AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50200.t1 MTR_3g054030 97.602 417 10 0 58 474 64 480 0.0 838
MS.gene50200.t1 MTR_5g072020 97.602 417 10 0 58 474 64 480 0.0 838
MS.gene50200.t1 MTR_1g018970 81.139 281 53 0 58 338 63 343 3.84e-167 475
MS.gene50200.t1 MTR_2g090820 75.410 122 18 1 335 444 15 136 1.95e-54 179
MS.gene50200.t1 MTR_1g019030 90.722 97 9 0 378 474 27 123 3.44e-52 172
MS.gene50200.t1 MTR_1g019000 94.595 74 4 0 299 372 21 94 3.30e-42 145
MS.gene50200.t1 MTR_6g033290 25.393 382 257 7 105 473 101 467 2.06e-34 135
MS.gene50200.t1 MTR_3g008020 22.568 257 169 7 104 340 100 346 8.36e-15 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50200.t1 AT4G36480 78.417 417 90 0 58 474 63 479 0.0 704
MS.gene50200.t1 AT4G36480 78.417 417 90 0 58 474 63 479 0.0 704
MS.gene50200.t1 AT4G36480 82.051 273 49 0 58 330 63 335 1.14e-174 494
MS.gene50200.t1 AT3G48780 26.247 381 253 7 105 472 101 466 3.11e-36 140
MS.gene50200.t1 AT3G48780 26.247 381 253 7 105 472 101 466 3.11e-36 140
MS.gene50200.t1 AT5G23670 25.459 381 256 7 105 472 101 466 1.90e-35 138
MS.gene50200.t1 AT5G23670 25.459 381 256 7 105 472 101 466 1.90e-35 138
MS.gene50200.t1 AT3G48790 26.506 332 216 7 146 468 7 319 2.21e-27 112
MS.gene50200.t1 AT3G48790 25.566 309 202 7 173 472 2 291 5.66e-20 90.9
MS.gene50200.t1 AT5G04620 24.038 416 250 15 77 461 70 450 1.44e-19 91.7
MS.gene50200.t1 AT5G04620 23.891 293 188 7 77 344 70 352 1.10e-18 88.6
MS.gene50200.t1 AT5G04620 24.793 363 210 16 111 461 6 317 1.36e-12 69.3

Find 98 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAACTTTGTTAATATAT+TGG 0.157469 5.2:+60584665 None:intergenic
GATTCAATTCTATACTCTTA+TGG 0.157510 5.2:-60586510 MS.gene50200:CDS
CAATTTAATGATATCATCTA+AGG 0.207047 5.2:+60585248 None:intergenic
TCTTTGTTTGTGATGCATTT+AGG 0.233905 5.2:-60588956 MS.gene50200:CDS
TTCAACTTTGTTAATATATT+GGG 0.250485 5.2:+60584666 None:intergenic
TTTGGTGTGCTTGGAAGTTC+TGG 0.252911 5.2:-60585180 MS.gene50200:CDS
TGCATTTAGGACCTGCCTTT+TGG 0.256502 5.2:-60588943 MS.gene50200:CDS
ATCTATAACTCTTGCACTTC+CGG 0.274595 5.2:+60584949 None:intergenic
ATTCAATTCTATACTCTTAT+GGG 0.280484 5.2:-60586509 MS.gene50200:CDS
GCAAACTATCTTGGGCTTAT+AGG 0.284137 5.2:-60586826 MS.gene50200:CDS
AACTTCTTTACCATTAACTA+TGG 0.324145 5.2:+60586864 None:intergenic
GGCCCACATACCATAGTTAA+TGG 0.336802 5.2:-60586874 MS.gene50200:CDS
GTTGTAAAATTCAAGAATTT+AGG 0.340530 5.2:-60588902 MS.gene50200:intron
GCTATAGCCTATGGCGGCTA+GGG 0.345415 5.2:+60588574 None:intergenic
AGAACAACATTGCTGTGTTA+TGG 0.375479 5.2:-60584644 MS.gene50200:CDS
TTTAATCTCAAATAAACAAT+TGG 0.376539 5.2:+60584395 None:intergenic
TTATATCACATTCTTGGTTG+AGG 0.385958 5.2:+60588550 None:intergenic
TTTCCTCAGCAAACTATCTT+GGG 0.388101 5.2:-60586834 MS.gene50200:CDS
TATATCACATTCTTGGTTGA+GGG 0.391631 5.2:+60588551 None:intergenic
ACTTCTGCTCTAGAGAAATA+TGG 0.391710 5.2:-60586694 MS.gene50200:CDS
TATGGCGGCTAGGGGCTGCT+TGG 0.399787 5.2:+60588583 None:intergenic
CACAGCAATTCTTACACGTT+CGG 0.407510 5.2:+60584322 None:intergenic
ATAAGATTGTTTGTTTCTGC+AGG 0.409979 5.2:-60584168 MS.gene50200:CDS
AGCAACTCATTTGGTGTGCT+TGG 0.418751 5.2:-60585189 MS.gene50200:CDS
AGATGATATCATTAAATTGA+AGG 0.426232 5.2:-60585244 MS.gene50200:CDS
CAGTGCTTCTAGAAAGATAA+AGG 0.430339 5.2:+60585911 None:intergenic
GAAAGAAGATTCTGTATTTG+TGG 0.431444 5.2:-60584238 MS.gene50200:CDS
AGGCATCTGAATCATTGAAA+AGG 0.432396 5.2:-60584122 MS.gene50200:CDS
TTGGATGAGAGCAACTCATT+TGG 0.436722 5.2:-60585198 MS.gene50200:CDS
GGCTATAGCCTATGGCGGCT+AGG 0.449256 5.2:+60588573 None:intergenic
TAAGAGTATAGAATTGAATC+AGG 0.451302 5.2:+60586513 None:intergenic
TTACCATTAACTATGGTATG+TGG 0.452309 5.2:+60586871 None:intergenic
TTGATGAGTTATGTGATGAA+TGG 0.460291 5.2:-60587731 MS.gene50200:CDS
AATTTCTTATGCAGTGCTGC+TGG 0.466285 5.2:-60586895 MS.gene50200:intron
AGATCTTATAACGGCTGCTA+TGG 0.467186 5.2:-60585005 MS.gene50200:CDS
AAATAAACAATTGGTGACTC+TGG 0.467192 5.2:+60584404 None:intergenic
AAGCAGCCCCTAGCCGCCAT+AGG 0.480277 5.2:-60588581 MS.gene50200:CDS
AGAGGTCTCACTGAACACTA+TGG 0.480877 5.2:-60585156 MS.gene50200:CDS
GCACTATGAACCACCAGTGC+TGG 0.487834 5.2:-60587670 MS.gene50200:CDS
TTGAGATTAAAGAAGTCAAC+GGG 0.490251 5.2:-60584383 MS.gene50200:CDS
ATTGGCTACTGCAGGGTTGT+TGG 0.493292 5.2:-60584456 MS.gene50200:intron
GGCATCTGAATCATTGAAAA+GGG 0.498021 5.2:-60584121 MS.gene50200:CDS
GGCTGCTATGGGACATGCAT+TGG 0.498301 5.2:-60584993 MS.gene50200:CDS
TGATGAGTTATGTGATGAAT+GGG 0.510790 5.2:-60587730 MS.gene50200:CDS
TTACAGCGATTGAGTAGCTC+TGG 0.523021 5.2:-60584765 MS.gene50200:intron
AGAGAAGGAATAAGCGGTTG+TGG 0.527869 5.2:+60587705 None:intergenic
ATCTTATTCCTACAGGCAAA+CGG 0.529325 5.2:+60584184 None:intergenic
GATCTTATAACGGCTGCTAT+GGG 0.532654 5.2:-60585004 MS.gene50200:CDS
TGTAATCACCTCTCCAGCAC+TGG 0.535327 5.2:+60587657 None:intergenic
GTGCTTGGAAGTTCTGGAAG+AGG 0.536425 5.2:-60585174 MS.gene50200:CDS
GCTCTAGAGAAATATGGTGT+TGG 0.536576 5.2:-60586688 MS.gene50200:CDS
TGAGAAGTTAGATCTTATAA+CGG 0.537678 5.2:-60585014 MS.gene50200:CDS
TGCTATTGAACCACCGACCA+TGG 0.539561 5.2:+60588979 None:intergenic
CAGGGATGAAGGAGTCCACT+GGG 0.540737 5.2:-60585947 MS.gene50200:CDS
ATTGCAGCGCTTGCAAGATA+CGG 0.544886 5.2:+60584717 None:intergenic
GGTATAGACAATCACCCAAA+AGG 0.548264 5.2:+60588928 None:intergenic
ATATCACATTCTTGGTTGAG+GGG 0.551510 5.2:+60588552 None:intergenic
TGTTGTTGAAGCTCTCTACC+AGG 0.553954 5.2:-60585791 MS.gene50200:intron
TAGACAATCACCCAAAAGGC+AGG 0.558082 5.2:+60588932 None:intergenic
TACCATTAACTATGGTATGT+GGG 0.558768 5.2:+60586872 None:intergenic
ACAAACAATCTTATTCCTAC+AGG 0.559718 5.2:+60584177 None:intergenic
ACAGGGATGAAGGAGTCCAC+TGG 0.559845 5.2:-60585948 MS.gene50200:intron
CAATTGTTCCATAAAACCCA+CGG 0.560580 5.2:+60586653 None:intergenic
GGTTGAGGGGCTATAGCCTA+TGG 0.562770 5.2:+60588565 None:intergenic
TGACTCGCAATCGTGAAGCC+TGG 0.563804 5.2:+60584428 None:intergenic
TTGGGTGATTGTCTATACCA+AGG 0.564840 5.2:-60588924 MS.gene50200:CDS
TGCATATCTTTATCAAGAGA+AGG 0.565672 5.2:+60587690 None:intergenic
AACATTGCTGTGTTATGGAA+AGG 0.565817 5.2:-60584639 MS.gene50200:intron
TGCAAGAGTTATAGATCACC+AGG 0.568076 5.2:-60584942 MS.gene50200:intron
GCAGGGTTGTTGGAAATACC+AGG 0.569040 5.2:-60584446 MS.gene50200:intron
TTGGTTCATGTGGTCCCCGT+GGG 0.570350 5.2:-60586669 MS.gene50200:CDS
CGCTGTCCTTCCATGGTCGG+TGG 0.570920 5.2:-60588989 None:intergenic
TAAGATTGTTTGTTTCTGCA+GGG 0.573662 5.2:-60584167 MS.gene50200:CDS
CTATAGCCTATGGCGGCTAG+GGG 0.576546 5.2:+60588575 None:intergenic
TTTGAGATTAAAGAAGTCAA+CGG 0.584081 5.2:-60584384 MS.gene50200:CDS
AATTTAATGATATCATCTAA+GGG 0.585413 5.2:+60585249 None:intergenic
AGCAGGAATAGCACTGAACA+TGG 0.585997 5.2:+60586479 None:intergenic
CATGCATTGGCCACAGAAGG+AGG 0.588651 5.2:-60584980 MS.gene50200:CDS
AATCGCTGTCCTTCCATGGT+CGG 0.589671 5.2:-60588992 None:intergenic
AATTGTTCCATAAAACCCAC+GGG 0.590052 5.2:+60586654 None:intergenic
GGACATGCATTGGCCACAGA+AGG 0.590206 5.2:-60584983 MS.gene50200:CDS
GTCCACTGGGGAATACAGAA+TGG 0.593062 5.2:-60585934 MS.gene50200:CDS
ATGAACCACCAGTGCTGGAG+AGG 0.602723 5.2:-60587665 MS.gene50200:intron
ACAGAAGGAGGATTCTGCAC+CGG 0.604655 5.2:-60584968 MS.gene50200:CDS
GGTGCAGAATCCTCCTTCTG+TGG 0.610091 5.2:+60584970 None:intergenic
GACAAGTGCCGTTTGCCTGT+AGG 0.612786 5.2:-60584192 MS.gene50200:CDS
AATCACCTCTCCAGCACTGG+TGG 0.628042 5.2:+60587660 None:intergenic
AAATATGGTGTTGGTTCATG+TGG 0.629485 5.2:-60586679 MS.gene50200:CDS
GTTGGTTCATGTGGTCCCCG+TGG 0.636228 5.2:-60586670 MS.gene50200:CDS
TTATCAAGAGAAGGAATAAG+CGG 0.647888 5.2:+60587699 None:intergenic
TTCAGAGTCTGATCTTCACA+AGG 0.660377 5.2:-60584142 MS.gene50200:CDS
GCAGCGCTTGCAAGATACGG+AGG 0.673580 5.2:+60584720 None:intergenic
AAGCCCAAGATAGTTTGCTG+AGG 0.686766 5.2:+60586831 None:intergenic
GGCCATTCTGTATTCCCCAG+TGG 0.696448 5.2:+60585932 None:intergenic
AGGAATAGCACTGAACATGG+TGG 0.728012 5.2:+60586482 None:intergenic
TGAGGGGCTATAGCCTATGG+CGG 0.749476 5.2:+60588568 None:intergenic
AGGGATGAAGGAGTCCACTG+GGG 0.777778 5.2:-60585946 MS.gene50200:CDS
ATTGTTCCATAAAACCCACG+GGG 0.815269 5.2:+60586655 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTAGAAACTAAA+GGG + chr5.2:60585763-60585782 None:intergenic 10.0%
!! ATTCATATTTAACAATAAAA+TGG - chr5.2:60584965-60584984 MS.gene50200:CDS 10.0%
!! TAGATAATTATTGAAATAAT+TGG + chr5.2:60586832-60586851 None:intergenic 10.0%
!! TCCAAATAAATAAATTAAAA+AGG - chr5.2:60588552-60588571 MS.gene50200:intron 10.0%
!! TTATATTTACTTTATATTGT+AGG - chr5.2:60586353-60586372 MS.gene50200:intron 10.0%
!!! ATAATTTTGTATTTTTTAAC+AGG - chr5.2:60587112-60587131 MS.gene50200:intron 10.0%
!!! TAATTTTGTATTTTTTAACA+GGG - chr5.2:60587113-60587132 MS.gene50200:intron 10.0%
!!! TATTTTAAAAAATGGAAAAT+TGG + chr5.2:60586151-60586170 None:intergenic 10.0%
!! AACTATTAAATTACAATGTT+AGG - chr5.2:60584558-60584577 MS.gene50200:intron 15.0%
!! AATTTAATGATATCATCTAA+GGG + chr5.2:60587832-60587851 None:intergenic 15.0%
!! ACTATTAAATTACAATGTTA+GGG - chr5.2:60584559-60584578 MS.gene50200:intron 15.0%
!! AGAAATAGAATTTATTGATA+TGG + chr5.2:60586308-60586327 None:intergenic 15.0%
!! ATTGAAGTTAAAAATAAAGA+AGG - chr5.2:60585925-60585944 MS.gene50200:CDS 15.0%
!! GAAAAAAAATTAGAAACTAA+AGG + chr5.2:60585764-60585783 None:intergenic 15.0%
!! GAAATAGAATTTATTGATAT+GGG + chr5.2:60586307-60586326 None:intergenic 15.0%
!! TAAAATGATAAAAATAGATG+AGG + chr5.2:60585466-60585485 None:intergenic 15.0%
!! TTAAATTGAAGGAAAAATAT+CGG - chr5.2:60587845-60587864 MS.gene50200:intron 15.0%
!! TTCAACTTTGTTAATATATT+GGG + chr5.2:60588415-60588434 None:intergenic 15.0%
!! TTTAATCTCAAATAAACAAT+TGG + chr5.2:60588686-60588705 None:intergenic 15.0%
!!! AATATTAAAGTTTGTTTTTG+AGG - chr5.2:60586457-60586476 MS.gene50200:CDS 15.0%
!!! ACAATCAGTATTTTAAAAAA+TGG + chr5.2:60586159-60586178 None:intergenic 15.0%
!!! AGAATTCTGAAAATTATAAA+AGG + chr5.2:60587797-60587816 None:intergenic 15.0%
!!! GCCTTTTTAATTTATTTATT+TGG + chr5.2:60588556-60588575 None:intergenic 15.0%
!!! GTATATATTATAGGTTTTTT+AGG + chr5.2:60584252-60584271 None:intergenic 15.0%
!!! TAAATTCATGAACTTTTTTT+AGG - chr5.2:60585605-60585624 MS.gene50200:intron 15.0%
!!! TCTTTACTTTTTTATTACAA+TGG - chr5.2:60587015-60587034 MS.gene50200:intron 15.0%
!!! TTTTATAATTTTCAGAATTC+TGG - chr5.2:60587796-60587815 MS.gene50200:intron 15.0%
!!! TTTTTGGTTATAAATTAATG+TGG - chr5.2:60585239-60585258 MS.gene50200:CDS 15.0%
!! AACTTATATCATAGCATATA+GGG - chr5.2:60585888-60585907 MS.gene50200:CDS 20.0%
!! AGAAAACATAAGATTATTTC+AGG + chr5.2:60585546-60585565 None:intergenic 20.0%
!! AGATGATATCATTAAATTGA+AGG - chr5.2:60587834-60587853 MS.gene50200:intron 20.0%
!! ATTCAATTCTATACTCTTAT+GGG - chr5.2:60586569-60586588 MS.gene50200:intron 20.0%
!! ATTTAACAATAAAATGGCAT+AGG - chr5.2:60584971-60584990 MS.gene50200:CDS 20.0%
!! CAATTTAATGATATCATCTA+AGG + chr5.2:60587833-60587852 None:intergenic 20.0%
!! CTTAAAAATATAATACCATC+AGG - chr5.2:60584271-60584290 MS.gene50200:intron 20.0%
!! CTTCAACTTTGTTAATATAT+TGG + chr5.2:60588416-60588435 None:intergenic 20.0%
!! GAAAACATAAGATTATTTCA+GGG + chr5.2:60585545-60585564 None:intergenic 20.0%
!! GAAATATCAGTTATATAAAG+TGG + chr5.2:60587071-60587090 None:intergenic 20.0%
!! GACAAAAAATTGAACAAAAA+TGG + chr5.2:60586685-60586704 None:intergenic 20.0%
!! GTTGTAAAATTCAAGAATTT+AGG - chr5.2:60584176-60584195 MS.gene50200:CDS 20.0%
!! GTTTGATCTTATCTATTATT+GGG + chr5.2:60584383-60584402 None:intergenic 20.0%
!! TAAAAAAGGAGATATAATTG+TGG - chr5.2:60586627-60586646 MS.gene50200:intron 20.0%
!! TAAAATCAAATTTGTAGTTG+AGG + chr5.2:60585050-60585069 None:intergenic 20.0%
!! TAAAGATAGTAATAAAACCA+GGG + chr5.2:60587001-60587020 None:intergenic 20.0%
!! TAACTTATATCATAGCATAT+AGG - chr5.2:60585887-60585906 MS.gene50200:CDS 20.0%
!! TAGAAATTTGAATGCATTAA+CGG + chr5.2:60588010-60588029 None:intergenic 20.0%
!! TATGATATAAGTTAACAAGT+CGG + chr5.2:60585881-60585900 None:intergenic 20.0%
!! TGTTTGATCTTATCTATTAT+TGG + chr5.2:60584384-60584403 None:intergenic 20.0%
!! TTTAAAAAATGGAAAATTGG+TGG + chr5.2:60586148-60586167 None:intergenic 20.0%
!!! AACAATTTTCCTATTTTCAT+TGG + chr5.2:60585125-60585144 None:intergenic 20.0%
!!! CAATGTTTATTTCTTACTTT+CGG - chr5.2:60588780-60588799 MS.gene50200:intron 20.0%
!!! TACTTTGATTTATTATGAAG+TGG + chr5.2:60584317-60584336 None:intergenic 20.0%
!!! TCTTGGTATTTTACTATTTT+AGG - chr5.2:60584590-60584609 MS.gene50200:intron 20.0%
!!! TCTTTTTTATATCACATTCT+TGG + chr5.2:60584537-60584556 None:intergenic 20.0%
! AAAGATAGTAATAAAACCAG+GGG + chr5.2:60587000-60587019 None:intergenic 25.0%
! AACAAATGTTATCAATCTCT+TGG - chr5.2:60584400-60584419 MS.gene50200:CDS 25.0%
! AACTTCTTTACCATTAACTA+TGG + chr5.2:60586217-60586236 None:intergenic 25.0%
! ACCACATATATAGAACTATT+TGG - chr5.2:60586739-60586758 MS.gene50200:intron 25.0%
! ACTTCGTTTATATCTTCAAT+TGG + chr5.2:60587575-60587594 None:intergenic 25.0%
! ATATAACTGATATTTCAAGC+AGG - chr5.2:60587075-60587094 MS.gene50200:intron 25.0%
! ATATTAGATTGTGATGATTG+AGG - chr5.2:60585951-60585970 MS.gene50200:intron 25.0%
! ATTCTTAATTTCAGTACACT+TGG + chr5.2:60588209-60588228 None:intergenic 25.0%
! CATATATAGAACTATTTGGA+TGG - chr5.2:60586743-60586762 MS.gene50200:intron 25.0%
! GATTCAATTCTATACTCTTA+TGG - chr5.2:60586568-60586587 MS.gene50200:intron 25.0%
! GTAAAGATAGTAATAAAACC+AGG + chr5.2:60587002-60587021 None:intergenic 25.0%
! GTATTGTAGTGTCTATTATT+TGG - chr5.2:60588503-60588522 MS.gene50200:intron 25.0%
! GTTATATGAACTACTATTTC+TGG - chr5.2:60587523-60587542 MS.gene50200:intron 25.0%
! TATTAGATTGTGATGATTGA+GGG - chr5.2:60585952-60585971 MS.gene50200:intron 25.0%
! TGAGAAGTTAGATCTTATAA+CGG - chr5.2:60588064-60588083 MS.gene50200:intron 25.0%
!! AACTTTTATATGACATGCAT+TGG - chr5.2:60588604-60588623 MS.gene50200:CDS 25.0%
!! AATAAAAATATAGAAGCGCA+CGG + chr5.2:60587332-60587351 None:intergenic 25.0%
!! AATATAACGCCTCAAATTTT+TGG + chr5.2:60587268-60587287 None:intergenic 25.0%
!! AGGTAATCTTTTACACATTT+AGG + chr5.2:60584232-60584251 None:intergenic 25.0%
!! ATATATTGGGATTTTCATCA+AGG + chr5.2:60588402-60588421 None:intergenic 25.0%
!! ATTCTTGAATTTTACAACCT+TGG + chr5.2:60584174-60584193 None:intergenic 25.0%
!! ATTTTCATGATCAAAACAGT+TGG - chr5.2:60585203-60585222 MS.gene50200:CDS 25.0%
!! GCAAGAATAGCAAAATTTTT+AGG - chr5.2:60586538-60586557 MS.gene50200:CDS 25.0%
!! GGTAATCTTTTACACATTTA+GGG + chr5.2:60584231-60584250 None:intergenic 25.0%
!! GTAATCTTTTACACATTTAG+GGG + chr5.2:60584230-60584249 None:intergenic 25.0%
!! TAAGAGTATAGAATTGAATC+AGG + chr5.2:60586568-60586587 None:intergenic 25.0%
!! TCCAAATAGTTCTATATATG+TGG + chr5.2:60586743-60586762 None:intergenic 25.0%
!! TTTGAGATTAAAGAAGTCAA+CGG - chr5.2:60588694-60588713 MS.gene50200:intron 25.0%
!! TTTTCATTCATAATTTCTGC+AGG - chr5.2:60585321-60585340 MS.gene50200:intron 25.0%
!!! AACTGTTTTGATCATGAAAA+TGG + chr5.2:60585204-60585223 None:intergenic 25.0%
!!! ACAATTTTAATGTTTCTTCC+GGG + chr5.2:60586803-60586822 None:intergenic 25.0%
!!! ACTGTTTTGATCATGAAAAT+GGG + chr5.2:60585203-60585222 None:intergenic 25.0%
!!! ATATCGGTTTCGTATTTTAT+TGG - chr5.2:60587861-60587880 MS.gene50200:intron 25.0%
!!! CACAATTTTAATGTTTCTTC+CGG + chr5.2:60586804-60586823 None:intergenic 25.0%
!!! TACTGATTCATAAACAAACT+TGG - chr5.2:60588179-60588198 MS.gene50200:intron 25.0%
AAACACAAATTGTGAGCATA+TGG - chr5.2:60587600-60587619 MS.gene50200:intron 30.0%
AAGTTCTCATGTGATTTCAT+AGG - chr5.2:60585821-60585840 MS.gene50200:CDS 30.0%
AATCACGTAAATCAGACATT+AGG - chr5.2:60586050-60586069 MS.gene50200:intron 30.0%
ACAAACAATCTTATTCCTAC+AGG + chr5.2:60588904-60588923 None:intergenic 30.0%
ACATAAGATTATTTCAGGGA+AGG + chr5.2:60585541-60585560 None:intergenic 30.0%
ACTTATTGTTCTGTATTCAC+AGG - chr5.2:60588813-60588832 MS.gene50200:intron 30.0%
AGAATGTACAAGAACTAACA+TGG + chr5.2:60585283-60585302 None:intergenic 30.0%
AGTTCTATATATGTGGTGTA+TGG + chr5.2:60586736-60586755 None:intergenic 30.0%
AGTTCTTGTACATTCTTATC+TGG - chr5.2:60585287-60585306 MS.gene50200:intron 30.0%
ATGTACCAAAAATCTCTGTT+TGG - chr5.2:60587954-60587973 MS.gene50200:intron 30.0%
ATTCAAATTTCTACTGCTGT+TGG - chr5.2:60588017-60588036 MS.gene50200:intron 30.0%
CCTTTGACATCTCAAAAAAA+TGG + chr5.2:60585099-60585118 None:intergenic 30.0%
CTTCTATATTGTGTTTCGAA+TGG - chr5.2:60587438-60587457 MS.gene50200:intron 30.0%
GAAAGAAGATTCTGTATTTG+TGG - chr5.2:60588840-60588859 MS.gene50200:intron 30.0%
GGAAAATGTATGACATACAA+GGG + chr5.2:60585860-60585879 None:intergenic 30.0%
GTCATCAAAAGTTACTTGTA+AGG - chr5.2:60586274-60586293 MS.gene50200:intron 30.0%
GTTCTTGTACATTCTTATCT+GGG - chr5.2:60585288-60585307 MS.gene50200:intron 30.0%
GTTGTAATTGATCAGTGAAA+TGG + chr5.2:60584685-60584704 None:intergenic 30.0%
TAATATAGACAAGATCTACC+TGG + chr5.2:60587308-60587327 None:intergenic 30.0%
TACCATTAACTATGGTATGT+GGG + chr5.2:60586209-60586228 None:intergenic 30.0%
TATATCACATTCTTGGTTGA+GGG + chr5.2:60584530-60584549 None:intergenic 30.0%
TGATGAGTTATGTGATGAAT+GGG - chr5.2:60585348-60585367 MS.gene50200:intron 30.0%
TGCATATCTTTATCAAGAGA+AGG + chr5.2:60585391-60585410 None:intergenic 30.0%
TGTACCAAAAATCTCTGTTT+GGG - chr5.2:60587955-60587974 MS.gene50200:intron 30.0%
TGTCTGATGACATTTATGTT+GGG - chr5.2:60586701-60586720 MS.gene50200:CDS 30.0%
TTACCATTAACTATGGTATG+TGG + chr5.2:60586210-60586229 None:intergenic 30.0%
TTATATCACATTCTTGGTTG+AGG + chr5.2:60584531-60584550 None:intergenic 30.0%
TTATCAAGAGAAGGAATAAG+CGG + chr5.2:60585382-60585401 None:intergenic 30.0%
TTGAGATTAAAGAAGTCAAC+GGG - chr5.2:60588695-60588714 MS.gene50200:intron 30.0%
TTGATGAGTTATGTGATGAA+TGG - chr5.2:60585347-60585366 MS.gene50200:intron 30.0%
TTGTCTGATGACATTTATGT+TGG - chr5.2:60586700-60586719 MS.gene50200:CDS 30.0%
! AAATAAACAATTGGTGACTC+TGG + chr5.2:60588677-60588696 None:intergenic 30.0%
! ACACTAATTTTCTTTATCGC+AGG + chr5.2:60585794-60585813 None:intergenic 30.0%
! ATTACAATGTTAGGGCTTTT+TGG - chr5.2:60584567-60584586 MS.gene50200:intron 30.0%
! ATTCCTGCTTTCTCTAAAAA+AGG - chr5.2:60586613-60586632 MS.gene50200:intron 30.0%
! GGTGATTACATTTTATCTTG+TGG - chr5.2:60585434-60585453 MS.gene50200:intron 30.0%
! GTTTTATGGAACAATTGGTA+AGG - chr5.2:60586431-60586450 MS.gene50200:intron 30.0%
! TCTTTGTTTGTGATGCATTT+AGG - chr5.2:60584122-60584141 MS.gene50200:CDS 30.0%
!! ATAAGATTGTTTGTTTCTGC+AGG - chr5.2:60588910-60588929 MS.gene50200:CDS 30.0%
!! ATATGGTGTTACTATTAGAC+TGG - chr5.2:60587617-60587636 MS.gene50200:intron 30.0%
!! CAATTTTAATGTTTCTTCCG+GGG + chr5.2:60586802-60586821 None:intergenic 30.0%
!! GTATTTTAAGCACAATGACA+TGG - chr5.2:60587194-60587213 MS.gene50200:intron 30.0%
!! TAAGATTGTTTGTTTCTGCA+GGG - chr5.2:60588911-60588930 MS.gene50200:CDS 30.0%
!! TTGAATTTTTGTTGTCCTGA+TGG + chr5.2:60584289-60584308 None:intergenic 30.0%
!!! CCATTTTTTTGAGATGTCAA+AGG - chr5.2:60585096-60585115 MS.gene50200:intron 30.0%
!!! GTATTTTTTAACAGGGATGA+AGG - chr5.2:60587120-60587139 MS.gene50200:intron 30.0%
!!! TAGTTCACTAGAAGTACTTT+TGG - chr5.2:60585984-60586003 MS.gene50200:intron 30.0%
!!! TATTTTTAAGGCGAAGTGAT+TGG - chr5.2:60588230-60588249 MS.gene50200:intron 30.0%
!!! TGGTTGTCTTCTAACTTTTT+TGG - chr5.2:60585223-60585242 MS.gene50200:CDS 30.0%
AAAAATCTCTGTTTGGGTGT+GGG - chr5.2:60587961-60587980 MS.gene50200:intron 35.0%
AAAATACACCAGAACAGCAT+TGG - chr5.2:60584625-60584644 MS.gene50200:intron 35.0%
AAATACACCAGAACAGCATT+GGG - chr5.2:60584626-60584645 MS.gene50200:intron 35.0%
AACAGCAAGATAGCAAATAG+AGG + chr5.2:60584779-60584798 None:intergenic 35.0%
AACATTGCTGTGTTATGGAA+AGG - chr5.2:60588439-60588458 MS.gene50200:intron 35.0%
AATTGTTCCATAAAACCCAC+GGG + chr5.2:60586427-60586446 None:intergenic 35.0%
ACAAGCACACCAAAAATTTG+AGG - chr5.2:60587256-60587275 MS.gene50200:intron 35.0%
ACAGCAAGATAGCAAATAGA+GGG + chr5.2:60584778-60584797 None:intergenic 35.0%
AGAACAACATTGCTGTGTTA+TGG - chr5.2:60588434-60588453 MS.gene50200:intron 35.0%
AGAACTAACATGGAACACTA+TGG + chr5.2:60585273-60585292 None:intergenic 35.0%
AGGCATCTGAATCATTGAAA+AGG - chr5.2:60588956-60588975 MS.gene50200:CDS 35.0%
AGTCTCTTAACACTTCTTTC+TGG + chr5.2:60584352-60584371 None:intergenic 35.0%
ATATCACATTCTTGGTTGAG+GGG + chr5.2:60584529-60584548 None:intergenic 35.0%
ATCTACCACTGTTATCAATC+CGG + chr5.2:60584840-60584859 None:intergenic 35.0%
ATCTATAACTCTTGCACTTC+CGG + chr5.2:60588132-60588151 None:intergenic 35.0%
ATCTTATTCCTACAGGCAAA+CGG + chr5.2:60588897-60588916 None:intergenic 35.0%
CAATTGTTCCATAAAACCCA+CGG + chr5.2:60586428-60586447 None:intergenic 35.0%
CCATAGTTATTGCAAGGTTA+AGG - chr5.2:60585674-60585693 MS.gene50200:intron 35.0%
CCTTAACCTTGCAATAACTA+TGG + chr5.2:60585677-60585696 None:intergenic 35.0%
CGGAAAATGTATGACATACA+AGG + chr5.2:60585861-60585880 None:intergenic 35.0%
GAAAACCTACCAATATGCTA+GGG + chr5.2:60585636-60585655 None:intergenic 35.0%
GAATGCATTAACGGTAAATC+TGG + chr5.2:60588001-60588020 None:intergenic 35.0%
GGCATCTGAATCATTGAAAA+GGG - chr5.2:60588957-60588976 MS.gene50200:CDS 35.0%
GTTATCAATCTCTTGGATAG+TGG - chr5.2:60584407-60584426 MS.gene50200:CDS 35.0%
GTTGAAAACACAGACATTAG+CGG + chr5.2:60588291-60588310 None:intergenic 35.0%
TATCAATCCGGAATAGAAGA+CGG + chr5.2:60584828-60584847 None:intergenic 35.0%
TCCATTTAAGAAAGTAGCAG+CGG + chr5.2:60588480-60588499 None:intergenic 35.0%
TGATAACAGTGGTAGATAGT+GGG - chr5.2:60584843-60584862 MS.gene50200:intron 35.0%
TTAAAGAACGACATTGCGAT+AGG + chr5.2:60587645-60587664 None:intergenic 35.0%
TTTCCTCAGCAAACTATCTT+GGG - chr5.2:60586244-60586263 MS.gene50200:intron 35.0%
! ATTCTTATCTGGGATTCATC+AGG - chr5.2:60585298-60585317 MS.gene50200:intron 35.0%
! CAGTGCTTCTAGAAAGATAA+AGG + chr5.2:60587170-60587189 None:intergenic 35.0%
! CTATTTCTTGAACACTGCTT+TGG - chr5.2:60586320-60586339 MS.gene50200:intron 35.0%
! TTGATAACAGTGGTAGATAG+TGG - chr5.2:60584842-60584861 MS.gene50200:intron 35.0%
! TTTCTTACTTTCGGTTTTGC+TGG - chr5.2:60588789-60588808 MS.gene50200:intron 35.0%
! TTTTCCTCAGCAAACTATCT+TGG - chr5.2:60586243-60586262 MS.gene50200:intron 35.0%
!! AAATATGGTGTTGGTTCATG+TGG - chr5.2:60586399-60586418 MS.gene50200:intron 35.0%
!! ACTTCTGCTCTAGAGAAATA+TGG - chr5.2:60586384-60586403 MS.gene50200:intron 35.0%
!! CAAAGGTGTCCAATGAAAAT+AGG - chr5.2:60585113-60585132 MS.gene50200:intron 35.0%
!! CTATTTCTGGTGAGATAGTA+TGG - chr5.2:60587536-60587555 MS.gene50200:intron 35.0%
!! GGCATTCATCTACTACTTTT+TGG + chr5.2:60585168-60585187 None:intergenic 35.0%
!! GTTTTGATCATGAAAATGGG+TGG + chr5.2:60585200-60585219 None:intergenic 35.0%
!!! CAGAGATTTTTGGTACATAC+TGG + chr5.2:60587952-60587971 None:intergenic 35.0%
!!! GGTTACTGCATTAGTTTTGT+AGG - chr5.2:60588978-60588997 MS.gene50200:CDS 35.0%
!!! TCTCCTTTTTTAGAGAAAGC+AGG + chr5.2:60586619-60586638 None:intergenic 35.0%
!!! TCTTGCTGTTGCATTTTTTG+TGG - chr5.2:60584789-60584808 MS.gene50200:intron 35.0%
!!! TGGATGGTTTTATTCAGATC+CGG - chr5.2:60586759-60586778 MS.gene50200:intron 35.0%
AAAACACAGACATTAGCGGA+GGG + chr5.2:60588287-60588306 None:intergenic 40.0%
AAGTGTTAAGAGACTCACAG+TGG - chr5.2:60584357-60584376 MS.gene50200:CDS 40.0%
AATTTCTTATGCAGTGCTGC+TGG - chr5.2:60586183-60586202 MS.gene50200:intron 40.0%
ACAAATGACACTACCATACC+TGG + chr5.2:60588157-60588176 None:intergenic 40.0%
ACTATGGCTACCATGTAAGA+AGG + chr5.2:60585661-60585680 None:intergenic 40.0%
ACTTGTCAACTTCACTGCTA+TGG - chr5.2:60585566-60585585 MS.gene50200:intron 40.0%
AGATCTTATAACGGCTGCTA+TGG - chr5.2:60588073-60588092 MS.gene50200:intron 40.0%
ATCAATCCGGAATAGAAGAC+GGG + chr5.2:60584827-60584846 None:intergenic 40.0%
ATTGTTCCATAAAACCCACG+GGG + chr5.2:60586426-60586445 None:intergenic 40.0%
CAAAAATCTCTGTTTGGGTG+TGG - chr5.2:60587960-60587979 MS.gene50200:intron 40.0%
CACAGCAATTCTTACACGTT+CGG + chr5.2:60588759-60588778 None:intergenic 40.0%
CACAGTCAAGATGTACATCT+GGG + chr5.2:60586516-60586535 None:intergenic 40.0%
CACTGCTATCTAATATGCCA+TGG + chr5.2:60584442-60584461 None:intergenic 40.0%
CTATCTAATATGCCATGGTG+CGG + chr5.2:60584437-60584456 None:intergenic 40.0%
GAGTTATAGATCACCAGGTA+TGG - chr5.2:60588141-60588160 MS.gene50200:intron 40.0%
GATAGTAATAAAACCAGGGG+TGG + chr5.2:60586997-60587016 None:intergenic 40.0%
GATCTTATAACGGCTGCTAT+GGG - chr5.2:60588074-60588093 MS.gene50200:intron 40.0%
GATTACAGTCGAAGTGTAAG+TGG + chr5.2:60584657-60584676 None:intergenic 40.0%
GCAAACTATCTTGGGCTTAT+AGG - chr5.2:60586252-60586271 MS.gene50200:intron 40.0%
GCATTAACGGTAAATCTGGT+GGG + chr5.2:60587997-60588016 None:intergenic 40.0%
GGAAAACCTACCAATATGCT+AGG + chr5.2:60585637-60585656 None:intergenic 40.0%
GGTATAGACAATCACCCAAA+AGG + chr5.2:60584153-60584172 None:intergenic 40.0%
GGTATCAAAAATCTTAGGGC+CGG + chr5.2:60586781-60586800 None:intergenic 40.0%
TAGGATTACAGTTTGCACTC+TGG - chr5.2:60586069-60586088 MS.gene50200:intron 40.0%
TCACAGTCAAGATGTACATC+TGG + chr5.2:60586517-60586536 None:intergenic 40.0%
TGCAAGAGTTATAGATCACC+AGG - chr5.2:60588136-60588155 MS.gene50200:intron 40.0%
TGCATTAACGGTAAATCTGG+TGG + chr5.2:60587998-60588017 None:intergenic 40.0%
TGGTAGCCATAGTTATTGCA+AGG - chr5.2:60585668-60585687 MS.gene50200:intron 40.0%
TTCAGAGTCTGATCTTCACA+AGG - chr5.2:60588936-60588955 MS.gene50200:CDS 40.0%
TTGCTGTGTTATGGAAAGGT+AGG - chr5.2:60588443-60588462 MS.gene50200:intron 40.0%
TTGGATGAGAGCAACTCATT+TGG - chr5.2:60587880-60587899 MS.gene50200:intron 40.0%
TTGGGTGATTGTCTATACCA+AGG - chr5.2:60584154-60584173 MS.gene50200:CDS 40.0%
! AGGTTTTCCACCTTCTTACA+TGG - chr5.2:60585648-60585667 MS.gene50200:intron 40.0%
! CACACCCAAACAGAGATTTT+TGG + chr5.2:60587962-60587981 None:intergenic 40.0%
! CCCTAAGATTTTTGATACCC+CGG - chr5.2:60586782-60586801 MS.gene50200:intron 40.0%
! CCGGGGTATCAAAAATCTTA+GGG + chr5.2:60586785-60586804 None:intergenic 40.0%
! CCTAGGGCAACATTTTCTTA+GGG + chr5.2:60586946-60586965 None:intergenic 40.0%
! CTAGGGCAACATTTTCTTAG+GGG + chr5.2:60586945-60586964 None:intergenic 40.0%
! CTATTCCGGATTGATAACAG+TGG - chr5.2:60584832-60584851 MS.gene50200:intron 40.0%
! TCCGGGGTATCAAAAATCTT+AGG + chr5.2:60586786-60586805 None:intergenic 40.0%
!! ACCGCTGCTACTTTCTTAAA+TGG - chr5.2:60588476-60588495 MS.gene50200:intron 40.0%
!! ATGTTAGGGCTTTTTGGTCT+TGG - chr5.2:60584573-60584592 MS.gene50200:intron 40.0%
!! CAATATTTTCAAGCAGGCGT+AGG + chr5.2:60588736-60588755 None:intergenic 40.0%
!! CGTGGGTTTTATGGAACAAT+TGG - chr5.2:60586426-60586445 MS.gene50200:intron 40.0%
!! GCTCTAGAGAAATATGGTGT+TGG - chr5.2:60586390-60586409 MS.gene50200:intron 40.0%
!! GTTCGGCAATATTTTCAAGC+AGG + chr5.2:60588742-60588761 None:intergenic 40.0%
AGAGAAGGAATAAGCGGTTG+TGG + chr5.2:60585376-60585395 None:intergenic 45.0%
AGAGGTCTCACTGAACACTA+TGG - chr5.2:60587922-60587941 MS.gene50200:intron 45.0%
ATGAGCCCTAGCATATTGGT+AGG - chr5.2:60585628-60585647 MS.gene50200:intron 45.0%
ATGGCTACCATGTAAGAAGG+TGG + chr5.2:60585658-60585677 None:intergenic 45.0%
ATTGCAGCGCTTGCAAGATA+CGG + chr5.2:60588364-60588383 None:intergenic 45.0%
CATCAAGTATGCAGTCGACA+TGG + chr5.2:60585025-60585044 None:intergenic 45.0%
CCCTAAGAAAATGTTGCCCT+AGG - chr5.2:60586943-60586962 MS.gene50200:intron 45.0%
GAAAACACAGACATTAGCGG+AGG + chr5.2:60588288-60588307 None:intergenic 45.0%
GAAAATGGGTGGACAGACAA+AGG + chr5.2:60585189-60585208 None:intergenic 45.0%
GGCCCACATACCATAGTTAA+TGG - chr5.2:60586204-60586223 MS.gene50200:intron 45.0%
TACAGTCGAAGTGTAAGTGG+AGG + chr5.2:60584654-60584673 None:intergenic 45.0%
TAGACAATCACCCAAAAGGC+AGG + chr5.2:60584149-60584168 None:intergenic 45.0%
TAGGATGAGCCCTAGCATAT+TGG - chr5.2:60585624-60585643 MS.gene50200:intron 45.0%
TGGTGAACAAGCAGCTCTAT+GGG + chr5.2:60585148-60585167 None:intergenic 45.0%
TGTTGTTGAAGCTCTCTACC+AGG - chr5.2:60587287-60587306 MS.gene50200:intron 45.0%
TTACAGCGATTGAGTAGCTC+TGG - chr5.2:60588313-60588332 MS.gene50200:intron 45.0%
TTGGTGAACAAGCAGCTCTA+TGG + chr5.2:60585149-60585168 None:intergenic 45.0%
TTGTGATGATTGAGGGAGAC+TGG - chr5.2:60585959-60585978 MS.gene50200:intron 45.0%
TTTAGGGGTTGAGTCTACAG+AGG + chr5.2:60584215-60584234 None:intergenic 45.0%
! AACACTATTGCTGCTTGCTC+TGG - chr5.2:60587665-60587684 MS.gene50200:intron 45.0%
! AGCAGGAATAGCACTGAACA+TGG + chr5.2:60586602-60586621 None:intergenic 45.0%
! AGGAATAGCACTGAACATGG+TGG + chr5.2:60586599-60586618 None:intergenic 45.0%
! GCCTAGGGCAACATTTTCTT+AGG + chr5.2:60586947-60586966 None:intergenic 45.0%
! TTTGGTGTGCTTGGAAGTTC+TGG - chr5.2:60587898-60587917 MS.gene50200:intron 45.0%
!! AAGCCCAAGATAGTTTGCTG+AGG + chr5.2:60586250-60586269 None:intergenic 45.0%
!! AGCAACTCATTTGGTGTGCT+TGG - chr5.2:60587889-60587908 MS.gene50200:intron 45.0%
!! GCATTTAGGACCTGCCTTTT+GGG - chr5.2:60584136-60584155 MS.gene50200:CDS 45.0%
!! TGCATTTAGGACCTGCCTTT+TGG - chr5.2:60584135-60584154 MS.gene50200:CDS 45.0%
!! ATTAAGTAAAAATAATAATT+TGG - chr5.2:60586917-60586936 MS.gene50200:intron 5.0%
!!! AAATTAAGAATTTATTTTTA+AGG - chr5.2:60588218-60588237 MS.gene50200:intron 5.0%
!!! TATTTTTAAGTATATATTAT+AGG + chr5.2:60584261-60584280 None:intergenic 5.0%
ACAAGACTGCCGTTGTAGTG+GGG + chr5.2:60585724-60585743 None:intergenic 50.0%
ACAGAAGGAGGATTCTGCAC+CGG - chr5.2:60588110-60588129 MS.gene50200:intron 50.0%
ACTACGCCCGTCTTCTATTC+CGG - chr5.2:60584818-60584837 MS.gene50200:intron 50.0%
ATTGGCTACTGCAGGGTTGT+TGG - chr5.2:60588622-60588641 MS.gene50200:CDS 50.0%
CAAGATGTACATCTGGGCAG+AGG + chr5.2:60586510-60586529 None:intergenic 50.0%
CACAAGACTGCCGTTGTAGT+GGG + chr5.2:60585725-60585744 None:intergenic 50.0%
GCAGGGTTGTTGGAAATACC+AGG - chr5.2:60588632-60588651 MS.gene50200:intron 50.0%
GTCCACTGGGGAATACAGAA+TGG - chr5.2:60587144-60587163 MS.gene50200:intron 50.0%
TGATTGTGATCGTGTGCTGC+AGG - chr5.2:60588040-60588059 MS.gene50200:intron 50.0%
TGTAATCACCTCTCCAGCAC+TGG + chr5.2:60585424-60585443 None:intergenic 50.0%
! AAAACCAGGGGTGGCCTTAA+GGG + chr5.2:60586988-60587007 None:intergenic 50.0%
! TAAAACCAGGGGTGGCCTTA+AGG + chr5.2:60586989-60587008 None:intergenic 50.0%
!! GACATGCATTGGCTACTGCA+GGG - chr5.2:60588615-60588634 MS.gene50200:CDS 50.0%
!! GTGCTTGGAAGTTCTGGAAG+AGG - chr5.2:60587904-60587923 MS.gene50200:intron 50.0%
!! TGACATGCATTGGCTACTGC+AGG - chr5.2:60588614-60588633 MS.gene50200:CDS 50.0%
ACAGGGATGAAGGAGTCCAC+TGG - chr5.2:60587130-60587149 MS.gene50200:intron 55.0%
AGGGATGAAGGAGTCCACTG+GGG - chr5.2:60587132-60587151 MS.gene50200:intron 55.0%
CAGGGATGAAGGAGTCCACT+GGG - chr5.2:60587131-60587150 MS.gene50200:intron 55.0%
CTACCTGGACCCCACTACAA+CGG - chr5.2:60585712-60585731 MS.gene50200:intron 55.0%
CTATAGCCTATGGCGGCTAG+GGG + chr5.2:60584506-60584525 None:intergenic 55.0%
CTGTCAGTTCAGACCCTACC+TGG - chr5.2:60585697-60585716 MS.gene50200:intron 55.0%
GCACAAGACTGCCGTTGTAG+TGG + chr5.2:60585726-60585745 None:intergenic 55.0%
GCACTATGAACCACCAGTGC+TGG - chr5.2:60585408-60585427 MS.gene50200:intron 55.0%
GCTATAGCCTATGGCGGCTA+GGG + chr5.2:60584507-60584526 None:intergenic 55.0%
GGAATAGAAGACGGGCGTAG+TGG + chr5.2:60584819-60584838 None:intergenic 55.0%
GGCCATTCTGTATTCCCCAG+TGG + chr5.2:60587149-60587168 None:intergenic 55.0%
GGTGCAGAATCCTCCTTCTG+TGG + chr5.2:60588111-60588130 None:intergenic 55.0%
GGTTGAGGGGCTATAGCCTA+TGG + chr5.2:60584516-60584535 None:intergenic 55.0%
TGACTCGCAATCGTGAAGCC+TGG + chr5.2:60588653-60588672 None:intergenic 55.0%
TGAGGGGCTATAGCCTATGG+CGG + chr5.2:60584513-60584532 None:intergenic 55.0%
TTGGTTCATGTGGTCCCCGT+GGG - chr5.2:60586409-60586428 MS.gene50200:intron 55.0%
! AATCACCTCTCCAGCACTGG+TGG + chr5.2:60585421-60585440 None:intergenic 55.0%
! ACAACGGCAGTCTTGTGCAC+TGG - chr5.2:60585728-60585747 MS.gene50200:intron 55.0%
! ATGAACCACCAGTGCTGGAG+AGG - chr5.2:60585413-60585432 MS.gene50200:intron 55.0%
! GTTGTAGTGGGGTCCAGGTA+GGG + chr5.2:60585713-60585732 None:intergenic 55.0%
! TGTGGTCCCCGTGGGTTTTA+TGG - chr5.2:60586417-60586436 MS.gene50200:intron 55.0%
!! GACAAGTGCCGTTTGCCTGT+AGG - chr5.2:60588886-60588905 MS.gene50200:intron 55.0%
GCAGCGCTTGCAAGATACGG+AGG + chr5.2:60588361-60588380 None:intergenic 60.0%
GGAGGAGCCCAATGCTGTTC+TGG + chr5.2:60584636-60584655 None:intergenic 60.0%
GGCTATAGCCTATGGCGGCT+AGG + chr5.2:60584508-60584527 None:intergenic 60.0%
! CGTTGTAGTGGGGTCCAGGT+AGG + chr5.2:60585714-60585733 None:intergenic 60.0%
! GATAGTGGCTCACCGCACCA+TGG - chr5.2:60584422-60584441 MS.gene50200:CDS 60.0%
! GTTGGTTCATGTGGTCCCCG+TGG - chr5.2:60586408-60586427 MS.gene50200:intron 60.0%
AAGCAGCCCCTAGCCGCCAT+AGG - chr5.2:60584497-60584516 MS.gene50200:intron 65.0%
CTCACCCTTAAGGCCACCCC+TGG - chr5.2:60586981-60587000 MS.gene50200:intron 65.0%
GCCTTAAGGGTGAGCGGGAG+GGG + chr5.2:60586975-60586994 None:intergenic 65.0%
GGCCTTAAGGGTGAGCGGGA+GGG + chr5.2:60586976-60586995 None:intergenic 65.0%
TATGGCGGCTAGGGGCTGCT+TGG + chr5.2:60584498-60584517 None:intergenic 65.0%
TTAAGGGTGAGCGGGAGGGG+CGG + chr5.2:60586972-60586991 None:intergenic 65.0%
! CTGCCGTTGTAGTGGGGTCC+AGG + chr5.2:60585718-60585737 None:intergenic 65.0%
! GGGGTGGCCTTAAGGGTGAG+CGG + chr5.2:60586981-60587000 None:intergenic 65.0%
! GGGTGGCCTTAAGGGTGAGC+GGG + chr5.2:60586980-60586999 None:intergenic 65.0%
! TGGCCTTAAGGGTGAGCGGG+AGG + chr5.2:60586977-60586996 None:intergenic 65.0%
GCCCCTCCCGCTCACCCTTA+AGG - chr5.2:60586971-60586990 MS.gene50200:intron 70.0%
! AGCGGGAGGGGCGGCAGCCT+AGG + chr5.2:60586963-60586982 None:intergenic 80.0%
! GCGGGAGGGGCGGCAGCCTA+GGG + chr5.2:60586962-60586981 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 60584101 60588999 60584101 ID=MS.gene50200
chr5.2 mRNA 60584101 60588999 60584101 ID=MS.gene50200.t1;Parent=MS.gene50200
chr5.2 exon 60588903 60588999 60588903 ID=MS.gene50200.t1.exon1;Parent=MS.gene50200.t1
chr5.2 CDS 60588903 60588999 60588903 ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1
chr5.2 exon 60588559 60588647 60588559 ID=MS.gene50200.t1.exon2;Parent=MS.gene50200.t1
chr5.2 CDS 60588559 60588647 60588559 ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1
chr5.2 exon 60587666 60587757 60587666 ID=MS.gene50200.t1.exon3;Parent=MS.gene50200.t1
chr5.2 CDS 60587666 60587757 60587666 ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1
chr5.2 exon 60586810 60586903 60586810 ID=MS.gene50200.t1.exon4;Parent=MS.gene50200.t1
chr5.2 CDS 60586810 60586903 60586810 ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1
chr5.2 exon 60586653 60586725 60586653 ID=MS.gene50200.t1.exon5;Parent=MS.gene50200.t1
chr5.2 CDS 60586653 60586725 60586653 ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1
chr5.2 exon 60586450 60586582 60586450 ID=MS.gene50200.t1.exon6;Parent=MS.gene50200.t1
chr5.2 CDS 60586450 60586582 60586450 ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1
chr5.2 exon 60585792 60585966 60585792 ID=MS.gene50200.t1.exon7;Parent=MS.gene50200.t1
chr5.2 CDS 60585792 60585966 60585792 ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1
chr5.2 exon 60585149 60585289 60585149 ID=MS.gene50200.t1.exon8;Parent=MS.gene50200.t1
chr5.2 CDS 60585149 60585289 60585149 ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1
chr5.2 exon 60584943 60585038 60584943 ID=MS.gene50200.t1.exon9;Parent=MS.gene50200.t1
chr5.2 CDS 60584943 60585038 60584943 ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1
chr5.2 exon 60584640 60584781 60584640 ID=MS.gene50200.t1.exon10;Parent=MS.gene50200.t1
chr5.2 CDS 60584640 60584781 60584640 ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1
chr5.2 exon 60584337 60584464 60584337 ID=MS.gene50200.t1.exon11;Parent=MS.gene50200.t1
chr5.2 CDS 60584337 60584464 60584337 ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1
chr5.2 exon 60584101 60584265 60584101 ID=MS.gene50200.t1.exon12;Parent=MS.gene50200.t1
chr5.2 CDS 60584101 60584265 60584101 ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1
Gene Sequence

>MS.gene50200

ATGGTCGGTGGTTCAATAGCATCTTTGTTTGTGATGCATTTAGGACCTGCCTTTTGGGTGATTGTCTATACCAAGGTTGTAAAATTCAAGAATTTAGGTAAAGTCATGAAGCCTCTGTAGACTCAACCCCTAAATGTGTAAAAGATTACCTAAAAAACCTATAATATATACTTAAAAATATAATACCATCAGGACAACAAAAATTCAACATTTCCACTTCATAATAAATCAAAGTATCTAGCAAATAACCAGAAAGAAGTGTTAAGAGACTCACAGTGGCCCAATAATAGATAAGATCAAACAAATGTTATCAATCTCTTGGATAGTGGCTCACCGCACCATGGCATATTAGATAGCAGTGTTGTCAATATTGTGCTACAGCAATTTAGCAGAGCCAAGCAGCCCCTAGCCGCCATAGGCTATAGCCCCTCAACCAAGAATGTGATATAAAAAAGAAAACTATTAAATTACAATGTTAGGGCTTTTTGGTCTTGGTATTTTACTATTTTAGGAGCTGTGCAATTAAAATACACCAGAACAGCATTGGGCTCCTCCACTTACACTTCGACTGTAATCTTTTACCATTTCACTGATCAATTACAACTTGCTACTAGTTATCAATTTTGTGTACAATATATTATATGTACATATAAAAAATTCAAAATAGTAGTCATCCCTCTATTTGCTATCTTGCTGTTGCATTTTTTGTGGTCAGCCACTACGCCCGTCTTCTATTCCGGATTGATAACAGTGGTAGATAGTGGGATGATTTTTCATTTTTTTTTTTTTTTTTTTTTTTTGCAGTTTCTATATTGTATATACTCTAGACATAGTGATTCTAAAAAATGATAAAATTTACTCAAAATTCATATTTAACAATAAAATGGCATAGGTGTCTTAAACAAAACATACAAGTAAATACCATGTCGACTGCATACTTGATGCTCCTCAACTACAAATTTGATTTTATCATCTAACATCTTCAAATAAAAAATCCATTTTTTTGAGATGTCAAAGGTGTCCAATGAAAATAGGAAAATTGTTCCCATAGAGCTGCTTGTTCACCAAAAAGTAGTAGATGAATGCCTTTGTCTGTCCACCCATTTTCATGATCAAAACAGTTGGTTGTCTTCTAACTTTTTTGGTTATAAATTAATGTGGAACTCTAACCATAGTGTTCCATGTTAGTTCTTGTACATTCTTATCTGGGATTCATCAGGTTTTCATTCATAATTTCTGCAGGAAATTGATGAGTTATGTGATGAATGGGTTCCACAACCGCTTATTCCTTCTCTTGATAAAGATATGCACTATGAACCACCAGTGCTGGAGAGGTGATTACATTTTATCTTGTGGTAGCATCCTCATCTATTTTTATCATTTTAAATGTTTTGCACACTTTCAAATTTGTTACTTATGTGCTTTGTTGTCTGCGTTCCTTCCCTGAAATAATCTTATGTTTTCTACTTGTCAACTTCACTGCTATGGTTACATTTATTTGACTTAAATTCATGAACTTTTTTTAGGATGAGCCCTAGCATATTGGTAGGTTTTCCACCTTCTTACATGGTAGCCATAGTTATTGCAAGGTTAAGGCTGTCAGTTCAGACCCTACCTGGACCCCACTACAACGGCAGTCTTGTGCACTGGACAAAAGCACCCTTTAGTTTCTAATTTTTTTTCTTCTTATCCTGCGATAAAGAAAATTAGTGTAGATTATAAGTTCTCATGTGATTTCATAGGTTTTCAGATGTCTCCCTTGTATGTCATACATTTTCCGACTTGTTAACTTATATCATAGCATATAGGGAAGCTGTTTGTTTTATTGAAGTTAAAAATAAAGAAGGTTCATATTAGATTGTGATGATTGAGGGAGACTGGTATAGTTCACTAGAAGTACTTTTGGTTGAAGTATATTCTCTTGAAAAATTTCTGTGATGATCTTAATTAATCACGTAAATCAGACATTAGGATTACAGTTTGCACTCTGGACAAAAATTACATGATAAGTTCATAATATATATAGTAGTTTATTGTGAAGAAACCACCAATTTTCCATTTTTTAAAATACTGATTGTGATAAATTTCTTATGCAGTGCTGCTGGCCCACATACCATAGTTAATGGTAAAGAAGTTATCAATTTTTCCTCAGCAAACTATCTTGGGCTTATAGGTCATCAAAAGTTACTTGTAAGGACATGATCCCATATCAATAAATTCTATTTCTTGAACACTGCTTTGGTGCATTAAATTTATATTTACTTTATATTGTAGGACTCATGCACTTCTGCTCTAGAGAAATATGGTGTTGGTTCATGTGGTCCCCGTGGGTTTTATGGAACAATTGGTAAGGCTTAATATTAAAGTTTGTTTTTGAGGAAACACATGTTCGCTTATGATACTTTTCCTCTGCCCAGATGTACATCTTGACTGTGAAGCAAGAATAGCAAAATTTTTAGGAACGCCTGATTCAATTCTATACTCTTATGGGCTTTCCACCATGTTCAGTGCTATTCCTGCTTTCTCTAAAAAAGGAGATATAATTGTGGCGTAAGTATGCATAACTTTAAGCATCTACTATCCATTTTTGTTCAATTTTTTGTCTGATGACATTTATGTTGGGCATTGATAACCATACACCACATATATAGAACTATTTGGATGGTTTTATTCAGATCCGGCCCTAAGATTTTTGATACCCCGGAAGAAACATTAAAATTGTGCACTTCCAATTATTTCAATAATTATCTAAAAATATATTTTCAATAGAATTAATTAGAGATAATTAAAAAAAAAATATCTATACAGTACTAACTATTAAGTAAAAATAATAATTTGGTGCCCCTAAGAAAATGTTGCCCTAGGCTGCCGCCCCTCCCGCTCACCCTTAAGGCCACCCCTGGTTTTATTACTATCTTTACTTTTTTATTACAATGGTGTGAAGAATGAACTTAATTCTTTTTTCATCCACTTTATATAACTGATATTTCAAGCAGGCTCTAGTTTCATATATAATTTTGTATTTTTTAACAGGGATGAAGGAGTCCACTGGGGAATACAGAATGGCCTTTATCTTTCTAGAAGCACTGTCGTGTATTTTAAGCACAATGACATGGATTCTTTAGAAGAAACTTTAGAGAAGCTTACTTCTAAATACAAGCACACCAAAAATTTGAGGCGTTATATTGTTGTTGAAGCTCTCTACCAGGTAGATCTTGTCTATATTAGCCGTGCGCTTCTATATTTTTATTAGCTTTGCACTTCTGTATTAGCTTTGCACTTCTATATTAGCGTTATATTTTTATTGTTGTTGAAGCATATTTTTATTAGCTTTGCACTTCTATATTGTGTTTCGAATGGAGTGCTCACAGTCTTCAGTTGAATGAATTACTCGTTTCTTGCAATTTGAAGTATTGTAAATTGTTATATGAACTACTATTTCTGGTGAGATAGTATGGTAATAAACAAATGCCAATTGAAGATATAAACGAAGTATTAAAAACACAAATTGTGAGCATATGGTGTTACTATTAGACTGGTGCCTATCGCAATGTCGTTCTTTAAAACACTATTGCTGCTTGCTCTGGTTTTATCTACTATTCTGACTTATAGTAGATATTCTTTCAGTAGTTTTCATACTAGCATCTAAGTGAAAACTAAAATTTCTTGATCATTAATCGTTGACATATGTTTCCTTTTATAATTTTCAGAATTCTGGTCAAATAGCACCCTTAGATGATATCATTAAATTGAAGGAAAAATATCGGTTTCGTATTTTATTGGATGAGAGCAACTCATTTGGTGTGCTTGGAAGTTCTGGAAGAGGTCTCACTGAACACTATGGAGTTCCAGTATGTACCAAAAATCTCTGTTTGGGTGTGGGTGCATACACTCCCACCAGATTTACCGTTAATGCATTCAAATTTCTACTGCTGTTGGTGATTGTGATCGTGTGCTGCAGGTTGAGAAGTTAGATCTTATAACGGCTGCTATGGGACATGCATTGGCCACAGAAGGAGGATTCTGCACCGGAAGTGCAAGAGTTATAGATCACCAGGTATGGTAGTGTCATTTGTAATACTGATTCATAAACAAACTTGGATTTCCAAGTGTACTGAAATTAAGAATTTATTTTTAAGGCGAAGTGATTGGTTTGATCATGCTATTATTTCTCGTTCATTTTCCCTCCGCTAATGTCTGTGTTTTCAACTCTTACAGCGATTGAGTAGCTCTGGCTACGTCTTTTCTGCTTCTTTGCCTCCGTATCTTGCAAGCGCTGCAATTACAGCTATTGATGTCCTTGATGAAAATCCCAATATATTAACAAAGTTGAAGAACAACATTGCTGTGTTATGGAAAGGTAGGCTTTGATATCACCGCTGCTACTTTCTTAAATGGAATTGTATTGTAGTGTCTATTATTTGGCTCTTGCACAACAGATTGAAATGATCTCCAAATAAATAAATTAAAAAGGCTTTTATTTCGTTTTATTGTTTTGTTGAGAACTTTTATATGACATGCATTGGCTACTGCAGGGTTGTTGGAAATACCAGGCTTCACGATTGCGAGTCATCCAGAGTCACCAATTGTTTATTTGAGATTAAAGAAGTCAACGGGTTCTTTGAATGATGACCTACGCCTGCTTGAAAATATTGCCGAACGTGTAAGAATTGCTGTGACAATGTTTATTTCTTACTTTCGGTTTTGCTGGTACTTATTGTTCTGTATTCACAGGTTTTGAAAGAAGATTCTGTATTTGTGGTGACTTCTAGAAGATCAACATTAGACAAGTGCCGTTTGCCTGTAGGAATAAGATTGTTTGTTTCTGCAGGGCATTCAGAGTCTGATCTTCACAAGGCATCTGAATCATTGAAAAGGGTTACTGCATTAGTTTTGTAG

Protein sequence

>MS.gene50200.t1

MVGGSIASLFVMHLGPAFWVIVYTKVVKFKNLDSSVVNIVLQQFSRAKQPLAAIGYSPSTKNEIDELCDEWVPQPLIPSLDKDMHYEPPVLESAAGPHTIVNGKEVINFSSANYLGLIGHQKLLDSCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPAFSKKGDIIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLEETLEKLTSKYKHTKNLRRYIVVEALYQNSGQIAPLDDIIKLKEKYRFRILLDESNSFGVLGSSGRGLTEHYGVPVEKLDLITAAMGHALATEGGFCTGSARVIDHQRLSSSGYVFSASLPPYLASAAITAIDVLDENPNILTKLKNNIAVLWKGLLEIPGFTIASHPESPIVYLRLKKSTGSLNDDLRLLENIAERVLKEDSVFVVTSRRSTLDKCRLPVGIRLFVSAGHSESDLHKASESLKRVTALVL