Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50200.t1 | XP_013459883.1 | 97.6 | 417 | 10 | 0 | 58 | 474 | 64 | 480 | 4.10E-234 | 820.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50200.t1 | Q94IB8 | 78.4 | 417 | 90 | 0 | 58 | 474 | 63 | 479 | 7.0e-198 | 691.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50200.t1 | A0A072UVT1 | 97.6 | 417 | 10 | 0 | 58 | 474 | 64 | 480 | 3.0e-234 | 820.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene50200 | 0.823266 | 1.52E-53 | -1.69E-46 |
MS.gene049166 | MS.gene50200 | 0.813027 | 3.15E-51 | -1.69E-46 |
MS.gene04917 | MS.gene50200 | 0.800758 | 1.24E-48 | -1.69E-46 |
MS.gene049283 | MS.gene50200 | 0.803903 | 2.79E-49 | -1.69E-46 |
MS.gene049368 | MS.gene50200 | 0.825884 | 3.67E-54 | -1.69E-46 |
MS.gene049786 | MS.gene50200 | 0.847462 | 1.14E-59 | -1.69E-46 |
MS.gene049983 | MS.gene50200 | 0.835469 | 1.65E-56 | -1.69E-46 |
MS.gene050317 | MS.gene50200 | 0.815679 | 8.17E-52 | -1.69E-46 |
MS.gene050646 | MS.gene50200 | 0.817545 | 3.12E-52 | -1.69E-46 |
MS.gene050654 | MS.gene50200 | 0.854702 | 1.03E-61 | -1.69E-46 |
MS.gene050737 | MS.gene50200 | 0.827819 | 1.27E-54 | -1.69E-46 |
MS.gene050941 | MS.gene50200 | 0.858135 | 1.01E-62 | -1.69E-46 |
MS.gene051003 | MS.gene50200 | 0.833836 | 4.24E-56 | -1.69E-46 |
MS.gene051184 | MS.gene50200 | 0.811246 | 7.71E-51 | -1.69E-46 |
MS.gene051234 | MS.gene50200 | 0.80937 | 1.96E-50 | -1.69E-46 |
MS.gene051365 | MS.gene50200 | 0.802738 | 4.87E-49 | -1.69E-46 |
MS.gene051541 | MS.gene50200 | 0.804021 | 2.64E-49 | -1.69E-46 |
MS.gene051856 | MS.gene50200 | 0.803587 | 3.25E-49 | -1.69E-46 |
MS.gene051975 | MS.gene50200 | 0.813125 | 3.00E-51 | -1.69E-46 |
MS.gene052052 | MS.gene50200 | 0.806204 | 9.21E-50 | -1.69E-46 |
MS.gene052307 | MS.gene50200 | 0.815592 | 8.54E-52 | -1.69E-46 |
MS.gene052342 | MS.gene50200 | 0.831033 | 2.10E-55 | -1.69E-46 |
MS.gene052434 | MS.gene50200 | 0.840104 | 1.06E-57 | -1.69E-46 |
MS.gene052463 | MS.gene50200 | 0.826934 | 2.07E-54 | -1.69E-46 |
MS.gene052518 | MS.gene50200 | 0.839245 | 1.78E-57 | -1.69E-46 |
MS.gene053298 | MS.gene50200 | 0.807135 | 5.86E-50 | -1.69E-46 |
MS.gene053381 | MS.gene50200 | 0.816779 | 4.64E-52 | -1.69E-46 |
MS.gene053456 | MS.gene50200 | 0.809166 | 2.16E-50 | -1.69E-46 |
MS.gene054479 | MS.gene50200 | 0.826954 | 2.04E-54 | -1.69E-46 |
MS.gene05458 | MS.gene50200 | 0.816124 | 6.50E-52 | -1.69E-46 |
MS.gene054892 | MS.gene50200 | 0.81841 | 1.99E-52 | -1.69E-46 |
MS.gene054893 | MS.gene50200 | 0.818455 | 1.94E-52 | -1.69E-46 |
MS.gene05517 | MS.gene50200 | 0.812371 | 4.38E-51 | -1.69E-46 |
MS.gene055311 | MS.gene50200 | 0.820854 | 5.50E-53 | -1.69E-46 |
MS.gene055313 | MS.gene50200 | 0.81426 | 1.69E-51 | -1.69E-46 |
MS.gene055314 | MS.gene50200 | 0.801409 | 9.13E-49 | -1.69E-46 |
MS.gene055513 | MS.gene50200 | 0.826781 | 2.25E-54 | -1.69E-46 |
MS.gene055603 | MS.gene50200 | 0.805813 | 1.11E-49 | -1.69E-46 |
MS.gene056045 | MS.gene50200 | 0.815563 | 8.67E-52 | -1.69E-46 |
MS.gene056181 | MS.gene50200 | 0.839815 | 1.26E-57 | -1.69E-46 |
MS.gene056752 | MS.gene50200 | 0.801277 | 9.71E-49 | -1.69E-46 |
MS.gene056787 | MS.gene50200 | 0.833482 | 5.20E-56 | -1.69E-46 |
MS.gene056831 | MS.gene50200 | 0.825329 | 4.98E-54 | -1.69E-46 |
MS.gene056849 | MS.gene50200 | 0.817494 | 3.20E-52 | -1.69E-46 |
MS.gene057102 | MS.gene50200 | 0.82935 | 5.41E-55 | -1.69E-46 |
MS.gene057360 | MS.gene50200 | 0.812997 | 3.20E-51 | -1.69E-46 |
MS.gene058278 | MS.gene50200 | 0.834516 | 2.86E-56 | -1.69E-46 |
MS.gene058429 | MS.gene50200 | 0.819088 | 1.40E-52 | -1.69E-46 |
MS.gene059050 | MS.gene50200 | 0.818515 | 1.88E-52 | -1.69E-46 |
MS.gene059144 | MS.gene50200 | 0.810354 | 1.20E-50 | -1.69E-46 |
MS.gene059146 | MS.gene50200 | 0.816887 | 4.39E-52 | -1.69E-46 |
MS.gene059170 | MS.gene50200 | 0.815777 | 7.77E-52 | -1.69E-46 |
MS.gene059283 | MS.gene50200 | 0.816293 | 5.96E-52 | -1.69E-46 |
MS.gene059290 | MS.gene50200 | 0.813307 | 2.73E-51 | -1.69E-46 |
MS.gene059842 | MS.gene50200 | 0.80709 | 5.99E-50 | -1.69E-46 |
MS.gene06010 | MS.gene50200 | 0.839837 | 1.25E-57 | -1.69E-46 |
MS.gene06011 | MS.gene50200 | 0.836219 | 1.06E-56 | -1.69E-46 |
MS.gene060259 | MS.gene50200 | 0.84393 | 1.04E-58 | -1.69E-46 |
MS.gene060763 | MS.gene50200 | 0.823755 | 1.17E-53 | -1.69E-46 |
MS.gene060870 | MS.gene50200 | 0.811548 | 6.63E-51 | -1.69E-46 |
MS.gene060932 | MS.gene50200 | 0.852677 | 3.95E-61 | -1.69E-46 |
MS.gene060933 | MS.gene50200 | 0.800471 | 1.42E-48 | -1.69E-46 |
MS.gene060935 | MS.gene50200 | 0.818297 | 2.11E-52 | -1.69E-46 |
MS.gene060937 | MS.gene50200 | 0.829137 | 6.09E-55 | -1.69E-46 |
MS.gene061100 | MS.gene50200 | 0.815754 | 7.86E-52 | -1.69E-46 |
MS.gene06121 | MS.gene50200 | 0.807199 | 5.68E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene50200 | MS.gene074392 | PPI |
MS.gene50200 | MS.gene25914 | PPI |
MS.gene022257 | MS.gene50200 | PPI |
MS.gene50200 | MS.gene70587 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50200.t1 | MTR_3g054030 | 97.602 | 417 | 10 | 0 | 58 | 474 | 64 | 480 | 0.0 | 838 |
MS.gene50200.t1 | MTR_5g072020 | 97.602 | 417 | 10 | 0 | 58 | 474 | 64 | 480 | 0.0 | 838 |
MS.gene50200.t1 | MTR_1g018970 | 81.139 | 281 | 53 | 0 | 58 | 338 | 63 | 343 | 3.84e-167 | 475 |
MS.gene50200.t1 | MTR_2g090820 | 75.410 | 122 | 18 | 1 | 335 | 444 | 15 | 136 | 1.95e-54 | 179 |
MS.gene50200.t1 | MTR_1g019030 | 90.722 | 97 | 9 | 0 | 378 | 474 | 27 | 123 | 3.44e-52 | 172 |
MS.gene50200.t1 | MTR_1g019000 | 94.595 | 74 | 4 | 0 | 299 | 372 | 21 | 94 | 3.30e-42 | 145 |
MS.gene50200.t1 | MTR_6g033290 | 25.393 | 382 | 257 | 7 | 105 | 473 | 101 | 467 | 2.06e-34 | 135 |
MS.gene50200.t1 | MTR_3g008020 | 22.568 | 257 | 169 | 7 | 104 | 340 | 100 | 346 | 8.36e-15 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50200.t1 | AT4G36480 | 78.417 | 417 | 90 | 0 | 58 | 474 | 63 | 479 | 0.0 | 704 |
MS.gene50200.t1 | AT4G36480 | 78.417 | 417 | 90 | 0 | 58 | 474 | 63 | 479 | 0.0 | 704 |
MS.gene50200.t1 | AT4G36480 | 82.051 | 273 | 49 | 0 | 58 | 330 | 63 | 335 | 1.14e-174 | 494 |
MS.gene50200.t1 | AT3G48780 | 26.247 | 381 | 253 | 7 | 105 | 472 | 101 | 466 | 3.11e-36 | 140 |
MS.gene50200.t1 | AT3G48780 | 26.247 | 381 | 253 | 7 | 105 | 472 | 101 | 466 | 3.11e-36 | 140 |
MS.gene50200.t1 | AT5G23670 | 25.459 | 381 | 256 | 7 | 105 | 472 | 101 | 466 | 1.90e-35 | 138 |
MS.gene50200.t1 | AT5G23670 | 25.459 | 381 | 256 | 7 | 105 | 472 | 101 | 466 | 1.90e-35 | 138 |
MS.gene50200.t1 | AT3G48790 | 26.506 | 332 | 216 | 7 | 146 | 468 | 7 | 319 | 2.21e-27 | 112 |
MS.gene50200.t1 | AT3G48790 | 25.566 | 309 | 202 | 7 | 173 | 472 | 2 | 291 | 5.66e-20 | 90.9 |
MS.gene50200.t1 | AT5G04620 | 24.038 | 416 | 250 | 15 | 77 | 461 | 70 | 450 | 1.44e-19 | 91.7 |
MS.gene50200.t1 | AT5G04620 | 23.891 | 293 | 188 | 7 | 77 | 344 | 70 | 352 | 1.10e-18 | 88.6 |
MS.gene50200.t1 | AT5G04620 | 24.793 | 363 | 210 | 16 | 111 | 461 | 6 | 317 | 1.36e-12 | 69.3 |
Find 98 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCAACTTTGTTAATATAT+TGG | 0.157469 | 5.2:+60584665 | None:intergenic |
GATTCAATTCTATACTCTTA+TGG | 0.157510 | 5.2:-60586510 | MS.gene50200:CDS |
CAATTTAATGATATCATCTA+AGG | 0.207047 | 5.2:+60585248 | None:intergenic |
TCTTTGTTTGTGATGCATTT+AGG | 0.233905 | 5.2:-60588956 | MS.gene50200:CDS |
TTCAACTTTGTTAATATATT+GGG | 0.250485 | 5.2:+60584666 | None:intergenic |
TTTGGTGTGCTTGGAAGTTC+TGG | 0.252911 | 5.2:-60585180 | MS.gene50200:CDS |
TGCATTTAGGACCTGCCTTT+TGG | 0.256502 | 5.2:-60588943 | MS.gene50200:CDS |
ATCTATAACTCTTGCACTTC+CGG | 0.274595 | 5.2:+60584949 | None:intergenic |
ATTCAATTCTATACTCTTAT+GGG | 0.280484 | 5.2:-60586509 | MS.gene50200:CDS |
GCAAACTATCTTGGGCTTAT+AGG | 0.284137 | 5.2:-60586826 | MS.gene50200:CDS |
AACTTCTTTACCATTAACTA+TGG | 0.324145 | 5.2:+60586864 | None:intergenic |
GGCCCACATACCATAGTTAA+TGG | 0.336802 | 5.2:-60586874 | MS.gene50200:CDS |
GTTGTAAAATTCAAGAATTT+AGG | 0.340530 | 5.2:-60588902 | MS.gene50200:intron |
GCTATAGCCTATGGCGGCTA+GGG | 0.345415 | 5.2:+60588574 | None:intergenic |
AGAACAACATTGCTGTGTTA+TGG | 0.375479 | 5.2:-60584644 | MS.gene50200:CDS |
TTTAATCTCAAATAAACAAT+TGG | 0.376539 | 5.2:+60584395 | None:intergenic |
TTATATCACATTCTTGGTTG+AGG | 0.385958 | 5.2:+60588550 | None:intergenic |
TTTCCTCAGCAAACTATCTT+GGG | 0.388101 | 5.2:-60586834 | MS.gene50200:CDS |
TATATCACATTCTTGGTTGA+GGG | 0.391631 | 5.2:+60588551 | None:intergenic |
ACTTCTGCTCTAGAGAAATA+TGG | 0.391710 | 5.2:-60586694 | MS.gene50200:CDS |
TATGGCGGCTAGGGGCTGCT+TGG | 0.399787 | 5.2:+60588583 | None:intergenic |
CACAGCAATTCTTACACGTT+CGG | 0.407510 | 5.2:+60584322 | None:intergenic |
ATAAGATTGTTTGTTTCTGC+AGG | 0.409979 | 5.2:-60584168 | MS.gene50200:CDS |
AGCAACTCATTTGGTGTGCT+TGG | 0.418751 | 5.2:-60585189 | MS.gene50200:CDS |
AGATGATATCATTAAATTGA+AGG | 0.426232 | 5.2:-60585244 | MS.gene50200:CDS |
CAGTGCTTCTAGAAAGATAA+AGG | 0.430339 | 5.2:+60585911 | None:intergenic |
GAAAGAAGATTCTGTATTTG+TGG | 0.431444 | 5.2:-60584238 | MS.gene50200:CDS |
AGGCATCTGAATCATTGAAA+AGG | 0.432396 | 5.2:-60584122 | MS.gene50200:CDS |
TTGGATGAGAGCAACTCATT+TGG | 0.436722 | 5.2:-60585198 | MS.gene50200:CDS |
GGCTATAGCCTATGGCGGCT+AGG | 0.449256 | 5.2:+60588573 | None:intergenic |
TAAGAGTATAGAATTGAATC+AGG | 0.451302 | 5.2:+60586513 | None:intergenic |
TTACCATTAACTATGGTATG+TGG | 0.452309 | 5.2:+60586871 | None:intergenic |
TTGATGAGTTATGTGATGAA+TGG | 0.460291 | 5.2:-60587731 | MS.gene50200:CDS |
AATTTCTTATGCAGTGCTGC+TGG | 0.466285 | 5.2:-60586895 | MS.gene50200:intron |
AGATCTTATAACGGCTGCTA+TGG | 0.467186 | 5.2:-60585005 | MS.gene50200:CDS |
AAATAAACAATTGGTGACTC+TGG | 0.467192 | 5.2:+60584404 | None:intergenic |
AAGCAGCCCCTAGCCGCCAT+AGG | 0.480277 | 5.2:-60588581 | MS.gene50200:CDS |
AGAGGTCTCACTGAACACTA+TGG | 0.480877 | 5.2:-60585156 | MS.gene50200:CDS |
GCACTATGAACCACCAGTGC+TGG | 0.487834 | 5.2:-60587670 | MS.gene50200:CDS |
TTGAGATTAAAGAAGTCAAC+GGG | 0.490251 | 5.2:-60584383 | MS.gene50200:CDS |
ATTGGCTACTGCAGGGTTGT+TGG | 0.493292 | 5.2:-60584456 | MS.gene50200:intron |
GGCATCTGAATCATTGAAAA+GGG | 0.498021 | 5.2:-60584121 | MS.gene50200:CDS |
GGCTGCTATGGGACATGCAT+TGG | 0.498301 | 5.2:-60584993 | MS.gene50200:CDS |
TGATGAGTTATGTGATGAAT+GGG | 0.510790 | 5.2:-60587730 | MS.gene50200:CDS |
TTACAGCGATTGAGTAGCTC+TGG | 0.523021 | 5.2:-60584765 | MS.gene50200:intron |
AGAGAAGGAATAAGCGGTTG+TGG | 0.527869 | 5.2:+60587705 | None:intergenic |
ATCTTATTCCTACAGGCAAA+CGG | 0.529325 | 5.2:+60584184 | None:intergenic |
GATCTTATAACGGCTGCTAT+GGG | 0.532654 | 5.2:-60585004 | MS.gene50200:CDS |
TGTAATCACCTCTCCAGCAC+TGG | 0.535327 | 5.2:+60587657 | None:intergenic |
GTGCTTGGAAGTTCTGGAAG+AGG | 0.536425 | 5.2:-60585174 | MS.gene50200:CDS |
GCTCTAGAGAAATATGGTGT+TGG | 0.536576 | 5.2:-60586688 | MS.gene50200:CDS |
TGAGAAGTTAGATCTTATAA+CGG | 0.537678 | 5.2:-60585014 | MS.gene50200:CDS |
TGCTATTGAACCACCGACCA+TGG | 0.539561 | 5.2:+60588979 | None:intergenic |
CAGGGATGAAGGAGTCCACT+GGG | 0.540737 | 5.2:-60585947 | MS.gene50200:CDS |
ATTGCAGCGCTTGCAAGATA+CGG | 0.544886 | 5.2:+60584717 | None:intergenic |
GGTATAGACAATCACCCAAA+AGG | 0.548264 | 5.2:+60588928 | None:intergenic |
ATATCACATTCTTGGTTGAG+GGG | 0.551510 | 5.2:+60588552 | None:intergenic |
TGTTGTTGAAGCTCTCTACC+AGG | 0.553954 | 5.2:-60585791 | MS.gene50200:intron |
TAGACAATCACCCAAAAGGC+AGG | 0.558082 | 5.2:+60588932 | None:intergenic |
TACCATTAACTATGGTATGT+GGG | 0.558768 | 5.2:+60586872 | None:intergenic |
ACAAACAATCTTATTCCTAC+AGG | 0.559718 | 5.2:+60584177 | None:intergenic |
ACAGGGATGAAGGAGTCCAC+TGG | 0.559845 | 5.2:-60585948 | MS.gene50200:intron |
CAATTGTTCCATAAAACCCA+CGG | 0.560580 | 5.2:+60586653 | None:intergenic |
GGTTGAGGGGCTATAGCCTA+TGG | 0.562770 | 5.2:+60588565 | None:intergenic |
TGACTCGCAATCGTGAAGCC+TGG | 0.563804 | 5.2:+60584428 | None:intergenic |
TTGGGTGATTGTCTATACCA+AGG | 0.564840 | 5.2:-60588924 | MS.gene50200:CDS |
TGCATATCTTTATCAAGAGA+AGG | 0.565672 | 5.2:+60587690 | None:intergenic |
AACATTGCTGTGTTATGGAA+AGG | 0.565817 | 5.2:-60584639 | MS.gene50200:intron |
TGCAAGAGTTATAGATCACC+AGG | 0.568076 | 5.2:-60584942 | MS.gene50200:intron |
GCAGGGTTGTTGGAAATACC+AGG | 0.569040 | 5.2:-60584446 | MS.gene50200:intron |
TTGGTTCATGTGGTCCCCGT+GGG | 0.570350 | 5.2:-60586669 | MS.gene50200:CDS |
CGCTGTCCTTCCATGGTCGG+TGG | 0.570920 | 5.2:-60588989 | None:intergenic |
TAAGATTGTTTGTTTCTGCA+GGG | 0.573662 | 5.2:-60584167 | MS.gene50200:CDS |
CTATAGCCTATGGCGGCTAG+GGG | 0.576546 | 5.2:+60588575 | None:intergenic |
TTTGAGATTAAAGAAGTCAA+CGG | 0.584081 | 5.2:-60584384 | MS.gene50200:CDS |
AATTTAATGATATCATCTAA+GGG | 0.585413 | 5.2:+60585249 | None:intergenic |
AGCAGGAATAGCACTGAACA+TGG | 0.585997 | 5.2:+60586479 | None:intergenic |
CATGCATTGGCCACAGAAGG+AGG | 0.588651 | 5.2:-60584980 | MS.gene50200:CDS |
AATCGCTGTCCTTCCATGGT+CGG | 0.589671 | 5.2:-60588992 | None:intergenic |
AATTGTTCCATAAAACCCAC+GGG | 0.590052 | 5.2:+60586654 | None:intergenic |
GGACATGCATTGGCCACAGA+AGG | 0.590206 | 5.2:-60584983 | MS.gene50200:CDS |
GTCCACTGGGGAATACAGAA+TGG | 0.593062 | 5.2:-60585934 | MS.gene50200:CDS |
ATGAACCACCAGTGCTGGAG+AGG | 0.602723 | 5.2:-60587665 | MS.gene50200:intron |
ACAGAAGGAGGATTCTGCAC+CGG | 0.604655 | 5.2:-60584968 | MS.gene50200:CDS |
GGTGCAGAATCCTCCTTCTG+TGG | 0.610091 | 5.2:+60584970 | None:intergenic |
GACAAGTGCCGTTTGCCTGT+AGG | 0.612786 | 5.2:-60584192 | MS.gene50200:CDS |
AATCACCTCTCCAGCACTGG+TGG | 0.628042 | 5.2:+60587660 | None:intergenic |
AAATATGGTGTTGGTTCATG+TGG | 0.629485 | 5.2:-60586679 | MS.gene50200:CDS |
GTTGGTTCATGTGGTCCCCG+TGG | 0.636228 | 5.2:-60586670 | MS.gene50200:CDS |
TTATCAAGAGAAGGAATAAG+CGG | 0.647888 | 5.2:+60587699 | None:intergenic |
TTCAGAGTCTGATCTTCACA+AGG | 0.660377 | 5.2:-60584142 | MS.gene50200:CDS |
GCAGCGCTTGCAAGATACGG+AGG | 0.673580 | 5.2:+60584720 | None:intergenic |
AAGCCCAAGATAGTTTGCTG+AGG | 0.686766 | 5.2:+60586831 | None:intergenic |
GGCCATTCTGTATTCCCCAG+TGG | 0.696448 | 5.2:+60585932 | None:intergenic |
AGGAATAGCACTGAACATGG+TGG | 0.728012 | 5.2:+60586482 | None:intergenic |
TGAGGGGCTATAGCCTATGG+CGG | 0.749476 | 5.2:+60588568 | None:intergenic |
AGGGATGAAGGAGTCCACTG+GGG | 0.777778 | 5.2:-60585946 | MS.gene50200:CDS |
ATTGTTCCATAAAACCCACG+GGG | 0.815269 | 5.2:+60586655 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAATTAGAAACTAAA+GGG | + | chr5.2:60585763-60585782 | None:intergenic | 10.0% |
!! | ATTCATATTTAACAATAAAA+TGG | - | chr5.2:60584965-60584984 | MS.gene50200:CDS | 10.0% |
!! | TAGATAATTATTGAAATAAT+TGG | + | chr5.2:60586832-60586851 | None:intergenic | 10.0% |
!! | TCCAAATAAATAAATTAAAA+AGG | - | chr5.2:60588552-60588571 | MS.gene50200:intron | 10.0% |
!! | TTATATTTACTTTATATTGT+AGG | - | chr5.2:60586353-60586372 | MS.gene50200:intron | 10.0% |
!!! | ATAATTTTGTATTTTTTAAC+AGG | - | chr5.2:60587112-60587131 | MS.gene50200:intron | 10.0% |
!!! | TAATTTTGTATTTTTTAACA+GGG | - | chr5.2:60587113-60587132 | MS.gene50200:intron | 10.0% |
!!! | TATTTTAAAAAATGGAAAAT+TGG | + | chr5.2:60586151-60586170 | None:intergenic | 10.0% |
!! | AACTATTAAATTACAATGTT+AGG | - | chr5.2:60584558-60584577 | MS.gene50200:intron | 15.0% |
!! | AATTTAATGATATCATCTAA+GGG | + | chr5.2:60587832-60587851 | None:intergenic | 15.0% |
!! | ACTATTAAATTACAATGTTA+GGG | - | chr5.2:60584559-60584578 | MS.gene50200:intron | 15.0% |
!! | AGAAATAGAATTTATTGATA+TGG | + | chr5.2:60586308-60586327 | None:intergenic | 15.0% |
!! | ATTGAAGTTAAAAATAAAGA+AGG | - | chr5.2:60585925-60585944 | MS.gene50200:CDS | 15.0% |
!! | GAAAAAAAATTAGAAACTAA+AGG | + | chr5.2:60585764-60585783 | None:intergenic | 15.0% |
!! | GAAATAGAATTTATTGATAT+GGG | + | chr5.2:60586307-60586326 | None:intergenic | 15.0% |
!! | TAAAATGATAAAAATAGATG+AGG | + | chr5.2:60585466-60585485 | None:intergenic | 15.0% |
!! | TTAAATTGAAGGAAAAATAT+CGG | - | chr5.2:60587845-60587864 | MS.gene50200:intron | 15.0% |
!! | TTCAACTTTGTTAATATATT+GGG | + | chr5.2:60588415-60588434 | None:intergenic | 15.0% |
!! | TTTAATCTCAAATAAACAAT+TGG | + | chr5.2:60588686-60588705 | None:intergenic | 15.0% |
!!! | AATATTAAAGTTTGTTTTTG+AGG | - | chr5.2:60586457-60586476 | MS.gene50200:CDS | 15.0% |
!!! | ACAATCAGTATTTTAAAAAA+TGG | + | chr5.2:60586159-60586178 | None:intergenic | 15.0% |
!!! | AGAATTCTGAAAATTATAAA+AGG | + | chr5.2:60587797-60587816 | None:intergenic | 15.0% |
!!! | GCCTTTTTAATTTATTTATT+TGG | + | chr5.2:60588556-60588575 | None:intergenic | 15.0% |
!!! | GTATATATTATAGGTTTTTT+AGG | + | chr5.2:60584252-60584271 | None:intergenic | 15.0% |
!!! | TAAATTCATGAACTTTTTTT+AGG | - | chr5.2:60585605-60585624 | MS.gene50200:intron | 15.0% |
!!! | TCTTTACTTTTTTATTACAA+TGG | - | chr5.2:60587015-60587034 | MS.gene50200:intron | 15.0% |
!!! | TTTTATAATTTTCAGAATTC+TGG | - | chr5.2:60587796-60587815 | MS.gene50200:intron | 15.0% |
!!! | TTTTTGGTTATAAATTAATG+TGG | - | chr5.2:60585239-60585258 | MS.gene50200:CDS | 15.0% |
!! | AACTTATATCATAGCATATA+GGG | - | chr5.2:60585888-60585907 | MS.gene50200:CDS | 20.0% |
!! | AGAAAACATAAGATTATTTC+AGG | + | chr5.2:60585546-60585565 | None:intergenic | 20.0% |
!! | AGATGATATCATTAAATTGA+AGG | - | chr5.2:60587834-60587853 | MS.gene50200:intron | 20.0% |
!! | ATTCAATTCTATACTCTTAT+GGG | - | chr5.2:60586569-60586588 | MS.gene50200:intron | 20.0% |
!! | ATTTAACAATAAAATGGCAT+AGG | - | chr5.2:60584971-60584990 | MS.gene50200:CDS | 20.0% |
!! | CAATTTAATGATATCATCTA+AGG | + | chr5.2:60587833-60587852 | None:intergenic | 20.0% |
!! | CTTAAAAATATAATACCATC+AGG | - | chr5.2:60584271-60584290 | MS.gene50200:intron | 20.0% |
!! | CTTCAACTTTGTTAATATAT+TGG | + | chr5.2:60588416-60588435 | None:intergenic | 20.0% |
!! | GAAAACATAAGATTATTTCA+GGG | + | chr5.2:60585545-60585564 | None:intergenic | 20.0% |
!! | GAAATATCAGTTATATAAAG+TGG | + | chr5.2:60587071-60587090 | None:intergenic | 20.0% |
!! | GACAAAAAATTGAACAAAAA+TGG | + | chr5.2:60586685-60586704 | None:intergenic | 20.0% |
!! | GTTGTAAAATTCAAGAATTT+AGG | - | chr5.2:60584176-60584195 | MS.gene50200:CDS | 20.0% |
!! | GTTTGATCTTATCTATTATT+GGG | + | chr5.2:60584383-60584402 | None:intergenic | 20.0% |
!! | TAAAAAAGGAGATATAATTG+TGG | - | chr5.2:60586627-60586646 | MS.gene50200:intron | 20.0% |
!! | TAAAATCAAATTTGTAGTTG+AGG | + | chr5.2:60585050-60585069 | None:intergenic | 20.0% |
!! | TAAAGATAGTAATAAAACCA+GGG | + | chr5.2:60587001-60587020 | None:intergenic | 20.0% |
!! | TAACTTATATCATAGCATAT+AGG | - | chr5.2:60585887-60585906 | MS.gene50200:CDS | 20.0% |
!! | TAGAAATTTGAATGCATTAA+CGG | + | chr5.2:60588010-60588029 | None:intergenic | 20.0% |
!! | TATGATATAAGTTAACAAGT+CGG | + | chr5.2:60585881-60585900 | None:intergenic | 20.0% |
!! | TGTTTGATCTTATCTATTAT+TGG | + | chr5.2:60584384-60584403 | None:intergenic | 20.0% |
!! | TTTAAAAAATGGAAAATTGG+TGG | + | chr5.2:60586148-60586167 | None:intergenic | 20.0% |
!!! | AACAATTTTCCTATTTTCAT+TGG | + | chr5.2:60585125-60585144 | None:intergenic | 20.0% |
!!! | CAATGTTTATTTCTTACTTT+CGG | - | chr5.2:60588780-60588799 | MS.gene50200:intron | 20.0% |
!!! | TACTTTGATTTATTATGAAG+TGG | + | chr5.2:60584317-60584336 | None:intergenic | 20.0% |
!!! | TCTTGGTATTTTACTATTTT+AGG | - | chr5.2:60584590-60584609 | MS.gene50200:intron | 20.0% |
!!! | TCTTTTTTATATCACATTCT+TGG | + | chr5.2:60584537-60584556 | None:intergenic | 20.0% |
! | AAAGATAGTAATAAAACCAG+GGG | + | chr5.2:60587000-60587019 | None:intergenic | 25.0% |
! | AACAAATGTTATCAATCTCT+TGG | - | chr5.2:60584400-60584419 | MS.gene50200:CDS | 25.0% |
! | AACTTCTTTACCATTAACTA+TGG | + | chr5.2:60586217-60586236 | None:intergenic | 25.0% |
! | ACCACATATATAGAACTATT+TGG | - | chr5.2:60586739-60586758 | MS.gene50200:intron | 25.0% |
! | ACTTCGTTTATATCTTCAAT+TGG | + | chr5.2:60587575-60587594 | None:intergenic | 25.0% |
! | ATATAACTGATATTTCAAGC+AGG | - | chr5.2:60587075-60587094 | MS.gene50200:intron | 25.0% |
! | ATATTAGATTGTGATGATTG+AGG | - | chr5.2:60585951-60585970 | MS.gene50200:intron | 25.0% |
! | ATTCTTAATTTCAGTACACT+TGG | + | chr5.2:60588209-60588228 | None:intergenic | 25.0% |
! | CATATATAGAACTATTTGGA+TGG | - | chr5.2:60586743-60586762 | MS.gene50200:intron | 25.0% |
! | GATTCAATTCTATACTCTTA+TGG | - | chr5.2:60586568-60586587 | MS.gene50200:intron | 25.0% |
! | GTAAAGATAGTAATAAAACC+AGG | + | chr5.2:60587002-60587021 | None:intergenic | 25.0% |
! | GTATTGTAGTGTCTATTATT+TGG | - | chr5.2:60588503-60588522 | MS.gene50200:intron | 25.0% |
! | GTTATATGAACTACTATTTC+TGG | - | chr5.2:60587523-60587542 | MS.gene50200:intron | 25.0% |
! | TATTAGATTGTGATGATTGA+GGG | - | chr5.2:60585952-60585971 | MS.gene50200:intron | 25.0% |
! | TGAGAAGTTAGATCTTATAA+CGG | - | chr5.2:60588064-60588083 | MS.gene50200:intron | 25.0% |
!! | AACTTTTATATGACATGCAT+TGG | - | chr5.2:60588604-60588623 | MS.gene50200:CDS | 25.0% |
!! | AATAAAAATATAGAAGCGCA+CGG | + | chr5.2:60587332-60587351 | None:intergenic | 25.0% |
!! | AATATAACGCCTCAAATTTT+TGG | + | chr5.2:60587268-60587287 | None:intergenic | 25.0% |
!! | AGGTAATCTTTTACACATTT+AGG | + | chr5.2:60584232-60584251 | None:intergenic | 25.0% |
!! | ATATATTGGGATTTTCATCA+AGG | + | chr5.2:60588402-60588421 | None:intergenic | 25.0% |
!! | ATTCTTGAATTTTACAACCT+TGG | + | chr5.2:60584174-60584193 | None:intergenic | 25.0% |
!! | ATTTTCATGATCAAAACAGT+TGG | - | chr5.2:60585203-60585222 | MS.gene50200:CDS | 25.0% |
!! | GCAAGAATAGCAAAATTTTT+AGG | - | chr5.2:60586538-60586557 | MS.gene50200:CDS | 25.0% |
!! | GGTAATCTTTTACACATTTA+GGG | + | chr5.2:60584231-60584250 | None:intergenic | 25.0% |
!! | GTAATCTTTTACACATTTAG+GGG | + | chr5.2:60584230-60584249 | None:intergenic | 25.0% |
!! | TAAGAGTATAGAATTGAATC+AGG | + | chr5.2:60586568-60586587 | None:intergenic | 25.0% |
!! | TCCAAATAGTTCTATATATG+TGG | + | chr5.2:60586743-60586762 | None:intergenic | 25.0% |
!! | TTTGAGATTAAAGAAGTCAA+CGG | - | chr5.2:60588694-60588713 | MS.gene50200:intron | 25.0% |
!! | TTTTCATTCATAATTTCTGC+AGG | - | chr5.2:60585321-60585340 | MS.gene50200:intron | 25.0% |
!!! | AACTGTTTTGATCATGAAAA+TGG | + | chr5.2:60585204-60585223 | None:intergenic | 25.0% |
!!! | ACAATTTTAATGTTTCTTCC+GGG | + | chr5.2:60586803-60586822 | None:intergenic | 25.0% |
!!! | ACTGTTTTGATCATGAAAAT+GGG | + | chr5.2:60585203-60585222 | None:intergenic | 25.0% |
!!! | ATATCGGTTTCGTATTTTAT+TGG | - | chr5.2:60587861-60587880 | MS.gene50200:intron | 25.0% |
!!! | CACAATTTTAATGTTTCTTC+CGG | + | chr5.2:60586804-60586823 | None:intergenic | 25.0% |
!!! | TACTGATTCATAAACAAACT+TGG | - | chr5.2:60588179-60588198 | MS.gene50200:intron | 25.0% |
AAACACAAATTGTGAGCATA+TGG | - | chr5.2:60587600-60587619 | MS.gene50200:intron | 30.0% | |
AAGTTCTCATGTGATTTCAT+AGG | - | chr5.2:60585821-60585840 | MS.gene50200:CDS | 30.0% | |
AATCACGTAAATCAGACATT+AGG | - | chr5.2:60586050-60586069 | MS.gene50200:intron | 30.0% | |
ACAAACAATCTTATTCCTAC+AGG | + | chr5.2:60588904-60588923 | None:intergenic | 30.0% | |
ACATAAGATTATTTCAGGGA+AGG | + | chr5.2:60585541-60585560 | None:intergenic | 30.0% | |
ACTTATTGTTCTGTATTCAC+AGG | - | chr5.2:60588813-60588832 | MS.gene50200:intron | 30.0% | |
AGAATGTACAAGAACTAACA+TGG | + | chr5.2:60585283-60585302 | None:intergenic | 30.0% | |
AGTTCTATATATGTGGTGTA+TGG | + | chr5.2:60586736-60586755 | None:intergenic | 30.0% | |
AGTTCTTGTACATTCTTATC+TGG | - | chr5.2:60585287-60585306 | MS.gene50200:intron | 30.0% | |
ATGTACCAAAAATCTCTGTT+TGG | - | chr5.2:60587954-60587973 | MS.gene50200:intron | 30.0% | |
ATTCAAATTTCTACTGCTGT+TGG | - | chr5.2:60588017-60588036 | MS.gene50200:intron | 30.0% | |
CCTTTGACATCTCAAAAAAA+TGG | + | chr5.2:60585099-60585118 | None:intergenic | 30.0% | |
CTTCTATATTGTGTTTCGAA+TGG | - | chr5.2:60587438-60587457 | MS.gene50200:intron | 30.0% | |
GAAAGAAGATTCTGTATTTG+TGG | - | chr5.2:60588840-60588859 | MS.gene50200:intron | 30.0% | |
GGAAAATGTATGACATACAA+GGG | + | chr5.2:60585860-60585879 | None:intergenic | 30.0% | |
GTCATCAAAAGTTACTTGTA+AGG | - | chr5.2:60586274-60586293 | MS.gene50200:intron | 30.0% | |
GTTCTTGTACATTCTTATCT+GGG | - | chr5.2:60585288-60585307 | MS.gene50200:intron | 30.0% | |
GTTGTAATTGATCAGTGAAA+TGG | + | chr5.2:60584685-60584704 | None:intergenic | 30.0% | |
TAATATAGACAAGATCTACC+TGG | + | chr5.2:60587308-60587327 | None:intergenic | 30.0% | |
TACCATTAACTATGGTATGT+GGG | + | chr5.2:60586209-60586228 | None:intergenic | 30.0% | |
TATATCACATTCTTGGTTGA+GGG | + | chr5.2:60584530-60584549 | None:intergenic | 30.0% | |
TGATGAGTTATGTGATGAAT+GGG | - | chr5.2:60585348-60585367 | MS.gene50200:intron | 30.0% | |
TGCATATCTTTATCAAGAGA+AGG | + | chr5.2:60585391-60585410 | None:intergenic | 30.0% | |
TGTACCAAAAATCTCTGTTT+GGG | - | chr5.2:60587955-60587974 | MS.gene50200:intron | 30.0% | |
TGTCTGATGACATTTATGTT+GGG | - | chr5.2:60586701-60586720 | MS.gene50200:CDS | 30.0% | |
TTACCATTAACTATGGTATG+TGG | + | chr5.2:60586210-60586229 | None:intergenic | 30.0% | |
TTATATCACATTCTTGGTTG+AGG | + | chr5.2:60584531-60584550 | None:intergenic | 30.0% | |
TTATCAAGAGAAGGAATAAG+CGG | + | chr5.2:60585382-60585401 | None:intergenic | 30.0% | |
TTGAGATTAAAGAAGTCAAC+GGG | - | chr5.2:60588695-60588714 | MS.gene50200:intron | 30.0% | |
TTGATGAGTTATGTGATGAA+TGG | - | chr5.2:60585347-60585366 | MS.gene50200:intron | 30.0% | |
TTGTCTGATGACATTTATGT+TGG | - | chr5.2:60586700-60586719 | MS.gene50200:CDS | 30.0% | |
! | AAATAAACAATTGGTGACTC+TGG | + | chr5.2:60588677-60588696 | None:intergenic | 30.0% |
! | ACACTAATTTTCTTTATCGC+AGG | + | chr5.2:60585794-60585813 | None:intergenic | 30.0% |
! | ATTACAATGTTAGGGCTTTT+TGG | - | chr5.2:60584567-60584586 | MS.gene50200:intron | 30.0% |
! | ATTCCTGCTTTCTCTAAAAA+AGG | - | chr5.2:60586613-60586632 | MS.gene50200:intron | 30.0% |
! | GGTGATTACATTTTATCTTG+TGG | - | chr5.2:60585434-60585453 | MS.gene50200:intron | 30.0% |
! | GTTTTATGGAACAATTGGTA+AGG | - | chr5.2:60586431-60586450 | MS.gene50200:intron | 30.0% |
! | TCTTTGTTTGTGATGCATTT+AGG | - | chr5.2:60584122-60584141 | MS.gene50200:CDS | 30.0% |
!! | ATAAGATTGTTTGTTTCTGC+AGG | - | chr5.2:60588910-60588929 | MS.gene50200:CDS | 30.0% |
!! | ATATGGTGTTACTATTAGAC+TGG | - | chr5.2:60587617-60587636 | MS.gene50200:intron | 30.0% |
!! | CAATTTTAATGTTTCTTCCG+GGG | + | chr5.2:60586802-60586821 | None:intergenic | 30.0% |
!! | GTATTTTAAGCACAATGACA+TGG | - | chr5.2:60587194-60587213 | MS.gene50200:intron | 30.0% |
!! | TAAGATTGTTTGTTTCTGCA+GGG | - | chr5.2:60588911-60588930 | MS.gene50200:CDS | 30.0% |
!! | TTGAATTTTTGTTGTCCTGA+TGG | + | chr5.2:60584289-60584308 | None:intergenic | 30.0% |
!!! | CCATTTTTTTGAGATGTCAA+AGG | - | chr5.2:60585096-60585115 | MS.gene50200:intron | 30.0% |
!!! | GTATTTTTTAACAGGGATGA+AGG | - | chr5.2:60587120-60587139 | MS.gene50200:intron | 30.0% |
!!! | TAGTTCACTAGAAGTACTTT+TGG | - | chr5.2:60585984-60586003 | MS.gene50200:intron | 30.0% |
!!! | TATTTTTAAGGCGAAGTGAT+TGG | - | chr5.2:60588230-60588249 | MS.gene50200:intron | 30.0% |
!!! | TGGTTGTCTTCTAACTTTTT+TGG | - | chr5.2:60585223-60585242 | MS.gene50200:CDS | 30.0% |
AAAAATCTCTGTTTGGGTGT+GGG | - | chr5.2:60587961-60587980 | MS.gene50200:intron | 35.0% | |
AAAATACACCAGAACAGCAT+TGG | - | chr5.2:60584625-60584644 | MS.gene50200:intron | 35.0% | |
AAATACACCAGAACAGCATT+GGG | - | chr5.2:60584626-60584645 | MS.gene50200:intron | 35.0% | |
AACAGCAAGATAGCAAATAG+AGG | + | chr5.2:60584779-60584798 | None:intergenic | 35.0% | |
AACATTGCTGTGTTATGGAA+AGG | - | chr5.2:60588439-60588458 | MS.gene50200:intron | 35.0% | |
AATTGTTCCATAAAACCCAC+GGG | + | chr5.2:60586427-60586446 | None:intergenic | 35.0% | |
ACAAGCACACCAAAAATTTG+AGG | - | chr5.2:60587256-60587275 | MS.gene50200:intron | 35.0% | |
ACAGCAAGATAGCAAATAGA+GGG | + | chr5.2:60584778-60584797 | None:intergenic | 35.0% | |
AGAACAACATTGCTGTGTTA+TGG | - | chr5.2:60588434-60588453 | MS.gene50200:intron | 35.0% | |
AGAACTAACATGGAACACTA+TGG | + | chr5.2:60585273-60585292 | None:intergenic | 35.0% | |
AGGCATCTGAATCATTGAAA+AGG | - | chr5.2:60588956-60588975 | MS.gene50200:CDS | 35.0% | |
AGTCTCTTAACACTTCTTTC+TGG | + | chr5.2:60584352-60584371 | None:intergenic | 35.0% | |
ATATCACATTCTTGGTTGAG+GGG | + | chr5.2:60584529-60584548 | None:intergenic | 35.0% | |
ATCTACCACTGTTATCAATC+CGG | + | chr5.2:60584840-60584859 | None:intergenic | 35.0% | |
ATCTATAACTCTTGCACTTC+CGG | + | chr5.2:60588132-60588151 | None:intergenic | 35.0% | |
ATCTTATTCCTACAGGCAAA+CGG | + | chr5.2:60588897-60588916 | None:intergenic | 35.0% | |
CAATTGTTCCATAAAACCCA+CGG | + | chr5.2:60586428-60586447 | None:intergenic | 35.0% | |
CCATAGTTATTGCAAGGTTA+AGG | - | chr5.2:60585674-60585693 | MS.gene50200:intron | 35.0% | |
CCTTAACCTTGCAATAACTA+TGG | + | chr5.2:60585677-60585696 | None:intergenic | 35.0% | |
CGGAAAATGTATGACATACA+AGG | + | chr5.2:60585861-60585880 | None:intergenic | 35.0% | |
GAAAACCTACCAATATGCTA+GGG | + | chr5.2:60585636-60585655 | None:intergenic | 35.0% | |
GAATGCATTAACGGTAAATC+TGG | + | chr5.2:60588001-60588020 | None:intergenic | 35.0% | |
GGCATCTGAATCATTGAAAA+GGG | - | chr5.2:60588957-60588976 | MS.gene50200:CDS | 35.0% | |
GTTATCAATCTCTTGGATAG+TGG | - | chr5.2:60584407-60584426 | MS.gene50200:CDS | 35.0% | |
GTTGAAAACACAGACATTAG+CGG | + | chr5.2:60588291-60588310 | None:intergenic | 35.0% | |
TATCAATCCGGAATAGAAGA+CGG | + | chr5.2:60584828-60584847 | None:intergenic | 35.0% | |
TCCATTTAAGAAAGTAGCAG+CGG | + | chr5.2:60588480-60588499 | None:intergenic | 35.0% | |
TGATAACAGTGGTAGATAGT+GGG | - | chr5.2:60584843-60584862 | MS.gene50200:intron | 35.0% | |
TTAAAGAACGACATTGCGAT+AGG | + | chr5.2:60587645-60587664 | None:intergenic | 35.0% | |
TTTCCTCAGCAAACTATCTT+GGG | - | chr5.2:60586244-60586263 | MS.gene50200:intron | 35.0% | |
! | ATTCTTATCTGGGATTCATC+AGG | - | chr5.2:60585298-60585317 | MS.gene50200:intron | 35.0% |
! | CAGTGCTTCTAGAAAGATAA+AGG | + | chr5.2:60587170-60587189 | None:intergenic | 35.0% |
! | CTATTTCTTGAACACTGCTT+TGG | - | chr5.2:60586320-60586339 | MS.gene50200:intron | 35.0% |
! | TTGATAACAGTGGTAGATAG+TGG | - | chr5.2:60584842-60584861 | MS.gene50200:intron | 35.0% |
! | TTTCTTACTTTCGGTTTTGC+TGG | - | chr5.2:60588789-60588808 | MS.gene50200:intron | 35.0% |
! | TTTTCCTCAGCAAACTATCT+TGG | - | chr5.2:60586243-60586262 | MS.gene50200:intron | 35.0% |
!! | AAATATGGTGTTGGTTCATG+TGG | - | chr5.2:60586399-60586418 | MS.gene50200:intron | 35.0% |
!! | ACTTCTGCTCTAGAGAAATA+TGG | - | chr5.2:60586384-60586403 | MS.gene50200:intron | 35.0% |
!! | CAAAGGTGTCCAATGAAAAT+AGG | - | chr5.2:60585113-60585132 | MS.gene50200:intron | 35.0% |
!! | CTATTTCTGGTGAGATAGTA+TGG | - | chr5.2:60587536-60587555 | MS.gene50200:intron | 35.0% |
!! | GGCATTCATCTACTACTTTT+TGG | + | chr5.2:60585168-60585187 | None:intergenic | 35.0% |
!! | GTTTTGATCATGAAAATGGG+TGG | + | chr5.2:60585200-60585219 | None:intergenic | 35.0% |
!!! | CAGAGATTTTTGGTACATAC+TGG | + | chr5.2:60587952-60587971 | None:intergenic | 35.0% |
!!! | GGTTACTGCATTAGTTTTGT+AGG | - | chr5.2:60588978-60588997 | MS.gene50200:CDS | 35.0% |
!!! | TCTCCTTTTTTAGAGAAAGC+AGG | + | chr5.2:60586619-60586638 | None:intergenic | 35.0% |
!!! | TCTTGCTGTTGCATTTTTTG+TGG | - | chr5.2:60584789-60584808 | MS.gene50200:intron | 35.0% |
!!! | TGGATGGTTTTATTCAGATC+CGG | - | chr5.2:60586759-60586778 | MS.gene50200:intron | 35.0% |
AAAACACAGACATTAGCGGA+GGG | + | chr5.2:60588287-60588306 | None:intergenic | 40.0% | |
AAGTGTTAAGAGACTCACAG+TGG | - | chr5.2:60584357-60584376 | MS.gene50200:CDS | 40.0% | |
AATTTCTTATGCAGTGCTGC+TGG | - | chr5.2:60586183-60586202 | MS.gene50200:intron | 40.0% | |
ACAAATGACACTACCATACC+TGG | + | chr5.2:60588157-60588176 | None:intergenic | 40.0% | |
ACTATGGCTACCATGTAAGA+AGG | + | chr5.2:60585661-60585680 | None:intergenic | 40.0% | |
ACTTGTCAACTTCACTGCTA+TGG | - | chr5.2:60585566-60585585 | MS.gene50200:intron | 40.0% | |
AGATCTTATAACGGCTGCTA+TGG | - | chr5.2:60588073-60588092 | MS.gene50200:intron | 40.0% | |
ATCAATCCGGAATAGAAGAC+GGG | + | chr5.2:60584827-60584846 | None:intergenic | 40.0% | |
ATTGTTCCATAAAACCCACG+GGG | + | chr5.2:60586426-60586445 | None:intergenic | 40.0% | |
CAAAAATCTCTGTTTGGGTG+TGG | - | chr5.2:60587960-60587979 | MS.gene50200:intron | 40.0% | |
CACAGCAATTCTTACACGTT+CGG | + | chr5.2:60588759-60588778 | None:intergenic | 40.0% | |
CACAGTCAAGATGTACATCT+GGG | + | chr5.2:60586516-60586535 | None:intergenic | 40.0% | |
CACTGCTATCTAATATGCCA+TGG | + | chr5.2:60584442-60584461 | None:intergenic | 40.0% | |
CTATCTAATATGCCATGGTG+CGG | + | chr5.2:60584437-60584456 | None:intergenic | 40.0% | |
GAGTTATAGATCACCAGGTA+TGG | - | chr5.2:60588141-60588160 | MS.gene50200:intron | 40.0% | |
GATAGTAATAAAACCAGGGG+TGG | + | chr5.2:60586997-60587016 | None:intergenic | 40.0% | |
GATCTTATAACGGCTGCTAT+GGG | - | chr5.2:60588074-60588093 | MS.gene50200:intron | 40.0% | |
GATTACAGTCGAAGTGTAAG+TGG | + | chr5.2:60584657-60584676 | None:intergenic | 40.0% | |
GCAAACTATCTTGGGCTTAT+AGG | - | chr5.2:60586252-60586271 | MS.gene50200:intron | 40.0% | |
GCATTAACGGTAAATCTGGT+GGG | + | chr5.2:60587997-60588016 | None:intergenic | 40.0% | |
GGAAAACCTACCAATATGCT+AGG | + | chr5.2:60585637-60585656 | None:intergenic | 40.0% | |
GGTATAGACAATCACCCAAA+AGG | + | chr5.2:60584153-60584172 | None:intergenic | 40.0% | |
GGTATCAAAAATCTTAGGGC+CGG | + | chr5.2:60586781-60586800 | None:intergenic | 40.0% | |
TAGGATTACAGTTTGCACTC+TGG | - | chr5.2:60586069-60586088 | MS.gene50200:intron | 40.0% | |
TCACAGTCAAGATGTACATC+TGG | + | chr5.2:60586517-60586536 | None:intergenic | 40.0% | |
TGCAAGAGTTATAGATCACC+AGG | - | chr5.2:60588136-60588155 | MS.gene50200:intron | 40.0% | |
TGCATTAACGGTAAATCTGG+TGG | + | chr5.2:60587998-60588017 | None:intergenic | 40.0% | |
TGGTAGCCATAGTTATTGCA+AGG | - | chr5.2:60585668-60585687 | MS.gene50200:intron | 40.0% | |
TTCAGAGTCTGATCTTCACA+AGG | - | chr5.2:60588936-60588955 | MS.gene50200:CDS | 40.0% | |
TTGCTGTGTTATGGAAAGGT+AGG | - | chr5.2:60588443-60588462 | MS.gene50200:intron | 40.0% | |
TTGGATGAGAGCAACTCATT+TGG | - | chr5.2:60587880-60587899 | MS.gene50200:intron | 40.0% | |
TTGGGTGATTGTCTATACCA+AGG | - | chr5.2:60584154-60584173 | MS.gene50200:CDS | 40.0% | |
! | AGGTTTTCCACCTTCTTACA+TGG | - | chr5.2:60585648-60585667 | MS.gene50200:intron | 40.0% |
! | CACACCCAAACAGAGATTTT+TGG | + | chr5.2:60587962-60587981 | None:intergenic | 40.0% |
! | CCCTAAGATTTTTGATACCC+CGG | - | chr5.2:60586782-60586801 | MS.gene50200:intron | 40.0% |
! | CCGGGGTATCAAAAATCTTA+GGG | + | chr5.2:60586785-60586804 | None:intergenic | 40.0% |
! | CCTAGGGCAACATTTTCTTA+GGG | + | chr5.2:60586946-60586965 | None:intergenic | 40.0% |
! | CTAGGGCAACATTTTCTTAG+GGG | + | chr5.2:60586945-60586964 | None:intergenic | 40.0% |
! | CTATTCCGGATTGATAACAG+TGG | - | chr5.2:60584832-60584851 | MS.gene50200:intron | 40.0% |
! | TCCGGGGTATCAAAAATCTT+AGG | + | chr5.2:60586786-60586805 | None:intergenic | 40.0% |
!! | ACCGCTGCTACTTTCTTAAA+TGG | - | chr5.2:60588476-60588495 | MS.gene50200:intron | 40.0% |
!! | ATGTTAGGGCTTTTTGGTCT+TGG | - | chr5.2:60584573-60584592 | MS.gene50200:intron | 40.0% |
!! | CAATATTTTCAAGCAGGCGT+AGG | + | chr5.2:60588736-60588755 | None:intergenic | 40.0% |
!! | CGTGGGTTTTATGGAACAAT+TGG | - | chr5.2:60586426-60586445 | MS.gene50200:intron | 40.0% |
!! | GCTCTAGAGAAATATGGTGT+TGG | - | chr5.2:60586390-60586409 | MS.gene50200:intron | 40.0% |
!! | GTTCGGCAATATTTTCAAGC+AGG | + | chr5.2:60588742-60588761 | None:intergenic | 40.0% |
AGAGAAGGAATAAGCGGTTG+TGG | + | chr5.2:60585376-60585395 | None:intergenic | 45.0% | |
AGAGGTCTCACTGAACACTA+TGG | - | chr5.2:60587922-60587941 | MS.gene50200:intron | 45.0% | |
ATGAGCCCTAGCATATTGGT+AGG | - | chr5.2:60585628-60585647 | MS.gene50200:intron | 45.0% | |
ATGGCTACCATGTAAGAAGG+TGG | + | chr5.2:60585658-60585677 | None:intergenic | 45.0% | |
ATTGCAGCGCTTGCAAGATA+CGG | + | chr5.2:60588364-60588383 | None:intergenic | 45.0% | |
CATCAAGTATGCAGTCGACA+TGG | + | chr5.2:60585025-60585044 | None:intergenic | 45.0% | |
CCCTAAGAAAATGTTGCCCT+AGG | - | chr5.2:60586943-60586962 | MS.gene50200:intron | 45.0% | |
GAAAACACAGACATTAGCGG+AGG | + | chr5.2:60588288-60588307 | None:intergenic | 45.0% | |
GAAAATGGGTGGACAGACAA+AGG | + | chr5.2:60585189-60585208 | None:intergenic | 45.0% | |
GGCCCACATACCATAGTTAA+TGG | - | chr5.2:60586204-60586223 | MS.gene50200:intron | 45.0% | |
TACAGTCGAAGTGTAAGTGG+AGG | + | chr5.2:60584654-60584673 | None:intergenic | 45.0% | |
TAGACAATCACCCAAAAGGC+AGG | + | chr5.2:60584149-60584168 | None:intergenic | 45.0% | |
TAGGATGAGCCCTAGCATAT+TGG | - | chr5.2:60585624-60585643 | MS.gene50200:intron | 45.0% | |
TGGTGAACAAGCAGCTCTAT+GGG | + | chr5.2:60585148-60585167 | None:intergenic | 45.0% | |
TGTTGTTGAAGCTCTCTACC+AGG | - | chr5.2:60587287-60587306 | MS.gene50200:intron | 45.0% | |
TTACAGCGATTGAGTAGCTC+TGG | - | chr5.2:60588313-60588332 | MS.gene50200:intron | 45.0% | |
TTGGTGAACAAGCAGCTCTA+TGG | + | chr5.2:60585149-60585168 | None:intergenic | 45.0% | |
TTGTGATGATTGAGGGAGAC+TGG | - | chr5.2:60585959-60585978 | MS.gene50200:intron | 45.0% | |
TTTAGGGGTTGAGTCTACAG+AGG | + | chr5.2:60584215-60584234 | None:intergenic | 45.0% | |
! | AACACTATTGCTGCTTGCTC+TGG | - | chr5.2:60587665-60587684 | MS.gene50200:intron | 45.0% |
! | AGCAGGAATAGCACTGAACA+TGG | + | chr5.2:60586602-60586621 | None:intergenic | 45.0% |
! | AGGAATAGCACTGAACATGG+TGG | + | chr5.2:60586599-60586618 | None:intergenic | 45.0% |
! | GCCTAGGGCAACATTTTCTT+AGG | + | chr5.2:60586947-60586966 | None:intergenic | 45.0% |
! | TTTGGTGTGCTTGGAAGTTC+TGG | - | chr5.2:60587898-60587917 | MS.gene50200:intron | 45.0% |
!! | AAGCCCAAGATAGTTTGCTG+AGG | + | chr5.2:60586250-60586269 | None:intergenic | 45.0% |
!! | AGCAACTCATTTGGTGTGCT+TGG | - | chr5.2:60587889-60587908 | MS.gene50200:intron | 45.0% |
!! | GCATTTAGGACCTGCCTTTT+GGG | - | chr5.2:60584136-60584155 | MS.gene50200:CDS | 45.0% |
!! | TGCATTTAGGACCTGCCTTT+TGG | - | chr5.2:60584135-60584154 | MS.gene50200:CDS | 45.0% |
!! | ATTAAGTAAAAATAATAATT+TGG | - | chr5.2:60586917-60586936 | MS.gene50200:intron | 5.0% |
!!! | AAATTAAGAATTTATTTTTA+AGG | - | chr5.2:60588218-60588237 | MS.gene50200:intron | 5.0% |
!!! | TATTTTTAAGTATATATTAT+AGG | + | chr5.2:60584261-60584280 | None:intergenic | 5.0% |
ACAAGACTGCCGTTGTAGTG+GGG | + | chr5.2:60585724-60585743 | None:intergenic | 50.0% | |
ACAGAAGGAGGATTCTGCAC+CGG | - | chr5.2:60588110-60588129 | MS.gene50200:intron | 50.0% | |
ACTACGCCCGTCTTCTATTC+CGG | - | chr5.2:60584818-60584837 | MS.gene50200:intron | 50.0% | |
ATTGGCTACTGCAGGGTTGT+TGG | - | chr5.2:60588622-60588641 | MS.gene50200:CDS | 50.0% | |
CAAGATGTACATCTGGGCAG+AGG | + | chr5.2:60586510-60586529 | None:intergenic | 50.0% | |
CACAAGACTGCCGTTGTAGT+GGG | + | chr5.2:60585725-60585744 | None:intergenic | 50.0% | |
GCAGGGTTGTTGGAAATACC+AGG | - | chr5.2:60588632-60588651 | MS.gene50200:intron | 50.0% | |
GTCCACTGGGGAATACAGAA+TGG | - | chr5.2:60587144-60587163 | MS.gene50200:intron | 50.0% | |
TGATTGTGATCGTGTGCTGC+AGG | - | chr5.2:60588040-60588059 | MS.gene50200:intron | 50.0% | |
TGTAATCACCTCTCCAGCAC+TGG | + | chr5.2:60585424-60585443 | None:intergenic | 50.0% | |
! | AAAACCAGGGGTGGCCTTAA+GGG | + | chr5.2:60586988-60587007 | None:intergenic | 50.0% |
! | TAAAACCAGGGGTGGCCTTA+AGG | + | chr5.2:60586989-60587008 | None:intergenic | 50.0% |
!! | GACATGCATTGGCTACTGCA+GGG | - | chr5.2:60588615-60588634 | MS.gene50200:CDS | 50.0% |
!! | GTGCTTGGAAGTTCTGGAAG+AGG | - | chr5.2:60587904-60587923 | MS.gene50200:intron | 50.0% |
!! | TGACATGCATTGGCTACTGC+AGG | - | chr5.2:60588614-60588633 | MS.gene50200:CDS | 50.0% |
ACAGGGATGAAGGAGTCCAC+TGG | - | chr5.2:60587130-60587149 | MS.gene50200:intron | 55.0% | |
AGGGATGAAGGAGTCCACTG+GGG | - | chr5.2:60587132-60587151 | MS.gene50200:intron | 55.0% | |
CAGGGATGAAGGAGTCCACT+GGG | - | chr5.2:60587131-60587150 | MS.gene50200:intron | 55.0% | |
CTACCTGGACCCCACTACAA+CGG | - | chr5.2:60585712-60585731 | MS.gene50200:intron | 55.0% | |
CTATAGCCTATGGCGGCTAG+GGG | + | chr5.2:60584506-60584525 | None:intergenic | 55.0% | |
CTGTCAGTTCAGACCCTACC+TGG | - | chr5.2:60585697-60585716 | MS.gene50200:intron | 55.0% | |
GCACAAGACTGCCGTTGTAG+TGG | + | chr5.2:60585726-60585745 | None:intergenic | 55.0% | |
GCACTATGAACCACCAGTGC+TGG | - | chr5.2:60585408-60585427 | MS.gene50200:intron | 55.0% | |
GCTATAGCCTATGGCGGCTA+GGG | + | chr5.2:60584507-60584526 | None:intergenic | 55.0% | |
GGAATAGAAGACGGGCGTAG+TGG | + | chr5.2:60584819-60584838 | None:intergenic | 55.0% | |
GGCCATTCTGTATTCCCCAG+TGG | + | chr5.2:60587149-60587168 | None:intergenic | 55.0% | |
GGTGCAGAATCCTCCTTCTG+TGG | + | chr5.2:60588111-60588130 | None:intergenic | 55.0% | |
GGTTGAGGGGCTATAGCCTA+TGG | + | chr5.2:60584516-60584535 | None:intergenic | 55.0% | |
TGACTCGCAATCGTGAAGCC+TGG | + | chr5.2:60588653-60588672 | None:intergenic | 55.0% | |
TGAGGGGCTATAGCCTATGG+CGG | + | chr5.2:60584513-60584532 | None:intergenic | 55.0% | |
TTGGTTCATGTGGTCCCCGT+GGG | - | chr5.2:60586409-60586428 | MS.gene50200:intron | 55.0% | |
! | AATCACCTCTCCAGCACTGG+TGG | + | chr5.2:60585421-60585440 | None:intergenic | 55.0% |
! | ACAACGGCAGTCTTGTGCAC+TGG | - | chr5.2:60585728-60585747 | MS.gene50200:intron | 55.0% |
! | ATGAACCACCAGTGCTGGAG+AGG | - | chr5.2:60585413-60585432 | MS.gene50200:intron | 55.0% |
! | GTTGTAGTGGGGTCCAGGTA+GGG | + | chr5.2:60585713-60585732 | None:intergenic | 55.0% |
! | TGTGGTCCCCGTGGGTTTTA+TGG | - | chr5.2:60586417-60586436 | MS.gene50200:intron | 55.0% |
!! | GACAAGTGCCGTTTGCCTGT+AGG | - | chr5.2:60588886-60588905 | MS.gene50200:intron | 55.0% |
GCAGCGCTTGCAAGATACGG+AGG | + | chr5.2:60588361-60588380 | None:intergenic | 60.0% | |
GGAGGAGCCCAATGCTGTTC+TGG | + | chr5.2:60584636-60584655 | None:intergenic | 60.0% | |
GGCTATAGCCTATGGCGGCT+AGG | + | chr5.2:60584508-60584527 | None:intergenic | 60.0% | |
! | CGTTGTAGTGGGGTCCAGGT+AGG | + | chr5.2:60585714-60585733 | None:intergenic | 60.0% |
! | GATAGTGGCTCACCGCACCA+TGG | - | chr5.2:60584422-60584441 | MS.gene50200:CDS | 60.0% |
! | GTTGGTTCATGTGGTCCCCG+TGG | - | chr5.2:60586408-60586427 | MS.gene50200:intron | 60.0% |
AAGCAGCCCCTAGCCGCCAT+AGG | - | chr5.2:60584497-60584516 | MS.gene50200:intron | 65.0% | |
CTCACCCTTAAGGCCACCCC+TGG | - | chr5.2:60586981-60587000 | MS.gene50200:intron | 65.0% | |
GCCTTAAGGGTGAGCGGGAG+GGG | + | chr5.2:60586975-60586994 | None:intergenic | 65.0% | |
GGCCTTAAGGGTGAGCGGGA+GGG | + | chr5.2:60586976-60586995 | None:intergenic | 65.0% | |
TATGGCGGCTAGGGGCTGCT+TGG | + | chr5.2:60584498-60584517 | None:intergenic | 65.0% | |
TTAAGGGTGAGCGGGAGGGG+CGG | + | chr5.2:60586972-60586991 | None:intergenic | 65.0% | |
! | CTGCCGTTGTAGTGGGGTCC+AGG | + | chr5.2:60585718-60585737 | None:intergenic | 65.0% |
! | GGGGTGGCCTTAAGGGTGAG+CGG | + | chr5.2:60586981-60587000 | None:intergenic | 65.0% |
! | GGGTGGCCTTAAGGGTGAGC+GGG | + | chr5.2:60586980-60586999 | None:intergenic | 65.0% |
! | TGGCCTTAAGGGTGAGCGGG+AGG | + | chr5.2:60586977-60586996 | None:intergenic | 65.0% |
GCCCCTCCCGCTCACCCTTA+AGG | - | chr5.2:60586971-60586990 | MS.gene50200:intron | 70.0% | |
! | AGCGGGAGGGGCGGCAGCCT+AGG | + | chr5.2:60586963-60586982 | None:intergenic | 80.0% |
! | GCGGGAGGGGCGGCAGCCTA+GGG | + | chr5.2:60586962-60586981 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 60584101 | 60588999 | 60584101 | ID=MS.gene50200 |
chr5.2 | mRNA | 60584101 | 60588999 | 60584101 | ID=MS.gene50200.t1;Parent=MS.gene50200 |
chr5.2 | exon | 60588903 | 60588999 | 60588903 | ID=MS.gene50200.t1.exon1;Parent=MS.gene50200.t1 |
chr5.2 | CDS | 60588903 | 60588999 | 60588903 | ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1 |
chr5.2 | exon | 60588559 | 60588647 | 60588559 | ID=MS.gene50200.t1.exon2;Parent=MS.gene50200.t1 |
chr5.2 | CDS | 60588559 | 60588647 | 60588559 | ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1 |
chr5.2 | exon | 60587666 | 60587757 | 60587666 | ID=MS.gene50200.t1.exon3;Parent=MS.gene50200.t1 |
chr5.2 | CDS | 60587666 | 60587757 | 60587666 | ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1 |
chr5.2 | exon | 60586810 | 60586903 | 60586810 | ID=MS.gene50200.t1.exon4;Parent=MS.gene50200.t1 |
chr5.2 | CDS | 60586810 | 60586903 | 60586810 | ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1 |
chr5.2 | exon | 60586653 | 60586725 | 60586653 | ID=MS.gene50200.t1.exon5;Parent=MS.gene50200.t1 |
chr5.2 | CDS | 60586653 | 60586725 | 60586653 | ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1 |
chr5.2 | exon | 60586450 | 60586582 | 60586450 | ID=MS.gene50200.t1.exon6;Parent=MS.gene50200.t1 |
chr5.2 | CDS | 60586450 | 60586582 | 60586450 | ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1 |
chr5.2 | exon | 60585792 | 60585966 | 60585792 | ID=MS.gene50200.t1.exon7;Parent=MS.gene50200.t1 |
chr5.2 | CDS | 60585792 | 60585966 | 60585792 | ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1 |
chr5.2 | exon | 60585149 | 60585289 | 60585149 | ID=MS.gene50200.t1.exon8;Parent=MS.gene50200.t1 |
chr5.2 | CDS | 60585149 | 60585289 | 60585149 | ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1 |
chr5.2 | exon | 60584943 | 60585038 | 60584943 | ID=MS.gene50200.t1.exon9;Parent=MS.gene50200.t1 |
chr5.2 | CDS | 60584943 | 60585038 | 60584943 | ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1 |
chr5.2 | exon | 60584640 | 60584781 | 60584640 | ID=MS.gene50200.t1.exon10;Parent=MS.gene50200.t1 |
chr5.2 | CDS | 60584640 | 60584781 | 60584640 | ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1 |
chr5.2 | exon | 60584337 | 60584464 | 60584337 | ID=MS.gene50200.t1.exon11;Parent=MS.gene50200.t1 |
chr5.2 | CDS | 60584337 | 60584464 | 60584337 | ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1 |
chr5.2 | exon | 60584101 | 60584265 | 60584101 | ID=MS.gene50200.t1.exon12;Parent=MS.gene50200.t1 |
chr5.2 | CDS | 60584101 | 60584265 | 60584101 | ID=cds.MS.gene50200.t1;Parent=MS.gene50200.t1 |
Gene Sequence |
Protein sequence |