Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053027.t1 | XP_003618167.1 | 96.8 | 220 | 7 | 0 | 1 | 220 | 1 | 220 | 4.30E-117 | 430.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053027.t1 | Q9FIC9 | 64.8 | 213 | 72 | 2 | 6 | 215 | 7 | 219 | 4.0e-71 | 269.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053027.t1 | G7KQ20 | 96.8 | 220 | 7 | 0 | 1 | 220 | 1 | 220 | 3.1e-117 | 430.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053027 | MS.gene053030 | 0.81569 | 8.12E-52 | -1.69E-46 |
MS.gene053027 | MS.gene053033 | 0.804723 | 1.88E-49 | -1.69E-46 |
MS.gene053027 | MS.gene066987 | 0.801732 | 7.84E-49 | -1.69E-46 |
MS.gene053027 | MS.gene48314 | 0.807871 | 4.09E-50 | -1.69E-46 |
MS.gene053027 | MS.gene51007 | 0.802327 | 5.91E-49 | -1.69E-46 |
MS.gene053027 | MS.gene82860 | 0.811631 | 6.36E-51 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053027.t1 | MTR_6g005360 | 96.818 | 220 | 7 | 0 | 1 | 220 | 1 | 220 | 3.94e-156 | 431 |
MS.gene053027.t1 | MTR_6g005310 | 96.347 | 219 | 8 | 0 | 1 | 219 | 1 | 219 | 1.79e-154 | 427 |
MS.gene053027.t1 | MTR_6g005340 | 95.909 | 220 | 9 | 0 | 1 | 220 | 1 | 220 | 3.00e-154 | 426 |
MS.gene053027.t1 | MTR_6g005330 | 95.000 | 220 | 11 | 0 | 1 | 220 | 1 | 220 | 3.51e-153 | 424 |
MS.gene053027.t1 | MTR_1g079490 | 80.365 | 219 | 40 | 3 | 5 | 220 | 4 | 222 | 2.03e-123 | 348 |
MS.gene053027.t1 | MTR_4g017040 | 75.566 | 221 | 53 | 1 | 1 | 220 | 1 | 221 | 6.65e-119 | 337 |
MS.gene053027.t1 | MTR_2g019250 | 75.566 | 221 | 53 | 1 | 1 | 220 | 1 | 221 | 2.95e-118 | 335 |
MS.gene053027.t1 | MTR_4g017050 | 74.661 | 221 | 55 | 1 | 1 | 220 | 1 | 221 | 8.35e-118 | 334 |
MS.gene053027.t1 | MTR_5g046410 | 74.661 | 221 | 55 | 1 | 1 | 220 | 1 | 221 | 9.74e-118 | 334 |
MS.gene053027.t1 | MTR_5g046430 | 74.661 | 221 | 55 | 1 | 1 | 220 | 1 | 221 | 9.74e-118 | 334 |
MS.gene053027.t1 | MTR_4g017030 | 74.661 | 221 | 55 | 1 | 1 | 220 | 1 | 221 | 9.74e-118 | 334 |
MS.gene053027.t1 | MTR_6g005350 | 74.091 | 220 | 56 | 1 | 1 | 220 | 1 | 219 | 2.55e-112 | 320 |
MS.gene053027.t1 | MTR_6g005380 | 71.154 | 208 | 59 | 1 | 1 | 207 | 1 | 208 | 2.79e-102 | 295 |
MS.gene053027.t1 | MTR_1g023770 | 62.626 | 198 | 64 | 2 | 20 | 215 | 20 | 209 | 6.93e-83 | 245 |
MS.gene053027.t1 | MTR_2g030855 | 62.312 | 199 | 68 | 2 | 19 | 215 | 19 | 212 | 2.39e-82 | 244 |
MS.gene053027.t1 | MTR_2g031270 | 63.021 | 192 | 64 | 2 | 26 | 215 | 27 | 213 | 3.72e-80 | 239 |
MS.gene053027.t1 | MTR_2g030895 | 65.116 | 172 | 57 | 2 | 47 | 215 | 7 | 178 | 1.15e-75 | 226 |
MS.gene053027.t1 | MTR_2g030865 | 65.116 | 172 | 57 | 2 | 47 | 215 | 7 | 178 | 3.56e-74 | 222 |
MS.gene053027.t1 | MTR_2g031300 | 60.000 | 160 | 42 | 2 | 47 | 204 | 7 | 146 | 7.65e-59 | 182 |
MS.gene053027.t1 | MTR_1g085500 | 47.549 | 204 | 97 | 4 | 17 | 214 | 14 | 213 | 1.15e-57 | 182 |
MS.gene053027.t1 | MTR_7g111240 | 50.510 | 196 | 91 | 3 | 22 | 215 | 20 | 211 | 7.79e-55 | 174 |
MS.gene053027.t1 | MTR_1g085140 | 47.959 | 196 | 96 | 3 | 22 | 215 | 24 | 215 | 4.10e-53 | 170 |
MS.gene053027.t1 | MTR_5g036570 | 48.223 | 197 | 95 | 4 | 22 | 215 | 27 | 219 | 1.78e-52 | 169 |
MS.gene053027.t1 | MTR_7g111240 | 50.000 | 196 | 89 | 3 | 22 | 215 | 20 | 208 | 2.74e-52 | 168 |
MS.gene053027.t1 | MTR_1g112200 | 43.981 | 216 | 106 | 6 | 2 | 215 | 5 | 207 | 4.21e-47 | 154 |
MS.gene053027.t1 | MTR_1g060120 | 38.914 | 221 | 124 | 5 | 2 | 215 | 5 | 221 | 1.87e-43 | 145 |
MS.gene053027.t1 | MTR_2g041550 | 44.388 | 196 | 101 | 4 | 19 | 212 | 14 | 203 | 2.82e-43 | 145 |
MS.gene053027.t1 | MTR_8g020750 | 46.237 | 186 | 82 | 6 | 11 | 189 | 10 | 184 | 1.39e-40 | 138 |
MS.gene053027.t1 | MTR_2g041570 | 39.524 | 210 | 117 | 5 | 6 | 213 | 3 | 204 | 2.27e-38 | 132 |
MS.gene053027.t1 | MTR_2g041580 | 39.713 | 209 | 116 | 5 | 6 | 212 | 3 | 203 | 2.45e-38 | 132 |
MS.gene053027.t1 | MTR_8g020590 | 39.109 | 202 | 115 | 4 | 14 | 213 | 7 | 202 | 2.32e-35 | 124 |
MS.gene053027.t1 | MTR_3g019680 | 37.915 | 211 | 117 | 5 | 6 | 215 | 7 | 204 | 1.81e-33 | 119 |
MS.gene053027.t1 | MTR_8g020630 | 39.683 | 189 | 106 | 4 | 28 | 215 | 24 | 205 | 5.92e-33 | 118 |
MS.gene053027.t1 | MTR_8g007300 | 36.792 | 212 | 122 | 6 | 6 | 208 | 8 | 216 | 7.05e-33 | 118 |
MS.gene053027.t1 | MTR_3g019710 | 37.441 | 211 | 119 | 5 | 6 | 215 | 7 | 205 | 7.18e-33 | 118 |
MS.gene053027.t1 | MTR_8g020650 | 40.212 | 189 | 105 | 4 | 28 | 215 | 24 | 205 | 1.13e-32 | 117 |
MS.gene053027.t1 | MTR_3g019650 | 36.967 | 211 | 119 | 5 | 6 | 215 | 7 | 204 | 1.45e-31 | 114 |
MS.gene053027.t1 | MTR_2g045100 | 37.915 | 211 | 118 | 5 | 6 | 215 | 7 | 205 | 3.04e-31 | 114 |
MS.gene053027.t1 | MTR_4g010340 | 37.963 | 216 | 118 | 7 | 1 | 215 | 1 | 201 | 9.11e-31 | 112 |
MS.gene053027.t1 | MTR_2g036120 | 38.743 | 191 | 109 | 4 | 26 | 215 | 22 | 205 | 5.39e-30 | 110 |
MS.gene053027.t1 | MTR_8g020670 | 36.408 | 206 | 121 | 5 | 11 | 215 | 9 | 205 | 8.53e-30 | 110 |
MS.gene053027.t1 | MTR_8g020610 | 39.474 | 190 | 105 | 6 | 28 | 215 | 22 | 203 | 9.94e-30 | 110 |
MS.gene053027.t1 | MTR_8g020770 | 37.104 | 221 | 118 | 6 | 1 | 215 | 3 | 208 | 1.10e-29 | 110 |
MS.gene053027.t1 | MTR_2g086620 | 36.493 | 211 | 104 | 7 | 12 | 215 | 17 | 204 | 5.88e-29 | 108 |
MS.gene053027.t1 | MTR_2g086630 | 36.493 | 211 | 104 | 7 | 12 | 215 | 17 | 204 | 6.55e-29 | 107 |
MS.gene053027.t1 | MTR_8g020760 | 35.071 | 211 | 129 | 4 | 6 | 215 | 4 | 207 | 3.22e-28 | 106 |
MS.gene053027.t1 | MTR_2g044040 | 37.696 | 191 | 111 | 4 | 26 | 215 | 22 | 205 | 3.71e-28 | 105 |
MS.gene053027.t1 | MTR_2g086640 | 35.610 | 205 | 114 | 5 | 12 | 215 | 16 | 203 | 1.42e-27 | 104 |
MS.gene053027.t1 | MTR_2g019780 | 34.562 | 217 | 131 | 6 | 1 | 215 | 1 | 208 | 2.01e-27 | 104 |
MS.gene053027.t1 | MTR_3g096330 | 32.227 | 211 | 138 | 4 | 3 | 211 | 557 | 764 | 2.48e-27 | 109 |
MS.gene053027.t1 | MTR_4g052770 | 40.559 | 143 | 80 | 3 | 74 | 215 | 67 | 205 | 4.04e-27 | 103 |
MS.gene053027.t1 | MTR_4g052780 | 40.559 | 143 | 80 | 3 | 74 | 215 | 67 | 205 | 5.27e-27 | 102 |
MS.gene053027.t1 | MTR_0284s0010 | 36.649 | 191 | 113 | 4 | 26 | 215 | 22 | 205 | 1.74e-26 | 101 |
MS.gene053027.t1 | MTR_8g020763 | 35.429 | 175 | 106 | 3 | 43 | 215 | 17 | 186 | 2.42e-26 | 100 |
MS.gene053027.t1 | MTR_5g031460 | 34.715 | 193 | 118 | 4 | 24 | 215 | 20 | 205 | 3.26e-26 | 100 |
MS.gene053027.t1 | MTR_7g011340 | 36.126 | 191 | 114 | 4 | 26 | 215 | 22 | 205 | 3.74e-26 | 100 |
MS.gene053027.t1 | MTR_3g073170 | 35.648 | 216 | 128 | 6 | 1 | 215 | 1 | 206 | 5.55e-26 | 100 |
MS.gene053027.t1 | MTR_2g030915 | 54.667 | 75 | 20 | 1 | 93 | 167 | 1 | 61 | 7.41e-20 | 81.3 |
MS.gene053027.t1 | MTR_3g019810 | 32.461 | 191 | 113 | 7 | 24 | 212 | 126 | 302 | 1.34e-15 | 74.3 |
MS.gene053027.t1 | MTR_4g027415 | 38.889 | 126 | 71 | 3 | 26 | 150 | 22 | 142 | 1.42e-15 | 71.2 |
MS.gene053027.t1 | MTR_2g072560 | 38.017 | 121 | 68 | 4 | 1 | 120 | 1 | 115 | 1.02e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053027.t1 | AT5G39120 | 64.789 | 213 | 72 | 2 | 6 | 215 | 7 | 219 | 3.16e-92 | 270 |
MS.gene053027.t1 | AT5G39150 | 63.470 | 219 | 76 | 3 | 1 | 215 | 1 | 219 | 6.26e-91 | 266 |
MS.gene053027.t1 | AT5G39180 | 63.470 | 219 | 76 | 3 | 1 | 215 | 1 | 219 | 1.05e-90 | 266 |
MS.gene053027.t1 | AT5G38940 | 67.347 | 196 | 62 | 1 | 22 | 215 | 26 | 221 | 7.59e-90 | 264 |
MS.gene053027.t1 | AT5G38940 | 67.347 | 196 | 62 | 1 | 22 | 215 | 50 | 245 | 1.45e-89 | 264 |
MS.gene053027.t1 | AT5G39110 | 63.256 | 215 | 76 | 2 | 4 | 215 | 6 | 220 | 2.03e-89 | 263 |
MS.gene053027.t1 | AT5G38930 | 67.337 | 199 | 63 | 1 | 19 | 215 | 23 | 221 | 3.58e-89 | 262 |
MS.gene053027.t1 | AT5G39130 | 66.834 | 199 | 62 | 3 | 20 | 215 | 22 | 219 | 3.88e-88 | 259 |
MS.gene053027.t1 | AT5G39160 | 66.834 | 199 | 62 | 3 | 20 | 215 | 22 | 219 | 8.44e-88 | 258 |
MS.gene053027.t1 | AT5G39190 | 66.834 | 199 | 62 | 3 | 20 | 215 | 22 | 219 | 1.31e-87 | 258 |
MS.gene053027.t1 | AT3G05950 | 66.029 | 209 | 66 | 4 | 11 | 215 | 14 | 221 | 3.36e-87 | 257 |
MS.gene053027.t1 | AT5G38960 | 64.677 | 201 | 68 | 2 | 18 | 215 | 22 | 222 | 8.48e-87 | 256 |
MS.gene053027.t1 | AT5G38910 | 63.014 | 219 | 77 | 4 | 1 | 215 | 1 | 219 | 1.04e-86 | 256 |
MS.gene053027.t1 | AT4G14630 | 61.574 | 216 | 79 | 3 | 4 | 215 | 7 | 222 | 1.29e-85 | 253 |
MS.gene053027.t1 | AT5G39160 | 64.322 | 199 | 63 | 3 | 20 | 215 | 22 | 215 | 4.76e-83 | 246 |
MS.gene053027.t1 | AT3G04200 | 62.500 | 216 | 74 | 4 | 6 | 215 | 8 | 222 | 2.19e-80 | 240 |
MS.gene053027.t1 | AT5G39190 | 57.895 | 209 | 62 | 3 | 12 | 215 | 10 | 197 | 3.65e-74 | 223 |
MS.gene053027.t1 | AT5G39160 | 58.373 | 209 | 61 | 4 | 12 | 215 | 10 | 197 | 8.38e-74 | 222 |
MS.gene053027.t1 | AT3G04150 | 56.306 | 222 | 89 | 5 | 1 | 215 | 1 | 221 | 2.03e-73 | 222 |
MS.gene053027.t1 | AT3G04190 | 58.333 | 204 | 81 | 3 | 15 | 215 | 19 | 221 | 1.60e-72 | 220 |
MS.gene053027.t1 | AT3G04150 | 55.450 | 211 | 79 | 3 | 20 | 215 | 24 | 234 | 3.85e-71 | 217 |
MS.gene053027.t1 | AT3G04170 | 55.556 | 216 | 88 | 5 | 4 | 215 | 7 | 218 | 1.08e-70 | 215 |
MS.gene053027.t1 | AT3G04180 | 55.882 | 204 | 86 | 3 | 15 | 215 | 19 | 221 | 2.78e-69 | 211 |
MS.gene053027.t1 | AT5G38910 | 51.142 | 219 | 66 | 5 | 1 | 215 | 1 | 182 | 3.57e-60 | 187 |
MS.gene053027.t1 | AT1G02335 | 47.980 | 198 | 97 | 3 | 20 | 215 | 22 | 215 | 9.58e-57 | 179 |
MS.gene053027.t1 | AT3G05930 | 46.948 | 213 | 105 | 4 | 6 | 215 | 8 | 215 | 4.11e-56 | 178 |
MS.gene053027.t1 | AT1G09560 | 49.746 | 197 | 93 | 3 | 22 | 216 | 24 | 216 | 1.39e-55 | 176 |
MS.gene053027.t1 | AT3G62020 | 48.341 | 211 | 99 | 5 | 11 | 215 | 9 | 215 | 2.75e-55 | 176 |
MS.gene053027.t1 | AT1G18970 | 45.833 | 216 | 107 | 5 | 4 | 217 | 13 | 220 | 2.44e-54 | 173 |
MS.gene053027.t1 | AT1G18980 | 47.222 | 216 | 104 | 5 | 4 | 217 | 13 | 220 | 3.06e-54 | 173 |
MS.gene053027.t1 | AT5G26700 | 47.368 | 209 | 91 | 6 | 11 | 215 | 16 | 209 | 4.17e-54 | 172 |
MS.gene053027.t1 | AT3G62020 | 48.333 | 180 | 88 | 3 | 39 | 215 | 9 | 186 | 8.13e-48 | 155 |
MS.gene053027.t1 | AT1G10460 | 42.714 | 199 | 107 | 5 | 22 | 215 | 19 | 215 | 1.03e-47 | 156 |
MS.gene053027.t1 | AT3G10080 | 41.791 | 201 | 109 | 4 | 19 | 215 | 23 | 219 | 2.50e-44 | 148 |
MS.gene053027.t1 | AT3G10080 | 41.584 | 202 | 110 | 4 | 18 | 215 | 93 | 290 | 9.60e-44 | 149 |
MS.gene053027.t1 | AT5G20630 | 45.783 | 166 | 84 | 3 | 26 | 189 | 22 | 183 | 2.79e-40 | 137 |
MS.gene053027.t1 | AT5G61750 | 41.304 | 184 | 103 | 3 | 6 | 187 | 3 | 183 | 7.07e-37 | 128 |
MS.gene053027.t1 | AT1G74820 | 38.342 | 193 | 111 | 4 | 25 | 215 | 39 | 225 | 2.29e-34 | 122 |
MS.gene053027.t1 | AT1G72610 | 38.624 | 189 | 108 | 4 | 26 | 212 | 19 | 201 | 1.82e-32 | 117 |
MS.gene053027.t1 | AT5G38950 | 64.062 | 64 | 23 | 0 | 144 | 207 | 2 | 65 | 1.96e-20 | 82.8 |
MS.gene053027.t1 | AT5G39100 | 66.000 | 50 | 17 | 0 | 4 | 53 | 6 | 55 | 3.16e-16 | 70.5 |
Find 44 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAATTGCTAATGCTGTATT+TGG | 0.140631 | 6.2:-1304959 | MS.gene053027:CDS |
TTGTGATAACACCTGGATTT+TGG | 0.286222 | 6.2:+1304978 | None:intergenic |
GTAGCGGTTAATGAGATATT+AGG | 0.300587 | 6.2:-1305265 | MS.gene053027:CDS |
TTCACTTTCAATTGAATGTT+GGG | 0.325573 | 6.2:-1305036 | MS.gene053027:CDS |
AGCATACATACCACCATTCT+TGG | 0.326838 | 6.2:+1305558 | None:intergenic |
GGAAATGCTCTCGCCATTGC+TGG | 0.341695 | 6.2:-1305010 | MS.gene053027:CDS |
TCATTTGGTGTAGCAAGCTT+TGG | 0.358003 | 6.2:+1305349 | None:intergenic |
TTGGAGGGTACTCTTTATGT+TGG | 0.400644 | 6.2:-1305142 | MS.gene053027:CDS |
TGAAAGTGAATGAGACCAAT+TGG | 0.411740 | 6.2:+1305049 | None:intergenic |
CCACTATGTTATTGTCCACT+TGG | 0.415021 | 6.2:+1304894 | None:intergenic |
ATTCACTTTCAATTGAATGT+TGG | 0.422768 | 6.2:-1305037 | MS.gene053027:CDS |
TGGAGGGTACTCTTTATGTT+GGG | 0.430272 | 6.2:-1305141 | MS.gene053027:CDS |
TTTCAATTGAATGTTGGGTA+TGG | 0.435827 | 6.2:-1305031 | MS.gene053027:CDS |
ATAAGTATCTCTGTGGCTCT+AGG | 0.448325 | 6.2:+1305169 | None:intergenic |
CGCATTGACTTTGCAGCTAG+AGG | 0.454346 | 6.2:-1305214 | MS.gene053027:CDS |
ACAAAAGTCTTGTAGAGGGC+TGG | 0.457530 | 6.2:+1305597 | None:intergenic |
AATATCTCATTAACCGCTAC+TGG | 0.462271 | 6.2:+1305268 | None:intergenic |
GATGTGTTTGTGTTTCCAAT+TGG | 0.465821 | 6.2:-1305064 | MS.gene053027:CDS |
ATTGTCCACTTGGAAAGCTT+TGG | 0.467417 | 6.2:+1304904 | None:intergenic |
CAAAAGTCTTGTAGAGGGCT+GGG | 0.476086 | 6.2:+1305598 | None:intergenic |
TTGTAGAGGGCTGGGATCAA+AGG | 0.521527 | 6.2:+1305606 | None:intergenic |
GGCTAAGGCACATGATGCTA+AGG | 0.530501 | 6.2:+1305627 | None:intergenic |
GTGGCTCTAGGGTGAGTATG+TGG | 0.535688 | 6.2:+1305181 | None:intergenic |
AGAGATACTTATAGTGTTGG+AGG | 0.538914 | 6.2:-1305158 | MS.gene053027:CDS |
TAAGTATCTCTGTGGCTCTA+GGG | 0.540205 | 6.2:+1305170 | None:intergenic |
ACATGATGCTAAGGCAAAGA+AGG | 0.540615 | 6.2:+1305636 | None:intergenic |
CACAGAGATACTTATAGTGT+TGG | 0.549151 | 6.2:-1305161 | MS.gene053027:CDS |
GGACTTAGCAGCCAAAATCC+AGG | 0.549743 | 6.2:-1304989 | MS.gene053027:CDS |
TTAGCAATTGTGATAACACC+TGG | 0.567682 | 6.2:+1304971 | None:intergenic |
TTGGCTGCTAAGTCCAGCAA+TGG | 0.600072 | 6.2:+1304997 | None:intergenic |
AGGGCTGGGATCAAAGGCTA+AGG | 0.602904 | 6.2:+1305612 | None:intergenic |
GCCACACAAAAGTCTTGTAG+AGG | 0.603085 | 6.2:+1305592 | None:intergenic |
ATATTAGGATTAAACACACT+TGG | 0.605718 | 6.2:-1305250 | MS.gene053027:CDS |
CCAAGTGGACAATAACATAG+TGG | 0.613774 | 6.2:-1304894 | MS.gene053027:CDS |
ATCAATGACACCAAGAATGG+TGG | 0.627435 | 6.2:-1305568 | MS.gene053027:intron |
GCTATCAATGACACCAAGAA+TGG | 0.633041 | 6.2:-1305571 | MS.gene053027:CDS |
GAGATACTTATAGTGTTGGA+GGG | 0.636722 | 6.2:-1305157 | MS.gene053027:CDS |
ATCACAAAAGTACTCAACAA+AGG | 0.644517 | 6.2:-1305088 | MS.gene053027:CDS |
TTCAAAAGTGACACCAGTAG+CGG | 0.645045 | 6.2:-1305281 | MS.gene053027:CDS |
CCACACAAAAGTCTTGTAGA+GGG | 0.655758 | 6.2:+1305593 | None:intergenic |
GGAAACACATCAAATCCACT+TGG | 0.655822 | 6.2:-1305304 | MS.gene053027:CDS |
TCTCACCAAAGCTTTCCAAG+TGG | 0.665947 | 6.2:-1304909 | MS.gene053027:CDS |
GCTCTAGGGTGAGTATGTGG+AGG | 0.704542 | 6.2:+1305184 | None:intergenic |
CAACACTATAAGTATCTCTG+TGG | 0.718300 | 6.2:+1305162 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCTTTTAAATTAACAATATT+TGG | - | chr6.2:1304984-1305003 | MS.gene053027:CDS | 10.0% |
!!! | TTTATTTATTTTTAGTTTTC+TGG | - | chr6.2:1305018-1305037 | MS.gene053027:CDS | 10.0% |
!!! | ACAATCTTCAAAAACAATTT+TGG | - | chr6.2:1305649-1305668 | MS.gene053027:CDS | 20.0% |
!!! | CAATCTTCAAAAACAATTTT+GGG | - | chr6.2:1305650-1305669 | MS.gene053027:CDS | 20.0% |
! | ATATTAGGATTAAACACACT+TGG | - | chr6.2:1305270-1305289 | MS.gene053027:CDS | 25.0% |
! | ATTCACTTTCAATTGAATGT+TGG | - | chr6.2:1305483-1305502 | MS.gene053027:intron | 25.0% |
! | TTCACTTTCAATTGAATGTT+GGG | - | chr6.2:1305484-1305503 | MS.gene053027:intron | 25.0% |
!! | ACCAAATGATTTCTTTTTCT+CGG | - | chr6.2:1305185-1305204 | MS.gene053027:CDS | 25.0% |
!!! | AGAACTTCTGAAGAAATTTT+TGG | + | chr6.2:1305594-1305613 | None:intergenic | 25.0% |
ACAATTGCTAATGCTGTATT+TGG | - | chr6.2:1305561-1305580 | MS.gene053027:intron | 30.0% | |
ACCGAGAAAAAGAAATCATT+TGG | + | chr6.2:1305189-1305208 | None:intergenic | 30.0% | |
TTTCAATTGAATGTTGGGTA+TGG | - | chr6.2:1305489-1305508 | MS.gene053027:intron | 30.0% | |
! | TCTTCAAAAACAATTTTGGG+TGG | - | chr6.2:1305653-1305672 | MS.gene053027:CDS | 30.0% |
! | TGATTTCTTTTTCTCGGTTA+AGG | - | chr6.2:1305191-1305210 | MS.gene053027:CDS | 30.0% |
! | TGTGAATGGAAAATTTTGCA+AGG | - | chr6.2:1305146-1305165 | MS.gene053027:CDS | 30.0% |
!! | ATCACAAAAGTACTCAACAA+AGG | - | chr6.2:1305432-1305451 | MS.gene053027:intron | 30.0% |
AATATCTCATTAACCGCTAC+TGG | + | chr6.2:1305255-1305274 | None:intergenic | 35.0% | |
CAACACTATAAGTATCTCTG+TGG | + | chr6.2:1305361-1305380 | None:intergenic | 35.0% | |
CACAGAGATACTTATAGTGT+TGG | - | chr6.2:1305359-1305378 | MS.gene053027:CDS | 35.0% | |
GATGTGTTTGTGTTTCCAAT+TGG | - | chr6.2:1305456-1305475 | MS.gene053027:intron | 35.0% | |
GTAGCGGTTAATGAGATATT+AGG | - | chr6.2:1305255-1305274 | MS.gene053027:CDS | 35.0% | |
TGAAAGTGAATGAGACCAAT+TGG | + | chr6.2:1305474-1305493 | None:intergenic | 35.0% | |
TTAGCAATTGTGATAACACC+TGG | + | chr6.2:1305552-1305571 | None:intergenic | 35.0% | |
! | AGAGATACTTATAGTGTTGG+AGG | - | chr6.2:1305362-1305381 | MS.gene053027:CDS | 35.0% |
! | GAGATACTTATAGTGTTGGA+GGG | - | chr6.2:1305363-1305382 | MS.gene053027:CDS | 35.0% |
! | TGAGTACTTTTGTGATGAGA+CGG | + | chr6.2:1305428-1305447 | None:intergenic | 35.0% |
! | TGTTTTGCAGTCTTTGTGAA+TGG | - | chr6.2:1305132-1305151 | MS.gene053027:CDS | 35.0% |
! | TTCTTTTTCTCGGTTAAGGA+AGG | - | chr6.2:1305195-1305214 | MS.gene053027:CDS | 35.0% |
! | TTGTGATAACACCTGGATTT+TGG | + | chr6.2:1305545-1305564 | None:intergenic | 35.0% |
ACATGATGCTAAGGCAAAGA+AGG | + | chr6.2:1304887-1304906 | None:intergenic | 40.0% | |
AGCATACATACCACCATTCT+TGG | + | chr6.2:1304965-1304984 | None:intergenic | 40.0% | |
ATAAGTATCTCTGTGGCTCT+AGG | + | chr6.2:1305354-1305373 | None:intergenic | 40.0% | |
ATCAATGACACCAAGAATGG+TGG | - | chr6.2:1304952-1304971 | MS.gene053027:CDS | 40.0% | |
ATTGTCCACTTGGAAAGCTT+TGG | + | chr6.2:1305619-1305638 | None:intergenic | 40.0% | |
CCAAGTGGACAATAACATAG+TGG | - | chr6.2:1305626-1305645 | MS.gene053027:CDS | 40.0% | |
CCACTATGTTATTGTCCACT+TGG | + | chr6.2:1305629-1305648 | None:intergenic | 40.0% | |
GCTATCAATGACACCAAGAA+TGG | - | chr6.2:1304949-1304968 | MS.gene053027:CDS | 40.0% | |
GGAAACACATCAAATCCACT+TGG | - | chr6.2:1305216-1305235 | MS.gene053027:CDS | 40.0% | |
TTCAAAAGTGACACCAGTAG+CGG | - | chr6.2:1305239-1305258 | MS.gene053027:CDS | 40.0% | |
! | CCACACAAAAGTCTTGTAGA+GGG | + | chr6.2:1304930-1304949 | None:intergenic | 40.0% |
! | TAAGTATCTCTGTGGCTCTA+GGG | + | chr6.2:1305353-1305372 | None:intergenic | 40.0% |
! | TTTGTGATGAGACGGTTTTC+TGG | + | chr6.2:1305420-1305439 | None:intergenic | 40.0% |
!! | TCATTTGGTGTAGCAAGCTT+TGG | + | chr6.2:1305174-1305193 | None:intergenic | 40.0% |
!! | TGGAGGGTACTCTTTATGTT+GGG | - | chr6.2:1305379-1305398 | MS.gene053027:CDS | 40.0% |
!! | TTGGAGGGTACTCTTTATGT+TGG | - | chr6.2:1305378-1305397 | MS.gene053027:CDS | 40.0% |
TCTCACCAAAGCTTTCCAAG+TGG | - | chr6.2:1305611-1305630 | MS.gene053027:CDS | 45.0% | |
! | ACAAAAGTCTTGTAGAGGGC+TGG | + | chr6.2:1304926-1304945 | None:intergenic | 45.0% |
! | CAAAAGTCTTGTAGAGGGCT+GGG | + | chr6.2:1304925-1304944 | None:intergenic | 45.0% |
! | CCCTCTACAAGACTTTTGTG+TGG | - | chr6.2:1304927-1304946 | MS.gene053027:CDS | 45.0% |
! | GCCACACAAAAGTCTTGTAG+AGG | + | chr6.2:1304931-1304950 | None:intergenic | 45.0% |
!!! | GGTGTCACTTTTGAACCAAG+TGG | + | chr6.2:1305234-1305253 | None:intergenic | 45.0% |
GGACTTAGCAGCCAAAATCC+AGG | - | chr6.2:1305531-1305550 | MS.gene053027:intron | 50.0% | |
GGCTAAGGCACATGATGCTA+AGG | + | chr6.2:1304896-1304915 | None:intergenic | 50.0% | |
TTGGCTGCTAAGTCCAGCAA+TGG | + | chr6.2:1305526-1305545 | None:intergenic | 50.0% | |
TTGTAGAGGGCTGGGATCAA+AGG | + | chr6.2:1304917-1304936 | None:intergenic | 50.0% | |
!! | CGCATTGACTTTGCAGCTAG+AGG | - | chr6.2:1305306-1305325 | MS.gene053027:CDS | 50.0% |
AGGGCTGGGATCAAAGGCTA+AGG | + | chr6.2:1304911-1304930 | None:intergenic | 55.0% | |
GGAAATGCTCTCGCCATTGC+TGG | - | chr6.2:1305510-1305529 | MS.gene053027:intron | 55.0% | |
!! | GCTCTAGGGTGAGTATGTGG+AGG | + | chr6.2:1305339-1305358 | None:intergenic | 55.0% |
!! | GTGGCTCTAGGGTGAGTATG+TGG | + | chr6.2:1305342-1305361 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 1304856 | 1305686 | 1304856 | ID=MS.gene053027 |
chr6.2 | mRNA | 1304856 | 1305686 | 1304856 | ID=MS.gene053027.t1;Parent=MS.gene053027 |
chr6.2 | exon | 1305569 | 1305686 | 1305569 | ID=MS.gene053027.t1.exon1;Parent=MS.gene053027.t1 |
chr6.2 | CDS | 1305569 | 1305686 | 1305569 | ID=cds.MS.gene053027.t1;Parent=MS.gene053027.t1 |
chr6.2 | exon | 1304856 | 1305400 | 1304856 | ID=MS.gene053027.t1.exon2;Parent=MS.gene053027.t1 |
chr6.2 | CDS | 1304856 | 1305400 | 1304856 | ID=cds.MS.gene053027.t1;Parent=MS.gene053027.t1 |
Gene Sequence |
Protein sequence |