Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066987.t1 | XP_003626244.1 | 91.5 | 259 | 22 | 0 | 1 | 259 | 1 | 259 | 2.00E-142 | 515 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066987.t1 | I6YGS0 | 38.7 | 266 | 141 | 6 | 7 | 258 | 7 | 264 | 2.2e-49 | 197.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066987.t1 | A2Q321 | 91.5 | 259 | 22 | 0 | 1 | 259 | 1 | 259 | 1.5e-142 | 515.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene066987 | 0.800125 | 1.67E-48 | -1.69E-46 |
| MS.gene051158 | MS.gene066987 | 0.807209 | 5.65E-50 | -1.69E-46 |
| MS.gene051632 | MS.gene066987 | 0.814064 | 1.86E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene066987 | 0.804111 | 2.53E-49 | -1.69E-46 |
| MS.gene053027 | MS.gene066987 | 0.801732 | 7.84E-49 | -1.69E-46 |
| MS.gene053406 | MS.gene066987 | 0.805306 | 1.42E-49 | -1.69E-46 |
| MS.gene054181 | MS.gene066987 | 0.828097 | 1.09E-54 | -1.69E-46 |
| MS.gene054290 | MS.gene066987 | 0.826567 | 2.53E-54 | -1.69E-46 |
| MS.gene054742 | MS.gene066987 | 0.806412 | 8.33E-50 | -1.69E-46 |
| MS.gene055601 | MS.gene066987 | 0.819022 | 1.44E-52 | -1.69E-46 |
| MS.gene055959 | MS.gene066987 | 0.834909 | 2.28E-56 | -1.69E-46 |
| MS.gene057544 | MS.gene066987 | 0.842713 | 2.19E-58 | -1.69E-46 |
| MS.gene058093 | MS.gene066987 | 0.802275 | 6.06E-49 | -1.69E-46 |
| MS.gene058218 | MS.gene066987 | 0.87873 | 2.22E-69 | -1.69E-46 |
| MS.gene059037 | MS.gene066987 | 0.815682 | 8.16E-52 | -1.69E-46 |
| MS.gene059294 | MS.gene066987 | -0.818242 | 2.17E-52 | -1.69E-46 |
| MS.gene059402 | MS.gene066987 | 0.84653 | 2.05E-59 | -1.69E-46 |
| MS.gene059953 | MS.gene066987 | 0.803163 | 3.97E-49 | -1.69E-46 |
| MS.gene059955 | MS.gene066987 | 0.815751 | 7.87E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066987 | MS.gene041604 | PPI |
| MS.gene76453 | MS.gene066987 | PPI |
| MS.gene066987 | MS.gene025707 | PPI |
| MS.gene066987 | MS.gene22955 | PPI |
| MS.gene066987 | MS.gene071500 | PPI |
| MS.gene066987 | MS.gene012063 | PPI |
| MS.gene066987 | MS.gene035369 | PPI |
| MS.gene77823 | MS.gene066987 | PPI |
| MS.gene035367 | MS.gene066987 | PPI |
| MS.gene066987 | MS.gene035373 | PPI |
| MS.gene066987 | MS.gene07001 | PPI |
| MS.gene066360 | MS.gene066987 | PPI |
| MS.gene89620 | MS.gene066987 | PPI |
| MS.gene066987 | MS.gene066361 | PPI |
| MS.gene066987 | MS.gene035371 | PPI |
| MS.gene066987 | MS.gene071502 | PPI |
| MS.gene071504 | MS.gene066987 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066987.t1 | MTR_7g113030 | 91.506 | 259 | 22 | 0 | 1 | 259 | 1 | 259 | 0.0 | 507 |
| MS.gene066987.t1 | MTR_7g113050 | 91.120 | 259 | 23 | 0 | 1 | 259 | 1 | 259 | 0.0 | 502 |
| MS.gene066987.t1 | MTR_7g112615 | 88.803 | 259 | 29 | 0 | 1 | 259 | 1 | 259 | 1.06e-177 | 491 |
| MS.gene066987.t1 | MTR_7g112620 | 86.100 | 259 | 36 | 0 | 1 | 259 | 1 | 259 | 6.38e-172 | 477 |
| MS.gene066987.t1 | MTR_7g113020 | 84.556 | 259 | 40 | 0 | 1 | 259 | 1 | 259 | 3.48e-170 | 473 |
| MS.gene066987.t1 | MTR_7g113050 | 90.336 | 238 | 23 | 0 | 1 | 238 | 1 | 238 | 3.74e-165 | 456 |
| MS.gene066987.t1 | MTR_7g112615 | 87.815 | 238 | 29 | 0 | 1 | 238 | 1 | 238 | 4.09e-161 | 446 |
| MS.gene066987.t1 | MTR_7g112960 | 76.245 | 261 | 58 | 2 | 1 | 259 | 1 | 259 | 1.61e-147 | 415 |
| MS.gene066987.t1 | MTR_4g005160 | 73.004 | 263 | 66 | 3 | 1 | 259 | 1 | 262 | 3.23e-147 | 414 |
| MS.gene066987.t1 | MTR_7g112970 | 74.903 | 259 | 62 | 2 | 1 | 259 | 1 | 256 | 3.42e-145 | 409 |
| MS.gene066987.t1 | MTR_7g112963 | 75.769 | 260 | 59 | 2 | 1 | 258 | 1 | 258 | 4.66e-144 | 406 |
| MS.gene066987.t1 | MTR_7g113010 | 74.713 | 261 | 62 | 2 | 1 | 259 | 1 | 259 | 1.63e-142 | 412 |
| MS.gene066987.t1 | MTR_4g120240 | 62.692 | 260 | 93 | 3 | 1 | 258 | 37 | 294 | 1.05e-116 | 338 |
| MS.gene066987.t1 | MTR_7g108825 | 61.776 | 259 | 97 | 2 | 1 | 259 | 1 | 257 | 2.04e-111 | 323 |
| MS.gene066987.t1 | MTR_7g112615 | 86.792 | 159 | 21 | 0 | 1 | 159 | 1 | 159 | 8.09e-102 | 294 |
| MS.gene066987.t1 | MTR_7g108825 | 60.924 | 238 | 91 | 2 | 1 | 238 | 1 | 236 | 1.51e-99 | 290 |
| MS.gene066987.t1 | MTR_8g076680 | 50.193 | 259 | 127 | 2 | 1 | 259 | 3 | 259 | 6.84e-93 | 276 |
| MS.gene066987.t1 | MTR_1g083480 | 73.585 | 159 | 38 | 2 | 1 | 156 | 1 | 158 | 1.16e-85 | 253 |
| MS.gene066987.t1 | MTR_8g076680 | 48.739 | 238 | 120 | 2 | 1 | 238 | 3 | 238 | 2.76e-81 | 244 |
| MS.gene066987.t1 | MTR_3g024250 | 90.654 | 107 | 10 | 0 | 46 | 152 | 1 | 107 | 4.04e-67 | 204 |
| MS.gene066987.t1 | MTR_7g112910 | 56.085 | 189 | 41 | 4 | 72 | 259 | 1 | 148 | 2.33e-63 | 197 |
| MS.gene066987.t1 | MTR_4g089060 | 37.548 | 261 | 149 | 5 | 1 | 258 | 1 | 250 | 3.90e-54 | 177 |
| MS.gene066987.t1 | MTR_4g089060 | 38.627 | 233 | 134 | 3 | 1 | 231 | 1 | 226 | 1.10e-53 | 174 |
| MS.gene066987.t1 | MTR_2g090240 | 36.398 | 261 | 153 | 5 | 1 | 258 | 1 | 251 | 2.78e-52 | 172 |
| MS.gene066987.t1 | MTR_4g089040 | 36.398 | 261 | 152 | 5 | 1 | 258 | 1 | 250 | 7.95e-51 | 169 |
| MS.gene066987.t1 | MTR_2g090245 | 36.398 | 261 | 153 | 6 | 1 | 258 | 1 | 251 | 2.22e-50 | 167 |
| MS.gene066987.t1 | MTR_4g089060 | 34.375 | 288 | 148 | 6 | 1 | 258 | 1 | 277 | 4.86e-49 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066987.t1 | AT3G05600 | 63.636 | 264 | 91 | 4 | 1 | 259 | 1 | 264 | 9.46e-123 | 353 |
| MS.gene066987.t1 | AT4G02340 | 59.846 | 259 | 101 | 3 | 1 | 259 | 1 | 256 | 3.82e-113 | 328 |
| MS.gene066987.t1 | AT3G05600 | 62.551 | 243 | 86 | 4 | 1 | 238 | 1 | 243 | 1.20e-109 | 316 |
| MS.gene066987.t1 | AT2G26740 | 60.536 | 261 | 96 | 4 | 4 | 258 | 1 | 260 | 4.98e-100 | 295 |
| MS.gene066987.t1 | AT4G15960 | 53.788 | 264 | 115 | 3 | 1 | 258 | 51 | 313 | 8.72e-100 | 296 |
| MS.gene066987.t1 | AT2G26750 | 59.615 | 260 | 99 | 4 | 4 | 258 | 1 | 259 | 7.83e-97 | 286 |
| MS.gene066987.t1 | AT3G51000 | 48.679 | 265 | 117 | 4 | 3 | 258 | 4 | 258 | 1.44e-88 | 266 |
| MS.gene066987.t1 | AT4G15955 | 50.943 | 265 | 92 | 4 | 5 | 258 | 6 | 243 | 1.88e-86 | 259 |
| MS.gene066987.t1 | AT4G15955 | 58.621 | 174 | 62 | 2 | 5 | 168 | 6 | 179 | 1.98e-69 | 212 |
| MS.gene066987.t1 | AT4G15955 | 58.788 | 165 | 58 | 2 | 5 | 159 | 6 | 170 | 4.06e-65 | 201 |
Find 0 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAAATTAAATATATTATG+TGG | + | 20769:6275-6294 | MS.gene066987:intergenic | 10.0% |
| !! | AAAATTACAATTTATTTCCA+TGG | - | 20769:6212-6231 | MS.gene066987:intron | 15.0% |
| !! | GAAAATGTTTATTAGAATTT+AGG | - | 20769:5777-5796 | MS.gene066987:intron | 15.0% |
| !! | TAATTTAGTGTTAAAATTTG+AGG | + | 20769:6238-6257 | MS.gene066987:intergenic | 15.0% |
| !! | TCTGATTCAAAATATTATAT+TGG | + | 20769:6685-6704 | MS.gene066987:intergenic | 15.0% |
| !! | TTATTATATATGTAGATTTC+AGG | - | 20769:5677-5696 | MS.gene066987:CDS | 15.0% |
| !!! | ATGGAAATAAATTGTAATTT+TGG | + | 20769:6213-6232 | MS.gene066987:intergenic | 15.0% |
| !!! | ATTTAATCTTTTTTTAATGG+TGG | - | 20769:6022-6041 | MS.gene066987:intron | 15.0% |
| !!! | TATTTTAAATTTTGTGATCA+CGG | - | 20769:5883-5902 | MS.gene066987:intron | 15.0% |
| !! | GAGTAATATTGAATATGTTA+AGG | - | 20769:6493-6512 | MS.gene066987:intron | 20.0% |
| !! | GGAAAATTAGTAGTAATTTA+AGG | + | 20769:5714-5733 | MS.gene066987:intergenic | 20.0% |
| !! | GTATTGTCAACATATATTTA+TGG | + | 20769:7069-7088 | MS.gene066987:intergenic | 20.0% |
| !! | TTAATTTAACAGTCTAGATT+TGG | - | 20769:6285-6304 | MS.gene066987:intron | 20.0% |
| !! | TTTGTTTATGTAAAAAGAAG+TGG | - | 20769:6709-6728 | MS.gene066987:intron | 20.0% |
| !!! | ATATTATGTGGTTTAGAATA+TGG | + | 20769:6263-6282 | MS.gene066987:intergenic | 20.0% |
| !!! | TATATGTTGACAATACTTTT+TGG | - | 20769:7073-7092 | MS.gene066987:CDS | 20.0% |
| ! | AAAATGCATATTGCTGAAAA+AGG | - | 20769:5273-5292 | MS.gene066987:CDS | 25.0% |
| ! | AAATACCAATATTCGATTGA+AGG | - | 20769:5912-5931 | MS.gene066987:intron | 25.0% |
| ! | AATATAACATGTATACGTGT+CGG | + | 20769:7187-7206 | MS.gene066987:intergenic | 25.0% |
| ! | AGTATAGTCTATATCAAAAG+AGG | - | 20769:6389-6408 | MS.gene066987:intron | 25.0% |
| ! | ATGATATGTAGCTAAAAGAA+AGG | + | 20769:6609-6628 | MS.gene066987:intergenic | 25.0% |
| ! | ATTACTTGTATTGCAGAAAT+TGG | - | 20769:7239-7258 | MS.gene066987:CDS | 25.0% |
| ! | TAAATATATCCAAACAAGAG+TGG | + | 20769:5735-5754 | MS.gene066987:intergenic | 25.0% |
| ! | TAAATCCTTCAATCGAATAT+TGG | + | 20769:5920-5939 | MS.gene066987:intergenic | 25.0% |
| ! | TATTGAATATGTTAAGGTAC+CGG | - | 20769:6499-6518 | MS.gene066987:intron | 25.0% |
| ! | TTACTTGTATTGCAGAAATT+GGG | - | 20769:7240-7259 | MS.gene066987:CDS | 25.0% |
| ! | TTTGGATATATTTATTCGAG+AGG | - | 20769:5741-5760 | MS.gene066987:CDS | 25.0% |
| !! | CTGAATAACATAATTGCTTT+TGG | - | 20769:6749-6768 | MS.gene066987:intron | 25.0% |
| !! | GTTTATTAGAATTTAGGACA+TGG | - | 20769:5783-5802 | MS.gene066987:intron | 25.0% |
| !!! | ATCAATTTTGATTCGATTGA+AGG | - | 20769:5939-5958 | MS.gene066987:intron | 25.0% |
| AAATTGAAACCAACATCCAT+GGG | + | 20769:6154-6173 | None:intergenic | 30.0% | |
| AGTATTGCATGACTTCATAA+TGG | - | 20769:6556-6575 | MS.gene066987:intron | 30.0% | |
| ATTGCTGAAAAAGGAAAACA+AGG | - | 20769:5282-5301 | MS.gene066987:intron | 30.0% | |
| ATTTGGAGACATAATAAGCA+AGG | + | 20769:6957-6976 | MS.gene066987:intergenic | 30.0% | |
| GAAAATCAATAAGTGCAACA+AGG | + | 20769:5482-5501 | MS.gene066987:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | 20769:6067-6086 | MS.gene066987:intergenic | 30.0% | |
| GGTCATACTTCAAAATTTAG+AGG | + | 20769:6633-6652 | MS.gene066987:intergenic | 30.0% | |
| GTGCTTATAATATAAGAGTC+AGG | + | 20769:6347-6366 | MS.gene066987:intergenic | 30.0% | |
| TATCAAAAGAGGAAACCTTA+TGG | - | 20769:6400-6419 | MS.gene066987:intron | 30.0% | |
| TATTTATTCGAGAGGACTTA+TGG | - | 20769:5749-5768 | MS.gene066987:intron | 30.0% | |
| TCATGCAATACTAAAGTTGA+TGG | + | 20769:6548-6567 | MS.gene066987:intergenic | 30.0% | |
| ! | ACTAATTTTCCACTCTTGTT+TGG | - | 20769:5723-5742 | MS.gene066987:CDS | 30.0% |
| ! | CATCAACTGTCTTGATTTTA+GGG | + | 20769:5632-5651 | MS.gene066987:intergenic | 30.0% |
| !! | AACATAGGCTTTGATTTTGT+CGG | + | 20769:5580-5599 | MS.gene066987:intergenic | 30.0% |
| !! | GATACGATTCATTTTGAGTA+GGG | + | 20769:6654-6673 | MS.gene066987:intergenic | 30.0% |
| !!! | AATCTTTTTTTAATGGTGGC+CGG | - | 20769:6026-6045 | MS.gene066987:intron | 30.0% |
| !!! | GATTTGTTGTGCATTTTGTA+AGG | - | 20769:6471-6490 | MS.gene066987:intron | 30.0% |
| !!! | GTTGCACTTATTGATTTTCT+GGG | - | 20769:5483-5502 | MS.gene066987:intron | 30.0% |
| !!! | TCTTGATTTTAGGGTTTCTT+CGG | + | 20769:5623-5642 | MS.gene066987:intergenic | 30.0% |
| !!! | TGTTGCACTTATTGATTTTC+TGG | - | 20769:5482-5501 | MS.gene066987:intron | 30.0% |
| ATGGAATGGAGTGAAAATCA+AGG | - | 20769:7276-7295 | MS.gene066987:CDS | 35.0% | |
| CCAAAATAAGACAACTTGAC+CGG | + | 20769:6521-6540 | MS.gene066987:intergenic | 35.0% | |
| CCATGAAGAAACAAGACAAT+TGG | + | 20769:5309-5328 | MS.gene066987:intergenic | 35.0% | |
| GAAATTGAAACCAACATCCA+TGG | + | 20769:6155-6174 | MS.gene066987:intergenic | 35.0% | |
| GAATTAACTGGTCAACCATA+AGG | + | 20769:6418-6437 | MS.gene066987:intergenic | 35.0% | |
| GCTTATTGAAGATGGAGAAT+CGG | + | 20769:5430-5449 | MS.gene066987:intergenic | 35.0% | |
| GTCTCCAAATTTGAGAAAAC+AGG | - | 20769:6967-6986 | MS.gene066987:CDS | 35.0% | |
| TATCTTACGCCTGATGTTAA+TGG | - | 20769:6319-6338 | MS.gene066987:intron | 35.0% | |
| TATTTATGGAAAACAACCCG+AGG | + | 20769:7055-7074 | MS.gene066987:intergenic | 35.0% | |
| TGTTGATCAAGTGTTTCTTG+TGG | - | 20769:5506-5525 | MS.gene066987:intron | 35.0% | |
| ! | AGTGTTAAAATTTGAGGCCA+TGG | + | 20769:6232-6251 | MS.gene066987:intergenic | 35.0% |
| ! | ATTTTTCTCTCATAGTCCCA+TGG | - | 20769:6135-6154 | MS.gene066987:intron | 35.0% |
| ! | GAAGCCTGTTTTCTCAAATT+TGG | + | 20769:6974-6993 | MS.gene066987:intergenic | 35.0% |
| ! | GCATCAACTGTCTTGATTTT+AGG | + | 20769:5633-5652 | MS.gene066987:intergenic | 35.0% |
| ! | TTGATTTTCACTCCATTCCA+TGG | + | 20769:7277-7296 | MS.gene066987:intergenic | 35.0% |
| ! | TTTTGTTCTTTGTGCTACCT+CGG | - | 20769:7035-7054 | MS.gene066987:CDS | 35.0% |
| !! | ACATAGGCTTTGATTTTGTC+GGG | + | 20769:5579-5598 | MS.gene066987:intergenic | 35.0% |
| !! | CCAATTGTCTTGTTTCTTCA+TGG | - | 20769:5306-5325 | MS.gene066987:intron | 35.0% |
| !! | CGATACGATTCATTTTGAGT+AGG | + | 20769:6655-6674 | MS.gene066987:intergenic | 35.0% |
| !! | TGCTTGCTTCTAGAATTAAC+TGG | + | 20769:6430-6449 | MS.gene066987:intergenic | 35.0% |
| !!! | ATCTTTTTTTAATGGTGGCC+GGG | - | 20769:6027-6046 | MS.gene066987:intron | 35.0% |
| !!! | CGGTCAAGTTGTCTTATTTT+GGG | - | 20769:6519-6538 | MS.gene066987:intron | 35.0% |
| AGGAATAGAACACAGAACAG+TGG | - | 20769:5236-5255 | MS.gene066987:CDS | 40.0% | |
| AGTCAGGATCCATTAACATC+AGG | + | 20769:6331-6350 | MS.gene066987:intergenic | 40.0% | |
| ATATTTCCCAAGGGAGAGTA+TGG | - | 20769:6874-6893 | MS.gene066987:CDS | 40.0% | |
| CATAATATATGCAAGGTCCG+AGG | + | 20769:6060-6079 | MS.gene066987:intergenic | 40.0% | |
| CTTCAATAAGCAGCTACACA+GGG | - | 20769:5439-5458 | MS.gene066987:intron | 40.0% | |
| GTGTAGCTGCTTATTGAAGA+TGG | + | 20769:5438-5457 | MS.gene066987:intergenic | 40.0% | |
| GTTTCTTGTGGCTCATGATT+GGG | - | 20769:5518-5537 | MS.gene066987:intron | 40.0% | |
| TAAAAAATGCCCTCACAGCT+CGG | - | 20769:6836-6855 | MS.gene066987:intron | 40.0% | |
| TACACAGGGTTTCATATGGT+TGG | - | 20769:5453-5472 | MS.gene066987:intron | 40.0% | |
| TACTCTCCCTTGGGAAATAT+TGG | + | 20769:6874-6893 | MS.gene066987:intergenic | 40.0% | |
| TCATCTTCTGTAAGCCAAGA+GGG | + | 20769:6934-6953 | MS.gene066987:intergenic | 40.0% | |
| TCTTCAATAAGCAGCTACAC+AGG | - | 20769:5438-5457 | MS.gene066987:intron | 40.0% | |
| TGTTTCTTGTGGCTCATGAT+TGG | - | 20769:5517-5536 | MS.gene066987:intron | 40.0% | |
| TTTCTTGTGGCTCATGATTG+GGG | - | 20769:5519-5538 | MS.gene066987:intron | 40.0% | |
| TTTGAGAAAACAGGCTTCAC+TGG | - | 20769:6976-6995 | MS.gene066987:CDS | 40.0% | |
| TTTGTTCTTTGTGCTACCTC+GGG | - | 20769:7036-7055 | MS.gene066987:CDS | 40.0% | |
| !! | CATAGGCTTTGATTTTGTCG+GGG | + | 20769:5578-5597 | MS.gene066987:intergenic | 40.0% |
| !!! | CCGGTCAAGTTGTCTTATTT+TGG | - | 20769:6518-6537 | MS.gene066987:intron | 40.0% |
| !!! | TCTTTTTTTAATGGTGGCCG+GGG | - | 20769:6028-6047 | MS.gene066987:intron | 40.0% |
| !!! | TTGCTTTTGGTTCATACCAC+AGG | - | 20769:6762-6781 | MS.gene066987:intron | 40.0% |
| AGCTAAGAGCTACAATCTGG+TGG | + | 20769:5359-5378 | MS.gene066987:intergenic | 45.0% | |
| AGGCAAAATGGAAGCTGAGA+TGG | - | 20769:6789-6808 | MS.gene066987:intron | 45.0% | |
| ATCTCCATAAGCAGCATGCA+TGG | + | 20769:5655-5674 | MS.gene066987:intergenic | 45.0% | |
| ATTGTAGCTCTTAGCTCCCT+CGG | - | 20769:5363-5382 | MS.gene066987:intron | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | - | 20769:5246-5265 | MS.gene066987:CDS | 45.0% | |
| CAGCTACACAGGGTTTCATA+TGG | - | 20769:5449-5468 | MS.gene066987:intron | 45.0% | |
| CTTTGTGAGCTTAGCTCAGT+TGG | + | 20769:6094-6113 | MS.gene066987:intergenic | 45.0% | |
| GGGAACACTGAGACAAACAT+AGG | + | 20769:5595-5614 | MS.gene066987:intergenic | 45.0% | |
| GGTCCTCCAATATTTCCCAA+GGG | - | 20769:6865-6884 | MS.gene066987:CDS | 45.0% | |
| GTCATCTTCTGTAAGCCAAG+AGG | + | 20769:6935-6954 | MS.gene066987:intergenic | 45.0% | |
| TCCTGGAACTCTGGTATTCA+TGG | - | 20769:5331-5350 | MS.gene066987:intron | 45.0% | |
| TCTCATAGTCCCATGGATGT+TGG | - | 20769:6142-6161 | MS.gene066987:intron | 45.0% | |
| TCTCCCTTGGGAAATATTGG+AGG | + | 20769:6871-6890 | MS.gene066987:intergenic | 45.0% | |
| TCTCCTTTCACGTGAGAGAT+CGG | - | 20769:6173-6192 | MS.gene066987:intron | 45.0% | |
| TGGTCCTCCAATATTTCCCA+AGG | - | 20769:6864-6883 | MS.gene066987:CDS | 45.0% | |
| TTAGGGTTTCTTCGGAGCAA+GGG | + | 20769:5615-5634 | MS.gene066987:intergenic | 45.0% | |
| TTCTGTAAGCCAAGAGGGTA+AGG | + | 20769:6929-6948 | MS.gene066987:intergenic | 45.0% | |
| TTGCAGAAATTGGGAGCTGA+TGG | - | 20769:7249-7268 | MS.gene066987:CDS | 45.0% | |
| ! | ATCTCAGCTTCCATTTTGCC+TGG | + | 20769:6790-6809 | MS.gene066987:intergenic | 45.0% |
| ! | ATTGGGGTGCTATCATTGGT+TGG | - | 20769:5535-5554 | MS.gene066987:CDS | 45.0% |
| ! | CATGATTGGGGTGCTATCAT+TGG | - | 20769:5531-5550 | MS.gene066987:CDS | 45.0% |
| ! | CTTGTTTCTTCATGGCTTCC+TGG | - | 20769:5314-5333 | MS.gene066987:intron | 45.0% |
| ! | TTCTAGAAGCAAGCATGACG+CGG | - | 20769:6435-6454 | MS.gene066987:intron | 45.0% |
| ! | TTTAGGGTTTCTTCGGAGCA+AGG | + | 20769:5616-5635 | MS.gene066987:intergenic | 45.0% |
| !!! | TTTATTTAATCTTTTTTTAA+TGG | - | 20769:6019-6038 | MS.gene066987:intron | 5.0% |
| ACCACAGGAACCAGGCAAAA+TGG | - | 20769:6777-6796 | MS.gene066987:intron | 50.0% | |
| CCAGTTCCATACTCTCCCTT+GGG | + | 20769:6883-6902 | MS.gene066987:intergenic | 50.0% | |
| GAAGCTGAGATGGCTGAAGT+TGG | - | 20769:6799-6818 | MS.gene066987:intron | 50.0% | |
| GAGAAAACAGGCTTCACTGG+AGG | - | 20769:6979-6998 | MS.gene066987:CDS | 50.0% | |
| GCCATGAATACCAGAGTTCC+AGG | + | 20769:5335-5354 | MS.gene066987:intergenic | 50.0% | |
| GGGAGCTAAGAGCTACAATC+TGG | + | 20769:5362-5381 | MS.gene066987:intergenic | 50.0% | |
| TCACCATAGCCACGAAGATC+AGG | + | 20769:5405-5424 | MS.gene066987:intergenic | 50.0% | |
| TGGTTCATACCACAGGAACC+AGG | - | 20769:6769-6788 | MS.gene066987:intron | 50.0% | |
| TTCATGGCTTCCTGGAACTC+TGG | - | 20769:5322-5341 | MS.gene066987:intron | 50.0% | |
| ! | ACCAGTTTTCCGAGCTGTGA+GGG | + | 20769:6848-6867 | MS.gene066987:intergenic | 50.0% |
| ! | CCAAGGGAGAGTATGGAACT+GGG | - | 20769:6881-6900 | MS.gene066987:CDS | 50.0% |
| ! | GATGCCATGCATGCTGCTTA+TGG | - | 20769:5648-5667 | MS.gene066987:CDS | 50.0% |
| ! | TCCATTTTGCCTGGTTCCTG+TGG | + | 20769:6781-6800 | MS.gene066987:intergenic | 50.0% |
| !! | GGTAAGGTGTCAGGAGTATC+CGG | + | 20769:6913-6932 | MS.gene066987:intergenic | 50.0% |
| !! | GTAAGGTGTCAGGAGTATCC+GGG | + | 20769:6912-6931 | MS.gene066987:intergenic | 50.0% |
| AAGGTCCGAGGTTCAAACCC+CGG | + | 20769:6048-6067 | None:intergenic | 55.0% | |
| ATTGGGAGCTGATGGCACCA+TGG | - | 20769:7257-7276 | MS.gene066987:CDS | 55.0% | |
| CCCAGTTCCATACTCTCCCT+TGG | + | 20769:6884-6903 | MS.gene066987:intergenic | 55.0% | |
| CTCCTGACACCTTACCCTCT+TGG | - | 20769:6917-6936 | MS.gene066987:CDS | 55.0% | |
| GAGCTGATGGCACCATGGAA+TGG | - | 20769:7262-7281 | MS.gene066987:CDS | 55.0% | |
| GCTCCTGATCTTCGTGGCTA+TGG | - | 20769:5399-5418 | MS.gene066987:intron | 55.0% | |
| GTATGGAACTGGGTTCGACC+CGG | - | 20769:6891-6910 | MS.gene066987:CDS | 55.0% | |
| TGTCGGGGCGAAACATGCAA+AGG | + | 20769:5563-5582 | MS.gene066987:intergenic | 55.0% | |
| ! | AGCCAAGAGGGTAAGGTGTC+AGG | + | 20769:6922-6941 | MS.gene066987:intergenic | 55.0% |
| ! | CCCAAGGGAGAGTATGGAAC+TGG | - | 20769:6880-6899 | MS.gene066987:CDS | 55.0% |
| ! | GACCAGTTTTCCGAGCTGTG+AGG | + | 20769:6849-6868 | MS.gene066987:intergenic | 55.0% |
| ! | GCACCGATCTCTCACGTGAA+AGG | + | 20769:6179-6198 | MS.gene066987:intergenic | 55.0% |
| GAAGATCAGGAGCCACGGCA+TGG | + | 20769:5392-5411 | MS.gene066987:intergenic | 60.0% | |
| GCCACGAAGATCAGGAGCCA+CGG | + | 20769:5397-5416 | MS.gene066987:intergenic | 60.0% | |
| GCCCTCACAGCTCGGAAAAC+TGG | - | 20769:6844-6863 | MS.gene066987:intron | 60.0% | |
| AGCCACGGCATGGTAGCCGA+GGG | + | 20769:5382-5401 | MS.gene066987:intergenic | 65.0% | |
| GCCGTGGCTCCTGATCTTCG+TGG | - | 20769:5393-5412 | MS.gene066987:intron | 65.0% | |
| GGTGGCCGGGGTTTGAACCT+CGG | - | 20769:6040-6059 | MS.gene066987:intron | 65.0% | |
| CTCCCTCGGCTACCATGCCG+TGG | - | 20769:5377-5396 | MS.gene066987:intron | 70.0% | |
| GAGCCACGGCATGGTAGCCG+AGG | + | 20769:5383-5402 | MS.gene066987:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 20769 | gene | 5231 | 7319 | 5231 | ID=MS.gene066987 |
| 20769 | mRNA | 5231 | 7319 | 5231 | ID=MS.gene066987.t1;Parent=MS.gene066987 |
| 20769 | exon | 6852 | 7319 | 6852 | ID=MS.gene066987.t1.exon1;Parent=MS.gene066987.t1 |
| 20769 | CDS | 6852 | 7319 | 6852 | ID=cds.MS.gene066987.t1;Parent=MS.gene066987.t1 |
| 20769 | exon | 5522 | 5766 | 5522 | ID=MS.gene066987.t1.exon2;Parent=MS.gene066987.t1 |
| 20769 | CDS | 5522 | 5766 | 5522 | ID=cds.MS.gene066987.t1;Parent=MS.gene066987.t1 |
| 20769 | exon | 5231 | 5295 | 5231 | ID=MS.gene066987.t1.exon3;Parent=MS.gene066987.t1 |
| 20769 | CDS | 5231 | 5295 | 5231 | ID=cds.MS.gene066987.t1;Parent=MS.gene066987.t1 |
| Gene Sequence |
| Protein sequence |
