Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069486.t1 | XP_003620188.1 | 95.3 | 213 | 10 | 0 | 1 | 213 | 1 | 213 | 1.90E-117 | 431.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069486.t1 | P13087 | 44.6 | 213 | 101 | 5 | 5 | 209 | 11 | 214 | 8.9e-44 | 178.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069486.t1 | G7KKR0 | 95.3 | 213 | 10 | 0 | 1 | 213 | 1 | 213 | 1.3e-117 | 431.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene069486 | -0.824848 | 6.46E-54 | -1.69E-46 |
| MS.gene049488 | MS.gene069486 | -0.806308 | 8.76E-50 | -1.69E-46 |
| MS.gene049661 | MS.gene069486 | -0.809849 | 1.54E-50 | -1.69E-46 |
| MS.gene050380 | MS.gene069486 | 0.837739 | 4.35E-57 | -1.69E-46 |
| MS.gene050670 | MS.gene069486 | -0.820402 | 6.99E-53 | -1.69E-46 |
| MS.gene050926 | MS.gene069486 | 0.816692 | 4.85E-52 | -1.69E-46 |
| MS.gene050971 | MS.gene069486 | -0.818192 | 2.23E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene069486 | -0.806032 | 1.00E-49 | -1.69E-46 |
| MS.gene051877 | MS.gene069486 | -0.821522 | 3.86E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene069486 | 0.83898 | 2.08E-57 | -1.69E-46 |
| MS.gene052253 | MS.gene069486 | -0.819513 | 1.12E-52 | -1.69E-46 |
| MS.gene05233 | MS.gene069486 | 0.833536 | 5.04E-56 | -1.69E-46 |
| MS.gene05234 | MS.gene069486 | 0.813458 | 2.53E-51 | -1.69E-46 |
| MS.gene053758 | MS.gene069486 | -0.809395 | 1.93E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene069486 | -0.81898 | 1.48E-52 | -1.69E-46 |
| MS.gene054290 | MS.gene069486 | 0.817232 | 3.67E-52 | -1.69E-46 |
| MS.gene054435 | MS.gene069486 | 0.816555 | 5.21E-52 | -1.69E-46 |
| MS.gene054437 | MS.gene069486 | 0.810444 | 1.15E-50 | -1.69E-46 |
| MS.gene054447 | MS.gene069486 | 0.823039 | 1.72E-53 | -1.69E-46 |
| MS.gene054486 | MS.gene069486 | -0.808069 | 3.71E-50 | -1.69E-46 |
| MS.gene055486 | MS.gene069486 | -0.805005 | 1.64E-49 | -1.69E-46 |
| MS.gene055601 | MS.gene069486 | 0.813931 | 1.99E-51 | -1.69E-46 |
| MS.gene055909 | MS.gene069486 | -0.815271 | 1.01E-51 | -1.69E-46 |
| MS.gene055911 | MS.gene069486 | -0.820609 | 6.27E-53 | -1.69E-46 |
| MS.gene056330 | MS.gene069486 | 0.828147 | 1.06E-54 | -1.69E-46 |
| MS.gene056511 | MS.gene069486 | -0.815993 | 6.95E-52 | -1.69E-46 |
| MS.gene056899 | MS.gene069486 | 0.819967 | 8.79E-53 | -1.69E-46 |
| MS.gene057146 | MS.gene069486 | -0.824219 | 9.09E-54 | -1.69E-46 |
| MS.gene057476 | MS.gene069486 | -0.807518 | 4.86E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene069486 | -0.84725 | 1.30E-59 | -1.69E-46 |
| MS.gene057823 | MS.gene069486 | -0.85919 | 4.91E-63 | -1.69E-46 |
| MS.gene057888 | MS.gene069486 | -0.800189 | 1.62E-48 | -1.69E-46 |
| MS.gene058218 | MS.gene069486 | 0.840152 | 1.03E-57 | -1.69E-46 |
| MS.gene058660 | MS.gene069486 | -0.81533 | 9.77E-52 | -1.69E-46 |
| MS.gene059043 | MS.gene069486 | 0.811033 | 8.57E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene069486 | -0.807285 | 5.45E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene069486 | -0.841851 | 3.70E-58 | -1.69E-46 |
| MS.gene060837 | MS.gene069486 | -0.824632 | 7.26E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069486.t1 | MTR_6g078290 | 95.305 | 213 | 10 | 0 | 1 | 213 | 1 | 213 | 3.71e-152 | 421 |
| MS.gene069486.t1 | MTR_6g078120 | 58.291 | 199 | 81 | 2 | 15 | 212 | 16 | 213 | 2.30e-75 | 226 |
| MS.gene069486.t1 | MTR_6g078140 | 58.794 | 199 | 80 | 2 | 15 | 212 | 16 | 213 | 5.16e-75 | 225 |
| MS.gene069486.t1 | MTR_6g078280 | 53.266 | 199 | 83 | 6 | 17 | 210 | 17 | 210 | 2.63e-63 | 196 |
| MS.gene069486.t1 | MTR_6g078250 | 49.289 | 211 | 95 | 5 | 1 | 209 | 1 | 201 | 1.99e-59 | 186 |
| MS.gene069486.t1 | MTR_7g037410 | 47.644 | 191 | 87 | 4 | 22 | 210 | 21 | 200 | 2.22e-54 | 172 |
| MS.gene069486.t1 | MTR_6g078260 | 42.424 | 198 | 96 | 5 | 15 | 210 | 16 | 197 | 8.49e-48 | 155 |
| MS.gene069486.t1 | MTR_6g078100 | 43.836 | 219 | 98 | 10 | 1 | 210 | 1 | 203 | 1.88e-47 | 155 |
| MS.gene069486.t1 | MTR_6g078070 | 42.326 | 215 | 105 | 8 | 1 | 210 | 1 | 201 | 1.43e-45 | 150 |
| MS.gene069486.t1 | MTR_3g106585 | 32.727 | 220 | 113 | 10 | 3 | 213 | 5 | 198 | 2.31e-21 | 88.2 |
| MS.gene069486.t1 | MTR_6g065460 | 33.333 | 213 | 126 | 7 | 1 | 209 | 1 | 201 | 3.37e-21 | 87.4 |
| MS.gene069486.t1 | MTR_3g014870 | 33.178 | 214 | 111 | 9 | 6 | 210 | 11 | 201 | 8.95e-21 | 86.3 |
| MS.gene069486.t1 | MTR_2g073010 | 31.707 | 205 | 109 | 8 | 1 | 200 | 8 | 186 | 2.03e-20 | 85.1 |
| MS.gene069486.t1 | MTR_0100s0150 | 33.333 | 207 | 116 | 8 | 11 | 210 | 8 | 199 | 3.06e-20 | 84.7 |
| MS.gene069486.t1 | MTR_3g014820 | 32.536 | 209 | 117 | 8 | 11 | 210 | 8 | 201 | 3.32e-20 | 84.7 |
| MS.gene069486.t1 | MTR_3g106620 | 28.636 | 220 | 124 | 8 | 3 | 213 | 5 | 200 | 2.46e-19 | 82.8 |
| MS.gene069486.t1 | MTR_0211s0080 | 32.212 | 208 | 114 | 9 | 11 | 210 | 8 | 196 | 3.82e-19 | 82.0 |
| MS.gene069486.t1 | MTR_8g059790 | 34.574 | 188 | 102 | 9 | 30 | 210 | 29 | 202 | 3.90e-18 | 79.3 |
| MS.gene069486.t1 | MTR_0302s0030 | 31.401 | 207 | 121 | 7 | 11 | 210 | 8 | 200 | 3.91e-18 | 79.3 |
| MS.gene069486.t1 | MTR_8g461050 | 30.435 | 207 | 123 | 7 | 11 | 210 | 8 | 200 | 3.95e-18 | 79.3 |
| MS.gene069486.t1 | MTR_0084s0030 | 31.884 | 207 | 120 | 8 | 11 | 210 | 8 | 200 | 9.97e-18 | 78.2 |
| MS.gene069486.t1 | MTR_8g060550 | 30.622 | 209 | 118 | 9 | 11 | 210 | 8 | 198 | 9.96e-16 | 72.8 |
| MS.gene069486.t1 | MTR_8g461690 | 30.622 | 209 | 118 | 9 | 11 | 210 | 8 | 198 | 9.96e-16 | 72.8 |
| MS.gene069486.t1 | MTR_7g108815 | 33.333 | 180 | 97 | 10 | 28 | 200 | 25 | 188 | 1.01e-14 | 70.1 |
| MS.gene069486.t1 | MTR_6g078040 | 49.351 | 77 | 35 | 3 | 103 | 177 | 1 | 75 | 1.15e-14 | 67.4 |
| MS.gene069486.t1 | MTR_6g059650 | 30.808 | 198 | 111 | 8 | 25 | 213 | 23 | 203 | 3.23e-14 | 68.9 |
| MS.gene069486.t1 | MTR_6g059410 | 31.019 | 216 | 117 | 9 | 1 | 209 | 1 | 191 | 2.39e-12 | 63.9 |
| MS.gene069486.t1 | MTR_2g072980 | 30.882 | 204 | 119 | 8 | 1 | 202 | 5 | 188 | 4.79e-12 | 62.8 |
| MS.gene069486.t1 | MTR_6g017225 | 28.283 | 198 | 121 | 7 | 5 | 200 | 11 | 189 | 8.80e-12 | 63.5 |
| MS.gene069486.t1 | MTR_6g059760 | 32.212 | 208 | 113 | 12 | 10 | 209 | 12 | 199 | 3.85e-11 | 60.5 |
| MS.gene069486.t1 | MTR_6g009650 | 28.365 | 208 | 127 | 6 | 5 | 209 | 11 | 199 | 7.23e-11 | 59.7 |
| MS.gene069486.t1 | MTR_6g009563 | 27.619 | 210 | 134 | 6 | 3 | 209 | 6 | 200 | 8.63e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069486.t1 | AT1G17860 | 45.933 | 209 | 91 | 7 | 4 | 210 | 5 | 193 | 4.39e-50 | 161 |
| MS.gene069486.t1 | AT1G73260 | 35.407 | 209 | 116 | 9 | 8 | 212 | 12 | 205 | 4.69e-24 | 95.5 |
| MS.gene069486.t1 | AT1G73325 | 32.558 | 215 | 119 | 11 | 5 | 212 | 8 | 203 | 1.29e-17 | 78.6 |
Find 75 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCTAATAACACCTTTCTT+AGG | 0.178129 | 6.4:+53320813 | None:intergenic |
| GCAGGAATGTTGGGGTCTTT+AGG | 0.226794 | 6.4:-53320560 | MS.gene069486:CDS |
| ACTCTTCACATGCTGTATTA+AGG | 0.241608 | 6.4:+53320763 | None:intergenic |
| CAGGAATGTTGGGGTCTTTA+GGG | 0.264531 | 6.4:-53320559 | MS.gene069486:CDS |
| ACCCTAAGAAAGGTGTTATT+AGG | 0.266748 | 6.4:-53320815 | MS.gene069486:CDS |
| ACACCTTTCTTAGGGTTAAC+AGG | 0.290681 | 6.4:+53320822 | None:intergenic |
| CCCTAAGAAAGGTGTTATTA+GGG | 0.319854 | 6.4:-53320814 | MS.gene069486:CDS |
| GTCACTACCGGTGGGGTTCT+TGG | 0.322883 | 6.4:-53320690 | MS.gene069486:CDS |
| TAATATGTATACTGATTTCA+TGG | 0.347087 | 6.4:+53321109 | None:intergenic |
| ATTGTCAACGGTGTCCTTGC+CGG | 0.371760 | 6.4:+53320662 | None:intergenic |
| CTCAATGTTGTAGTGGTTGA+GGG | 0.376701 | 6.4:-53320873 | MS.gene069486:CDS |
| GACCGTCACATGGGGTTGTC+GGG | 0.380454 | 6.4:+53320961 | None:intergenic |
| CTGATGTGCCATACAAAGTT+AGG | 0.386416 | 6.4:-53320506 | MS.gene069486:CDS |
| AGCTTCTCCGAGCAAGGGTT+GGG | 0.386871 | 6.4:+53321061 | None:intergenic |
| CTCTTCACATGCTGTATTAA+GGG | 0.397035 | 6.4:+53320764 | None:intergenic |
| GGTTGACACAGAAGGCAAAA+AGG | 0.410166 | 6.4:-53321018 | MS.gene069486:CDS |
| AGGTCATGTGCAGGAATGTT+GGG | 0.410673 | 6.4:-53320569 | MS.gene069486:CDS |
| CCCTAATAACACCTTTCTTA+GGG | 0.414565 | 6.4:+53320814 | None:intergenic |
| ACTCAATGTTGTAGTGGTTG+AGG | 0.421669 | 6.4:-53320874 | MS.gene069486:CDS |
| GCAAGGACACCGTTGACAAT+TGG | 0.438091 | 6.4:-53320659 | MS.gene069486:CDS |
| TTGTCAACGGTGTCCTTGCC+GGG | 0.438512 | 6.4:+53320663 | None:intergenic |
| GGGTCTTTAGGGATAGTAAT+GGG | 0.453756 | 6.4:-53320548 | MS.gene069486:CDS |
| GGTTGGAACCTAACTTTGTA+TGG | 0.454358 | 6.4:+53320498 | None:intergenic |
| CAGCTTCTCCGAGCAAGGGT+TGG | 0.454758 | 6.4:+53321060 | None:intergenic |
| TCACATGGGGTTGTCGGGAC+TGG | 0.470206 | 6.4:+53320966 | None:intergenic |
| ACAACCCCATGTGACGGTCG+TGG | 0.470483 | 6.4:-53320957 | MS.gene069486:CDS |
| GGGCCTTGTGTTGTCGGTAG+TGG | 0.472611 | 6.4:-53320936 | MS.gene069486:CDS |
| GGTCGTGGGCCTTGTGTTGT+CGG | 0.474565 | 6.4:-53320942 | MS.gene069486:CDS |
| CGACCGTCACATGGGGTTGT+CGG | 0.478237 | 6.4:+53320960 | None:intergenic |
| ACCCCTGTTAACCCTAAGAA+AGG | 0.480020 | 6.4:-53320825 | MS.gene069486:CDS |
| CACCTTTCTTAGGGTTAACA+GGG | 0.482056 | 6.4:+53320823 | None:intergenic |
| TCTGTGTCAACCACTTGCTC+AGG | 0.489109 | 6.4:+53321029 | None:intergenic |
| TTGTCCACCCAACCCTTGCT+CGG | 0.489235 | 6.4:-53321068 | MS.gene069486:CDS |
| TTGAGTGGACATGTCTCGTT+TGG | 0.518641 | 6.4:+53320891 | None:intergenic |
| CATGTGAAGAGTCCACGATA+TGG | 0.519311 | 6.4:-53320752 | MS.gene069486:CDS |
| AAATACTTCAAGCAGATGGT+TGG | 0.522101 | 6.4:+53320481 | None:intergenic |
| AGCGTCAGCTTCTCCGAGCA+AGG | 0.525965 | 6.4:+53321055 | None:intergenic |
| ATGGGGTTGTCGGGACTGGT+CGG | 0.526887 | 6.4:+53320970 | None:intergenic |
| TTGAAAATACTTCAAGCAGA+TGG | 0.530226 | 6.4:+53320477 | None:intergenic |
| CAAGGCCCACGACCGTCACA+TGG | 0.530644 | 6.4:+53320951 | None:intergenic |
| GAGCAAGGGTTGGGTGGACA+AGG | 0.544353 | 6.4:+53321070 | None:intergenic |
| AAGGTCATGTGCAGGAATGT+TGG | 0.544552 | 6.4:-53320570 | MS.gene069486:CDS |
| GGTGGGGTTCTTGGAAATCC+CGG | 0.552765 | 6.4:-53320681 | MS.gene069486:CDS |
| TTGATTCCTCATCTGGACAA+TGG | 0.554639 | 6.4:-53320716 | MS.gene069486:CDS |
| ATCATCAAGCGTCCATATCG+TGG | 0.559535 | 6.4:+53320740 | None:intergenic |
| CAATGGTTTGTCACTACCGG+TGG | 0.561342 | 6.4:-53320699 | MS.gene069486:CDS |
| CAACCCCATGTGACGGTCGT+GGG | 0.563780 | 6.4:-53320956 | MS.gene069486:CDS |
| AATGGTTTGTCACTACCGGT+GGG | 0.564160 | 6.4:-53320698 | MS.gene069486:CDS |
| GGACAATGGTTTGTCACTAC+CGG | 0.566652 | 6.4:-53320702 | MS.gene069486:CDS |
| AAGGCCCACGACCGTCACAT+GGG | 0.567219 | 6.4:+53320952 | None:intergenic |
| TGTCTTGATGTTAAGATCAG+TGG | 0.570079 | 6.4:+53320788 | None:intergenic |
| AAACCACTACCGACAACACA+AGG | 0.571628 | 6.4:+53320933 | None:intergenic |
| TGACGCTTCACCTGAGCAAG+TGG | 0.575987 | 6.4:-53321039 | MS.gene069486:CDS |
| AATCTTGAACCAATTGTCAA+CGG | 0.580218 | 6.4:+53320650 | None:intergenic |
| GGGGTCTTTAGGGATAGTAA+TGG | 0.589720 | 6.4:-53320549 | MS.gene069486:CDS |
| TTCTCCGAGCAAGGGTTGGG+TGG | 0.598373 | 6.4:+53321064 | None:intergenic |
| GACAAACCATTGTCCAGATG+AGG | 0.609229 | 6.4:+53320710 | None:intergenic |
| GTCCCGACAACCCCATGTGA+CGG | 0.611299 | 6.4:-53320963 | MS.gene069486:CDS |
| TGCAGAAATCACATACCGTA+GGG | 0.614159 | 6.4:+53320592 | None:intergenic |
| GCGTCAGCTTCTCCGAGCAA+GGG | 0.616662 | 6.4:+53321056 | None:intergenic |
| TCAACCACTACAACATTGAG+TGG | 0.618412 | 6.4:+53320876 | None:intergenic |
| GGTCATGTGCAGGAATGTTG+GGG | 0.620344 | 6.4:-53320568 | MS.gene069486:CDS |
| GAGCAAGTGGTTGACACAGA+AGG | 0.621958 | 6.4:-53321026 | MS.gene069486:CDS |
| ATTTCTGCAAGGTCATGTGC+AGG | 0.628252 | 6.4:-53320578 | MS.gene069486:CDS |
| TTGCAGAAATCACATACCGT+AGG | 0.628538 | 6.4:+53320591 | None:intergenic |
| TACGGTATGTGATTTCTGCA+AGG | 0.630885 | 6.4:-53320589 | MS.gene069486:CDS |
| GGGATTTCCAAGAACCCCAC+CGG | 0.635438 | 6.4:+53320683 | None:intergenic |
| AGGCCCACGACCGTCACATG+GGG | 0.644940 | 6.4:+53320953 | None:intergenic |
| ATGTCCACTCAATGTTGTAG+TGG | 0.670052 | 6.4:-53320880 | MS.gene069486:CDS |
| TAGTAATGGGAACCAGCGTG+TGG | 0.674297 | 6.4:-53320535 | MS.gene069486:CDS |
| ATGGTTTGTCACTACCGGTG+GGG | 0.675340 | 6.4:-53320697 | MS.gene069486:CDS |
| ACCTTTCTTAGGGTTAACAG+GGG | 0.679673 | 6.4:+53320824 | None:intergenic |
| CATCAGTGAGAGCCACACGC+TGG | 0.681901 | 6.4:+53320523 | None:intergenic |
| GGTTCTTGGAAATCCCGGCA+AGG | 0.687124 | 6.4:-53320676 | MS.gene069486:CDS |
| TCGGATGTAGTAGTCTACTC+CGG | 0.689014 | 6.4:+53320989 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AATCTTGAACCAATTGTCAA+CGG | + | chr6.4:53320948-53320967 | None:intergenic | 30.0% | |
| ACCCTAATAACACCTTTCTT+AGG | + | chr6.4:53320785-53320804 | None:intergenic | 35.0% | |
| ACTCTTCACATGCTGTATTA+AGG | + | chr6.4:53320835-53320854 | None:intergenic | 35.0% | |
| CCCTAATAACACCTTTCTTA+GGG | + | chr6.4:53320784-53320803 | None:intergenic | 35.0% | |
| CTCTTCACATGCTGTATTAA+GGG | + | chr6.4:53320834-53320853 | None:intergenic | 35.0% | |
| TGTCTTGATGTTAAGATCAG+TGG | + | chr6.4:53320810-53320829 | None:intergenic | 35.0% | |
| !! | ACCCTAAGAAAGGTGTTATT+AGG | - | chr6.4:53320780-53320799 | MS.gene069486:CDS | 35.0% |
| !! | CCCTAAGAAAGGTGTTATTA+GGG | - | chr6.4:53320781-53320800 | MS.gene069486:CDS | 35.0% |
| !!! | GATGATTTTGATTCCTCATC+TGG | - | chr6.4:53320872-53320891 | MS.gene069486:CDS | 35.0% |
| ACACAGAAGGCAAAAAGGTT+CGG | - | chr6.4:53320582-53320601 | MS.gene069486:CDS | 40.0% | |
| ACACCTTTCTTAGGGTTAAC+AGG | + | chr6.4:53320776-53320795 | None:intergenic | 40.0% | |
| ACCTTTCTTAGGGTTAACAG+GGG | + | chr6.4:53320774-53320793 | None:intergenic | 40.0% | |
| ACTCAATGTTGTAGTGGTTG+AGG | - | chr6.4:53320721-53320740 | MS.gene069486:CDS | 40.0% | |
| ATGTCCACTCAATGTTGTAG+TGG | - | chr6.4:53320715-53320734 | MS.gene069486:CDS | 40.0% | |
| CACCTTTCTTAGGGTTAACA+GGG | + | chr6.4:53320775-53320794 | None:intergenic | 40.0% | |
| CTCAATGTTGTAGTGGTTGA+GGG | - | chr6.4:53320722-53320741 | MS.gene069486:CDS | 40.0% | |
| CTGATGTGCCATACAAAGTT+AGG | - | chr6.4:53321089-53321108 | MS.gene069486:CDS | 40.0% | |
| GGTTGGAACCTAACTTTGTA+TGG | + | chr6.4:53321100-53321119 | None:intergenic | 40.0% | |
| TACGGTATGTGATTTCTGCA+AGG | - | chr6.4:53321006-53321025 | MS.gene069486:CDS | 40.0% | |
| TCAACCACTACAACATTGAG+TGG | + | chr6.4:53320722-53320741 | None:intergenic | 40.0% | |
| TGCAGAAATCACATACCGTA+GGG | + | chr6.4:53321006-53321025 | None:intergenic | 40.0% | |
| TTGATTCCTCATCTGGACAA+TGG | - | chr6.4:53320879-53320898 | MS.gene069486:CDS | 40.0% | |
| TTGCAGAAATCACATACCGT+AGG | + | chr6.4:53321007-53321026 | None:intergenic | 40.0% | |
| ! | GGGTCTTTAGGGATAGTAAT+GGG | - | chr6.4:53321047-53321066 | MS.gene069486:CDS | 40.0% |
| ! | TAAGCTTGTGTTTTGCCCTA+CGG | - | chr6.4:53320988-53321007 | MS.gene069486:CDS | 40.0% |
| AAACCACTACCGACAACACA+AGG | + | chr6.4:53320665-53320684 | None:intergenic | 45.0% | |
| AAGGTCATGTGCAGGAATGT+TGG | - | chr6.4:53321025-53321044 | MS.gene069486:CDS | 45.0% | |
| ACCCCTGTTAACCCTAAGAA+AGG | - | chr6.4:53320770-53320789 | MS.gene069486:CDS | 45.0% | |
| AGGTCATGTGCAGGAATGTT+GGG | - | chr6.4:53321026-53321045 | MS.gene069486:CDS | 45.0% | |
| ATCATCAAGCGTCCATATCG+TGG | + | chr6.4:53320858-53320877 | None:intergenic | 45.0% | |
| ATTTCTGCAAGGTCATGTGC+AGG | - | chr6.4:53321017-53321036 | MS.gene069486:CDS | 45.0% | |
| CACAGAAGGCAAAAAGGTTC+GGG | - | chr6.4:53320583-53320602 | MS.gene069486:CDS | 45.0% | |
| CAGGAATGTTGGGGTCTTTA+GGG | - | chr6.4:53321036-53321055 | MS.gene069486:CDS | 45.0% | |
| CATGTGAAGAGTCCACGATA+TGG | - | chr6.4:53320843-53320862 | MS.gene069486:CDS | 45.0% | |
| GACAAACCATTGTCCAGATG+AGG | + | chr6.4:53320888-53320907 | None:intergenic | 45.0% | |
| GGTTGACACAGAAGGCAAAA+AGG | - | chr6.4:53320577-53320596 | MS.gene069486:CDS | 45.0% | |
| TCGGATGTAGTAGTCTACTC+CGG | + | chr6.4:53320609-53320628 | None:intergenic | 45.0% | |
| TTGAGTGGACATGTCTCGTT+TGG | + | chr6.4:53320707-53320726 | None:intergenic | 45.0% | |
| ! | AATGGTTTGTCACTACCGGT+GGG | - | chr6.4:53320897-53320916 | MS.gene069486:CDS | 45.0% |
| ! | GGACAATGGTTTGTCACTAC+CGG | - | chr6.4:53320893-53320912 | MS.gene069486:CDS | 45.0% |
| ! | GGGGTCTTTAGGGATAGTAA+TGG | - | chr6.4:53321046-53321065 | MS.gene069486:CDS | 45.0% |
| ATTGTCAACGGTGTCCTTGC+CGG | + | chr6.4:53320936-53320955 | None:intergenic | 50.0% | |
| GAGCAAGTGGTTGACACAGA+AGG | - | chr6.4:53320569-53320588 | MS.gene069486:CDS | 50.0% | |
| GCAAGGACACCGTTGACAAT+TGG | - | chr6.4:53320936-53320955 | MS.gene069486:CDS | 50.0% | |
| GCAGGAATGTTGGGGTCTTT+AGG | - | chr6.4:53321035-53321054 | MS.gene069486:CDS | 50.0% | |
| GGTCATGTGCAGGAATGTTG+GGG | - | chr6.4:53321027-53321046 | MS.gene069486:CDS | 50.0% | |
| TCTGTGTCAACCACTTGCTC+AGG | + | chr6.4:53320569-53320588 | None:intergenic | 50.0% | |
| ! | ATGGTTTGTCACTACCGGTG+GGG | - | chr6.4:53320898-53320917 | MS.gene069486:CDS | 50.0% |
| ! | CAATGGTTTGTCACTACCGG+TGG | - | chr6.4:53320896-53320915 | MS.gene069486:CDS | 50.0% |
| ! | GTAGTGGTTGAGGGTTTTCG+TGG | - | chr6.4:53320731-53320750 | MS.gene069486:CDS | 50.0% |
| ! | GTTGAGGGTTTTCGTGGTCA+AGG | - | chr6.4:53320737-53320756 | MS.gene069486:CDS | 50.0% |
| ! | TAGTAATGGGAACCAGCGTG+TGG | - | chr6.4:53321060-53321079 | MS.gene069486:CDS | 50.0% |
| AGCTTCTCCGAGCAAGGGTT+GGG | + | chr6.4:53320537-53320556 | None:intergenic | 55.0% | |
| GAAGGCAAAAAGGTTCGGGC+CGG | - | chr6.4:53320587-53320606 | MS.gene069486:CDS | 55.0% | |
| GGGATTTCCAAGAACCCCAC+CGG | + | chr6.4:53320915-53320934 | None:intergenic | 55.0% | |
| GGTGGGGTTCTTGGAAATCC+CGG | - | chr6.4:53320914-53320933 | MS.gene069486:CDS | 55.0% | |
| GGTTCTTGGAAATCCCGGCA+AGG | - | chr6.4:53320919-53320938 | MS.gene069486:CDS | 55.0% | |
| TGACGCTTCACCTGAGCAAG+TGG | - | chr6.4:53320556-53320575 | MS.gene069486:CDS | 55.0% | |
| TTGTCAACGGTGTCCTTGCC+GGG | + | chr6.4:53320935-53320954 | None:intergenic | 55.0% | |
| TTGTCCACCCAACCCTTGCT+CGG | - | chr6.4:53320527-53320546 | MS.gene069486:CDS | 55.0% | |
| AAGGCCCACGACCGTCACAT+GGG | + | chr6.4:53320646-53320665 | None:intergenic | 60.0% | |
| ACAACCCCATGTGACGGTCG+TGG | - | chr6.4:53320638-53320657 | MS.gene069486:CDS | 60.0% | |
| AGCGTCAGCTTCTCCGAGCA+AGG | + | chr6.4:53320543-53320562 | None:intergenic | 60.0% | |
| CAACCCCATGTGACGGTCGT+GGG | - | chr6.4:53320639-53320658 | MS.gene069486:CDS | 60.0% | |
| CAGCTTCTCCGAGCAAGGGT+TGG | + | chr6.4:53320538-53320557 | None:intergenic | 60.0% | |
| CATCAGTGAGAGCCACACGC+TGG | + | chr6.4:53321075-53321094 | None:intergenic | 60.0% | |
| CGACCGTCACATGGGGTTGT+CGG | + | chr6.4:53320638-53320657 | None:intergenic | 60.0% | |
| GACCGTCACATGGGGTTGTC+GGG | + | chr6.4:53320637-53320656 | None:intergenic | 60.0% | |
| GAGCAAGGGTTGGGTGGACA+AGG | + | chr6.4:53320528-53320547 | None:intergenic | 60.0% | |
| GCGTCAGCTTCTCCGAGCAA+GGG | + | chr6.4:53320542-53320561 | None:intergenic | 60.0% | |
| GTCACTACCGGTGGGGTTCT+TGG | - | chr6.4:53320905-53320924 | MS.gene069486:CDS | 60.0% | |
| GTCCCGACAACCCCATGTGA+CGG | - | chr6.4:53320632-53320651 | MS.gene069486:CDS | 60.0% | |
| TCACATGGGGTTGTCGGGAC+TGG | + | chr6.4:53320632-53320651 | None:intergenic | 60.0% | |
| TTCTCCGAGCAAGGGTTGGG+TGG | + | chr6.4:53320534-53320553 | None:intergenic | 60.0% | |
| ! | ATGGGGTTGTCGGGACTGGT+CGG | + | chr6.4:53320628-53320647 | None:intergenic | 60.0% |
| ! | GGGCCTTGTGTTGTCGGTAG+TGG | - | chr6.4:53320659-53320678 | MS.gene069486:CDS | 60.0% |
| ! | GGTCGTGGGCCTTGTGTTGT+CGG | - | chr6.4:53320653-53320672 | MS.gene069486:CDS | 60.0% |
| AGGCCCACGACCGTCACATG+GGG | + | chr6.4:53320645-53320664 | None:intergenic | 65.0% | |
| CAAGGCCCACGACCGTCACA+TGG | + | chr6.4:53320647-53320666 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 53320488 | 53321129 | 53320488 | ID=MS.gene069486 |
| chr6.4 | mRNA | 53320488 | 53321129 | 53320488 | ID=MS.gene069486.t1;Parent=MS.gene069486 |
| chr6.4 | exon | 53320488 | 53321129 | 53320488 | ID=MS.gene069486.t1.exon1;Parent=MS.gene069486.t1 |
| chr6.4 | CDS | 53320488 | 53321129 | 53320488 | ID=cds.MS.gene069486.t1;Parent=MS.gene069486.t1 |
| Gene Sequence |
| Protein sequence |
