Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20608.t1 | XP_013450874.1 | 88.4 | 579 | 62 | 3 | 1 | 576 | 1 | 577 | 2.50E-294 | 1020.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20608.t1 | Q4F883 | 37.8 | 574 | 288 | 19 | 8 | 569 | 18 | 534 | 6.3e-84 | 313.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20608.t1 | A0A072U5B0 | 88.4 | 579 | 62 | 3 | 1 | 576 | 1 | 577 | 1.8e-294 | 1020.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049499 | MS.gene20608 | 0.802079 | 6.65E-49 | -1.69E-46 |
MS.gene051184 | MS.gene20608 | 0.807564 | 4.75E-50 | -1.69E-46 |
MS.gene051490 | MS.gene20608 | 0.808029 | 3.79E-50 | -1.69E-46 |
MS.gene051541 | MS.gene20608 | 0.824233 | 9.02E-54 | -1.69E-46 |
MS.gene051831 | MS.gene20608 | 0.810482 | 1.13E-50 | -1.69E-46 |
MS.gene051832 | MS.gene20608 | 0.803278 | 3.76E-49 | -1.69E-46 |
MS.gene052118 | MS.gene20608 | 0.816227 | 6.16E-52 | -1.69E-46 |
MS.gene052493 | MS.gene20608 | 0.848419 | 6.20E-60 | -1.69E-46 |
MS.gene052685 | MS.gene20608 | 0.814539 | 1.46E-51 | -1.69E-46 |
MS.gene053094 | MS.gene20608 | 0.838619 | 2.58E-57 | -1.69E-46 |
MS.gene053726 | MS.gene20608 | 0.802793 | 4.74E-49 | -1.69E-46 |
MS.gene053963 | MS.gene20608 | 0.806031 | 1.00E-49 | -1.69E-46 |
MS.gene054222 | MS.gene20608 | 0.806177 | 9.34E-50 | -1.69E-46 |
MS.gene05439 | MS.gene20608 | 0.807742 | 4.36E-50 | -1.69E-46 |
MS.gene05454 | MS.gene20608 | 0.803759 | 2.99E-49 | -1.69E-46 |
MS.gene054576 | MS.gene20608 | 0.818113 | 2.32E-52 | -1.69E-46 |
MS.gene054892 | MS.gene20608 | 0.89077 | 7.30E-74 | -1.69E-46 |
MS.gene054893 | MS.gene20608 | 0.884275 | 2.20E-71 | -1.69E-46 |
MS.gene055141 | MS.gene20608 | 0.803249 | 3.81E-49 | -1.69E-46 |
MS.gene055147 | MS.gene20608 | 0.820361 | 7.14E-53 | -1.69E-46 |
MS.gene055148 | MS.gene20608 | 0.80263 | 5.12E-49 | -1.69E-46 |
MS.gene055149 | MS.gene20608 | 0.831016 | 2.12E-55 | -1.69E-46 |
MS.gene055226 | MS.gene20608 | 0.812586 | 3.93E-51 | -1.69E-46 |
MS.gene055231 | MS.gene20608 | 0.801338 | 9.44E-49 | -1.69E-46 |
MS.gene055827 | MS.gene20608 | 0.816912 | 4.33E-52 | -1.69E-46 |
MS.gene055864 | MS.gene20608 | 0.819304 | 1.25E-52 | -1.69E-46 |
MS.gene05624 | MS.gene20608 | 0.803242 | 3.83E-49 | -1.69E-46 |
MS.gene056677 | MS.gene20608 | 0.818861 | 1.57E-52 | -1.69E-46 |
MS.gene058095 | MS.gene20608 | 0.83581 | 1.35E-56 | -1.69E-46 |
MS.gene058159 | MS.gene20608 | 0.8264 | 2.77E-54 | -1.69E-46 |
MS.gene058429 | MS.gene20608 | 0.851881 | 6.65E-61 | -1.69E-46 |
MS.gene058592 | MS.gene20608 | 0.804823 | 1.80E-49 | -1.69E-46 |
MS.gene059170 | MS.gene20608 | 0.819484 | 1.13E-52 | -1.69E-46 |
MS.gene05952 | MS.gene20608 | 0.838723 | 2.43E-57 | -1.69E-46 |
MS.gene059774 | MS.gene20608 | 0.872115 | 4.08E-67 | -1.69E-46 |
MS.gene060012 | MS.gene20608 | 0.825527 | 4.46E-54 | -1.69E-46 |
MS.gene060259 | MS.gene20608 | 0.800152 | 1.65E-48 | -1.69E-46 |
MS.gene060412 | MS.gene20608 | 0.81889 | 1.55E-52 | -1.69E-46 |
MS.gene060413 | MS.gene20608 | 0.829749 | 4.32E-55 | -1.69E-46 |
MS.gene060697 | MS.gene20608 | 0.870493 | 1.40E-66 | -1.69E-46 |
MS.gene060840 | MS.gene20608 | 0.805117 | 1.56E-49 | -1.69E-46 |
MS.gene060932 | MS.gene20608 | 0.828666 | 7.92E-55 | -1.69E-46 |
MS.gene061047 | MS.gene20608 | 0.832698 | 8.15E-56 | -1.69E-46 |
MS.gene061188 | MS.gene20608 | 0.81379 | 2.14E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20608.t1 | MTR_6g007975 | 88.428 | 579 | 62 | 3 | 1 | 576 | 1 | 577 | 0.0 | 1047 |
MS.gene20608.t1 | MTR_6g008015 | 84.256 | 578 | 89 | 1 | 1 | 576 | 1 | 578 | 0.0 | 1003 |
MS.gene20608.t1 | MTR_6g008055 | 74.658 | 584 | 131 | 5 | 1 | 576 | 1 | 575 | 0.0 | 855 |
MS.gene20608.t1 | MTR_6g007985 | 83.444 | 453 | 75 | 0 | 124 | 576 | 49 | 501 | 0.0 | 791 |
MS.gene20608.t1 | MTR_3g467360 | 64.433 | 582 | 194 | 6 | 1 | 576 | 1 | 575 | 0.0 | 730 |
MS.gene20608.t1 | MTR_3g467360 | 64.410 | 576 | 192 | 6 | 7 | 576 | 13 | 581 | 0.0 | 722 |
MS.gene20608.t1 | MTR_0286s0040 | 71.991 | 457 | 53 | 5 | 124 | 576 | 2 | 387 | 0.0 | 635 |
MS.gene20608.t1 | MTR_6g007980 | 56.485 | 586 | 233 | 10 | 1 | 575 | 1 | 575 | 0.0 | 605 |
MS.gene20608.t1 | MTR_6g007980 | 56.388 | 587 | 233 | 11 | 1 | 575 | 1 | 576 | 0.0 | 598 |
MS.gene20608.t1 | MTR_6g007980 | 56.293 | 588 | 233 | 11 | 1 | 575 | 1 | 577 | 0.0 | 598 |
MS.gene20608.t1 | MTR_3g467350 | 46.379 | 580 | 209 | 12 | 1 | 576 | 1 | 482 | 5.66e-141 | 417 |
MS.gene20608.t1 | MTR_0286s0050 | 86.508 | 126 | 15 | 1 | 1 | 124 | 1 | 126 | 4.94e-67 | 215 |
MS.gene20608.t1 | MTR_8g494200 | 26.901 | 513 | 295 | 17 | 108 | 547 | 106 | 611 | 1.66e-34 | 138 |
MS.gene20608.t1 | MTR_3g078633 | 24.654 | 361 | 210 | 14 | 208 | 541 | 275 | 600 | 2.22e-18 | 89.4 |
MS.gene20608.t1 | MTR_3g078633 | 24.654 | 361 | 210 | 14 | 208 | 541 | 203 | 528 | 2.93e-18 | 88.6 |
MS.gene20608.t1 | MTR_3g079340 | 24.931 | 361 | 206 | 14 | 208 | 541 | 276 | 598 | 4.19e-18 | 88.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20608.t1 | AT5G14930 | 39.405 | 538 | 257 | 19 | 44 | 569 | 54 | 534 | 1.53e-101 | 318 |
MS.gene20608.t1 | AT3G52430 | 27.804 | 428 | 276 | 11 | 134 | 547 | 112 | 520 | 4.37e-41 | 156 |
MS.gene20608.t1 | AT5G14930 | 44.149 | 188 | 95 | 5 | 44 | 230 | 54 | 232 | 3.01e-36 | 135 |
MS.gene20608.t1 | AT3G48080 | 26.772 | 381 | 190 | 18 | 208 | 540 | 264 | 603 | 5.32e-13 | 72.4 |
MS.gene20608.t1 | AT3G48090 | 23.197 | 513 | 258 | 19 | 134 | 540 | 9 | 491 | 2.10e-12 | 70.1 |
Find 87 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCATTTCATTCAGTTTCT+TGG | 0.135337 | 6.3:-4311231 | None:intergenic |
GAATTTGAGGACTATGTTTA+TGG | 0.172177 | 6.3:+4311758 | MS.gene20608:CDS |
TCAATTATTACATACAATTT+AGG | 0.197479 | 6.3:-4308489 | None:intergenic |
GAAGGATTACAAAGCTATTA+AGG | 0.207034 | 6.3:+4311847 | MS.gene20608:CDS |
GTTTCATCTACTGATCTTAA+AGG | 0.209261 | 6.3:+4308818 | MS.gene20608:CDS |
TGAAAATCCCGAATCAAATT+TGG | 0.210471 | 6.3:+4310271 | MS.gene20608:CDS |
TGACTATAGATTCTTGCTTT+TGG | 0.226808 | 6.3:+4311654 | MS.gene20608:CDS |
ATAAAATACTCGCAAATTAT+TGG | 0.227886 | 6.3:+4311369 | MS.gene20608:CDS |
GTAACTCCATTGATTGTTAC+TGG | 0.255033 | 6.3:+4309978 | MS.gene20608:CDS |
ATCACAAATCACATGCCTTT+TGG | 0.262198 | 6.3:+4310209 | MS.gene20608:CDS |
AGAAGAGGTATTGAATAAAT+TGG | 0.271295 | 6.3:+4311733 | MS.gene20608:CDS |
CCAATTAGAACTACGTGATA+TGG | 0.291561 | 6.3:-4310132 | None:intergenic |
CCATATCACGTAGTTCTAAT+TGG | 0.302095 | 6.3:+4310132 | MS.gene20608:CDS |
TAAAATACTCGCAAATTATT+GGG | 0.305864 | 6.3:+4311370 | MS.gene20608:CDS |
GAATAAATTGGTTGAATTTG+AGG | 0.332286 | 6.3:+4311745 | MS.gene20608:CDS |
TTGAAGATTGGAAGAATCTA+TGG | 0.335987 | 6.3:-4308786 | None:intergenic |
ATTATTTCCAAATTTGATTC+GGG | 0.351999 | 6.3:-4310278 | None:intergenic |
AAAGATTAAGCTGTATGGTT+TGG | 0.357357 | 6.3:+4311916 | MS.gene20608:CDS |
TATTATTTCCAAATTTGATT+CGG | 0.364694 | 6.3:-4310279 | None:intergenic |
GAAATATAGTCGACAATCTC+AGG | 0.372842 | 6.3:+4310357 | MS.gene20608:CDS |
AATGCAGCGCCTTCTCTTTG+AGG | 0.373682 | 6.3:-4311422 | None:intergenic |
AAGATTAAGCTGTATGGTTT+GGG | 0.377569 | 6.3:+4311917 | MS.gene20608:CDS |
CTATGTTTATGGTTTGCTTA+AGG | 0.380016 | 6.3:+4311769 | MS.gene20608:CDS |
ATTTCACATACCAGAATGTT+TGG | 0.383284 | 6.3:-4310485 | None:intergenic |
AGGATTGACACCAAACATTC+TGG | 0.383720 | 6.3:+4310475 | MS.gene20608:CDS |
ATCCAAACACTTCAAAACTT+TGG | 0.383816 | 6.3:+4311553 | MS.gene20608:CDS |
CATTCAGATTCACTTGTGAT+TGG | 0.385490 | 6.3:+4310428 | MS.gene20608:CDS |
AACTTTGGAGGAATGGTTAG+AGG | 0.385579 | 6.3:+4311568 | MS.gene20608:CDS |
TTTCGTAATCGCTGGCTCTT+CGG | 0.387487 | 6.3:+4311443 | MS.gene20608:CDS |
AACCAAACCACTTTGAAGAT+TGG | 0.395980 | 6.3:-4308798 | None:intergenic |
CCATTGATTGTTACTGGAAA+AGG | 0.396055 | 6.3:+4309984 | MS.gene20608:CDS |
TTCCAATCTTCAAAGTGGTT+TGG | 0.400123 | 6.3:+4308796 | MS.gene20608:CDS |
GCTTGATGAGTTGAAATCTA+AGG | 0.406363 | 6.3:+4308943 | MS.gene20608:CDS |
ACATTTGGTTCACCTCTTGT+TGG | 0.416180 | 6.3:+4310089 | MS.gene20608:CDS |
TTTCATCTACTGATCTTAAA+GGG | 0.419208 | 6.3:+4308819 | MS.gene20608:CDS |
CTTTGCCTCAAGAAAATCTC+AGG | 0.419803 | 6.3:-4311806 | None:intergenic |
CGCAAATTATTGGGAAAAGA+TGG | 0.421689 | 6.3:+4311379 | MS.gene20608:CDS |
CGACCACTATGCATCACATT+TGG | 0.424066 | 6.3:+4310074 | MS.gene20608:CDS |
GTAACAATCAATGGAGTTAC+CGG | 0.425650 | 6.3:-4309975 | None:intergenic |
GCTAATTTCATGAATGATGC+TGG | 0.443162 | 6.3:+4311893 | MS.gene20608:CDS |
GTGATGAATAGCCTTGGAAA+AGG | 0.445163 | 6.3:-4310191 | None:intergenic |
ATTTCATTCAGTTTCTTGGA+TGG | 0.448594 | 6.3:-4311227 | None:intergenic |
AAGGCTATAATAGTCAAATC+AGG | 0.452500 | 6.3:-4308755 | None:intergenic |
GTTTCTATTCTGGCTGGAGA+CGG | 0.462569 | 6.3:+4310401 | MS.gene20608:CDS |
AAGGATTACAAAGCTATTAA+GGG | 0.468996 | 6.3:+4311848 | MS.gene20608:CDS |
ACTTCAAAACTTTGGAGGAA+TGG | 0.474242 | 6.3:+4311561 | MS.gene20608:CDS |
AAGGATGTTTCTATTCTGGC+TGG | 0.477821 | 6.3:+4310395 | MS.gene20608:CDS |
CAAACACTTCAAAACTTTGG+AGG | 0.479364 | 6.3:+4311556 | MS.gene20608:CDS |
AAAATGCATGGTCAAAATCA+AGG | 0.483065 | 6.3:+4310314 | MS.gene20608:CDS |
AGAATCTATGGTAGCTTCAA+AGG | 0.487090 | 6.3:-4308774 | None:intergenic |
TTTCTATTCTGGCTGGAGAC+GGG | 0.496043 | 6.3:+4310402 | MS.gene20608:CDS |
CGTAATCGCTGGCTCTTCGG+TGG | 0.499967 | 6.3:+4311446 | MS.gene20608:CDS |
AAAGACATAGTTACAAATGA+TGG | 0.503356 | 6.3:+4308695 | MS.gene20608:CDS |
GAATGAAATGAAGCGACATA+TGG | 0.505636 | 6.3:+4311241 | MS.gene20608:CDS |
CAGTACAAGTAAGAAGAAAG+TGG | 0.517579 | 6.3:+4311622 | MS.gene20608:CDS |
GACATATGGCGCAACTTGAA+TGG | 0.517973 | 6.3:+4311255 | MS.gene20608:CDS |
CAAAAGATAAATGTTCCAAA+AGG | 0.524494 | 6.3:-4310224 | None:intergenic |
ATAGTTACAAATGATGGTGT+TGG | 0.526184 | 6.3:+4308701 | MS.gene20608:CDS |
TGATGAATAGCCTTGGAAAA+GGG | 0.532207 | 6.3:-4310190 | None:intergenic |
GCTGGAAAGATTAAGCTGTA+TGG | 0.534665 | 6.3:+4311911 | MS.gene20608:CDS |
ATTGTTACTGGAAAAGGCCT+CGG | 0.544076 | 6.3:+4309990 | MS.gene20608:CDS |
GCGCTGCATTTCGTAATCGC+TGG | 0.548557 | 6.3:+4311435 | MS.gene20608:CDS |
GAACTGAAGCCTCAAAGAGA+AGG | 0.549949 | 6.3:+4311413 | MS.gene20608:CDS |
TGATTTGTGATGAATAGCCT+TGG | 0.549978 | 6.3:-4310197 | None:intergenic |
TGGAACTACATATAGAAGAA+TGG | 0.555344 | 6.3:+4311466 | MS.gene20608:CDS |
GGCAAAGTAGCTATATGAGT+TGG | 0.559632 | 6.3:+4311822 | MS.gene20608:CDS |
GGATTCAAATTAGATGAGTA+CGG | 0.563198 | 6.3:+4310335 | MS.gene20608:CDS |
TAGCTATATGAGTTGGTGGA+AGG | 0.570581 | 6.3:+4311829 | MS.gene20608:CDS |
AGTTTGCAGTTGCAAGCACT+AGG | 0.576986 | 6.3:+4310455 | MS.gene20608:CDS |
GATTCTTCCAATCTTCAAAG+TGG | 0.578901 | 6.3:+4308791 | MS.gene20608:CDS |
ATGATGGTGTTGGATTGTGT+TGG | 0.590699 | 6.3:+4308711 | MS.gene20608:CDS |
AATTTCTTGTCACCAACAAG+AGG | 0.597556 | 6.3:-4310101 | None:intergenic |
CGAAGTGAAAGACAAAGAAG+AGG | 0.600753 | 6.3:+4311718 | MS.gene20608:CDS |
GTGTCATTAAGAGAGAAAGA+AGG | 0.603100 | 6.3:-4308887 | None:intergenic |
ATACAATTTAGGTTGTGCCA+TGG | 0.603766 | 6.3:-4308478 | None:intergenic |
TATGGTTGCAGATTTAGCAG+TGG | 0.609923 | 6.3:+4308599 | MS.gene20608:intron |
ATATCACTATTAGATAACAT+TGG | 0.614599 | 6.3:+4310038 | MS.gene20608:CDS |
AAAGTAGCTATATGAGTTGG+TGG | 0.616200 | 6.3:+4311825 | MS.gene20608:CDS |
TAGTACTGAGCAATAGCTAG+TGG | 0.632998 | 6.3:-4311494 | None:intergenic |
ATGACATTAAGCAAAATGCA+TGG | 0.634750 | 6.3:+4310302 | MS.gene20608:CDS |
TTTGCCTCAAGAAAATCTCA+GGG | 0.641885 | 6.3:-4311805 | None:intergenic |
ATTGCTCAGTACTATAGAGA+CGG | 0.657739 | 6.3:+4311503 | MS.gene20608:CDS |
GAACCAAATGTGATGCATAG+TGG | 0.665505 | 6.3:-4310077 | None:intergenic |
GTTACTGGAAAAGGCCTCGG+AGG | 0.690166 | 6.3:+4309993 | MS.gene20608:CDS |
GCTCAGTACTATAGAGACGG+TGG | 0.708580 | 6.3:+4311506 | MS.gene20608:CDS |
GTGAAGCTATTGATCCTCCG+AGG | 0.724728 | 6.3:-4310007 | None:intergenic |
TTGCCTCAAGAAAATCTCAG+GGG | 0.763292 | 6.3:-4311804 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAATTAGTAATAAATAATAA+TGG | - | chr6.3:4308523-4308542 | None:intergenic | 10.0% |
!!! | TATTTAGTTAATTTTGTATT+TGG | + | chr6.3:4308574-4308593 | MS.gene20608:intron | 10.0% |
!!! | TTTATCTTTTATTGTTAAAA+GGG | + | chr6.3:4309811-4309830 | MS.gene20608:intron | 10.0% |
!!! | TTTTATCTTTTATTGTTAAA+AGG | + | chr6.3:4309810-4309829 | MS.gene20608:intron | 10.0% |
!! | AAAAATAATCCAAAAAGATA+AGG | - | chr6.3:4308976-4308995 | None:intergenic | 15.0% |
!! | AAAATAATCCAAAAAGATAA+GGG | - | chr6.3:4308975-4308994 | None:intergenic | 15.0% |
!! | TATTATTTCCAAATTTGATT+CGG | - | chr6.3:4310282-4310301 | None:intergenic | 15.0% |
!! | TCAATTATTACATACAATTT+AGG | - | chr6.3:4308492-4308511 | None:intergenic | 15.0% |
!! | TCATTTAATTAAACCATATT+AGG | + | chr6.3:4310537-4310556 | MS.gene20608:intron | 15.0% |
!!! | AAAAACAATTCCTTTTATTA+AGG | - | chr6.3:4309212-4309231 | None:intergenic | 15.0% |
!!! | AAAACAATTCCTTTTATTAA+GGG | - | chr6.3:4309211-4309230 | None:intergenic | 15.0% |
!!! | CTTTTTGGATTATTTTTTTT+AGG | + | chr6.3:4308979-4308998 | MS.gene20608:intron | 15.0% |
!!! | TATTGCTATCTTAAATATTT+TGG | - | chr6.3:4309157-4309176 | None:intergenic | 15.0% |
!!! | TTAATAAAAGGAATTGTTTT+TGG | + | chr6.3:4309211-4309230 | MS.gene20608:intron | 15.0% |
!!! | TTAATTTTGTATTTGGATTA+TGG | + | chr6.3:4308581-4308600 | MS.gene20608:intron | 15.0% |
!! | AAAACAAAAAATCTTCACAT+AGG | + | chr6.3:4311287-4311306 | MS.gene20608:CDS | 20.0% |
!! | AAACAAAAAATCTTCACATA+GGG | + | chr6.3:4311288-4311307 | MS.gene20608:CDS | 20.0% |
!! | AAATAATCCAAAAAGATAAG+GGG | - | chr6.3:4308974-4308993 | None:intergenic | 20.0% |
!! | AACAAAAGATAGAATAAAGT+TGG | + | chr6.3:4310677-4310696 | MS.gene20608:intron | 20.0% |
!! | AAGATAAAATAGAGAGATTA+TGG | - | chr6.3:4309799-4309818 | None:intergenic | 20.0% |
!! | ATAAAATACTCGCAAATTAT+TGG | + | chr6.3:4311369-4311388 | MS.gene20608:CDS | 20.0% |
!! | ATATCACTATTAGATAACAT+TGG | + | chr6.3:4310038-4310057 | MS.gene20608:CDS | 20.0% |
!! | ATTATTTCCAAATTTGATTC+GGG | - | chr6.3:4310281-4310300 | None:intergenic | 20.0% |
!! | TAAAATACTCGCAAATTATT+GGG | + | chr6.3:4311370-4311389 | MS.gene20608:CDS | 20.0% |
!! | TAAACAAAACTAACCTAATA+TGG | - | chr6.3:4310553-4310572 | None:intergenic | 20.0% |
!! | TTAGGATAAAAATATGGAAA+GGG | + | chr6.3:4309644-4309663 | MS.gene20608:intron | 20.0% |
!!! | TAGTGTTTAGGATAAAAATA+TGG | + | chr6.3:4309638-4309657 | MS.gene20608:intron | 20.0% |
!!! | TGTTTAAAATGCTTATGATT+AGG | + | chr6.3:4310967-4310986 | MS.gene20608:intron | 20.0% |
!!! | TTATCCTAAACACTATTTTA+AGG | - | chr6.3:4309633-4309652 | None:intergenic | 20.0% |
!!! | TTTAGGATAAAAATATGGAA+AGG | + | chr6.3:4309643-4309662 | MS.gene20608:intron | 20.0% |
! | AAAGACATAGTTACAAATGA+TGG | + | chr6.3:4308695-4308714 | MS.gene20608:CDS | 25.0% |
! | AACATCTTCAAGTAATTTCT+AGG | - | chr6.3:4309239-4309258 | None:intergenic | 25.0% |
! | AAGGATTACAAAGCTATTAA+GGG | + | chr6.3:4311848-4311867 | MS.gene20608:CDS | 25.0% |
! | AATAAGCTGAAAACAACTTA+TGG | - | chr6.3:4309775-4309794 | None:intergenic | 25.0% |
! | ATCAAATCCTTAAAAAAGCA+TGG | + | chr6.3:4308651-4308670 | MS.gene20608:CDS | 25.0% |
! | ATTAGGTACAATATTCGTTT+CGG | + | chr6.3:4310984-4311003 | MS.gene20608:intron | 25.0% |
! | ATTGTTGTGTAAAATGATCA+AGG | + | chr6.3:4309070-4309089 | MS.gene20608:intron | 25.0% |
! | CAAAAGATAAATGTTCCAAA+AGG | - | chr6.3:4310227-4310246 | None:intergenic | 25.0% |
! | GAATAAATTGGTTGAATTTG+AGG | + | chr6.3:4311745-4311764 | MS.gene20608:CDS | 25.0% |
! | GATAGCAATATAAACACTTT+AGG | + | chr6.3:4309167-4309186 | MS.gene20608:intron | 25.0% |
! | TAGGATAAAAATATGGAAAG+GGG | + | chr6.3:4309645-4309664 | MS.gene20608:intron | 25.0% |
! | TATGCCTTAAAATAGTGTTT+AGG | + | chr6.3:4309626-4309645 | MS.gene20608:intron | 25.0% |
! | TTTCATCTACTGATCTTAAA+GGG | + | chr6.3:4308819-4308838 | MS.gene20608:CDS | 25.0% |
!! | ACAATCTTAATGCAGATTTT+AGG | + | chr6.3:4309945-4309964 | MS.gene20608:intron | 25.0% |
!! | TTTAACTTCAAGTAGTTCAT+TGG | + | chr6.3:4310569-4310588 | MS.gene20608:intron | 25.0% |
!!! | AGAAGAGGTATTGAATAAAT+TGG | + | chr6.3:4311733-4311752 | MS.gene20608:CDS | 25.0% |
!!! | CTCATTTCTAAAATTGACTT+GGG | + | chr6.3:4311108-4311127 | MS.gene20608:intron | 25.0% |
!!! | TAACATTCCATGCTTTTTTA+AGG | - | chr6.3:4308661-4308680 | None:intergenic | 25.0% |
!!! | TTTTAAGGATGTTTCTATTC+TGG | + | chr6.3:4310391-4310410 | MS.gene20608:CDS | 25.0% |
AAAATGCATGGTCAAAATCA+AGG | + | chr6.3:4310314-4310333 | MS.gene20608:CDS | 30.0% | |
AAACTATCCTTAAGAGCTTA+TGG | + | chr6.3:4310732-4310751 | MS.gene20608:intron | 30.0% | |
AAAGATTAAGCTGTATGGTT+TGG | + | chr6.3:4311916-4311935 | MS.gene20608:CDS | 30.0% | |
AAGATTAAGCTGTATGGTTT+GGG | + | chr6.3:4311917-4311936 | MS.gene20608:CDS | 30.0% | |
AAGGCTATAATAGTCAAATC+AGG | - | chr6.3:4308758-4308777 | None:intergenic | 30.0% | |
AGCACCAAAAACTCAAAATT+TGG | + | chr6.3:4309276-4309295 | MS.gene20608:intron | 30.0% | |
ATCCAAACACTTCAAAACTT+TGG | + | chr6.3:4311553-4311572 | MS.gene20608:CDS | 30.0% | |
ATGACATTAAGCAAAATGCA+TGG | + | chr6.3:4310302-4310321 | MS.gene20608:CDS | 30.0% | |
ATTTCACATACCAGAATGTT+TGG | - | chr6.3:4310488-4310507 | None:intergenic | 30.0% | |
ATTTCATTCAGTTTCTTGGA+TGG | - | chr6.3:4311230-4311249 | None:intergenic | 30.0% | |
CAACTTATGGACATATCATA+AGG | - | chr6.3:4309762-4309781 | None:intergenic | 30.0% | |
CAGATAAGCACTTATAAGAT+AGG | - | chr6.3:4310643-4310662 | None:intergenic | 30.0% | |
CATATGCACAACAAATGAAA+TGG | - | chr6.3:4309515-4309534 | None:intergenic | 30.0% | |
CTTCATTTCATTCAGTTTCT+TGG | - | chr6.3:4311234-4311253 | None:intergenic | 30.0% | |
GAAGGATTACAAAGCTATTA+AGG | + | chr6.3:4311847-4311866 | MS.gene20608:CDS | 30.0% | |
GAATTTGAGGACTATGTTTA+TGG | + | chr6.3:4311758-4311777 | MS.gene20608:CDS | 30.0% | |
GCACCAAAAACTCAAAATTT+GGG | + | chr6.3:4309277-4309296 | MS.gene20608:intron | 30.0% | |
GGATTCAAATTAGATGAGTA+CGG | + | chr6.3:4310335-4310354 | MS.gene20608:CDS | 30.0% | |
GTAAAATGATCAAGGATTCA+TGG | + | chr6.3:4309078-4309097 | MS.gene20608:intron | 30.0% | |
GTTTCATCTACTGATCTTAA+AGG | + | chr6.3:4308818-4308837 | MS.gene20608:CDS | 30.0% | |
TGAAAATCCCGAATCAAATT+TGG | + | chr6.3:4310271-4310290 | MS.gene20608:CDS | 30.0% | |
TGCATTAAGATTGTTGCATT+AGG | - | chr6.3:4309939-4309958 | None:intergenic | 30.0% | |
TGGAACTACATATAGAAGAA+TGG | + | chr6.3:4311466-4311485 | MS.gene20608:CDS | 30.0% | |
TTGAAGATTGGAAGAATCTA+TGG | - | chr6.3:4308789-4308808 | None:intergenic | 30.0% | |
TTTGTCTGATCTTAATCCAA+TGG | + | chr6.3:4309438-4309457 | MS.gene20608:intron | 30.0% | |
! | AAATCACTTGTTTCTCGAAA+AGG | - | chr6.3:4309590-4309609 | None:intergenic | 30.0% |
! | ATAGTTACAAATGATGGTGT+TGG | + | chr6.3:4308701-4308720 | MS.gene20608:CDS | 30.0% |
! | CAAATGATGTCTTCTTTTGA+CGG | - | chr6.3:4311205-4311224 | None:intergenic | 30.0% |
! | TGACTATAGATTCTTGCTTT+TGG | + | chr6.3:4311654-4311673 | MS.gene20608:CDS | 30.0% |
! | TTTAGGATCCAATACTTTCT+AGG | + | chr6.3:4309184-4309203 | MS.gene20608:intron | 30.0% |
!! | CCAAGTCAATTTTAGAAATG+AGG | - | chr6.3:4311110-4311129 | None:intergenic | 30.0% |
!! | CCTCATTTCTAAAATTGACT+TGG | + | chr6.3:4311107-4311126 | MS.gene20608:intron | 30.0% |
!! | CTATGTTTATGGTTTGCTTA+AGG | + | chr6.3:4311769-4311788 | MS.gene20608:CDS | 30.0% |
!! | GACTATAGATTCTTGCTTTT+GGG | + | chr6.3:4311655-4311674 | MS.gene20608:CDS | 30.0% |
!! | TTTCTAGGACCCTTAATAAA+AGG | + | chr6.3:4309199-4309218 | MS.gene20608:intron | 30.0% |
!! | TTTTCGAGAAACAAGTGATT+TGG | + | chr6.3:4309589-4309608 | MS.gene20608:intron | 30.0% |
!! | TTTTGGTGATTAAGACCAAT+TGG | - | chr6.3:4309140-4309159 | None:intergenic | 30.0% |
AATTTCTTGTCACCAACAAG+AGG | - | chr6.3:4310104-4310123 | None:intergenic | 35.0% | |
ACAATATATGCCTAGAAGCT+AGG | - | chr6.3:4309901-4309920 | None:intergenic | 35.0% | |
ACTTGTGTAAGCTTATCAAC+CGG | + | chr6.3:4309690-4309709 | MS.gene20608:intron | 35.0% | |
AGAATCTATGGTAGCTTCAA+AGG | - | chr6.3:4308777-4308796 | None:intergenic | 35.0% | |
ATCCCTTTACTCTTTGCTTT+CGG | - | chr6.3:4309392-4309411 | None:intergenic | 35.0% | |
ATTGCTCAGTACTATAGAGA+CGG | + | chr6.3:4311503-4311522 | MS.gene20608:CDS | 35.0% | |
CAAACACTTCAAAACTTTGG+AGG | + | chr6.3:4311556-4311575 | MS.gene20608:CDS | 35.0% | |
CAGTACAAGTAAGAAGAAAG+TGG | + | chr6.3:4311622-4311641 | MS.gene20608:CDS | 35.0% | |
CAGTCATCTTGTAACAACAA+AGG | + | chr6.3:4309859-4309878 | MS.gene20608:intron | 35.0% | |
CATTCAGATTCACTTGTGAT+TGG | + | chr6.3:4310428-4310447 | MS.gene20608:CDS | 35.0% | |
CCAATTAGAACTACGTGATA+TGG | - | chr6.3:4310135-4310154 | None:intergenic | 35.0% | |
CGCAAATTATTGGGAAAAGA+TGG | + | chr6.3:4311379-4311398 | MS.gene20608:CDS | 35.0% | |
CTTGTTTCCATAAGCTCTTA+AGG | - | chr6.3:4310742-4310761 | None:intergenic | 35.0% | |
GAAATATAGTCGACAATCTC+AGG | + | chr6.3:4310357-4310376 | MS.gene20608:CDS | 35.0% | |
GAATGAAATGAAGCGACATA+TGG | + | chr6.3:4311241-4311260 | MS.gene20608:CDS | 35.0% | |
GATTCTTCCAATCTTCAAAG+TGG | + | chr6.3:4308791-4308810 | MS.gene20608:CDS | 35.0% | |
GCTAATTTCATGAATGATGC+TGG | + | chr6.3:4311893-4311912 | MS.gene20608:CDS | 35.0% | |
GTAACAATCAATGGAGTTAC+CGG | - | chr6.3:4309978-4309997 | None:intergenic | 35.0% | |
GTACTAAGTGCGTGAATTTA+GGG | - | chr6.3:4309345-4309364 | None:intergenic | 35.0% | |
GTCATGATTTAAACCTTGAG+AGG | + | chr6.3:4310937-4310956 | MS.gene20608:intron | 35.0% | |
TAAACAACAACTTCCTCTCA+AGG | - | chr6.3:4310953-4310972 | None:intergenic | 35.0% | |
TATGCATATTCCTAGCTTCT+AGG | + | chr6.3:4309888-4309907 | MS.gene20608:intron | 35.0% | |
TGTGCTTATGTGTAAACAAG+TGG | + | chr6.3:4310603-4310622 | MS.gene20608:intron | 35.0% | |
TGTTACAAGATGACTGTGTT+TGG | - | chr6.3:4309855-4309874 | None:intergenic | 35.0% | |
TTCCAATCTTCAAAGTGGTT+TGG | + | chr6.3:4308796-4308815 | MS.gene20608:CDS | 35.0% | |
TTTGCCTCAAGAAAATCTCA+GGG | - | chr6.3:4311808-4311827 | None:intergenic | 35.0% | |
! | AAAGTAGCTATATGAGTTGG+TGG | + | chr6.3:4311825-4311844 | MS.gene20608:CDS | 35.0% |
! | AACCAAACCACTTTGAAGAT+TGG | - | chr6.3:4308801-4308820 | None:intergenic | 35.0% |
! | ACTTCAAAACTTTGGAGGAA+TGG | + | chr6.3:4311561-4311580 | MS.gene20608:CDS | 35.0% |
! | ATCACAAATCACATGCCTTT+TGG | + | chr6.3:4310209-4310228 | MS.gene20608:CDS | 35.0% |
! | CCATTGATTGTTACTGGAAA+AGG | + | chr6.3:4309984-4310003 | MS.gene20608:CDS | 35.0% |
! | CCTTTTCCAGTAACAATCAA+TGG | - | chr6.3:4309987-4310006 | None:intergenic | 35.0% |
! | GAGCTGTTTAACTTTCCAAT+TGG | + | chr6.3:4309122-4309141 | MS.gene20608:intron | 35.0% |
! | GCTTGATGAGTTGAAATCTA+AGG | + | chr6.3:4308943-4308962 | MS.gene20608:CDS | 35.0% |
! | GGTATTTCCCCTTATCTTTT+TGG | + | chr6.3:4308964-4308983 | MS.gene20608:intron | 35.0% |
! | GTAACTCCATTGATTGTTAC+TGG | + | chr6.3:4309978-4309997 | MS.gene20608:CDS | 35.0% |
! | GTGTCATTAAGAGAGAAAGA+AGG | - | chr6.3:4308890-4308909 | None:intergenic | 35.0% |
! | GTTTCGGTTTTTCTTGTTAG+TGG | + | chr6.3:4311000-4311019 | MS.gene20608:intron | 35.0% |
! | TGATGAATAGCCTTGGAAAA+GGG | - | chr6.3:4310193-4310212 | None:intergenic | 35.0% |
! | TGATTTGTGATGAATAGCCT+TGG | - | chr6.3:4310200-4310219 | None:intergenic | 35.0% |
! | TTAAGGGTCCTAGAAAGTAT+TGG | - | chr6.3:4309195-4309214 | None:intergenic | 35.0% |
!! | CCATATCACGTAGTTCTAAT+TGG | + | chr6.3:4310132-4310151 | MS.gene20608:CDS | 35.0% |
!! | GCAGATTTTAGGTACAAATC+CGG | + | chr6.3:4309956-4309975 | MS.gene20608:intron | 35.0% |
!!! | CAGGCGTAAAGCATTTTTTA+AGG | + | chr6.3:4310376-4310395 | MS.gene20608:CDS | 35.0% |
!!! | CTCCAAAGTTTTGAAGTGTT+TGG | - | chr6.3:4311558-4311577 | None:intergenic | 35.0% |
!!! | TGGCCCAAATTTTGAGTTTT+TGG | - | chr6.3:4309283-4309302 | None:intergenic | 35.0% |
AATTCACGCACTTAGTACGT+TGG | + | chr6.3:4309347-4309366 | MS.gene20608:intron | 40.0% | |
AGGATTGACACCAAACATTC+TGG | + | chr6.3:4310475-4310494 | MS.gene20608:CDS | 40.0% | |
ATTGTTACTGGAAAAGGCCT+CGG | + | chr6.3:4309990-4310009 | MS.gene20608:CDS | 40.0% | |
ATTTGGGCCACAAAATATCG+AGG | + | chr6.3:4309293-4309312 | MS.gene20608:intron | 40.0% | |
CATTCACGCAGTTAGTGTAT+TGG | - | chr6.3:4309467-4309486 | None:intergenic | 40.0% | |
CGAAGTGAAAGACAAAGAAG+AGG | + | chr6.3:4311718-4311737 | MS.gene20608:CDS | 40.0% | |
CGTACTAAGTGCGTGAATTT+AGG | - | chr6.3:4309346-4309365 | None:intergenic | 40.0% | |
CTTTGCCTCAAGAAAATCTC+AGG | - | chr6.3:4311809-4311828 | None:intergenic | 40.0% | |
GAACCAAATGTGATGCATAG+TGG | - | chr6.3:4310080-4310099 | None:intergenic | 40.0% | |
GACTGTTTGAGAGAGCTATA+TGG | + | chr6.3:4309731-4309750 | MS.gene20608:intron | 40.0% | |
GCTGGAAAGATTAAGCTGTA+TGG | + | chr6.3:4311911-4311930 | MS.gene20608:CDS | 40.0% | |
GGCAAAGTAGCTATATGAGT+TGG | + | chr6.3:4311822-4311841 | MS.gene20608:CDS | 40.0% | |
GTCCGAAAGCAAAGAGTAAA+GGG | + | chr6.3:4309387-4309406 | MS.gene20608:intron | 40.0% | |
TATGGTTGCAGATTTAGCAG+TGG | + | chr6.3:4308599-4308618 | MS.gene20608:intron | 40.0% | |
TTGCCTCAAGAAAATCTCAG+GGG | - | chr6.3:4311807-4311826 | None:intergenic | 40.0% | |
! | AACTTTGGAGGAATGGTTAG+AGG | + | chr6.3:4311568-4311587 | MS.gene20608:CDS | 40.0% |
! | AAGGATGTTTCTATTCTGGC+TGG | + | chr6.3:4310395-4310414 | MS.gene20608:CDS | 40.0% |
! | ACATTTGGTTCACCTCTTGT+TGG | + | chr6.3:4310089-4310108 | MS.gene20608:CDS | 40.0% |
! | ATGATGGTGTTGGATTGTGT+TGG | + | chr6.3:4308711-4308730 | MS.gene20608:CDS | 40.0% |
! | CACAGAACCTCGATATTTTG+TGG | - | chr6.3:4309303-4309322 | None:intergenic | 40.0% |
! | GTGATGAATAGCCTTGGAAA+AGG | - | chr6.3:4310194-4310213 | None:intergenic | 40.0% |
! | GTTAGTGTATTGGTGACCAT+TGG | - | chr6.3:4309457-4309476 | None:intergenic | 40.0% |
! | TAGTACTGAGCAATAGCTAG+TGG | - | chr6.3:4311497-4311516 | None:intergenic | 40.0% |
! | TGATGTCTTCTTTTGACGGA+TGG | - | chr6.3:4311201-4311220 | None:intergenic | 40.0% |
!! | GTTGGTGATCGTTTGATCTT+TGG | + | chr6.3:4309365-4309384 | MS.gene20608:intron | 40.0% |
!! | TAGCTATATGAGTTGGTGGA+AGG | + | chr6.3:4311829-4311848 | MS.gene20608:CDS | 40.0% |
ACACTAACTGCGTGAATGCA+AGG | + | chr6.3:4309469-4309488 | MS.gene20608:intron | 45.0% | |
AGTTTGCAGTTGCAAGCACT+AGG | + | chr6.3:4310455-4310474 | MS.gene20608:CDS | 45.0% | |
CAAGGATATCCCAACTGCAA+CGG | + | chr6.3:4309487-4309506 | MS.gene20608:intron | 45.0% | |
CGACCACTATGCATCACATT+TGG | + | chr6.3:4310074-4310093 | MS.gene20608:CDS | 45.0% | |
CTCACAAGTGCTTATGTCAC+CGG | - | chr6.3:4309712-4309731 | None:intergenic | 45.0% | |
GAAATGGATCCGTTGCAGTT+GGG | - | chr6.3:4309499-4309518 | None:intergenic | 45.0% | |
GAACTGAAGCCTCAAAGAGA+AGG | + | chr6.3:4311413-4311432 | MS.gene20608:CDS | 45.0% | |
GACATATGGCGCAACTTGAA+TGG | + | chr6.3:4311255-4311274 | MS.gene20608:CDS | 45.0% | |
GGTCCGAAAGCAAAGAGTAA+AGG | + | chr6.3:4309386-4309405 | MS.gene20608:intron | 45.0% | |
TGAAATGGATCCGTTGCAGT+TGG | - | chr6.3:4309500-4309519 | None:intergenic | 45.0% | |
TGCATTTGACCGCAACTATC+TGG | + | chr6.3:4310885-4310904 | MS.gene20608:intron | 45.0% | |
TTACAATCACAGTCACGCTG+TGG | - | chr6.3:4310912-4310931 | None:intergenic | 45.0% | |
! | CATGCAAAGACCCTTTTCCA+AGG | + | chr6.3:4310180-4310199 | MS.gene20608:CDS | 45.0% |
! | CTTTTGGGCACATGTTGAAG+AGG | + | chr6.3:4311670-4311689 | MS.gene20608:CDS | 45.0% |
! | GTTTCTATTCTGGCTGGAGA+CGG | + | chr6.3:4310401-4310420 | MS.gene20608:CDS | 45.0% |
! | TGTCCCCTGAGATTTTCTTG+AGG | + | chr6.3:4311801-4311820 | MS.gene20608:CDS | 45.0% |
! | TTTCTATTCTGGCTGGAGAC+GGG | + | chr6.3:4310402-4310421 | MS.gene20608:CDS | 45.0% |
!! | TTTCGTAATCGCTGGCTCTT+CGG | + | chr6.3:4311443-4311462 | MS.gene20608:CDS | 45.0% |
AATGCAGCGCCTTCTCTTTG+AGG | - | chr6.3:4311425-4311444 | None:intergenic | 50.0% | |
GCGGTCAAATGCAGCAAAGA+AGG | - | chr6.3:4310878-4310897 | None:intergenic | 50.0% | |
GCTCAGTACTATAGAGACGG+TGG | + | chr6.3:4311506-4311525 | MS.gene20608:CDS | 50.0% | |
GTGAAGCTATTGATCCTCCG+AGG | - | chr6.3:4310010-4310029 | None:intergenic | 50.0% | |
CGCTGTGGTCCAGATAGTTG+CGG | - | chr6.3:4310897-4310916 | None:intergenic | 55.0% | |
GCGCTGCATTTCGTAATCGC+TGG | + | chr6.3:4311435-4311454 | MS.gene20608:CDS | 55.0% | |
GTTACTGGAAAAGGCCTCGG+AGG | + | chr6.3:4309993-4310012 | MS.gene20608:CDS | 55.0% | |
!! | CGTAATCGCTGGCTCTTCGG+TGG | + | chr6.3:4311446-4311465 | MS.gene20608:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 4308480 | 4311958 | 4308480 | ID=MS.gene20608 |
chr6.3 | mRNA | 4308480 | 4311958 | 4308480 | ID=MS.gene20608.t1;Parent=MS.gene20608 |
chr6.3 | exon | 4308480 | 4308496 | 4308480 | ID=MS.gene20608.t1.exon1;Parent=MS.gene20608.t1 |
chr6.3 | CDS | 4308480 | 4308496 | 4308480 | ID=cds.MS.gene20608.t1;Parent=MS.gene20608.t1 |
chr6.3 | exon | 4308610 | 4308964 | 4308610 | ID=MS.gene20608.t1.exon2;Parent=MS.gene20608.t1 |
chr6.3 | CDS | 4308610 | 4308964 | 4308610 | ID=cds.MS.gene20608.t1;Parent=MS.gene20608.t1 |
chr6.3 | exon | 4309960 | 4310496 | 4309960 | ID=MS.gene20608.t1.exon3;Parent=MS.gene20608.t1 |
chr6.3 | CDS | 4309960 | 4310496 | 4309960 | ID=cds.MS.gene20608.t1;Parent=MS.gene20608.t1 |
chr6.3 | exon | 4311137 | 4311958 | 4311137 | ID=MS.gene20608.t1.exon4;Parent=MS.gene20608.t1 |
chr6.3 | CDS | 4311137 | 4311958 | 4311137 | ID=cds.MS.gene20608.t1;Parent=MS.gene20608.t1 |
Gene Sequence |
Protein sequence |