38.485 | 330 | 185 | 10 | 7 | 324 | 3 | 326 | 5.41e-70 | 221 |
| MS.gene26294.t1 | AT1G05240 | 41.667 | 300 | 158 | 7 | 30 | 319 | 29 | 321 | 2.74e-69 | 219 |
| MS.gene26294.t1 | AT1G05250 | 41.667 | 300 | 158 | 7 | 30 | 319 | 29 | 321 | 2.74e-69 | 219 |
| MS.gene26294.t1 | AT5G64120 | 43.000 | 300 | 154 | 8 | 31 | 323 | 39 | 328 | 3.19e-69 | 219 |
| MS.gene26294.t1 | AT3G21770 | 41.290 | 310 | 167 | 8 | 19 | 319 | 21 | 324 | 7.78e-69 | 218 |
| MS.gene26294.t1 | AT3G03670 | 37.615 | 327 | 182 | 9 | 8 | 323 | 6 | 321 | 2.18e-68 | 216 |
| MS.gene26294.t1 | AT5G17820 | 38.318 | 321 | 167 | 10 | 11 | 323 | 16 | 313 | 1.07e-63 | 204 |
| MS.gene26294.t1 | AT5G17820 | 38.318 | 321 | 167 | 10 | 11 | 323 | 69 | 366 | 9.73e-63 | 203 |
| MS.gene26294.t1 | AT1G30870 | 41.558 | 308 | 156 | 11 | 27 | 323 | 51 | 345 | 1.01e-62 | 203 |
| MS.gene26294.t1 | AT2G41480 | 37.879 | 330 | 182 | 9 | 7 | 323 | 9 | 328 | 1.35e-61 | 199 |
| MS.gene26294.t1 | AT5G40150 | 36.792 | 318 | 183 | 7 | 15 | 323 | 20 | 328 | 2.37e-61 | 199 |
| MS.gene26294.t1 | AT3G28200 | 37.624 | 303 | 180 | 6 | 25 | 323 | 19 | 316 | 1.42e-60 | 196 |
| MS.gene26294.t1 | AT5G39580 | 41.196 | 301 | 159 | 10 | 31 | 323 | 29 | 319 | 4.57e-60 | 195 |
| MS.gene26294.t1 | AT5G47000 | 37.117 | 326 | 191 | 8 | 8 | 325 | 13 | 332 | 6.11e-59 | 192 |
| MS.gene26294.t1 | AT4G26010 | 36.601 | 306 | 182 | 9 | 20 | 323 | 14 | 309 | 1.33e-58 | 191 |
| MS.gene26294.t1 | AT4G17690 | 38.535 | 314 | 181 | 7 | 18 | 325 | 17 | 324 | 2.07e-58 | 191 |
| MS.gene26294.t1 | AT4G26010 | 36.601 | 306 | 182 | 9 | 20 | 323 | 42 | 337 | 2.10e-58 | 191 |
| MS.gene26294.t1 | AT1G34510 | 36.076 | 316 | 191 | 9 | 9 | 323 | 4 | 309 | 1.82e-57 | 188 |
| MS.gene26294.t1 | AT5G67400 | 38.671 | 331 | 179 | 11 | 9 | 323 | 7 | 329 | 1.68e-56 | 186 |
| MS.gene26294.t1 | AT2G18980 | 36.607 | 336 | 183 | 12 | 4 | 323 | 2 | 323 | 1.89e-56 | 186 |
| MS.gene26294.t1 | AT4G25980 | 37.179 | 312 | 178 | 8 | 23 | 323 | 22 | 326 | 2.01e-56 | 186 |
| MS.gene26294.t1 | AT4G33870 | 34.718 | 337 | 169 | 9 | 30 | 322 | 71 | 400 | 2.34e-56 | 188 |
| MS.gene26294.t1 | AT2G35380 | 45.200 | 250 | 120 | 6 | 87 | 323 | 2 | 247 | 2.71e-56 | 183 |
| MS.gene26294.t1 | AT5G22410 | 33.746 | 323 | 193 | 9 | 9 | 320 | 10 | 322 | 5.35e-56 | 185 |
| MS.gene26294.t1 | AT5G64110 | 38.138 | 333 | 182 | 11 | 5 | 323 | 8 | 330 | 1.37e-55 | 184 |
| MS.gene26294.t1 | AT5G64100 | 38.284 | 303 | 167 | 10 | 30 | 323 | 40 | 331 | 1.37e-55 | 184 |
| MS.gene26294.t1 | AT4G37530 | 38.658 | 313 | 170 | 9 | 25 | 323 | 25 | 329 | 3.60e-55 | 183 |
| MS.gene26294.t1 | AT4G30170 | 37.500 | 312 | 171 | 11 | 25 | 323 | 25 | 325 | 6.69e-55 | 182 |
| MS.gene26294.t1 | AT1G24110 | 35.000 | 320 | 190 | 8 | 16 | 323 | 9 | 322 | 8.69e-55 | 182 |
| MS.gene26294.t1 | AT2G34060 | 37.013 | 308 | 176 | 9 | 26 | 320 | 41 | 343 | 1.16e-53 | 179 |
| MS.gene26294.t1 | AT2G39040 | 38.019 | 313 | 174 | 8 | 25 | 323 | 44 | 350 | 2.72e-53 | 178 |
| MS.gene26294.t1 | AT5G14130 | 34.139 | 331 | 202 | 7 | 2 | 323 | 7 | 330 | 1.26e-52 | 176 |
| MS.gene26294.t1 | AT1G77100 | 36.364 | 319 | 184 | 9 | 14 | 323 | 11 | 319 | 1.65e-52 | 176 |
| MS.gene26294.t1 | AT2G24800 | 35.897 | 312 | 178 | 7 | 24 | 323 | 28 | 329 | 1.91e-52 | 176 |
| MS.gene26294.t1 | AT5G14130 | 34.139 | 331 | 202 | 7 | 2 | 323 | 48 | 371 | 3.01e-52 | 176 |
| MS.gene26294.t1 | AT4G31760 | 33.333 | 330 | 201 | 7 | 4 | 323 | 6 | 326 | 5.19e-51 | 172 |
| MS.gene26294.t1 | AT4G37520 | 36.538 | 312 | 178 | 8 | 25 | 323 | 25 | 329 | 9.05e-51 | 171 |
| MS.gene26294.t1 | AT2G43480 | 34.161 | 322 | 186 | 10 | 17 | 323 | 25 | 335 | 1.39e-50 | 171 |
| MS.gene26294.t1 | AT5G24070 | 35.276 | 326 | 184 | 11 | 13 | 323 | 22 | 335 | 1.65e-50 | 171 |
| MS.gene26294.t1 | AT3G49960 | 36.508 | 315 | 178 | 10 | 23 | 323 | 23 | 329 | 2.10e-50 | 170 |
| MS.gene26294.t1 | AT4G37520 | 36.218 | 312 | 176 | 9 | 25 | 323 | 25 | 326 | 7.66e-49 | 166 |
| MS.gene26294.t1 | AT4G37530 | 39.231 | 260 | 138 | 8 | 25 | 270 | 25 | 278 | 2.05e-46 | 159 |
| MS.gene26294.t1 | AT2G37130 | 34.667 | 300 | 185 | 7 | 30 | 323 | 2 | 296 | 3.19e-46 | 159 |
| MS.gene26294.t1 | AT2G37130 | 34.426 | 305 | 189 | 7 | 25 | 323 | 28 | 327 | 3.57e-46 | 159 |
| MS.gene26294.t1 | AT3G17070 | 32.899 | 307 | 191 | 6 | 27 | 323 | 38 | 339 | 4.22e-45 | 157 |
| MS.gene26294.t1 | AT4G21960 | 30.240 | 334 | 217 | 7 | 1 | 324 | 1 | 328 | 2.99e-43 | 152 |
| MS.gene26294.t1 | AT4G25980 | 44.134 | 179 | 93 | 5 | 23 | 201 | 67 | 238 | 1.90e-40 | 143 |
| MS.gene26294.t1 | AT5G39580 | 44.828 | 174 | 88 | 6 | 31 | 204 | 29 | 194 | 2.61e-35 | 128 |
| MS.gene26294.t1 | AT2G24800 | 41.860 | 172 | 93 | 3 | 24 | 195 | 28 | 192 | 1.70e-32 | 121 |
| MS.gene26294.t1 | AT3G17070 | 30.108 | 279 | 179 | 7 | 55 | 323 | 4 | 276 | 1.86e-30 | 117 |
| MS.gene26294.t1 | AT4G32320 | 25.237 | 317 | 157 | 12 | 3 | 304 | 70 | 321 | 3.31e-12 | 67.0 |
Find 52 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTAATTGAATTGTTATT+TGG | 0.117052 | 5.4:-59583606 | None:intergenic |
| ATAGAACAACCAAGTCTTTA+AGG | 0.120555 | 5.4:-59584219 | None:intergenic |
| CAAATTCTGTCATAATAATT+TGG | 0.189849 | 5.4:-59583175 | None:intergenic |
| CCAAATAACAATTCAATTAG+AGG | 0.210718 | 5.4:+59583606 | MS.gene26294:CDS |
| GAAGCCTCTTACTGGGAAAA+AGG | 0.220866 | 5.4:+59584576 | MS.gene26294:CDS |
| TTGTCGTCGTCGCCAATTCT+AGG | 0.262017 | 5.4:-59584349 | None:intergenic |
| TTGCAAATTCGCTGCAAAAT+TGG | 0.262804 | 5.4:-59584317 | None:intergenic |
| TATCCTTCTTCATTCATATC+TGG | 0.282510 | 5.4:-59584630 | None:intergenic |
| AAAGACTTGGTTGTTCTATC+TGG | 0.287245 | 5.4:+59584223 | MS.gene26294:CDS |
| GGTAATTTGAAGCCTCTTAC+TGG | 0.288056 | 5.4:+59584568 | MS.gene26294:CDS |
| GTTTCTAAAGTTAGTGCATT+TGG | 0.291735 | 5.4:-59584266 | None:intergenic |
| GTAACACTTGGTACCAATAT+TGG | 0.304974 | 5.4:-59584084 | None:intergenic |
| TGCAATGGTAGGACTCAAAA+TGG | 0.327673 | 5.4:-59583143 | None:intergenic |
| CTATCTGGTGGTCACACAAT+TGG | 0.351955 | 5.4:+59584238 | MS.gene26294:CDS |
| CAAAAGACATGCCCTAGAAT+TGG | 0.380081 | 5.4:+59584337 | MS.gene26294:CDS |
| GACATCACCTTTGCAAGCTT+TGG | 0.386204 | 5.4:-59583664 | None:intergenic |
| TTTATGATTGGCAATGCCTT+TGG | 0.399242 | 5.4:-59583199 | None:intergenic |
| AGTTGACACAAAATACTATA+AGG | 0.410019 | 5.4:+59584402 | MS.gene26294:CDS |
| AGTTGGGAGGTAACCAATAT+TGG | 0.411115 | 5.4:+59584071 | MS.gene26294:intron |
| GATGATACCCCTACCTTCAT+TGG | 0.417104 | 5.4:+59583567 | MS.gene26294:CDS |
| AATGCACTAACTTTAGAAAC+AGG | 0.420538 | 5.4:+59584269 | MS.gene26294:CDS |
| TGGAGTTTCTATGATTAAGA+TGG | 0.424465 | 5.4:+59584546 | MS.gene26294:CDS |
| TATTGGTACCAAGTGTTACT+AGG | 0.448839 | 5.4:+59584088 | MS.gene26294:CDS |
| AGCTGCTATAGCTAAAATAT+CGG | 0.458807 | 5.4:-59583697 | None:intergenic |
| GGAGTTTCTATGATTAAGAT+GGG | 0.461747 | 5.4:+59584547 | MS.gene26294:CDS |
| CTCTTCTTCCTAGTAACACT+TGG | 0.476428 | 5.4:-59584096 | None:intergenic |
| TGCAGTCTTCTCACCAATGA+AGG | 0.480905 | 5.4:-59583580 | None:intergenic |
| GAGATTCAAGATTTGCAAGC+AGG | 0.488930 | 5.4:+59584116 | MS.gene26294:CDS |
| CTTGAAGGAGTAGAATCAAA+TGG | 0.501343 | 5.4:-59584379 | None:intergenic |
| TGGACTTAACCTTAAAGACT+TGG | 0.501780 | 5.4:+59584210 | MS.gene26294:CDS |
| TGTCGTCGTCGCCAATTCTA+GGG | 0.512250 | 5.4:-59584348 | None:intergenic |
| GTAATTTGAAGCCTCTTACT+GGG | 0.519840 | 5.4:+59584569 | MS.gene26294:CDS |
| GACTTGGTTGTTCTATCTGG+TGG | 0.522869 | 5.4:+59584226 | MS.gene26294:CDS |
| AATTATTCGCGAGCCACGCA+TGG | 0.522949 | 5.4:+59583240 | MS.gene26294:CDS |
| TGCAAAATTGGTGTCTATGT+TGG | 0.532185 | 5.4:-59584305 | None:intergenic |
| TCTTCTCACCAATGAAGGTA+GGG | 0.536322 | 5.4:-59583575 | None:intergenic |
| AAAGCTCTTGATCAGAATGA+AGG | 0.549289 | 5.4:-59584447 | None:intergenic |
| TTACGTTAACAAAGCAGTCA+TGG | 0.552379 | 5.4:-59583288 | None:intergenic |
| GGAGTCAGCTTTGCAATGGT+AGG | 0.560863 | 5.4:-59583154 | None:intergenic |
| AGATTCAAGATTTGCAAGCA+GGG | 0.563486 | 5.4:+59584117 | MS.gene26294:CDS |
| TGGTTCTCAAAGTGATAGAT+TGG | 0.568189 | 5.4:+59584480 | MS.gene26294:CDS |
| ATTATTCGCGAGCCACGCAT+GGG | 0.580539 | 5.4:+59583241 | MS.gene26294:CDS |
| GTCTTCTCACCAATGAAGGT+AGG | 0.586272 | 5.4:-59583576 | None:intergenic |
| ATTTGGAGTCAGCTTTGCAA+TGG | 0.588314 | 5.4:-59583158 | None:intergenic |
| GAGCCTACACAGGGTTGTGA+TGG | 0.597414 | 5.4:+59583531 | MS.gene26294:intron |
| TTCTTCAATCAACAGTTGGG+AGG | 0.601444 | 5.4:+59584058 | MS.gene26294:intron |
| CTTCTCACCAATGAAGGTAG+GGG | 0.615489 | 5.4:-59583574 | None:intergenic |
| TTATGACAGAATTTGTCCAA+AGG | 0.624218 | 5.4:+59583183 | MS.gene26294:CDS |
| ATCACAAATTTCAAGTCACA+TGG | 0.624562 | 5.4:+59584190 | MS.gene26294:CDS |
| AAGGCTTTGTTGTATAAACA+AGG | 0.625131 | 5.4:+59584421 | MS.gene26294:CDS |
| AGCAACGATGCTCCCATGCG+TGG | 0.625399 | 5.4:-59583253 | None:intergenic |
| GAAGTTACCAAAGCTTGCAA+AGG | 0.633455 | 5.4:+59583657 | MS.gene26294:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTACATTTTTAAAATT+AGG | + | chr5.4:59583332-59583351 | MS.gene26294:intron | 10.0% |
| !!! | AAGACTATTTTTTTATATTG+CGG | - | chr5.4:59583809-59583828 | None:intergenic | 15.0% |
| !!! | ATATGAGTTTAATTTAAACA+TGG | - | chr5.4:59583954-59583973 | None:intergenic | 15.0% |
| !!! | TACAGCTTTTTATATAATAT+TGG | - | chr5.4:59583869-59583888 | None:intergenic | 15.0% |
| !!! | TTAACAATTGATTTTATGAT+TGG | - | chr5.4:59583214-59583233 | None:intergenic | 15.0% |
| !! | AATATTGGAAGATTATATTG+CGG | - | chr5.4:59583854-59583873 | None:intergenic | 20.0% |
| !! | CAAATTCTGTCATAATAATT+TGG | - | chr5.4:59583178-59583197 | None:intergenic | 20.0% |
| !! | TAAAAATCACAACATAACAT+TGG | - | chr5.4:59583108-59583127 | None:intergenic | 20.0% |
| !! | TTGTATTGCAGAAAAATTTA+GGG | - | chr5.4:59583893-59583912 | None:intergenic | 20.0% |
| !!! | TATTTTGCACTTTTTAATCA+TGG | + | chr5.4:59583755-59583774 | MS.gene26294:intron | 20.0% |
| !!! | TGTTAAGTGACTATTTTATA+AGG | - | chr5.4:59583367-59583386 | None:intergenic | 20.0% |
| ! | AGTTGACACAAAATACTATA+AGG | + | chr5.4:59584402-59584421 | MS.gene26294:CDS | 25.0% |
| ! | CCAAATAACAATTCAATTAG+AGG | + | chr5.4:59583606-59583625 | MS.gene26294:CDS | 25.0% |
| ! | CTTGTATTGCAGAAAAATTT+AGG | - | chr5.4:59583894-59583913 | None:intergenic | 25.0% |
| !! | ATTTTTCTTCAATCAACAGT+TGG | + | chr5.4:59584054-59584073 | MS.gene26294:intron | 25.0% |
| !! | CCTCTAATTGAATTGTTATT+TGG | - | chr5.4:59583609-59583628 | None:intergenic | 25.0% |
| !! | TATGCTTTTGCTAAAGATTT+TGG | + | chr5.4:59584526-59584545 | MS.gene26294:CDS | 25.0% |
| !! | TTTTCTGCAATACAAGTTTA+TGG | + | chr5.4:59583898-59583917 | MS.gene26294:intron | 25.0% |
| !! | TTTTTCTTCAATCAACAGTT+GGG | + | chr5.4:59584055-59584074 | MS.gene26294:intron | 25.0% |
| AGCTGCTATAGCTAAAATAT+CGG | - | chr5.4:59583700-59583719 | None:intergenic | 30.0% | |
| AGTTGTGAGAAGTTGAAAAA+TGG | - | chr5.4:59584169-59584188 | None:intergenic | 30.0% | |
| ATAGAACAACCAAGTCTTTA+AGG | - | chr5.4:59584222-59584241 | None:intergenic | 30.0% | |
| ATCGAATAGATCACTTACTA+TGG | - | chr5.4:59583736-59583755 | None:intergenic | 30.0% | |
| GGAGTTTCTATGATTAAGAT+GGG | + | chr5.4:59584547-59584566 | MS.gene26294:CDS | 30.0% | |
| TGGAGTTTCTATGATTAAGA+TGG | + | chr5.4:59584546-59584565 | MS.gene26294:CDS | 30.0% | |
| TTATGACAGAATTTGTCCAA+AGG | + | chr5.4:59583183-59583202 | MS.gene26294:CDS | 30.0% | |
| ! | AATGCACTAACTTTAGAAAC+AGG | + | chr5.4:59584269-59584288 | MS.gene26294:CDS | 30.0% |
| ! | ATCACAAATTTCAAGTCACA+TGG | + | chr5.4:59584190-59584209 | MS.gene26294:CDS | 30.0% |
| ! | CAATTCAATTAGAGGTTTTG+AGG | + | chr5.4:59583614-59583633 | MS.gene26294:CDS | 30.0% |
| ! | TATTTTGTGTCAACTCTTGA+AGG | - | chr5.4:59584397-59584416 | None:intergenic | 30.0% |
| !! | AAGGCTTTGTTGTATAAACA+AGG | + | chr5.4:59584421-59584440 | MS.gene26294:CDS | 30.0% |
| !! | GTTTCTAAAGTTAGTGCATT+TGG | - | chr5.4:59584269-59584288 | None:intergenic | 30.0% |
| AAAGCTCTTGATCAGAATGA+AGG | - | chr5.4:59584450-59584469 | None:intergenic | 35.0% | |
| AGATTCAAGATTTGCAAGCA+GGG | + | chr5.4:59584117-59584136 | MS.gene26294:CDS | 35.0% | |
| CTTGAAGGAGTAGAATCAAA+TGG | - | chr5.4:59584382-59584401 | None:intergenic | 35.0% | |
| GTAACACTTGGTACCAATAT+TGG | - | chr5.4:59584087-59584106 | None:intergenic | 35.0% | |
| TGGACTTAACCTTAAAGACT+TGG | + | chr5.4:59584210-59584229 | MS.gene26294:CDS | 35.0% | |
| TGGTTCTCAAAGTGATAGAT+TGG | + | chr5.4:59584480-59584499 | MS.gene26294:CDS | 35.0% | |
| TGTGAGAAGTTGAAAAATGG+AGG | - | chr5.4:59584166-59584185 | None:intergenic | 35.0% | |
| TTACGTTAACAAAGCAGTCA+TGG | - | chr5.4:59583291-59583310 | None:intergenic | 35.0% | |
| TTATATTGCGGTCGCAATTA+GGG | - | chr5.4:59583797-59583816 | None:intergenic | 35.0% | |
| TTGCAAATTCGCTGCAAAAT+TGG | - | chr5.4:59584320-59584339 | None:intergenic | 35.0% | |
| TTTATATTGCGGTCGCAATT+AGG | - | chr5.4:59583798-59583817 | None:intergenic | 35.0% | |
| TTTATGATTGGCAATGCCTT+TGG | - | chr5.4:59583202-59583221 | None:intergenic | 35.0% | |
| ! | AAAGACTTGGTTGTTCTATC+TGG | + | chr5.4:59584223-59584242 | MS.gene26294:CDS | 35.0% |
| ! | GTAATTTGAAGCCTCTTACT+GGG | + | chr5.4:59584569-59584588 | MS.gene26294:CDS | 35.0% |
| ! | TATTGGTACCAAGTGTTACT+AGG | + | chr5.4:59584088-59584107 | MS.gene26294:CDS | 35.0% |
| ! | TCTGATCAAGAGCTTTTCAA+AGG | + | chr5.4:59584454-59584473 | MS.gene26294:CDS | 35.0% |
| ! | TGCAAAATTGGTGTCTATGT+TGG | - | chr5.4:59584308-59584327 | None:intergenic | 35.0% |
| AAGCCTCTTACTGGGAAAAA+GGG | + | chr5.4:59584577-59584596 | MS.gene26294:CDS | 40.0% | |
| AGTTGGGAGGTAACCAATAT+TGG | + | chr5.4:59584071-59584090 | MS.gene26294:intron | 40.0% | |
| CAAAAGACATGCCCTAGAAT+TGG | + | chr5.4:59584337-59584356 | MS.gene26294:CDS | 40.0% | |
| CTCTTCTTCCTAGTAACACT+TGG | - | chr5.4:59584099-59584118 | None:intergenic | 40.0% | |
| GAAGTTACCAAAGCTTGCAA+AGG | + | chr5.4:59583657-59583676 | MS.gene26294:CDS | 40.0% | |
| GAGAAGTTGAAAAATGGAGG+TGG | - | chr5.4:59584163-59584182 | None:intergenic | 40.0% | |
| GAGATTCAAGATTTGCAAGC+AGG | + | chr5.4:59584116-59584135 | MS.gene26294:CDS | 40.0% | |
| TCTTCTCACCAATGAAGGTA+GGG | - | chr5.4:59583578-59583597 | None:intergenic | 40.0% | |
| TGCAATGGTAGGACTCAAAA+TGG | - | chr5.4:59583146-59583165 | None:intergenic | 40.0% | |
| TTCTTCAATCAACAGTTGGG+AGG | + | chr5.4:59584058-59584077 | MS.gene26294:intron | 40.0% | |
| ! | ATTTGGAGTCAGCTTTGCAA+TGG | - | chr5.4:59583161-59583180 | None:intergenic | 40.0% |
| ! | CAAGAGCTTTTCAAAGGTGA+TGG | + | chr5.4:59584460-59584479 | MS.gene26294:CDS | 40.0% |
| ! | GGTAATTTGAAGCCTCTTAC+TGG | + | chr5.4:59584568-59584587 | MS.gene26294:CDS | 40.0% |
| CTATCTGGTGGTCACACAAT+TGG | + | chr5.4:59584238-59584257 | MS.gene26294:CDS | 45.0% | |
| CTTCTCACCAATGAAGGTAG+GGG | - | chr5.4:59583577-59583596 | None:intergenic | 45.0% | |
| GAACATTGTGAGCCTACACA+GGG | + | chr5.4:59583522-59583541 | MS.gene26294:intron | 45.0% | |
| GAAGCCTCTTACTGGGAAAA+AGG | + | chr5.4:59584576-59584595 | MS.gene26294:CDS | 45.0% | |
| GACATCACCTTTGCAAGCTT+TGG | - | chr5.4:59583667-59583686 | None:intergenic | 45.0% | |
| GATGATACCCCTACCTTCAT+TGG | + | chr5.4:59583567-59583586 | MS.gene26294:CDS | 45.0% | |
| GTCTTCTCACCAATGAAGGT+AGG | - | chr5.4:59583579-59583598 | None:intergenic | 45.0% | |
| TGAACATTGTGAGCCTACAC+AGG | + | chr5.4:59583521-59583540 | MS.gene26294:intron | 45.0% | |
| TGCAGTCTTCTCACCAATGA+AGG | - | chr5.4:59583583-59583602 | None:intergenic | 45.0% | |
| ! | GACTTGGTTGTTCTATCTGG+TGG | + | chr5.4:59584226-59584245 | MS.gene26294:CDS | 45.0% |
| ! | TCACCCTTTTTCCCAGTAAG+AGG | - | chr5.4:59584583-59584602 | None:intergenic | 45.0% |
| AATTATTCGCGAGCCACGCA+TGG | + | chr5.4:59583240-59583259 | MS.gene26294:CDS | 50.0% | |
| ATTATTCGCGAGCCACGCAT+GGG | + | chr5.4:59583241-59583260 | MS.gene26294:CDS | 50.0% | |
| CTGGGAAAAAGGGTGAGATC+AGG | + | chr5.4:59584587-59584606 | MS.gene26294:CDS | 50.0% | |
| GATCCATCACAACCCTGTGT+AGG | - | chr5.4:59583537-59583556 | None:intergenic | 50.0% | |
| GGAGTCAGCTTTGCAATGGT+AGG | - | chr5.4:59583157-59583176 | None:intergenic | 50.0% | |
| TGTCGTCGTCGCCAATTCTA+GGG | - | chr5.4:59584351-59584370 | None:intergenic | 50.0% | |
| TTGTCGTCGTCGCCAATTCT+AGG | - | chr5.4:59584352-59584371 | None:intergenic | 50.0% | |
| GAGCCTACACAGGGTTGTGA+TGG | + | chr5.4:59583531-59583550 | MS.gene26294:intron | 55.0% | |
| AGCAACGATGCTCCCATGCG+TGG | - | chr5.4:59583256-59583275 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 59583091 | 59584639 | 59583091 | ID=MS.gene26294 |
| chr5.4 | mRNA | 59583091 | 59584639 | 59583091 | ID=MS.gene26294.t1;Parent=MS.gene26294 |
| chr5.4 | exon | 59583091 | 59583306 | 59583091 | ID=MS.gene26294.t1.exon1;Parent=MS.gene26294.t1 |
| chr5.4 | CDS | 59583091 | 59583306 | 59583091 | ID=cds.MS.gene26294.t1;Parent=MS.gene26294.t1 |
| chr5.4 | exon | 59583543 | 59583737 | 59583543 | ID=MS.gene26294.t1.exon2;Parent=MS.gene26294.t1 |
| chr5.4 | CDS | 59583543 | 59583737 | 59583543 | ID=cds.MS.gene26294.t1;Parent=MS.gene26294.t1 |
| chr5.4 | exon | 59584073 | 59584639 | 59584073 | ID=MS.gene26294.t1.exon3;Parent=MS.gene26294.t1 |
| chr5.4 | CDS | 59584073 | 59584639 | 59584073 | ID=cds.MS.gene26294.t1;Parent=MS.gene26294.t1 |
| Gene Sequence |
| Protein sequence |
