Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074383.t1 | XP_013461036.1 | 98.1 | 415 | 6 | 2 | 1 | 414 | 1 | 414 | 5.20E-233 | 816.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074383.t1 | O48716 | 40.4 | 270 | 145 | 4 | 140 | 409 | 165 | 418 | 1.0e-48 | 195.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074383.t1 | A0A072VA53 | 98.1 | 415 | 6 | 2 | 1 | 414 | 1 | 414 | 3.7e-233 | 816.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04986 | MS.gene074383 | 0.803228 | 3.85E-49 | -1.69E-46 |
| MS.gene050082 | MS.gene074383 | 0.817845 | 2.67E-52 | -1.69E-46 |
| MS.gene050170 | MS.gene074383 | -0.815535 | 8.80E-52 | -1.69E-46 |
| MS.gene050323 | MS.gene074383 | -0.809328 | 2.00E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene074383 | -0.839878 | 1.22E-57 | -1.69E-46 |
| MS.gene050504 | MS.gene074383 | -0.807975 | 3.89E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene074383 | -0.827116 | 1.87E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene074383 | -0.804079 | 2.57E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene074383 | -0.802229 | 6.19E-49 | -1.69E-46 |
| MS.gene051138 | MS.gene074383 | 0.815755 | 7.86E-52 | -1.69E-46 |
| MS.gene051364 | MS.gene074383 | 0.8008 | 1.22E-48 | -1.69E-46 |
| MS.gene051366 | MS.gene074383 | 0.818496 | 1.90E-52 | -1.69E-46 |
| MS.gene051651 | MS.gene074383 | 0.814344 | 1.62E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene074383 | -0.80912 | 2.21E-50 | -1.69E-46 |
| MS.gene055251 | MS.gene074383 | 0.819005 | 1.46E-52 | -1.69E-46 |
| MS.gene055748 | MS.gene074383 | -0.81389 | 2.04E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene074383 | -0.833728 | 4.51E-56 | -1.69E-46 |
| MS.gene055776 | MS.gene074383 | -0.828767 | 7.49E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene074383 | -0.83212 | 1.13E-55 | -1.69E-46 |
| MS.gene055942 | MS.gene074383 | 0.8631 | 3.17E-64 | -1.69E-46 |
| MS.gene056504 | MS.gene074383 | -0.84126 | 5.29E-58 | -1.69E-46 |
| MS.gene056856 | MS.gene074383 | 0.816569 | 5.17E-52 | -1.69E-46 |
| MS.gene056857 | MS.gene074383 | 0.83449 | 2.91E-56 | -1.69E-46 |
| MS.gene058268 | MS.gene074383 | 0.800691 | 1.28E-48 | -1.69E-46 |
| MS.gene058334 | MS.gene074383 | 0.805622 | 1.22E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene074383 | -0.800851 | 1.19E-48 | -1.69E-46 |
| MS.gene059703 | MS.gene074383 | 0.80062 | 1.32E-48 | -1.69E-46 |
| MS.gene059865 | MS.gene074383 | -0.821542 | 3.82E-53 | -1.69E-46 |
| MS.gene060703 | MS.gene074383 | -0.802892 | 4.52E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene074383 | -0.816155 | 6.40E-52 | -1.69E-46 |
| MS.gene060778 | MS.gene074383 | -0.801314 | 9.55E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene074383 | -0.831335 | 1.77E-55 | -1.69E-46 |
| MS.gene061044 | MS.gene074383 | 0.844226 | 8.62E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene074383 | MS.gene070758 | PPI |
| MS.gene074383 | MS.gene045436 | PPI |
| MS.gene070761 | MS.gene074383 | PPI |
| MS.gene070760 | MS.gene074383 | PPI |
| MS.gene006731 | MS.gene074383 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074383.t1 | MTR_3g078380 | 98.072 | 415 | 6 | 2 | 1 | 414 | 1 | 414 | 0.0 | 827 |
| MS.gene074383.t1 | MTR_4g106480 | 61.502 | 426 | 127 | 10 | 1 | 414 | 1 | 401 | 1.32e-166 | 473 |
| MS.gene074383.t1 | MTR_5g035980 | 51.214 | 412 | 156 | 13 | 37 | 414 | 48 | 448 | 2.41e-125 | 370 |
| MS.gene074383.t1 | MTR_8g089650 | 45.128 | 390 | 186 | 12 | 30 | 411 | 61 | 430 | 2.13e-100 | 306 |
| MS.gene074383.t1 | MTR_4g104410 | 40.452 | 398 | 186 | 13 | 17 | 410 | 14 | 364 | 9.08e-82 | 256 |
| MS.gene074383.t1 | MTR_1g021590 | 37.561 | 410 | 218 | 12 | 3 | 409 | 57 | 431 | 3.88e-77 | 247 |
| MS.gene074383.t1 | MTR_5g018520 | 39.655 | 348 | 173 | 11 | 69 | 409 | 102 | 419 | 3.30e-75 | 241 |
| MS.gene074383.t1 | MTR_4g068457 | 39.067 | 343 | 188 | 9 | 69 | 409 | 133 | 456 | 4.27e-71 | 232 |
| MS.gene074383.t1 | MTR_2g060070 | 37.337 | 383 | 203 | 14 | 33 | 412 | 34 | 382 | 5.48e-67 | 219 |
| MS.gene074383.t1 | MTR_3g110185 | 34.153 | 366 | 201 | 13 | 53 | 411 | 79 | 411 | 1.16e-48 | 177 |
| MS.gene074383.t1 | MTR_2g101410 | 32.576 | 396 | 222 | 13 | 29 | 409 | 42 | 407 | 2.11e-47 | 168 |
| MS.gene074383.t1 | MTR_7g086360 | 24.771 | 327 | 182 | 12 | 55 | 372 | 48 | 319 | 1.98e-12 | 68.6 |
| MS.gene074383.t1 | MTR_4g105700 | 26.449 | 276 | 171 | 13 | 114 | 372 | 327 | 587 | 8.99e-12 | 67.4 |
| MS.gene074383.t1 | MTR_1g090827 | 26.214 | 206 | 115 | 4 | 176 | 357 | 88 | 280 | 3.90e-11 | 65.5 |
| MS.gene074383.t1 | MTR_3g088545 | 28.311 | 219 | 126 | 9 | 193 | 408 | 97 | 287 | 4.41e-11 | 64.3 |
| MS.gene074383.t1 | MTR_4g119620 | 29.500 | 200 | 113 | 9 | 211 | 407 | 15 | 189 | 8.82e-11 | 63.2 |
| MS.gene074383.t1 | MTR_7g095190 | 29.050 | 179 | 110 | 5 | 180 | 352 | 62 | 229 | 9.73e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074383.t1 | AT5G50120 | 56.720 | 372 | 135 | 8 | 55 | 413 | 30 | 388 | 6.57e-140 | 405 |
| MS.gene074383.t1 | AT1G24130 | 54.103 | 390 | 148 | 12 | 37 | 414 | 45 | 415 | 9.28e-123 | 362 |
| MS.gene074383.t1 | AT1G24530 | 45.407 | 381 | 181 | 11 | 32 | 411 | 51 | 405 | 2.64e-96 | 295 |
| MS.gene074383.t1 | AT2G26490 | 41.228 | 342 | 176 | 7 | 69 | 409 | 101 | 418 | 1.13e-77 | 248 |
| MS.gene074383.t1 | AT2G26490 | 25.641 | 273 | 153 | 8 | 39 | 302 | 185 | 416 | 7.93e-11 | 63.9 |
| MS.gene074383.t1 | AT3G18950 | 39.612 | 361 | 187 | 10 | 54 | 409 | 130 | 464 | 6.28e-74 | 239 |
| MS.gene074383.t1 | AT3G50390 | 38.040 | 347 | 184 | 11 | 69 | 409 | 103 | 424 | 2.46e-71 | 232 |
| MS.gene074383.t1 | AT1G49450 | 38.286 | 350 | 185 | 9 | 69 | 409 | 139 | 466 | 7.90e-71 | 231 |
| MS.gene074383.t1 | AT3G51930 | 38.158 | 380 | 195 | 14 | 45 | 412 | 44 | 395 | 7.57e-67 | 218 |
| MS.gene074383.t1 | AT4G34380 | 35.949 | 395 | 219 | 11 | 24 | 409 | 87 | 456 | 1.41e-66 | 220 |
| MS.gene074383.t1 | AT1G47610 | 37.500 | 344 | 188 | 9 | 69 | 409 | 29 | 348 | 1.45e-66 | 216 |
| MS.gene074383.t1 | AT1G21650 | 32.386 | 176 | 98 | 7 | 180 | 352 | 523 | 680 | 8.37e-12 | 67.8 |
| MS.gene074383.t1 | AT2G43770 | 24.405 | 336 | 187 | 13 | 49 | 372 | 37 | 317 | 8.48e-12 | 66.6 |
| MS.gene074383.t1 | AT1G21651 | 32.386 | 176 | 98 | 7 | 180 | 352 | 523 | 680 | 9.25e-12 | 67.4 |
| MS.gene074383.t1 | AT3G49660 | 20.950 | 358 | 212 | 12 | 57 | 407 | 19 | 312 | 1.40e-11 | 65.5 |
| MS.gene074383.t1 | AT4G02730 | 29.801 | 151 | 80 | 5 | 261 | 409 | 31 | 157 | 4.58e-11 | 64.3 |
| MS.gene074383.t1 | AT5G50230 | 24.820 | 278 | 160 | 11 | 98 | 352 | 215 | 466 | 5.72e-11 | 64.7 |
| MS.gene074383.t1 | AT1G48630 | 28.270 | 237 | 122 | 9 | 77 | 307 | 31 | 225 | 6.25e-11 | 63.5 |
Find 92 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTGTTGTTTGTCTATTT+TGG | 0.194004 | 3.4:-75015475 | MS.gene074383:CDS |
| CTGATAAAACCATAAGAATT+TGG | 0.253308 | 3.4:-75015515 | MS.gene074383:CDS |
| TACCTTCAACCTCAACAATT+AGG | 0.263211 | 3.4:-75016500 | MS.gene074383:CDS |
| AACTAAAGATTTCACTTGTT+TGG | 0.280735 | 3.4:-75015922 | MS.gene074383:CDS |
| AACACCCCTCCAAATTCTTA+TGG | 0.289644 | 3.4:+75015506 | None:intergenic |
| TAGTTTGGACTGTGACATTA+AGG | 0.303285 | 3.4:-75015355 | MS.gene074383:CDS |
| GGTTGTTGTGTCTTCTTCAT+AGG | 0.314132 | 3.4:+75016271 | None:intergenic |
| TCCTGCTATTACTTTGTTGT+TGG | 0.317202 | 3.4:+75016250 | None:intergenic |
| AGCGACGACAACGACGAAAA+TGG | 0.332042 | 3.4:-75015627 | MS.gene074383:CDS |
| TTTAGTCTATAGTGGTAGTT+TGG | 0.333469 | 3.4:-75015370 | MS.gene074383:CDS |
| TAATTCTGGTATCAATGCTT+TGG | 0.370588 | 3.4:-75015727 | MS.gene074383:CDS |
| GTGGGAAGTGTGGTTGATGT+GGG | 0.370823 | 3.4:+75016412 | None:intergenic |
| ACCTTCAACCTCAACAATTA+GGG | 0.384929 | 3.4:-75016499 | MS.gene074383:CDS |
| TTTGTTTGATTGAATTACTA+AGG | 0.389364 | 3.4:+75016211 | None:intergenic |
| TGCTTGTGATAGATCAATAT+TGG | 0.389864 | 3.4:-75015670 | MS.gene074383:CDS |
| AGAGTTGTTGTGGGATTTGA+GGG | 0.409026 | 3.4:+75016379 | None:intergenic |
| ACCTTGGAGAAACATAATTC+TGG | 0.418481 | 3.4:-75015741 | MS.gene074383:CDS |
| GGGACAGAACAATCAAAATC+TGG | 0.425270 | 3.4:-75015947 | MS.gene074383:CDS |
| TCCCTTGCTCTGTCTAAAGA+TGG | 0.428467 | 3.4:-75015993 | MS.gene074383:CDS |
| GGGATTGTGACGAGGGTTGA+GGG | 0.435180 | 3.4:+75016433 | None:intergenic |
| GTTCTGGTTGGTGCATTAAG+AGG | 0.438267 | 3.4:-75015597 | MS.gene074383:CDS |
| AAGAGTTGTTGTGGGATTTG+AGG | 0.442653 | 3.4:+75016378 | None:intergenic |
| GCGGTTGTAGTTTCTTATGA+TGG | 0.449299 | 3.4:-75015864 | MS.gene074383:CDS |
| GTGATAGATCAATATTGGTA+TGG | 0.453135 | 3.4:-75015665 | MS.gene074383:CDS |
| CCATGTTGTGATTTCTCTGT+CGG | 0.456976 | 3.4:+75016304 | None:intergenic |
| GGGGATTGTGACGAGGGTTG+AGG | 0.459466 | 3.4:+75016432 | None:intergenic |
| ACATTCCCTTGTTGATACCT+TGG | 0.465769 | 3.4:-75015757 | MS.gene074383:CDS |
| ACCCTAATTGTTGAGGTTGA+AGG | 0.465908 | 3.4:+75016498 | None:intergenic |
| GAGAGTGAGAGAGGATGTGT+AGG | 0.475277 | 3.4:+75016355 | None:intergenic |
| CAACAAAGTAATAGCAGGAA+AGG | 0.477780 | 3.4:-75016246 | MS.gene074383:CDS |
| GATGAATCTATTCTATATTC+CGG | 0.478003 | 3.4:-75015693 | MS.gene074383:CDS |
| TTCGGTAAATTCCTCCTCAC+TGG | 0.482358 | 3.4:-75016332 | MS.gene074383:CDS |
| AAGACCATAAAATCCGTGTC+TGG | 0.486087 | 3.4:-75016166 | MS.gene074383:CDS |
| GGTGGGAAGTGTGGTTGATG+TGG | 0.489772 | 3.4:+75016411 | None:intergenic |
| TTCCATCTTTAGACAGAGCA+AGG | 0.491964 | 3.4:+75015991 | None:intergenic |
| TATAGCATCATCGTGGGCGT+TGG | 0.495583 | 3.4:+75015890 | None:intergenic |
| ATTGTTGAGGTTGAAGGTAG+TGG | 0.497025 | 3.4:+75016504 | None:intergenic |
| TGGACTGTGACATTAAGGTT+TGG | 0.498273 | 3.4:-75015350 | MS.gene074383:CDS |
| ACATCCTCTCTCACTCTCTT+CGG | 0.500584 | 3.4:-75016350 | MS.gene074383:CDS |
| GGTAGAATAATTTAGATAGC+AGG | 0.502112 | 3.4:+75015315 | None:intergenic |
| GGTCTTGATGAGCACTGAAA+AGG | 0.506634 | 3.4:+75016183 | None:intergenic |
| TATTGTGTTTAGCTGTTGTG+TGG | 0.515512 | 3.4:-75015560 | MS.gene074383:CDS |
| TGATGTGGGGATTGTGACGA+GGG | 0.520065 | 3.4:+75016426 | None:intergenic |
| TGGGAAGTGTGGTTGATGTG+GGG | 0.523842 | 3.4:+75016413 | None:intergenic |
| AAAGTGTGGAAGAATCTTCA+AGG | 0.525692 | 3.4:-75015807 | MS.gene074383:CDS |
| ATAAGAATTTGGAGGGGTGT+TGG | 0.529006 | 3.4:-75015504 | MS.gene074383:CDS |
| TTGATGTGGGGATTGTGACG+AGG | 0.538964 | 3.4:+75016425 | None:intergenic |
| TGTGTAGGAAGAGTTGTTGT+GGG | 0.543920 | 3.4:+75016370 | None:intergenic |
| GGAGGCTGCGTTGTGAAGTG+AGG | 0.545239 | 3.4:+75016468 | None:intergenic |
| GTAGTGGTTGGAGTGAGATG+AGG | 0.547014 | 3.4:+75016520 | None:intergenic |
| TTGAGGTTGAAGGTAGTGGT+TGG | 0.548826 | 3.4:+75016508 | None:intergenic |
| CGTTGGTTAATTTCCAGACA+CGG | 0.549331 | 3.4:+75016153 | None:intergenic |
| TATTGATCTATCACAAGCAC+CGG | 0.554977 | 3.4:+75015674 | None:intergenic |
| TTATGATGAGGTGGGAAGTG+TGG | 0.555083 | 3.4:+75016402 | None:intergenic |
| TGATAGATCAATATTGGTAT+GGG | 0.557167 | 3.4:-75015664 | MS.gene074383:CDS |
| ATTGTGTTTAGCTGTTGTGT+GGG | 0.558122 | 3.4:-75015559 | MS.gene074383:CDS |
| TAAAACCATAAGAATTTGGA+GGG | 0.559125 | 3.4:-75015511 | MS.gene074383:CDS |
| ACCAACAACAAAGTAATAGC+AGG | 0.559319 | 3.4:-75016251 | MS.gene074383:CDS |
| TTTACCGAAGAGAGTGAGAG+AGG | 0.559757 | 3.4:+75016346 | None:intergenic |
| AACAAAGTAATAGCAGGAAA+GGG | 0.563035 | 3.4:-75016245 | MS.gene074383:CDS |
| TTGTGACGAGGGTTGAGGGA+AGG | 0.567186 | 3.4:+75016437 | None:intergenic |
| GAAGCACGGTCACCAAGTGT+TGG | 0.569276 | 3.4:+75016098 | None:intergenic |
| ATAAAACCATAAGAATTTGG+AGG | 0.571975 | 3.4:-75015512 | MS.gene074383:CDS |
| TTTGAGGGTTATGATGAGGT+GGG | 0.572272 | 3.4:+75016394 | None:intergenic |
| TGTTGTGTCTTCTTCATAGG+TGG | 0.573502 | 3.4:+75016274 | None:intergenic |
| GAGGCTGCGTTGTGAAGTGA+GGG | 0.579525 | 3.4:+75016469 | None:intergenic |
| TGTGTCTACGAATTTGGACA+TGG | 0.587510 | 3.4:+75016054 | None:intergenic |
| GTCTTGATGAGCACTGAAAA+GGG | 0.588648 | 3.4:+75016184 | None:intergenic |
| ATGCACGTGGGTTCATCATG+TGG | 0.591120 | 3.4:-75016027 | MS.gene074383:CDS |
| GGGATTTGAGGGTTATGATG+AGG | 0.594826 | 3.4:+75016390 | None:intergenic |
| ATTTGAGGGTTATGATGAGG+TGG | 0.595558 | 3.4:+75016393 | None:intergenic |
| ACCAGAATTATGTTTCTCCA+AGG | 0.595999 | 3.4:+75015740 | None:intergenic |
| CGCGTTTATAGCATCATCGT+GGG | 0.597855 | 3.4:+75015884 | None:intergenic |
| ATGTGTAGGAAGAGTTGTTG+TGG | 0.597938 | 3.4:+75016369 | None:intergenic |
| GTAGCAACACTTCCAACACT+TGG | 0.604456 | 3.4:-75016110 | MS.gene074383:CDS |
| GAGGTTGACCCTAATTGTTG+AGG | 0.610635 | 3.4:+75016491 | None:intergenic |
| TCCATCTTTAGACAGAGCAA+GGG | 0.623705 | 3.4:+75015992 | None:intergenic |
| ATGGAATATCACTATGACAG+TGG | 0.625164 | 3.4:-75016548 | MS.gene074383:CDS |
| CTGATAAAAGAATCAAAGTG+TGG | 0.636026 | 3.4:-75015821 | MS.gene074383:CDS |
| TTTCTCCAAGGTATCAACAA+GGG | 0.639619 | 3.4:+75015752 | None:intergenic |
| TTGGTATGGGAGAAAGAAGA+CGG | 0.639629 | 3.4:-75015651 | MS.gene074383:CDS |
| TGTCGGATGAACCAGTGAGG+AGG | 0.641223 | 3.4:+75016321 | None:intergenic |
| TGAGGGAAGGAACTGAGAGG+AGG | 0.642268 | 3.4:+75016450 | None:intergenic |
| GTTTCTCCAAGGTATCAACA+AGG | 0.648819 | 3.4:+75015751 | None:intergenic |
| TATGATGGAACTGTCTACAG+TGG | 0.654469 | 3.4:-75015849 | MS.gene074383:CDS |
| CCGACAGAGAAATCACAACA+TGG | 0.662721 | 3.4:-75016304 | MS.gene074383:CDS |
| GCTGCGTTGTGAAGTGAGGG+AGG | 0.663813 | 3.4:+75016472 | None:intergenic |
| CCGCGTTTATAGCATCATCG+TGG | 0.668731 | 3.4:+75015883 | None:intergenic |
| AAAACCATAAGAATTTGGAG+GGG | 0.688455 | 3.4:-75015510 | MS.gene074383:CDS |
| GGTTGAGGGAAGGAACTGAG+AGG | 0.692947 | 3.4:+75016447 | None:intergenic |
| CCACGATGATGCTATAAACG+CGG | 0.695028 | 3.4:-75015883 | MS.gene074383:CDS |
| CTCTGTCGGATGAACCAGTG+AGG | 0.707922 | 3.4:+75016318 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTTGATTGAATTACTA+AGG | + | chr3.4:75015666-75015685 | None:intergenic | 20.0% |
| !!! | TTATTGTTGTTTGTCTATTT+TGG | - | chr3.4:75016399-75016418 | MS.gene074383:CDS | 20.0% |
| ! | AACTAAAGATTTCACTTGTT+TGG | - | chr3.4:75015952-75015971 | MS.gene074383:CDS | 25.0% |
| ! | ATAAAACCATAAGAATTTGG+AGG | - | chr3.4:75016362-75016381 | MS.gene074383:CDS | 25.0% |
| ! | CTGATAAAACCATAAGAATT+TGG | - | chr3.4:75016359-75016378 | MS.gene074383:CDS | 25.0% |
| ! | GATGAATCTATTCTATATTC+CGG | - | chr3.4:75016181-75016200 | MS.gene074383:CDS | 25.0% |
| ! | TAAAACCATAAGAATTTGGA+GGG | - | chr3.4:75016363-75016382 | MS.gene074383:CDS | 25.0% |
| ! | TGATAGATCAATATTGGTAT+GGG | - | chr3.4:75016210-75016229 | MS.gene074383:CDS | 25.0% |
| !!! | ATTTTTTGTGTCTACGAATT+TGG | + | chr3.4:75015829-75015848 | None:intergenic | 25.0% |
| !!! | GTTTTTTGGGATTAAGATTT+TGG | + | chr3.4:75015801-75015820 | None:intergenic | 25.0% |
| AAAACCATAAGAATTTGGAG+GGG | - | chr3.4:75016364-75016383 | MS.gene074383:CDS | 30.0% | |
| AACAAAGTAATAGCAGGAAA+GGG | - | chr3.4:75015629-75015648 | MS.gene074383:CDS | 30.0% | |
| CCACTATAGACTAAAAAAGA+TGG | + | chr3.4:75016499-75016518 | None:intergenic | 30.0% | |
| CTGATAAAAGAATCAAAGTG+TGG | - | chr3.4:75016053-75016072 | MS.gene074383:CDS | 30.0% | |
| GTGATAGATCAATATTGGTA+TGG | - | chr3.4:75016209-75016228 | MS.gene074383:CDS | 30.0% | |
| TAATTCTGGTATCAATGCTT+TGG | - | chr3.4:75016147-75016166 | MS.gene074383:CDS | 30.0% | |
| TGCTTGTGATAGATCAATAT+TGG | - | chr3.4:75016204-75016223 | MS.gene074383:CDS | 30.0% | |
| TTTAGTCTATAGTGGTAGTT+TGG | - | chr3.4:75016504-75016523 | MS.gene074383:CDS | 30.0% | |
| ! | AGTTTTTGTACTCTGTTTCA+TGG | - | chr3.4:75015906-75015925 | MS.gene074383:CDS | 30.0% |
| ! | CTACATGAGTGTATTTTGTT+TGG | + | chr3.4:75015748-75015767 | None:intergenic | 30.0% |
| ! | GTTTTTGTACTCTGTTTCAT+GGG | - | chr3.4:75015907-75015926 | MS.gene074383:CDS | 30.0% |
| !! | TGTTGTTTGTCTATTTTGGA+AGG | - | chr3.4:75016403-75016422 | MS.gene074383:CDS | 30.0% |
| !!! | CCATCTTTTTTAGTCTATAG+TGG | - | chr3.4:75016496-75016515 | MS.gene074383:CDS | 30.0% |
| !!! | GAATTTGGACATGGTTTTTT+GGG | + | chr3.4:75015814-75015833 | None:intergenic | 30.0% |
| AAAGTGTGGAAGAATCTTCA+AGG | - | chr3.4:75016067-75016086 | MS.gene074383:CDS | 35.0% | |
| ACCAACAACAAAGTAATAGC+AGG | - | chr3.4:75015623-75015642 | MS.gene074383:CDS | 35.0% | |
| ACCAGAATTATGTTTCTCCA+AGG | + | chr3.4:75016137-75016156 | None:intergenic | 35.0% | |
| ACCTTCAACCTCAACAATTA+GGG | - | chr3.4:75015375-75015394 | MS.gene074383:CDS | 35.0% | |
| ACCTTGGAGAAACATAATTC+TGG | - | chr3.4:75016133-75016152 | MS.gene074383:CDS | 35.0% | |
| ATGGAATATCACTATGACAG+TGG | - | chr3.4:75015326-75015345 | MS.gene074383:CDS | 35.0% | |
| ATTGTGTTTAGCTGTTGTGT+GGG | - | chr3.4:75016315-75016334 | MS.gene074383:CDS | 35.0% | |
| CAACAAAGTAATAGCAGGAA+AGG | - | chr3.4:75015628-75015647 | MS.gene074383:CDS | 35.0% | |
| CAACGACGAAAATGGAAAAA+TGG | - | chr3.4:75016255-75016274 | MS.gene074383:CDS | 35.0% | |
| CGAAAATGGAAAAATGGTTC+TGG | - | chr3.4:75016261-75016280 | MS.gene074383:CDS | 35.0% | |
| TACCTTCAACCTCAACAATT+AGG | - | chr3.4:75015374-75015393 | MS.gene074383:CDS | 35.0% | |
| TAGACACAAAAAATGCACGT+GGG | - | chr3.4:75015835-75015854 | MS.gene074383:CDS | 35.0% | |
| TAGTTTGGACTGTGACATTA+AGG | - | chr3.4:75016519-75016538 | MS.gene074383:CDS | 35.0% | |
| TATTGATCTATCACAAGCAC+CGG | + | chr3.4:75016203-75016222 | None:intergenic | 35.0% | |
| TATTGTGTTTAGCTGTTGTG+TGG | - | chr3.4:75016314-75016333 | MS.gene074383:CDS | 35.0% | |
| ! | ATTTCCAGACACGGATTTTA+TGG | + | chr3.4:75015715-75015734 | None:intergenic | 35.0% |
| ! | TCCTGCTATTACTTTGTTGT+TGG | + | chr3.4:75015627-75015646 | None:intergenic | 35.0% |
| ! | TTTCTCCAAGGTATCAACAA+GGG | + | chr3.4:75016125-75016144 | None:intergenic | 35.0% |
| !! | AATGGAAAAATGGTTCTGGT+TGG | - | chr3.4:75016265-75016284 | MS.gene074383:CDS | 35.0% |
| !! | AGTGTATTTTGTTTGGTCGT+TGG | + | chr3.4:75015741-75015760 | None:intergenic | 35.0% |
| !! | GGATTAAGATTTTGGAAGCA+CGG | + | chr3.4:75015793-75015812 | None:intergenic | 35.0% |
| !! | TCTATTTTGGAAGGACATCA+AGG | - | chr3.4:75016412-75016431 | MS.gene074383:CDS | 35.0% |
| !!! | CGAATTTGGACATGGTTTTT+TGG | + | chr3.4:75015815-75015834 | None:intergenic | 35.0% |
| AACACCCCTCCAAATTCTTA+TGG | + | chr3.4:75016371-75016390 | None:intergenic | 40.0% | |
| AAGACCATAAAATCCGTGTC+TGG | - | chr3.4:75015708-75015727 | MS.gene074383:CDS | 40.0% | |
| AAGAGTTGTTGTGGGATTTG+AGG | + | chr3.4:75015499-75015518 | None:intergenic | 40.0% | |
| ACATTCCCTTGTTGATACCT+TGG | - | chr3.4:75016117-75016136 | MS.gene074383:CDS | 40.0% | |
| ACCCTAATTGTTGAGGTTGA+AGG | + | chr3.4:75015379-75015398 | None:intergenic | 40.0% | |
| AGAGTTGTTGTGGGATTTGA+GGG | + | chr3.4:75015498-75015517 | None:intergenic | 40.0% | |
| ATGTGTAGGAAGAGTTGTTG+TGG | + | chr3.4:75015508-75015527 | None:intergenic | 40.0% | |
| ATTGTTGAGGTTGAAGGTAG+TGG | + | chr3.4:75015373-75015392 | None:intergenic | 40.0% | |
| ATTTGAGGGTTATGATGAGG+TGG | + | chr3.4:75015484-75015503 | None:intergenic | 40.0% | |
| CCATGTTGTGATTTCTCTGT+CGG | + | chr3.4:75015573-75015592 | None:intergenic | 40.0% | |
| GCGGTTGTAGTTTCTTATGA+TGG | - | chr3.4:75016010-75016029 | MS.gene074383:CDS | 40.0% | |
| GGGACAGAACAATCAAAATC+TGG | - | chr3.4:75015927-75015946 | MS.gene074383:CDS | 40.0% | |
| GGTTGTTGTGTCTTCTTCAT+AGG | + | chr3.4:75015606-75015625 | None:intergenic | 40.0% | |
| GTAGACACAAAAAATGCACG+TGG | - | chr3.4:75015834-75015853 | MS.gene074383:CDS | 40.0% | |
| TCCATCTTTAGACAGAGCAA+GGG | + | chr3.4:75015885-75015904 | None:intergenic | 40.0% | |
| TGGACTGTGACATTAAGGTT+TGG | - | chr3.4:75016524-75016543 | MS.gene074383:CDS | 40.0% | |
| TGTGTAGGAAGAGTTGTTGT+GGG | + | chr3.4:75015507-75015526 | None:intergenic | 40.0% | |
| TGTGTCTACGAATTTGGACA+TGG | + | chr3.4:75015823-75015842 | None:intergenic | 40.0% | |
| TGTTGTGTCTTCTTCATAGG+TGG | + | chr3.4:75015603-75015622 | None:intergenic | 40.0% | |
| TTCCATCTTTAGACAGAGCA+AGG | + | chr3.4:75015886-75015905 | None:intergenic | 40.0% | |
| TTGGTATGGGAGAAAGAAGA+CGG | - | chr3.4:75016223-75016242 | MS.gene074383:CDS | 40.0% | |
| TTTGAGGGTTATGATGAGGT+GGG | + | chr3.4:75015483-75015502 | None:intergenic | 40.0% | |
| ! | ATAAGAATTTGGAGGGGTGT+TGG | - | chr3.4:75016370-75016389 | MS.gene074383:CDS | 40.0% |
| ! | CGTTGGTTAATTTCCAGACA+CGG | + | chr3.4:75015724-75015743 | None:intergenic | 40.0% |
| ! | GTTTCTCCAAGGTATCAACA+AGG | + | chr3.4:75016126-75016145 | None:intergenic | 40.0% |
| ! | TATGATGGAACTGTCTACAG+TGG | - | chr3.4:75016025-75016044 | MS.gene074383:CDS | 40.0% |
| !! | GTCTTGATGAGCACTGAAAA+GGG | + | chr3.4:75015693-75015712 | None:intergenic | 40.0% |
| ACATCCTCTCTCACTCTCTT+CGG | - | chr3.4:75015524-75015543 | MS.gene074383:CDS | 45.0% | |
| CCACGATGATGCTATAAACG+CGG | - | chr3.4:75015991-75016010 | MS.gene074383:CDS | 45.0% | |
| CCGACAGAGAAATCACAACA+TGG | - | chr3.4:75015570-75015589 | MS.gene074383:CDS | 45.0% | |
| CGCGTTTATAGCATCATCGT+GGG | + | chr3.4:75015993-75016012 | None:intergenic | 45.0% | |
| GAGGTTGACCCTAATTGTTG+AGG | + | chr3.4:75015386-75015405 | None:intergenic | 45.0% | |
| GGGATTTGAGGGTTATGATG+AGG | + | chr3.4:75015487-75015506 | None:intergenic | 45.0% | |
| GTAGCAACACTTCCAACACT+TGG | - | chr3.4:75015764-75015783 | MS.gene074383:CDS | 45.0% | |
| TCCCTTGCTCTGTCTAAAGA+TGG | - | chr3.4:75015881-75015900 | MS.gene074383:CDS | 45.0% | |
| TTATGATGAGGTGGGAAGTG+TGG | + | chr3.4:75015475-75015494 | None:intergenic | 45.0% | |
| TTCGGTAAATTCCTCCTCAC+TGG | - | chr3.4:75015542-75015561 | MS.gene074383:CDS | 45.0% | |
| TTTACCGAAGAGAGTGAGAG+AGG | + | chr3.4:75015531-75015550 | None:intergenic | 45.0% | |
| ! | GTGTGGGATTTTGTGTGTAG+TGG | - | chr3.4:75016331-75016350 | MS.gene074383:CDS | 45.0% |
| ! | GTTCTGGTTGGTGCATTAAG+AGG | - | chr3.4:75016277-75016296 | MS.gene074383:CDS | 45.0% |
| ! | TTGAGGTTGAAGGTAGTGGT+TGG | + | chr3.4:75015369-75015388 | None:intergenic | 45.0% |
| !! | GGTCTTGATGAGCACTGAAA+AGG | + | chr3.4:75015694-75015713 | None:intergenic | 45.0% |
| AGCGACGACAACGACGAAAA+TGG | - | chr3.4:75016247-75016266 | MS.gene074383:CDS | 50.0% | |
| ATGCACGTGGGTTCATCATG+TGG | - | chr3.4:75015847-75015866 | MS.gene074383:CDS | 50.0% | |
| CCGCGTTTATAGCATCATCG+TGG | + | chr3.4:75015994-75016013 | None:intergenic | 50.0% | |
| GAGAGTGAGAGAGGATGTGT+AGG | + | chr3.4:75015522-75015541 | None:intergenic | 50.0% | |
| GTAGTGGTTGGAGTGAGATG+AGG | + | chr3.4:75015357-75015376 | None:intergenic | 50.0% | |
| TATAGCATCATCGTGGGCGT+TGG | + | chr3.4:75015987-75016006 | None:intergenic | 50.0% | |
| TGATGTGGGGATTGTGACGA+GGG | + | chr3.4:75015451-75015470 | None:intergenic | 50.0% | |
| TTGATGTGGGGATTGTGACG+AGG | + | chr3.4:75015452-75015471 | None:intergenic | 50.0% | |
| ! | GTGGGAAGTGTGGTTGATGT+GGG | + | chr3.4:75015465-75015484 | None:intergenic | 50.0% |
| ! | TGGGAAGTGTGGTTGATGTG+GGG | + | chr3.4:75015464-75015483 | None:intergenic | 50.0% |
| CTCTGTCGGATGAACCAGTG+AGG | + | chr3.4:75015559-75015578 | None:intergenic | 55.0% | |
| GAAGCACGGTCACCAAGTGT+TGG | + | chr3.4:75015779-75015798 | None:intergenic | 55.0% | |
| GAGGCTGCGTTGTGAAGTGA+GGG | + | chr3.4:75015408-75015427 | None:intergenic | 55.0% | |
| GGGATTGTGACGAGGGTTGA+GGG | + | chr3.4:75015444-75015463 | None:intergenic | 55.0% | |
| GGTTGAGGGAAGGAACTGAG+AGG | + | chr3.4:75015430-75015449 | None:intergenic | 55.0% | |
| TGAGGGAAGGAACTGAGAGG+AGG | + | chr3.4:75015427-75015446 | None:intergenic | 55.0% | |
| TGTCGGATGAACCAGTGAGG+AGG | + | chr3.4:75015556-75015575 | None:intergenic | 55.0% | |
| TTGTGACGAGGGTTGAGGGA+AGG | + | chr3.4:75015440-75015459 | None:intergenic | 55.0% | |
| ! | GGTGGGAAGTGTGGTTGATG+TGG | + | chr3.4:75015466-75015485 | None:intergenic | 55.0% |
| GCTGCGTTGTGAAGTGAGGG+AGG | + | chr3.4:75015405-75015424 | None:intergenic | 60.0% | |
| GGAGGCTGCGTTGTGAAGTG+AGG | + | chr3.4:75015409-75015428 | None:intergenic | 60.0% | |
| GGGGATTGTGACGAGGGTTG+AGG | + | chr3.4:75015445-75015464 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 75015326 | 75016570 | 75015326 | ID=MS.gene074383 |
| chr3.4 | mRNA | 75015326 | 75016570 | 75015326 | ID=MS.gene074383.t1;Parent=MS.gene074383 |
| chr3.4 | exon | 75015326 | 75016570 | 75015326 | ID=MS.gene074383.t1.exon1;Parent=MS.gene074383.t1 |
| chr3.4 | CDS | 75015326 | 75016570 | 75015326 | ID=cds.MS.gene074383.t1;Parent=MS.gene074383.t1 |
| Gene Sequence |
| Protein sequence |
