Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071773.t1 | XP_013452216.1 | 89.5 | 427 | 39 | 3 | 9 | 435 | 1 | 421 | 5.00E-226 | 793.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071773.t1 | A0A072U8X8 | 89.5 | 427 | 39 | 3 | 9 | 435 | 1 | 421 | 3.6e-226 | 793.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene071773 | 0.81678 | 4.64E-52 | -1.69E-46 |
| MS.gene049488 | MS.gene071773 | 0.808509 | 2.99E-50 | -1.69E-46 |
| MS.gene049661 | MS.gene071773 | 0.801289 | 9.66E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene071773 | 0.822644 | 2.12E-53 | -1.69E-46 |
| MS.gene050128 | MS.gene071773 | 0.801178 | 1.02E-48 | -1.69E-46 |
| MS.gene050301 | MS.gene071773 | 0.816174 | 6.34E-52 | -1.69E-46 |
| MS.gene050397 | MS.gene071773 | 0.809714 | 1.65E-50 | -1.69E-46 |
| MS.gene050971 | MS.gene071773 | 0.823981 | 1.03E-53 | -1.69E-46 |
| MS.gene051860 | MS.gene071773 | 0.820135 | 8.05E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene071773 | 0.825774 | 3.90E-54 | -1.69E-46 |
| MS.gene052188 | MS.gene071773 | 0.836351 | 9.85E-57 | -1.69E-46 |
| MS.gene052253 | MS.gene071773 | 0.822295 | 2.56E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene071773 | 0.836003 | 1.21E-56 | -1.69E-46 |
| MS.gene05316 | MS.gene071773 | 0.83449 | 2.91E-56 | -1.69E-46 |
| MS.gene053557 | MS.gene071773 | 0.800938 | 1.14E-48 | -1.69E-46 |
| MS.gene053758 | MS.gene071773 | 0.816562 | 5.19E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene071773 | 0.835789 | 1.37E-56 | -1.69E-46 |
| MS.gene053912 | MS.gene071773 | 0.810905 | 9.14E-51 | -1.69E-46 |
| MS.gene054011 | MS.gene071773 | 0.802289 | 6.02E-49 | -1.69E-46 |
| MS.gene054473 | MS.gene071773 | 0.800902 | 1.16E-48 | -1.69E-46 |
| MS.gene055116 | MS.gene071773 | 0.816479 | 5.41E-52 | -1.69E-46 |
| MS.gene055277 | MS.gene071773 | 0.838177 | 3.36E-57 | -1.69E-46 |
| MS.gene055422 | MS.gene071773 | 0.833454 | 5.28E-56 | -1.69E-46 |
| MS.gene055604 | MS.gene071773 | 0.805456 | 1.32E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene071773 | 0.805306 | 1.42E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene071773 | 0.807362 | 5.25E-50 | -1.69E-46 |
| MS.gene056609 | MS.gene071773 | 0.810669 | 1.03E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene071773 | 0.813732 | 2.21E-51 | -1.69E-46 |
| MS.gene056899 | MS.gene071773 | -0.801157 | 1.03E-48 | -1.69E-46 |
| MS.gene05702 | MS.gene071773 | 0.848992 | 4.30E-60 | -1.69E-46 |
| MS.gene057448 | MS.gene071773 | 0.812918 | 3.33E-51 | -1.69E-46 |
| MS.gene057449 | MS.gene071773 | 0.824094 | 9.72E-54 | -1.69E-46 |
| MS.gene057450 | MS.gene071773 | 0.819845 | 9.38E-53 | -1.69E-46 |
| MS.gene057749 | MS.gene071773 | 0.809906 | 1.50E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene071773 | 0.801279 | 9.71E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene071773 | 0.804699 | 1.91E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene071773 | 0.802342 | 5.87E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene071773 | 0.847401 | 1.18E-59 | -1.69E-46 |
| MS.gene058928 | MS.gene071773 | 0.840531 | 8.22E-58 | -1.69E-46 |
| MS.gene05907 | MS.gene071773 | 0.821169 | 4.66E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene071773 | 0.837316 | 5.58E-57 | -1.69E-46 |
| MS.gene059294 | MS.gene071773 | 0.803697 | 3.08E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene071773 | 0.814607 | 1.41E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene071773 | 0.825802 | 3.84E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene071773 | 0.803819 | 2.91E-49 | -1.69E-46 |
| MS.gene059692 | MS.gene071773 | 0.804445 | 2.15E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene071773 | 0.810454 | 1.14E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene071773 | 0.809729 | 1.64E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene071773 | 0.829489 | 5.00E-55 | -1.69E-46 |
| MS.gene06037 | MS.gene071773 | 0.821146 | 4.71E-53 | -1.69E-46 |
| MS.gene060495 | MS.gene071773 | 0.819817 | 9.52E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene071773 | 0.855659 | 5.44E-62 | -1.69E-46 |
| MS.gene061051 | MS.gene071773 | -0.808394 | 3.17E-50 | -1.69E-46 |
| MS.gene061159 | MS.gene071773 | 0.829286 | 5.60E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071773.t1 | MTR_6g048350 | 87.731 | 432 | 52 | 1 | 8 | 439 | 1 | 431 | 0.0 | 792 |
| MS.gene071773.t1 | MTR_6g048310 | 89.461 | 427 | 39 | 3 | 9 | 435 | 1 | 421 | 0.0 | 764 |
| MS.gene071773.t1 | MTR_4g094548 | 83.333 | 438 | 70 | 3 | 8 | 443 | 1 | 437 | 0.0 | 762 |
| MS.gene071773.t1 | MTR_4g094555 | 80.505 | 436 | 84 | 1 | 8 | 443 | 1 | 435 | 0.0 | 739 |
| MS.gene071773.t1 | MTR_4g094570 | 79.535 | 430 | 87 | 1 | 8 | 437 | 1 | 429 | 0.0 | 730 |
| MS.gene071773.t1 | MTR_4g094560 | 79.587 | 436 | 78 | 2 | 8 | 443 | 1 | 425 | 0.0 | 717 |
| MS.gene071773.t1 | MTR_4g094550 | 79.302 | 430 | 87 | 2 | 8 | 436 | 1 | 429 | 0.0 | 717 |
| MS.gene071773.t1 | MTR_4g094562 | 78.738 | 428 | 82 | 1 | 8 | 435 | 1 | 419 | 0.0 | 710 |
| MS.gene071773.t1 | MTR_2g030470 | 62.162 | 444 | 154 | 6 | 6 | 443 | 2 | 437 | 0.0 | 570 |
| MS.gene071773.t1 | MTR_2g030470 | 61.337 | 419 | 151 | 4 | 4 | 419 | 412 | 822 | 0.0 | 550 |
| MS.gene071773.t1 | MTR_1g052640 | 61.575 | 419 | 149 | 4 | 8 | 422 | 1 | 411 | 0.0 | 555 |
| MS.gene071773.t1 | MTR_2g030460 | 60.000 | 420 | 156 | 4 | 8 | 423 | 1 | 412 | 0.0 | 550 |
| MS.gene071773.t1 | MTR_0083s0100 | 64.010 | 389 | 131 | 2 | 35 | 422 | 31 | 411 | 0.0 | 540 |
| MS.gene071773.t1 | MTR_2g030480 | 59.135 | 416 | 139 | 5 | 8 | 420 | 1 | 388 | 9.26e-180 | 507 |
| MS.gene071773.t1 | MTR_4g094565 | 59.674 | 429 | 91 | 5 | 8 | 436 | 1 | 347 | 2.26e-169 | 479 |
| MS.gene071773.t1 | MTR_4g094562 | 75.874 | 286 | 69 | 0 | 8 | 293 | 1 | 286 | 5.00e-167 | 473 |
| MS.gene071773.t1 | MTR_2g030460 | 58.187 | 342 | 131 | 4 | 8 | 345 | 1 | 334 | 2.80e-154 | 441 |
| MS.gene071773.t1 | MTR_1g052640 | 59.357 | 342 | 127 | 4 | 8 | 345 | 1 | 334 | 9.66e-152 | 434 |
| MS.gene071773.t1 | MTR_4g094565 | 70.629 | 286 | 56 | 1 | 8 | 293 | 1 | 258 | 5.46e-145 | 416 |
| MS.gene071773.t1 | MTR_8g039300 | 45.107 | 419 | 210 | 6 | 8 | 419 | 1 | 406 | 2.26e-136 | 398 |
| MS.gene071773.t1 | MTR_6g090090 | 45.498 | 422 | 200 | 7 | 6 | 420 | 25 | 423 | 1.79e-135 | 396 |
| MS.gene071773.t1 | MTR_6g089930 | 43.468 | 421 | 218 | 6 | 8 | 421 | 1 | 408 | 2.23e-134 | 393 |
| MS.gene071773.t1 | MTR_3g035040 | 43.943 | 421 | 216 | 7 | 8 | 421 | 1 | 408 | 2.42e-129 | 380 |
| MS.gene071773.t1 | MTR_1g052640 | 58.763 | 291 | 108 | 4 | 8 | 294 | 1 | 283 | 1.19e-125 | 366 |
| MS.gene071773.t1 | MTR_1g035220 | 43.112 | 392 | 181 | 7 | 8 | 391 | 1 | 358 | 1.27e-114 | 340 |
| MS.gene071773.t1 | MTR_1g062750 | 45.188 | 239 | 116 | 5 | 65 | 294 | 2 | 234 | 2.98e-74 | 233 |
| MS.gene071773.t1 | MTR_3g010150 | 58.537 | 41 | 17 | 0 | 132 | 172 | 14 | 54 | 8.15e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071773.t1 | AT5G61820 | 56.770 | 421 | 159 | 7 | 13 | 419 | 8 | 419 | 2.58e-169 | 484 |
| MS.gene071773.t1 | AT5G61820 | 56.770 | 421 | 159 | 7 | 13 | 419 | 8 | 419 | 2.58e-169 | 484 |
Find 0 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGAATAAATATTCAATT+TGG | - | 42983:6313-6332 | MS.gene071773:intron | 10.0% |
| !! | GAATAAATAAATATTCAATT+TGG | - | 42983:6242-6261 | MS.gene071773:intron | 10.0% |
| !! | GATATAATCAATATTTAATT+TGG | - | 42983:6132-6151 | MS.gene071773:CDS | 10.0% |
| !!! | TAATATACTTTTAGATAATT+AGG | - | 42983:9226-9245 | MS.gene071773:intron | 10.0% |
| !!! | TTAAATATTGATTATATCTA+TGG | + | 42983:6130-6149 | None:intergenic | 10.0% |
| !!! | TGTTTTAATTAACAAGAAAA+TGG | - | 42983:8582-8601 | MS.gene071773:intron | 15.0% |
| !! | AAACTATCAAATGATTCAAA+AGG | - | 42983:7713-7732 | MS.gene071773:CDS | 20.0% |
| !! | AATTTATTTATAACTGATCC+AGG | + | 42983:7050-7069 | None:intergenic | 20.0% |
| !! | AATTTGCAATAGTTACATAT+AGG | - | 42983:8298-8317 | MS.gene071773:intron | 20.0% |
| !! | ACAAGTATGAATTGTAAAAA+TGG | + | 42983:6016-6035 | None:intergenic | 20.0% |
| !! | ATTAAAACATTTATTACCCT+CGG | + | 42983:8571-8590 | None:intergenic | 20.0% |
| !!! | AAATAAAATCAGCAGTTTTT+TGG | - | 42983:7003-7022 | MS.gene071773:CDS | 20.0% |
| !!! | TATGATATTGATTTTCCAAA+AGG | - | 42983:7074-7093 | MS.gene071773:intron | 20.0% |
| !!! | TTGTCTATTATTTTTTGTCA+CGG | - | 42983:6501-6520 | MS.gene071773:intron | 20.0% |
| !!! | TTTGTTTAAAACTGTAATCA+TGG | - | 42983:8345-8364 | MS.gene071773:intron | 20.0% |
| ! | AACTGAGTATAATGATCAAA+AGG | + | 42983:6768-6787 | None:intergenic | 25.0% |
| ! | AATGTAACAGTGGATAAATA+CGG | - | 42983:7503-7522 | MS.gene071773:CDS | 25.0% |
| ! | ACTTTGACTCATTATAACAT+AGG | - | 42983:6438-6457 | MS.gene071773:intron | 25.0% |
| ! | ATTCAACTGTGTAAATTTAG+TGG | - | 42983:6554-6573 | MS.gene071773:intron | 25.0% |
| ! | CATTAGACCAATAGTAAATA+AGG | - | 42983:8755-8774 | MS.gene071773:intron | 25.0% |
| ! | CTTTGACTCATTATAACATA+GGG | - | 42983:6439-6458 | MS.gene071773:intron | 25.0% |
| ! | TAAATCCAAAATATCGAGTT+TGG | - | 42983:7904-7923 | MS.gene071773:CDS | 25.0% |
| ! | TTAAAACTGTAATCATGGAA+GGG | - | 42983:8350-8369 | MS.gene071773:intron | 25.0% |
| !! | AAAATCATGATTTTGTGCTA+GGG | - | 42983:8490-8509 | MS.gene071773:intron | 25.0% |
| !! | GATTGATTGGAATGATTTTA+TGG | - | 42983:7649-7668 | MS.gene071773:CDS | 25.0% |
| !! | TAGTCCTTAACATTTTCATA+CGG | - | 42983:6392-6411 | MS.gene071773:intron | 25.0% |
| !! | TGTGAATTATGTATGTTTTC+AGG | - | 42983:8929-8948 | MS.gene071773:intron | 25.0% |
| !! | TTAATCCAAACTCGATATTT+TGG | + | 42983:7912-7931 | None:intergenic | 25.0% |
| !! | TTTAAAACTGTAATCATGGA+AGG | - | 42983:8349-8368 | MS.gene071773:intron | 25.0% |
| !!! | AAACTAGCCTTATTTACTAT+TGG | + | 42983:8765-8784 | None:intergenic | 25.0% |
| !!! | AATTATGTATGTTTTCAGGA+TGG | - | 42983:8933-8952 | MS.gene071773:intron | 25.0% |
| !!! | ATTATGTATGTTTTCAGGAT+GGG | - | 42983:8934-8953 | MS.gene071773:intron | 25.0% |
| !!! | TTTAAAATGAGTGTCGTTTA+AGG | + | 42983:8844-8863 | None:intergenic | 25.0% |
| !!! | TTTTTTGTCACGGATTAAAT+TGG | - | 42983:6511-6530 | MS.gene071773:intron | 25.0% |
| AACAAACCTCCTTTATAATC+TGG | + | 42983:7542-7561 | None:intergenic | 30.0% | |
| ACCTAAAATACACCATGAAA+TGG | - | 42983:7627-7646 | MS.gene071773:CDS | 30.0% | |
| ACGAAACATATATCCATCAT+TGG | - | 42983:7162-7181 | MS.gene071773:intron | 30.0% | |
| ACTCTAATTATGTTCTCGTA+AGG | - | 42983:7255-7274 | MS.gene071773:intron | 30.0% | |
| AGTGATTGTTGGATCAAAAT+CGG | - | 42983:7847-7866 | MS.gene071773:CDS | 30.0% | |
| ATACAGAAAATGATAGCCAT+AGG | - | 42983:7222-7241 | MS.gene071773:intron | 30.0% | |
| ATCATTTGAACTTGATCCAA+CGG | - | 42983:7995-8014 | MS.gene071773:CDS | 30.0% | |
| ATGGTACAACAGAATGAAAA+AGG | + | 42983:6658-6677 | None:intergenic | 30.0% | |
| ATTCCAATCAATCCATTTCA+TGG | + | 42983:7642-7661 | None:intergenic | 30.0% | |
| CGAAACATATATCCATCATT+GGG | - | 42983:7163-7182 | MS.gene071773:intron | 30.0% | |
| GAACTTAGATCATGATTGTA+AGG | - | 42983:7739-7758 | MS.gene071773:CDS | 30.0% | |
| GATATTCTTCCACAGTATTT+CGG | - | 42983:7299-7318 | MS.gene071773:intron | 30.0% | |
| TAAATCCAAAATACCGAGTT+TGG | + | 42983:7970-7989 | None:intergenic | 30.0% | |
| TAGAAGCTAATATCTTGAGT+CGG | + | 42983:8438-8457 | None:intergenic | 30.0% | |
| TAGAATGTCTCAATTGTTGT+TGG | + | 42983:9178-9197 | None:intergenic | 30.0% | |
| TATGACGCAAAATCTTAATC+TGG | - | 42983:6040-6059 | MS.gene071773:CDS | 30.0% | |
| TCAATTATGTATGCCTTAAC+AGG | + | 42983:7677-7696 | None:intergenic | 30.0% | |
| TCATTTCCATTTCCATAACT+TGG | + | 42983:8981-9000 | None:intergenic | 30.0% | |
| TTACCTATCTCTATACCAAA+AGG | + | 42983:7368-7387 | None:intergenic | 30.0% | |
| TTCATCAAGAATCATGTTGT+TGG | - | 42983:7770-7789 | MS.gene071773:CDS | 30.0% | |
| TTCTCAAAAGAACTTGAGAA+TGG | + | 42983:6972-6991 | None:intergenic | 30.0% | |
| ! | AAATACCGAGTTTGGAATTT+AGG | + | 42983:7962-7981 | None:intergenic | 30.0% |
| ! | AAATTCCAAACTCGGTATTT+TGG | - | 42983:7962-7981 | MS.gene071773:CDS | 30.0% |
| ! | AATTAATTGGAGGGTACAAT+TGG | + | 42983:8711-8730 | None:intergenic | 30.0% |
| ! | AGTGAAAGTACAAAATCTCT+AGG | + | 42983:6921-6940 | None:intergenic | 30.0% |
| ! | CAAAATCATGATTTTGTGCT+AGG | - | 42983:8489-8508 | MS.gene071773:intron | 30.0% |
| ! | CTAGCACAAAATCATGATTT+TGG | + | 42983:8491-8510 | None:intergenic | 30.0% |
| ! | GAATACTCACAATTTGTTTG+CGG | + | 42983:6538-6557 | None:intergenic | 30.0% |
| ! | TCCATTTCATGGTGTATTTT+AGG | + | 42983:7631-7650 | None:intergenic | 30.0% |
| ! | TGAGCTTTATAATGTAACAG+TGG | - | 42983:7493-7512 | MS.gene071773:CDS | 30.0% |
| !! | ATCATGATTTTGGTCTGAAT+TGG | + | 42983:8481-8500 | None:intergenic | 30.0% |
| !! | CTAATGCTTTGAAGAAAGTA+GGG | + | 42983:8741-8760 | None:intergenic | 30.0% |
| !! | CTCGGTATTTTGGATTTAAA+AGG | - | 42983:7972-7991 | MS.gene071773:CDS | 30.0% |
| !! | TCATGATTTTGGTCTGAATT+GGG | + | 42983:8480-8499 | None:intergenic | 30.0% |
| !! | TCTAATGCTTTGAAGAAAGT+AGG | + | 42983:8742-8761 | None:intergenic | 30.0% |
| !!! | TACTCGTTCTTCGTTTTTTA+TGG | - | 42983:9196-9215 | MS.gene071773:intron | 30.0% |
| !!! | TTTTGTTTTTTTTCAGCCGA+GGG | - | 42983:8552-8571 | MS.gene071773:intron | 30.0% |
| AATTTGGATCCTTGCATTAG+TGG | - | 42983:6148-6167 | MS.gene071773:CDS | 35.0% | |
| ACACCAGTTCATTTCTTTGT+TGG | - | 42983:8078-8097 | MS.gene071773:CDS | 35.0% | |
| ACGATCCTAAATTCCAAACT+CGG | - | 42983:7954-7973 | MS.gene071773:CDS | 35.0% | |
| AGAAGCTAATATCTTGAGTC+GGG | + | 42983:8437-8456 | None:intergenic | 35.0% | |
| ATAAATACGGAAGGCCTTTA+AGG | - | 42983:7516-7535 | MS.gene071773:CDS | 35.0% | |
| ATCAAGAATCATGTTGTTGG+TGG | - | 42983:7773-7792 | MS.gene071773:CDS | 35.0% | |
| ATCTCTATACCAAAAGGATC+CGG | + | 42983:7362-7381 | None:intergenic | 35.0% | |
| ATGATTGTGTTCATGTGAAG+AGG | - | 42983:8183-8202 | MS.gene071773:CDS | 35.0% | |
| ATTTGGATCCTTGCATTAGT+GGG | - | 42983:6149-6168 | MS.gene071773:CDS | 35.0% | |
| CACCAGTTCATTTCTTTGTT+GGG | - | 42983:8079-8098 | MS.gene071773:CDS | 35.0% | |
| CCTCTGAATGAAAATGTTAG+AGG | - | 42983:6472-6491 | MS.gene071773:intron | 35.0% | |
| CTCGGCTGAAAAAAAACAAA+AGG | + | 42983:8553-8572 | None:intergenic | 35.0% | |
| GCAAGATCAAAGTTTGCAAA+TGG | + | 42983:6677-6696 | None:intergenic | 35.0% | |
| GGAATTGGATCAACTCTATA+TGG | - | 42983:8269-8288 | MS.gene071773:CDS | 35.0% | |
| GGTACACTCAATTAATTGGA+GGG | + | 42983:8720-8739 | None:intergenic | 35.0% | |
| GGTCATTCTCAATTTACTTG+CGG | - | 42983:6334-6353 | MS.gene071773:intron | 35.0% | |
| GGTTCTGTCAAGATAAATGA+TGG | - | 42983:9056-9075 | MS.gene071773:intron | 35.0% | |
| GTAGGGTACACTCAATTAAT+TGG | + | 42983:8724-8743 | None:intergenic | 35.0% | |
| TAACAGTGGATAAATACGGA+AGG | - | 42983:7507-7526 | MS.gene071773:CDS | 35.0% | |
| TACCCAACAAAGAAATGAAC+TGG | + | 42983:8084-8103 | None:intergenic | 35.0% | |
| TATGGAAATGGAAATGAAGC+AGG | - | 42983:8984-9003 | MS.gene071773:intron | 35.0% | |
| TCATTTATCTTGACAGAACC+TGG | + | 42983:9056-9075 | None:intergenic | 35.0% | |
| TCTGTACCAAGTTATGGAAA+TGG | - | 42983:8972-8991 | MS.gene071773:intron | 35.0% | |
| TGCAAGCATATGATCAAGAA+TGG | + | 42983:6098-6117 | None:intergenic | 35.0% | |
| TGCTCCGTATGAAAATGTTA+AGG | + | 42983:6399-6418 | None:intergenic | 35.0% | |
| TGGATATATGTTTCGTGCAA+CGG | + | 42983:7158-7177 | None:intergenic | 35.0% | |
| TGTTCTTCTGTACCAAGTTA+TGG | - | 42983:8966-8985 | MS.gene071773:intron | 35.0% | |
| TTAAGGCCAGATTATAAAGG+AGG | - | 42983:7533-7552 | MS.gene071773:CDS | 35.0% | |
| TTTAGGTAGAGACTTCTCTT+TGG | + | 42983:7614-7633 | None:intergenic | 35.0% | |
| ! | AATCATGTTGTTGGTGGAAA+TGG | - | 42983:7779-7798 | MS.gene071773:CDS | 35.0% |
| ! | AATGGGACTTTTCTACCTAT+TGG | - | 42983:9133-9152 | MS.gene071773:intron | 35.0% |
| ! | ACGACACTCATTTTAAACAG+AGG | - | 42983:8847-8866 | MS.gene071773:intron | 35.0% |
| ! | CCTCTAACATTTTCATTCAG+AGG | + | 42983:6475-6494 | None:intergenic | 35.0% |
| ! | CGACACTCATTTTAAACAGA+GGG | - | 42983:8848-8867 | MS.gene071773:intron | 35.0% |
| ! | GAGAGTTTTACCAATCATTG+TGG | - | 42983:8406-8425 | MS.gene071773:intron | 35.0% |
| ! | GATCCTTTTGGTATAGAGAT+AGG | - | 42983:7362-7381 | MS.gene071773:intron | 35.0% |
| ! | GTCTCAATTGTTGTTGGTAT+GGG | + | 42983:9172-9191 | None:intergenic | 35.0% |
| ! | TGATACACAATGCAAGTTGA+AGG | - | 42983:7574-7593 | MS.gene071773:CDS | 35.0% |
| ! | TGATTTTATGGTGCCTGTTA+AGG | - | 42983:7661-7680 | MS.gene071773:CDS | 35.0% |
| ! | TGTCTCAATTGTTGTTGGTA+TGG | + | 42983:9173-9192 | None:intergenic | 35.0% |
| ! | TTGATTGCTACATGACCTTT+TGG | + | 42983:7092-7111 | None:intergenic | 35.0% |
| !! | AAGTTGAAGGAAGGTTTTGA+GGG | - | 42983:7587-7606 | MS.gene071773:CDS | 35.0% |
| !! | ACACCATGAAATGGATTGAT+TGG | - | 42983:7636-7655 | MS.gene071773:CDS | 35.0% |
| !! | CCTTTAAGGCCAGATTATAA+AGG | - | 42983:7530-7549 | MS.gene071773:CDS | 35.0% |
| !! | CCTTTATAATCTGGCCTTAA+AGG | + | 42983:7533-7552 | None:intergenic | 35.0% |
| !! | TCTACTTGTTATCCTAAACC+AGG | - | 42983:9035-9054 | MS.gene071773:intron | 35.0% |
| !!! | CTTTTGTTTTTTTTCAGCCG+AGG | - | 42983:8551-8570 | MS.gene071773:intron | 35.0% |
| !!! | TAGAGTTTTGAAGCATCCTA+TGG | + | 42983:7241-7260 | None:intergenic | 35.0% |
| AATCCTGCAGAAATTCCAGA+AGG | - | 42983:7386-7405 | MS.gene071773:intron | 40.0% | |
| ACATAACCACCAGTTTGTAG+TGG | + | 42983:8218-8237 | None:intergenic | 40.0% | |
| ACCAAAAGGATCCGGAATAT+CGG | + | 42983:7354-7373 | None:intergenic | 40.0% | |
| AGAAATTCCAGAAGGGTTTG+AGG | - | 42983:7394-7413 | MS.gene071773:intron | 40.0% | |
| AGTTTGGATTAAGTGACCGT+TGG | - | 42983:7920-7939 | MS.gene071773:CDS | 40.0% | |
| ATCCTGCAGAAATTCCAGAA+GGG | - | 42983:7387-7406 | MS.gene071773:intron | 40.0% | |
| ATCGACATATCAATGACCGT+TGG | + | 42983:8014-8033 | None:intergenic | 40.0% | |
| ATCGTCTGAACTTGATCCAA+CGG | + | 42983:7939-7958 | None:intergenic | 40.0% | |
| ATCTTGACAGAACCTGGTTT+AGG | + | 42983:9050-9069 | None:intergenic | 40.0% | |
| ATCTTGCAACAACCCAATGA+TGG | + | 42983:7178-7197 | None:intergenic | 40.0% | |
| CACAATCATTTCCCTCATCA+TGG | + | 42983:8172-8191 | None:intergenic | 40.0% | |
| CATAACCACCAGTTTGTAGT+GGG | + | 42983:8217-8236 | None:intergenic | 40.0% | |
| CATCAACATTCAGGTGGAAT+TGG | - | 42983:8254-8273 | MS.gene071773:CDS | 40.0% | |
| GGGTACACTCAATTAATTGG+AGG | + | 42983:8721-8740 | None:intergenic | 40.0% | |
| GTGAATGGATCAGTGATTGT+TGG | - | 42983:7836-7855 | MS.gene071773:CDS | 40.0% | |
| TATGTTCTCGTAAGGAACGA+TGG | - | 42983:7263-7282 | MS.gene071773:intron | 40.0% | |
| TGGAAATGAAGCAGGAAATG+AGG | - | 42983:8992-9011 | MS.gene071773:intron | 40.0% | |
| TGGATCAACTCTATATGGAC+AGG | - | 42983:8274-8293 | MS.gene071773:CDS | 40.0% | |
| TTTGTGCTAGGGTTCAAACT+TGG | - | 42983:8501-8520 | MS.gene071773:intron | 40.0% | |
| ! | ACACAATGCAAGTTGAAGGA+AGG | - | 42983:7578-7597 | MS.gene071773:CDS | 40.0% |
| ! | AGGTCCTTGCTCAAATTTTG+GGG | + | 42983:7030-7049 | None:intergenic | 40.0% |
| ! | CAGGTCCTTGCTCAAATTTT+GGG | + | 42983:7031-7050 | None:intergenic | 40.0% |
| ! | GAAATGGATTCCGTGTAGTT+GGG | - | 42983:7795-7814 | MS.gene071773:CDS | 40.0% |
| !! | CAAGTTGAAGGAAGGTTTTG+AGG | - | 42983:7586-7605 | MS.gene071773:CDS | 40.0% |
| AAAGGATCCGGAATATCGGT+CGG | + | 42983:7350-7369 | None:intergenic | 45.0% | |
| AACTCACACCCACTAATGCA+AGG | + | 42983:6160-6179 | None:intergenic | 45.0% | |
| AATGAAGCAGGAAATGAGGC+AGG | - | 42983:8996-9015 | MS.gene071773:intron | 45.0% | |
| AATGAGGCAGGGTACATTGT+AGG | - | 42983:9008-9027 | MS.gene071773:intron | 45.0% | |
| ACAAGTCTCCCACTACAAAC+TGG | - | 42983:8206-8225 | MS.gene071773:CDS | 45.0% | |
| ACTGTGGAAGAATATCTGCC+TGG | + | 42983:7295-7314 | None:intergenic | 45.0% | |
| AGCTAATATCTTGAGTCGGG+TGG | + | 42983:8434-8453 | None:intergenic | 45.0% | |
| ATGAAGCAGGAAATGAGGCA+GGG | - | 42983:8997-9016 | MS.gene071773:intron | 45.0% | |
| ATTCATGCTATCGATACGCG+TGG | - | 42983:7434-7453 | MS.gene071773:CDS | 45.0% | |
| CCAAAATTTGAGCAAGGACC+TGG | - | 42983:7029-7048 | MS.gene071773:CDS | 45.0% | |
| GCTGTTGCTCATCAACATTC+AGG | - | 42983:8245-8264 | MS.gene071773:CDS | 45.0% | |
| GTGGCGTAGAGGATAAGTTA+GGG | - | 42983:7453-7472 | MS.gene071773:CDS | 45.0% | |
| GTTGCTCATCAACATTCAGG+TGG | - | 42983:8248-8267 | MS.gene071773:CDS | 45.0% | |
| TGGTCCCCAAAATTTGAGCA+AGG | - | 42983:7023-7042 | MS.gene071773:CDS | 45.0% | |
| TGTAGCACAGACCATGATGA+GGG | - | 42983:8158-8177 | MS.gene071773:CDS | 45.0% | |
| TTCCTCGTGTTTCAGATCCA+AGG | + | 42983:7325-7344 | None:intergenic | 45.0% | |
| TTGTAGCACAGACCATGATG+AGG | - | 42983:8157-8176 | MS.gene071773:CDS | 45.0% | |
| ! | AAAGAGCACGCTGGAGTAAT+GGG | - | 42983:9116-9135 | MS.gene071773:intron | 45.0% |
| ! | ACCGATATTCCGGATCCTTT+TGG | - | 42983:7350-7369 | MS.gene071773:intron | 45.0% |
| ! | CCAGGTCCTTGCTCAAATTT+TGG | + | 42983:7032-7051 | None:intergenic | 45.0% |
| ! | GCTGAAGTTGTTGATGAAGC+TGG | - | 42983:7122-7141 | MS.gene071773:intron | 45.0% |
| ! | GGAAATGGATTCCGTGTAGT+TGG | - | 42983:7794-7813 | MS.gene071773:CDS | 45.0% |
| ! | GGGACTTTTCTACCTATTGG+TGG | - | 42983:9136-9155 | MS.gene071773:intron | 45.0% |
| !! | AACCCTTCTGGAATTTCTGC+AGG | + | 42983:7392-7411 | None:intergenic | 45.0% |
| AAGGAACGATGGCATATGCC+AGG | - | 42983:7274-7293 | MS.gene071773:intron | 50.0% | |
| AGGAACACCGACCGATATTC+CGG | - | 42983:7340-7359 | MS.gene071773:intron | 50.0% | |
| AGTCTCCCACTACAAACTGG+TGG | - | 42983:8209-8228 | MS.gene071773:CDS | 50.0% | |
| CACTTCTCCTCAAACCCTTC+TGG | + | 42983:7404-7423 | None:intergenic | 50.0% | |
| CAGAAGGGTTTGAGGAGAAG+TGG | - | 42983:7402-7421 | MS.gene071773:intron | 50.0% | |
| CATTACTCCAGCGTGCTCTT+TGG | + | 42983:9117-9136 | None:intergenic | 50.0% | |
| CCATTCACTGCGTGAATGCA+GGG | + | 42983:7824-7843 | None:intergenic | 50.0% | |
| CGTGGCGTAGAGGATAAGTT+AGG | - | 42983:7452-7471 | MS.gene071773:CDS | 50.0% | |
| CTTCCACAGTATTTCGGCCT+TGG | - | 42983:7305-7324 | MS.gene071773:intron | 50.0% | |
| GATCCAAGGCCGAAATACTG+TGG | + | 42983:7311-7330 | None:intergenic | 50.0% | |
| GGAGTTGTTCTGCCACCAAT+AGG | + | 42983:9151-9170 | None:intergenic | 50.0% | |
| TCCATTCACTGCGTGAATGC+AGG | + | 42983:7825-7844 | None:intergenic | 50.0% | |
| TCGGGTGGAACCACAATGAT+TGG | + | 42983:8419-8438 | None:intergenic | 50.0% | |
| ! | AACAACACCAAAGAGCACGC+TGG | - | 42983:9107-9126 | MS.gene071773:intron | 50.0% |
| ! | CAAAGAGCACGCTGGAGTAA+TGG | - | 42983:9115-9134 | MS.gene071773:intron | 50.0% |
| CCCTGCATTCACGCAGTGAA+TGG | - | 42983:7821-7840 | MS.gene071773:CDS | 55.0% | |
| GCTTCTACAGTTGCGCGTAG+AGG | - | 42983:8451-8470 | MS.gene071773:intron | 55.0% | |
| TATCGATACGCGTGGCGTAG+AGG | - | 42983:7442-7461 | MS.gene071773:CDS | 55.0% | |
| TGCAGGGTCTCCCAACTACA+CGG | + | 42983:7808-7827 | None:intergenic | 55.0% | |
| ! | GGCCTTGGATCTGAAACACG+AGG | - | 42983:7320-7339 | MS.gene071773:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 42983 | gene | 5947 | 9247 | 5947 | ID=MS.gene071773 |
| 42983 | mRNA | 5947 | 9247 | 5947 | ID=MS.gene071773.t1;Parent=MS.gene071773 |
| 42983 | exon | 9233 | 9247 | 9233 | ID=MS.gene071773.t1.exon1;Parent=MS.gene071773.t1 |
| 42983 | CDS | 9233 | 9247 | 9233 | ID=cds.MS.gene071773.t1;Parent=MS.gene071773.t1 |
| 42983 | exon | 7434 | 8294 | 7434 | ID=MS.gene071773.t1.exon2;Parent=MS.gene071773.t1 |
| 42983 | CDS | 7434 | 8294 | 7434 | ID=cds.MS.gene071773.t1;Parent=MS.gene071773.t1 |
| 42983 | exon | 6899 | 7057 | 6899 | ID=MS.gene071773.t1.exon3;Parent=MS.gene071773.t1 |
| 42983 | CDS | 6899 | 7057 | 6899 | ID=cds.MS.gene071773.t1;Parent=MS.gene071773.t1 |
| 42983 | exon | 5947 | 6243 | 5947 | ID=MS.gene071773.t1.exon4;Parent=MS.gene071773.t1 |
| 42983 | CDS | 5947 | 6243 | 5947 | ID=cds.MS.gene071773.t1;Parent=MS.gene071773.t1 |
| Gene Sequence |
| Protein sequence |
