AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20608


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20608.t1 MTR_6g007975 88.428 579 62 3 1 576 1 577 0.0 1047
MS.gene20608.t1 MTR_6g008015 84.256 578 89 1 1 576 1 578 0.0 1003
MS.gene20608.t1 MTR_6g008055 74.658 584 131 5 1 576 1 575 0.0 855
MS.gene20608.t1 MTR_6g007985 83.444 453 75 0 124 576 49 501 0.0 791
MS.gene20608.t1 MTR_3g467360 64.433 582 194 6 1 576 1 575 0.0 730
MS.gene20608.t1 MTR_3g467360 64.410 576 192 6 7 576 13 581 0.0 722
MS.gene20608.t1 MTR_0286s0040 71.991 457 53 5 124 576 2 387 0.0 635
MS.gene20608.t1 MTR_6g007980 56.485 586 233 10 1 575 1 575 0.0 605
MS.gene20608.t1 MTR_6g007980 56.388 587 233 11 1 575 1 576 0.0 598
MS.gene20608.t1 MTR_6g007980 56.293 588 233 11 1 575 1 577 0.0 598
MS.gene20608.t1 MTR_3g467350 46.379 580 209 12 1 576 1 482 5.66e-141 417
MS.gene20608.t1 MTR_0286s0050 86.508 126 15 1 1 124 1 126 4.94e-67 215
MS.gene20608.t1 MTR_8g494200 26.901 513 295 17 108 547 106 611 1.66e-34 138
MS.gene20608.t1 MTR_3g078633 24.654 361 210 14 208 541 275 600 2.22e-18 89.4
MS.gene20608.t1 MTR_3g078633 24.654 361 210 14 208 541 203 528 2.93e-18 88.6
MS.gene20608.t1 MTR_3g079340 24.931 361 206 14 208 541 276 598 4.19e-18 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20608.t1 AT5G14930 39.405 538 257 19 44 569 54 534 1.53e-101 318
MS.gene20608.t1 AT3G52430 27.804 428 276 11 134 547 112 520 4.37e-41 156
MS.gene20608.t1 AT5G14930 44.149 188 95 5 44 230 54 232 3.01e-36 135
MS.gene20608.t1 AT3G48080 26.772 381 190 18 208 540 264 603 5.32e-13 72.4
MS.gene20608.t1 AT3G48090 23.197 513 258 19 134 540 9 491 2.10e-12 70.1

Find 87 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCATTTCATTCAGTTTCT+TGG 0.135337 6.3:-4311231 None:intergenic
GAATTTGAGGACTATGTTTA+TGG 0.172177 6.3:+4311758 MS.gene20608:CDS
TCAATTATTACATACAATTT+AGG 0.197479 6.3:-4308489 None:intergenic
GAAGGATTACAAAGCTATTA+AGG 0.207034 6.3:+4311847 MS.gene20608:CDS
GTTTCATCTACTGATCTTAA+AGG 0.209261 6.3:+4308818 MS.gene20608:CDS
TGAAAATCCCGAATCAAATT+TGG 0.210471 6.3:+4310271 MS.gene20608:CDS
TGACTATAGATTCTTGCTTT+TGG 0.226808 6.3:+4311654 MS.gene20608:CDS
ATAAAATACTCGCAAATTAT+TGG 0.227886 6.3:+4311369 MS.gene20608:CDS
GTAACTCCATTGATTGTTAC+TGG 0.255033 6.3:+4309978 MS.gene20608:CDS
ATCACAAATCACATGCCTTT+TGG 0.262198 6.3:+4310209 MS.gene20608:CDS
AGAAGAGGTATTGAATAAAT+TGG 0.271295 6.3:+4311733 MS.gene20608:CDS
CCAATTAGAACTACGTGATA+TGG 0.291561 6.3:-4310132 None:intergenic
CCATATCACGTAGTTCTAAT+TGG 0.302095 6.3:+4310132 MS.gene20608:CDS
TAAAATACTCGCAAATTATT+GGG 0.305864 6.3:+4311370 MS.gene20608:CDS
GAATAAATTGGTTGAATTTG+AGG 0.332286 6.3:+4311745 MS.gene20608:CDS
TTGAAGATTGGAAGAATCTA+TGG 0.335987 6.3:-4308786 None:intergenic
ATTATTTCCAAATTTGATTC+GGG 0.351999 6.3:-4310278 None:intergenic
AAAGATTAAGCTGTATGGTT+TGG 0.357357 6.3:+4311916 MS.gene20608:CDS
TATTATTTCCAAATTTGATT+CGG 0.364694 6.3:-4310279 None:intergenic
GAAATATAGTCGACAATCTC+AGG 0.372842 6.3:+4310357 MS.gene20608:CDS
AATGCAGCGCCTTCTCTTTG+AGG 0.373682 6.3:-4311422 None:intergenic
AAGATTAAGCTGTATGGTTT+GGG 0.377569 6.3:+4311917 MS.gene20608:CDS
CTATGTTTATGGTTTGCTTA+AGG 0.380016 6.3:+4311769 MS.gene20608:CDS
ATTTCACATACCAGAATGTT+TGG 0.383284 6.3:-4310485 None:intergenic
AGGATTGACACCAAACATTC+TGG 0.383720 6.3:+4310475 MS.gene20608:CDS
ATCCAAACACTTCAAAACTT+TGG 0.383816 6.3:+4311553 MS.gene20608:CDS
CATTCAGATTCACTTGTGAT+TGG 0.385490 6.3:+4310428 MS.gene20608:CDS
AACTTTGGAGGAATGGTTAG+AGG 0.385579 6.3:+4311568 MS.gene20608:CDS
TTTCGTAATCGCTGGCTCTT+CGG 0.387487 6.3:+4311443 MS.gene20608:CDS
AACCAAACCACTTTGAAGAT+TGG 0.395980 6.3:-4308798 None:intergenic
CCATTGATTGTTACTGGAAA+AGG 0.396055 6.3:+4309984 MS.gene20608:CDS
TTCCAATCTTCAAAGTGGTT+TGG 0.400123 6.3:+4308796 MS.gene20608:CDS
GCTTGATGAGTTGAAATCTA+AGG 0.406363 6.3:+4308943 MS.gene20608:CDS
ACATTTGGTTCACCTCTTGT+TGG 0.416180 6.3:+4310089 MS.gene20608:CDS
TTTCATCTACTGATCTTAAA+GGG 0.419208 6.3:+4308819 MS.gene20608:CDS
CTTTGCCTCAAGAAAATCTC+AGG 0.419803 6.3:-4311806 None:intergenic
CGCAAATTATTGGGAAAAGA+TGG 0.421689 6.3:+4311379 MS.gene20608:CDS
CGACCACTATGCATCACATT+TGG 0.424066 6.3:+4310074 MS.gene20608:CDS
GTAACAATCAATGGAGTTAC+CGG 0.425650 6.3:-4309975 None:intergenic
GCTAATTTCATGAATGATGC+TGG 0.443162 6.3:+4311893 MS.gene20608:CDS
GTGATGAATAGCCTTGGAAA+AGG 0.445163 6.3:-4310191 None:intergenic
ATTTCATTCAGTTTCTTGGA+TGG 0.448594 6.3:-4311227 None:intergenic
AAGGCTATAATAGTCAAATC+AGG 0.452500 6.3:-4308755 None:intergenic
GTTTCTATTCTGGCTGGAGA+CGG 0.462569 6.3:+4310401 MS.gene20608:CDS
AAGGATTACAAAGCTATTAA+GGG 0.468996 6.3:+4311848 MS.gene20608:CDS
ACTTCAAAACTTTGGAGGAA+TGG 0.474242 6.3:+4311561 MS.gene20608:CDS
AAGGATGTTTCTATTCTGGC+TGG 0.477821 6.3:+4310395 MS.gene20608:CDS
CAAACACTTCAAAACTTTGG+AGG 0.479364 6.3:+4311556 MS.gene20608:CDS
AAAATGCATGGTCAAAATCA+AGG 0.483065 6.3:+4310314 MS.gene20608:CDS
AGAATCTATGGTAGCTTCAA+AGG 0.487090 6.3:-4308774 None:intergenic
TTTCTATTCTGGCTGGAGAC+GGG 0.496043 6.3:+4310402 MS.gene20608:CDS
CGTAATCGCTGGCTCTTCGG+TGG 0.499967 6.3:+4311446 MS.gene20608:CDS
AAAGACATAGTTACAAATGA+TGG 0.503356 6.3:+4308695 MS.gene20608:CDS
GAATGAAATGAAGCGACATA+TGG 0.505636 6.3:+4311241 MS.gene20608:CDS
CAGTACAAGTAAGAAGAAAG+TGG 0.517579 6.3:+4311622 MS.gene20608:CDS
GACATATGGCGCAACTTGAA+TGG 0.517973 6.3:+4311255 MS.gene20608:CDS
CAAAAGATAAATGTTCCAAA+AGG 0.524494 6.3:-4310224 None:intergenic
ATAGTTACAAATGATGGTGT+TGG 0.526184 6.3:+4308701 MS.gene20608:CDS
TGATGAATAGCCTTGGAAAA+GGG 0.532207 6.3:-4310190 None:intergenic
GCTGGAAAGATTAAGCTGTA+TGG 0.534665 6.3:+4311911 MS.gene20608:CDS
ATTGTTACTGGAAAAGGCCT+CGG 0.544076 6.3:+4309990 MS.gene20608:CDS
GCGCTGCATTTCGTAATCGC+TGG 0.548557 6.3:+4311435 MS.gene20608:CDS
GAACTGAAGCCTCAAAGAGA+AGG 0.549949 6.3:+4311413 MS.gene20608:CDS
TGATTTGTGATGAATAGCCT+TGG 0.549978 6.3:-4310197 None:intergenic
TGGAACTACATATAGAAGAA+TGG 0.555344 6.3:+4311466 MS.gene20608:CDS
GGCAAAGTAGCTATATGAGT+TGG 0.559632 6.3:+4311822 MS.gene20608:CDS
GGATTCAAATTAGATGAGTA+CGG 0.563198 6.3:+4310335 MS.gene20608:CDS
TAGCTATATGAGTTGGTGGA+AGG 0.570581 6.3:+4311829 MS.gene20608:CDS
AGTTTGCAGTTGCAAGCACT+AGG 0.576986 6.3:+4310455 MS.gene20608:CDS
GATTCTTCCAATCTTCAAAG+TGG 0.578901 6.3:+4308791 MS.gene20608:CDS
ATGATGGTGTTGGATTGTGT+TGG 0.590699 6.3:+4308711 MS.gene20608:CDS
AATTTCTTGTCACCAACAAG+AGG 0.597556 6.3:-4310101 None:intergenic
CGAAGTGAAAGACAAAGAAG+AGG 0.600753 6.3:+4311718 MS.gene20608:CDS
GTGTCATTAAGAGAGAAAGA+AGG 0.603100 6.3:-4308887 None:intergenic
ATACAATTTAGGTTGTGCCA+TGG 0.603766 6.3:-4308478 None:intergenic
TATGGTTGCAGATTTAGCAG+TGG 0.609923 6.3:+4308599 MS.gene20608:intron
ATATCACTATTAGATAACAT+TGG 0.614599 6.3:+4310038 MS.gene20608:CDS
AAAGTAGCTATATGAGTTGG+TGG 0.616200 6.3:+4311825 MS.gene20608:CDS
TAGTACTGAGCAATAGCTAG+TGG 0.632998 6.3:-4311494 None:intergenic
ATGACATTAAGCAAAATGCA+TGG 0.634750 6.3:+4310302 MS.gene20608:CDS
TTTGCCTCAAGAAAATCTCA+GGG 0.641885 6.3:-4311805 None:intergenic
ATTGCTCAGTACTATAGAGA+CGG 0.657739 6.3:+4311503 MS.gene20608:CDS
GAACCAAATGTGATGCATAG+TGG 0.665505 6.3:-4310077 None:intergenic
GTTACTGGAAAAGGCCTCGG+AGG 0.690166 6.3:+4309993 MS.gene20608:CDS
GCTCAGTACTATAGAGACGG+TGG 0.708580 6.3:+4311506 MS.gene20608:CDS
GTGAAGCTATTGATCCTCCG+AGG 0.724728 6.3:-4310007 None:intergenic
TTGCCTCAAGAAAATCTCAG+GGG 0.763292 6.3:-4311804 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATTAGTAATAAATAATAA+TGG - chr6.3:4308523-4308542 None:intergenic 10.0%
!!! TATTTAGTTAATTTTGTATT+TGG + chr6.3:4308574-4308593 MS.gene20608:intron 10.0%
!!! TTTATCTTTTATTGTTAAAA+GGG + chr6.3:4309811-4309830 MS.gene20608:intron 10.0%
!!! TTTTATCTTTTATTGTTAAA+AGG + chr6.3:4309810-4309829 MS.gene20608:intron 10.0%
!! AAAAATAATCCAAAAAGATA+AGG - chr6.3:4308976-4308995 None:intergenic 15.0%
!! AAAATAATCCAAAAAGATAA+GGG - chr6.3:4308975-4308994 None:intergenic 15.0%
!! TATTATTTCCAAATTTGATT+CGG - chr6.3:4310282-4310301 None:intergenic 15.0%
!! TCAATTATTACATACAATTT+AGG - chr6.3:4308492-4308511 None:intergenic 15.0%
!! TCATTTAATTAAACCATATT+AGG + chr6.3:4310537-4310556 MS.gene20608:intron 15.0%
!!! AAAAACAATTCCTTTTATTA+AGG - chr6.3:4309212-4309231 None:intergenic 15.0%
!!! AAAACAATTCCTTTTATTAA+GGG - chr6.3:4309211-4309230 None:intergenic 15.0%
!!! CTTTTTGGATTATTTTTTTT+AGG + chr6.3:4308979-4308998 MS.gene20608:intron 15.0%
!!! TATTGCTATCTTAAATATTT+TGG - chr6.3:4309157-4309176 None:intergenic 15.0%
!!! TTAATAAAAGGAATTGTTTT+TGG + chr6.3:4309211-4309230 MS.gene20608:intron 15.0%
!!! TTAATTTTGTATTTGGATTA+TGG + chr6.3:4308581-4308600 MS.gene20608:intron 15.0%
!! AAAACAAAAAATCTTCACAT+AGG + chr6.3:4311287-4311306 MS.gene20608:CDS 20.0%
!! AAACAAAAAATCTTCACATA+GGG + chr6.3:4311288-4311307 MS.gene20608:CDS 20.0%
!! AAATAATCCAAAAAGATAAG+GGG - chr6.3:4308974-4308993 None:intergenic 20.0%
!! AACAAAAGATAGAATAAAGT+TGG + chr6.3:4310677-4310696 MS.gene20608:intron 20.0%
!! AAGATAAAATAGAGAGATTA+TGG - chr6.3:4309799-4309818 None:intergenic 20.0%
!! ATAAAATACTCGCAAATTAT+TGG + chr6.3:4311369-4311388 MS.gene20608:CDS 20.0%
!! ATATCACTATTAGATAACAT+TGG + chr6.3:4310038-4310057 MS.gene20608:CDS 20.0%
!! ATTATTTCCAAATTTGATTC+GGG - chr6.3:4310281-4310300 None:intergenic 20.0%
!! TAAAATACTCGCAAATTATT+GGG + chr6.3:4311370-4311389 MS.gene20608:CDS 20.0%
!! TAAACAAAACTAACCTAATA+TGG - chr6.3:4310553-4310572 None:intergenic 20.0%
!! TTAGGATAAAAATATGGAAA+GGG + chr6.3:4309644-4309663 MS.gene20608:intron 20.0%
!!! TAGTGTTTAGGATAAAAATA+TGG + chr6.3:4309638-4309657 MS.gene20608:intron 20.0%
!!! TGTTTAAAATGCTTATGATT+AGG + chr6.3:4310967-4310986 MS.gene20608:intron 20.0%
!!! TTATCCTAAACACTATTTTA+AGG - chr6.3:4309633-4309652 None:intergenic 20.0%
!!! TTTAGGATAAAAATATGGAA+AGG + chr6.3:4309643-4309662 MS.gene20608:intron 20.0%
! AAAGACATAGTTACAAATGA+TGG + chr6.3:4308695-4308714 MS.gene20608:CDS 25.0%
! AACATCTTCAAGTAATTTCT+AGG - chr6.3:4309239-4309258 None:intergenic 25.0%
! AAGGATTACAAAGCTATTAA+GGG + chr6.3:4311848-4311867 MS.gene20608:CDS 25.0%
! AATAAGCTGAAAACAACTTA+TGG - chr6.3:4309775-4309794 None:intergenic 25.0%
! ATCAAATCCTTAAAAAAGCA+TGG + chr6.3:4308651-4308670 MS.gene20608:CDS 25.0%
! ATTAGGTACAATATTCGTTT+CGG + chr6.3:4310984-4311003 MS.gene20608:intron 25.0%
! ATTGTTGTGTAAAATGATCA+AGG + chr6.3:4309070-4309089 MS.gene20608:intron 25.0%
! CAAAAGATAAATGTTCCAAA+AGG - chr6.3:4310227-4310246 None:intergenic 25.0%
! GAATAAATTGGTTGAATTTG+AGG + chr6.3:4311745-4311764 MS.gene20608:CDS 25.0%
! GATAGCAATATAAACACTTT+AGG + chr6.3:4309167-4309186 MS.gene20608:intron 25.0%
! TAGGATAAAAATATGGAAAG+GGG + chr6.3:4309645-4309664 MS.gene20608:intron 25.0%
! TATGCCTTAAAATAGTGTTT+AGG + chr6.3:4309626-4309645 MS.gene20608:intron 25.0%
! TTTCATCTACTGATCTTAAA+GGG + chr6.3:4308819-4308838 MS.gene20608:CDS 25.0%
!! ACAATCTTAATGCAGATTTT+AGG + chr6.3:4309945-4309964 MS.gene20608:intron 25.0%
!! TTTAACTTCAAGTAGTTCAT+TGG + chr6.3:4310569-4310588 MS.gene20608:intron 25.0%
!!! AGAAGAGGTATTGAATAAAT+TGG + chr6.3:4311733-4311752 MS.gene20608:CDS 25.0%
!!! CTCATTTCTAAAATTGACTT+GGG + chr6.3:4311108-4311127 MS.gene20608:intron 25.0%
!!! TAACATTCCATGCTTTTTTA+AGG - chr6.3:4308661-4308680 None:intergenic 25.0%
!!! TTTTAAGGATGTTTCTATTC+TGG + chr6.3:4310391-4310410 MS.gene20608:CDS 25.0%
AAAATGCATGGTCAAAATCA+AGG + chr6.3:4310314-4310333 MS.gene20608:CDS 30.0%
AAACTATCCTTAAGAGCTTA+TGG + chr6.3:4310732-4310751 MS.gene20608:intron 30.0%
AAAGATTAAGCTGTATGGTT+TGG + chr6.3:4311916-4311935 MS.gene20608:CDS 30.0%
AAGATTAAGCTGTATGGTTT+GGG + chr6.3:4311917-4311936 MS.gene20608:CDS 30.0%
AAGGCTATAATAGTCAAATC+AGG - chr6.3:4308758-4308777 None:intergenic 30.0%
AGCACCAAAAACTCAAAATT+TGG + chr6.3:4309276-4309295 MS.gene20608:intron 30.0%
ATCCAAACACTTCAAAACTT+TGG + chr6.3:4311553-4311572 MS.gene20608:CDS 30.0%
ATGACATTAAGCAAAATGCA+TGG + chr6.3:4310302-4310321 MS.gene20608:CDS 30.0%
ATTTCACATACCAGAATGTT+TGG - chr6.3:4310488-4310507 None:intergenic 30.0%
ATTTCATTCAGTTTCTTGGA+TGG - chr6.3:4311230-4311249 None:intergenic 30.0%
CAACTTATGGACATATCATA+AGG - chr6.3:4309762-4309781 None:intergenic 30.0%
CAGATAAGCACTTATAAGAT+AGG - chr6.3:4310643-4310662 None:intergenic 30.0%
CATATGCACAACAAATGAAA+TGG - chr6.3:4309515-4309534 None:intergenic 30.0%
CTTCATTTCATTCAGTTTCT+TGG - chr6.3:4311234-4311253 None:intergenic 30.0%
GAAGGATTACAAAGCTATTA+AGG + chr6.3:4311847-4311866 MS.gene20608:CDS 30.0%
GAATTTGAGGACTATGTTTA+TGG + chr6.3:4311758-4311777 MS.gene20608:CDS 30.0%
GCACCAAAAACTCAAAATTT+GGG + chr6.3:4309277-4309296 MS.gene20608:intron 30.0%
GGATTCAAATTAGATGAGTA+CGG + chr6.3:4310335-4310354 MS.gene20608:CDS 30.0%
GTAAAATGATCAAGGATTCA+TGG + chr6.3:4309078-4309097 MS.gene20608:intron 30.0%
GTTTCATCTACTGATCTTAA+AGG + chr6.3:4308818-4308837 MS.gene20608:CDS 30.0%
TGAAAATCCCGAATCAAATT+TGG + chr6.3:4310271-4310290 MS.gene20608:CDS 30.0%
TGCATTAAGATTGTTGCATT+AGG - chr6.3:4309939-4309958 None:intergenic 30.0%
TGGAACTACATATAGAAGAA+TGG + chr6.3:4311466-4311485 MS.gene20608:CDS 30.0%
TTGAAGATTGGAAGAATCTA+TGG - chr6.3:4308789-4308808 None:intergenic 30.0%
TTTGTCTGATCTTAATCCAA+TGG + chr6.3:4309438-4309457 MS.gene20608:intron 30.0%
! AAATCACTTGTTTCTCGAAA+AGG - chr6.3:4309590-4309609 None:intergenic 30.0%
! ATAGTTACAAATGATGGTGT+TGG + chr6.3:4308701-4308720 MS.gene20608:CDS 30.0%
! CAAATGATGTCTTCTTTTGA+CGG - chr6.3:4311205-4311224 None:intergenic 30.0%
! TGACTATAGATTCTTGCTTT+TGG + chr6.3:4311654-4311673 MS.gene20608:CDS 30.0%
! TTTAGGATCCAATACTTTCT+AGG + chr6.3:4309184-4309203 MS.gene20608:intron 30.0%
!! CCAAGTCAATTTTAGAAATG+AGG - chr6.3:4311110-4311129 None:intergenic 30.0%
!! CCTCATTTCTAAAATTGACT+TGG + chr6.3:4311107-4311126 MS.gene20608:intron 30.0%
!! CTATGTTTATGGTTTGCTTA+AGG + chr6.3:4311769-4311788 MS.gene20608:CDS 30.0%
!! GACTATAGATTCTTGCTTTT+GGG + chr6.3:4311655-4311674 MS.gene20608:CDS 30.0%
!! TTTCTAGGACCCTTAATAAA+AGG + chr6.3:4309199-4309218 MS.gene20608:intron 30.0%
!! TTTTCGAGAAACAAGTGATT+TGG + chr6.3:4309589-4309608 MS.gene20608:intron 30.0%
!! TTTTGGTGATTAAGACCAAT+TGG - chr6.3:4309140-4309159 None:intergenic 30.0%
AATTTCTTGTCACCAACAAG+AGG - chr6.3:4310104-4310123 None:intergenic 35.0%
ACAATATATGCCTAGAAGCT+AGG - chr6.3:4309901-4309920 None:intergenic 35.0%
ACTTGTGTAAGCTTATCAAC+CGG + chr6.3:4309690-4309709 MS.gene20608:intron 35.0%
AGAATCTATGGTAGCTTCAA+AGG - chr6.3:4308777-4308796 None:intergenic 35.0%
ATCCCTTTACTCTTTGCTTT+CGG - chr6.3:4309392-4309411 None:intergenic 35.0%
ATTGCTCAGTACTATAGAGA+CGG + chr6.3:4311503-4311522 MS.gene20608:CDS 35.0%
CAAACACTTCAAAACTTTGG+AGG + chr6.3:4311556-4311575 MS.gene20608:CDS 35.0%
CAGTACAAGTAAGAAGAAAG+TGG + chr6.3:4311622-4311641 MS.gene20608:CDS 35.0%
CAGTCATCTTGTAACAACAA+AGG + chr6.3:4309859-4309878 MS.gene20608:intron 35.0%
CATTCAGATTCACTTGTGAT+TGG + chr6.3:4310428-4310447 MS.gene20608:CDS 35.0%
CCAATTAGAACTACGTGATA+TGG - chr6.3:4310135-4310154 None:intergenic 35.0%
CGCAAATTATTGGGAAAAGA+TGG + chr6.3:4311379-4311398 MS.gene20608:CDS 35.0%
CTTGTTTCCATAAGCTCTTA+AGG - chr6.3:4310742-4310761 None:intergenic 35.0%
GAAATATAGTCGACAATCTC+AGG + chr6.3:4310357-4310376 MS.gene20608:CDS 35.0%
GAATGAAATGAAGCGACATA+TGG + chr6.3:4311241-4311260 MS.gene20608:CDS 35.0%
GATTCTTCCAATCTTCAAAG+TGG + chr6.3:4308791-4308810 MS.gene20608:CDS 35.0%
GCTAATTTCATGAATGATGC+TGG + chr6.3:4311893-4311912 MS.gene20608:CDS 35.0%
GTAACAATCAATGGAGTTAC+CGG - chr6.3:4309978-4309997 None:intergenic 35.0%
GTACTAAGTGCGTGAATTTA+GGG - chr6.3:4309345-4309364 None:intergenic 35.0%
GTCATGATTTAAACCTTGAG+AGG + chr6.3:4310937-4310956 MS.gene20608:intron 35.0%
TAAACAACAACTTCCTCTCA+AGG - chr6.3:4310953-4310972 None:intergenic 35.0%
TATGCATATTCCTAGCTTCT+AGG + chr6.3:4309888-4309907 MS.gene20608:intron 35.0%
TGTGCTTATGTGTAAACAAG+TGG + chr6.3:4310603-4310622 MS.gene20608:intron 35.0%
TGTTACAAGATGACTGTGTT+TGG - chr6.3:4309855-4309874 None:intergenic 35.0%
TTCCAATCTTCAAAGTGGTT+TGG + chr6.3:4308796-4308815 MS.gene20608:CDS 35.0%
TTTGCCTCAAGAAAATCTCA+GGG - chr6.3:4311808-4311827 None:intergenic 35.0%
! AAAGTAGCTATATGAGTTGG+TGG + chr6.3:4311825-4311844 MS.gene20608:CDS 35.0%
! AACCAAACCACTTTGAAGAT+TGG - chr6.3:4308801-4308820 None:intergenic 35.0%
! ACTTCAAAACTTTGGAGGAA+TGG + chr6.3:4311561-4311580 MS.gene20608:CDS 35.0%
! ATCACAAATCACATGCCTTT+TGG + chr6.3:4310209-4310228 MS.gene20608:CDS 35.0%
! CCATTGATTGTTACTGGAAA+AGG + chr6.3:4309984-4310003 MS.gene20608:CDS 35.0%
! CCTTTTCCAGTAACAATCAA+TGG - chr6.3:4309987-4310006 None:intergenic 35.0%
! GAGCTGTTTAACTTTCCAAT+TGG + chr6.3:4309122-4309141 MS.gene20608:intron 35.0%
! GCTTGATGAGTTGAAATCTA+AGG + chr6.3:4308943-4308962 MS.gene20608:CDS 35.0%
! GGTATTTCCCCTTATCTTTT+TGG + chr6.3:4308964-4308983 MS.gene20608:intron 35.0%
! GTAACTCCATTGATTGTTAC+TGG + chr6.3:4309978-4309997 MS.gene20608:CDS 35.0%
! GTGTCATTAAGAGAGAAAGA+AGG - chr6.3:4308890-4308909 None:intergenic 35.0%
! GTTTCGGTTTTTCTTGTTAG+TGG + chr6.3:4311000-4311019 MS.gene20608:intron 35.0%
! TGATGAATAGCCTTGGAAAA+GGG - chr6.3:4310193-4310212 None:intergenic 35.0%
! TGATTTGTGATGAATAGCCT+TGG - chr6.3:4310200-4310219 None:intergenic 35.0%
! TTAAGGGTCCTAGAAAGTAT+TGG - chr6.3:4309195-4309214 None:intergenic 35.0%
!! CCATATCACGTAGTTCTAAT+TGG + chr6.3:4310132-4310151 MS.gene20608:CDS 35.0%
!! GCAGATTTTAGGTACAAATC+CGG + chr6.3:4309956-4309975 MS.gene20608:intron 35.0%
!!! CAGGCGTAAAGCATTTTTTA+AGG + chr6.3:4310376-4310395 MS.gene20608:CDS 35.0%
!!! CTCCAAAGTTTTGAAGTGTT+TGG - chr6.3:4311558-4311577 None:intergenic 35.0%
!!! TGGCCCAAATTTTGAGTTTT+TGG - chr6.3:4309283-4309302 None:intergenic 35.0%
AATTCACGCACTTAGTACGT+TGG + chr6.3:4309347-4309366 MS.gene20608:intron 40.0%
AGGATTGACACCAAACATTC+TGG + chr6.3:4310475-4310494 MS.gene20608:CDS 40.0%
ATTGTTACTGGAAAAGGCCT+CGG + chr6.3:4309990-4310009 MS.gene20608:CDS 40.0%
ATTTGGGCCACAAAATATCG+AGG + chr6.3:4309293-4309312 MS.gene20608:intron 40.0%
CATTCACGCAGTTAGTGTAT+TGG - chr6.3:4309467-4309486 None:intergenic 40.0%
CGAAGTGAAAGACAAAGAAG+AGG + chr6.3:4311718-4311737 MS.gene20608:CDS 40.0%
CGTACTAAGTGCGTGAATTT+AGG - chr6.3:4309346-4309365 None:intergenic 40.0%
CTTTGCCTCAAGAAAATCTC+AGG - chr6.3:4311809-4311828 None:intergenic 40.0%
GAACCAAATGTGATGCATAG+TGG - chr6.3:4310080-4310099 None:intergenic 40.0%
GACTGTTTGAGAGAGCTATA+TGG + chr6.3:4309731-4309750 MS.gene20608:intron 40.0%
GCTGGAAAGATTAAGCTGTA+TGG + chr6.3:4311911-4311930 MS.gene20608:CDS 40.0%
GGCAAAGTAGCTATATGAGT+TGG + chr6.3:4311822-4311841 MS.gene20608:CDS 40.0%
GTCCGAAAGCAAAGAGTAAA+GGG + chr6.3:4309387-4309406 MS.gene20608:intron 40.0%
TATGGTTGCAGATTTAGCAG+TGG + chr6.3:4308599-4308618 MS.gene20608:intron 40.0%
TTGCCTCAAGAAAATCTCAG+GGG - chr6.3:4311807-4311826 None:intergenic 40.0%
! AACTTTGGAGGAATGGTTAG+AGG + chr6.3:4311568-4311587 MS.gene20608:CDS 40.0%
! AAGGATGTTTCTATTCTGGC+TGG + chr6.3:4310395-4310414 MS.gene20608:CDS 40.0%
! ACATTTGGTTCACCTCTTGT+TGG + chr6.3:4310089-4310108 MS.gene20608:CDS 40.0%
! ATGATGGTGTTGGATTGTGT+TGG + chr6.3:4308711-4308730 MS.gene20608:CDS 40.0%
! CACAGAACCTCGATATTTTG+TGG - chr6.3:4309303-4309322 None:intergenic 40.0%
! GTGATGAATAGCCTTGGAAA+AGG - chr6.3:4310194-4310213 None:intergenic 40.0%
! GTTAGTGTATTGGTGACCAT+TGG - chr6.3:4309457-4309476 None:intergenic 40.0%
! TAGTACTGAGCAATAGCTAG+TGG - chr6.3:4311497-4311516 None:intergenic 40.0%
! TGATGTCTTCTTTTGACGGA+TGG - chr6.3:4311201-4311220 None:intergenic 40.0%
!! GTTGGTGATCGTTTGATCTT+TGG + chr6.3:4309365-4309384 MS.gene20608:intron 40.0%
!! TAGCTATATGAGTTGGTGGA+AGG + chr6.3:4311829-4311848 MS.gene20608:CDS 40.0%
ACACTAACTGCGTGAATGCA+AGG + chr6.3:4309469-4309488 MS.gene20608:intron 45.0%
AGTTTGCAGTTGCAAGCACT+AGG + chr6.3:4310455-4310474 MS.gene20608:CDS 45.0%
CAAGGATATCCCAACTGCAA+CGG + chr6.3:4309487-4309506 MS.gene20608:intron 45.0%
CGACCACTATGCATCACATT+TGG + chr6.3:4310074-4310093 MS.gene20608:CDS 45.0%
CTCACAAGTGCTTATGTCAC+CGG - chr6.3:4309712-4309731 None:intergenic 45.0%
GAAATGGATCCGTTGCAGTT+GGG - chr6.3:4309499-4309518 None:intergenic 45.0%
GAACTGAAGCCTCAAAGAGA+AGG + chr6.3:4311413-4311432 MS.gene20608:CDS 45.0%
GACATATGGCGCAACTTGAA+TGG + chr6.3:4311255-4311274 MS.gene20608:CDS 45.0%
GGTCCGAAAGCAAAGAGTAA+AGG + chr6.3:4309386-4309405 MS.gene20608:intron 45.0%
TGAAATGGATCCGTTGCAGT+TGG - chr6.3:4309500-4309519 None:intergenic 45.0%
TGCATTTGACCGCAACTATC+TGG + chr6.3:4310885-4310904 MS.gene20608:intron 45.0%
TTACAATCACAGTCACGCTG+TGG - chr6.3:4310912-4310931 None:intergenic 45.0%
! CATGCAAAGACCCTTTTCCA+AGG + chr6.3:4310180-4310199 MS.gene20608:CDS 45.0%
! CTTTTGGGCACATGTTGAAG+AGG + chr6.3:4311670-4311689 MS.gene20608:CDS 45.0%
! GTTTCTATTCTGGCTGGAGA+CGG + chr6.3:4310401-4310420 MS.gene20608:CDS 45.0%
! TGTCCCCTGAGATTTTCTTG+AGG + chr6.3:4311801-4311820 MS.gene20608:CDS 45.0%
! TTTCTATTCTGGCTGGAGAC+GGG + chr6.3:4310402-4310421 MS.gene20608:CDS 45.0%
!! TTTCGTAATCGCTGGCTCTT+CGG + chr6.3:4311443-4311462 MS.gene20608:CDS 45.0%
AATGCAGCGCCTTCTCTTTG+AGG - chr6.3:4311425-4311444 None:intergenic 50.0%
GCGGTCAAATGCAGCAAAGA+AGG - chr6.3:4310878-4310897 None:intergenic 50.0%
GCTCAGTACTATAGAGACGG+TGG + chr6.3:4311506-4311525 MS.gene20608:CDS 50.0%
GTGAAGCTATTGATCCTCCG+AGG - chr6.3:4310010-4310029 None:intergenic 50.0%
CGCTGTGGTCCAGATAGTTG+CGG - chr6.3:4310897-4310916 None:intergenic 55.0%
GCGCTGCATTTCGTAATCGC+TGG + chr6.3:4311435-4311454 MS.gene20608:CDS 55.0%
GTTACTGGAAAAGGCCTCGG+AGG + chr6.3:4309993-4310012 MS.gene20608:CDS 55.0%
!! CGTAATCGCTGGCTCTTCGG+TGG + chr6.3:4311446-4311465 MS.gene20608:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 4308480 4311958 4308480 ID=MS.gene20608
chr6.3 mRNA 4308480 4311958 4308480 ID=MS.gene20608.t1;Parent=MS.gene20608
chr6.3 exon 4308480 4308496 4308480 ID=MS.gene20608.t1.exon1;Parent=MS.gene20608.t1
chr6.3 CDS 4308480 4308496 4308480 ID=cds.MS.gene20608.t1;Parent=MS.gene20608.t1
chr6.3 exon 4308610 4308964 4308610 ID=MS.gene20608.t1.exon2;Parent=MS.gene20608.t1
chr6.3 CDS 4308610 4308964 4308610 ID=cds.MS.gene20608.t1;Parent=MS.gene20608.t1
chr6.3 exon 4309960 4310496 4309960 ID=MS.gene20608.t1.exon3;Parent=MS.gene20608.t1
chr6.3 CDS 4309960 4310496 4309960 ID=cds.MS.gene20608.t1;Parent=MS.gene20608.t1
chr6.3 exon 4311137 4311958 4311137 ID=MS.gene20608.t1.exon4;Parent=MS.gene20608.t1
chr6.3 CDS 4311137 4311958 4311137 ID=cds.MS.gene20608.t1;Parent=MS.gene20608.t1
Gene Sequence

>MS.gene20608

ATGGCACAACCTAAATTGTATGTAATAATTGAATATTAAACCATTATTATTTATTACTAATTCATATTGCATAACACTTTTATTGTTTTTATTTTATTTAGTTAATTTTGTATTTGGATTATGGTTGCAGATTTAGCAGTGGAATTGAACATGCATCATTTGTGACAAGCTATCAAATCCTTAAAAAAGCATGGAATGTTATCTCATCTAGTTCTAAAGACATAGTTACAAATGATGGTGTTGGATTGTGTTGGAAAGAGTACAAAGAACAAAGTCCTGATTTGACTATTATAGCCTTTGAAGCTACCATAGATTCTTCCAATCTTCAAAGTGGTTTGGTTTCATCTACTGATCTTAAAGGGAAGAAGAATTTTCATCAGTTTGACTTTTTATGCTCTAAGAAGAATCCTTCTTTCTCTCTTAATGACACTGCTGTTTCACTCTTTTGTGATAATTTTCAGAAGCTTGATGAGTTGAAATCTAAGGTATTTCCCCTTATCTTTTTGGATTATTTTTTTTAGGTTCTGATTCTAATTGAATTTTTAACTTAATTAATAAAAAGTTGCTATTTATTTTTTGCAAATTTATTGATTGTTGTGTAAAATGATCAAGGATTCATGGCTAATAACACTCTTTTGAATTGAGCTGTTTAACTTTCCAATTGGTCTTAATCACCAAAATATTTAAGATAGCAATATAAACACTTTAGGATCCAATACTTTCTAGGACCCTTAATAAAAGGAATTGTTTTTGGATCCTAGAAATTACTTGAAGATGTTATATTTTTACAAAATGAAGCACCAAAAACTCAAAATTTGGGCCACAAAATATCGAGGTTCTGTGTTGTTAGTCTTCTTGCACACCCTAAATTCACGCACTTAGTACGTTGGTGATCGTTTGATCTTTGGTCCGAAAGCAAAGAGTAAAGGGATTTAGATTCTATGTAGTCGTTTGATTGTTTGTCTGATCTTAATCCAATGGTCACCAATACACTAACTGCGTGAATGCAAGGATATCCCAACTGCAACGGATCCATTTCATTTGTTGTGCATATGAGTAATAATGATGATATTTGTGTGTTGCTGTTTTCATTTTTCTAATCTAGTTCCTTTTCGAGAAACAAGTGATTTGGAATTTGCATATTTATATGCCTTAAAATAGTGTTTAGGATAAAAATATGGAAAGGGGTTACTTTGAATTATGTAGACTAACTTGTGTAAGCTTATCAACCGGTGACATAAGCACTTGTGAGACTGTTTGAGAGAGCTATATGGAAGCACCTTATGATATGTCCATAAGTTGTTTTCAGCTTATTTCCATAATCTCTCTATTTTATCTTTTATTGTTAAAAGGGCTTAATTAAGTTGTTTATCCAAACACAGTCATCTTGTAACAACAAAGGAAATCTTATGCATATTCCTAGCTTCTAGGCATATATTGTTCTTCATATCTAAATCCTAATGCAACAATCTTAATGCAGATTTTAGGTACAAATCCGGTAACTCCATTGATTGTTACTGGAAAAGGCCTCGGAGGATCAATAGCTTCACTCTTCACAATATCACTATTAGATAACATTGGTTCAACAAAGAATCGACCACTATGCATCACATTTGGTTCACCTCTTGTTGGTGACAAGAAATTGCAACAAGCCATATCACGTAGTTCTAATTGGAATTCTTGCTTTATTCATGTTGTTTCATGCAAAGACCCTTTTCCAAGGCTATTCATCACAAATCACATGCCTTTTGGAACATTTATCTTTTGTTCTGATTCAGATTCTACTTGTTTTGAAAATCCCGAATCAAATTTGGAAATAATAATGACATTAAGCAAAATGCATGGTCAAAATCAAGGATTCAAATTAGATGAGTACGGAAATATAGTCGACAATCTCAGGCGTAAAGCATTTTTTAAGGATGTTTCTATTCTGGCTGGAGACGGGACTCATTCAGATTCACTTGTGATTGGTATCAGTTTGCAGTTGCAAGCACTAGGATTGACACCAAACATTCTGGTATGTGAAATTCTTCTAACTTATGCTTGAACAGTTAGAATCATTTAATTAAACCATATTAGGTTAGTTTTGTTTAACTTCAAGTAGTTCATTGGAAAATTTGTTTTGTGCTTATGTGTAAACAAGTGGTTATAGCATAAGTGCCTATCTTATAAGTGCTTATCTGTAAGTTATTTCTATAACAAAAGATAGAATAAAGTTGGACTGTTATTTATAAGATATGAGCTGTTTTCATAAACTATCCTTAAGAGCTTATGGAAACAAGTTGAAAACAACTAATGTATATATCAATTGCTTATGTCAGTAGATAATCTCAAATAAGTCAATTGTGATTCTTCGCTTGCTGAATGTTTATACGTTGTTAGATATGCTCTTTAACCTTCTTTGCTGCATTTGACCGCAACTATCTGGACCACAGCGTGACTGTGATTGTAATATCAGTCATGATTTAAACCTTGAGAGGAAGTTGTTGTTTAAAATGCTTATGATTAGGTACAATATTCGTTTCGGTTTTTCTTGTTAGTGGTTCTAGAGAAGTTTATGTAAATTGACTCATAGACTTGTATTATGTGTAATCATACTACTACTAGTAAACTCAAATTTTTTCTGACCTCATTTCTAAAATTGACTTGGGATGCAGAAAAAGAATGACATTGATATCAATGTTCTTGAAACAAAGATAAAAAGACTAGAAGAACTATCCATCCGTCAAAAGAAGACATCATTTGATCCATCCAAGAAACTGAATGAAATGAAGCGACATATGGCGCAACTTGAATGGTACAAAATGAAAACAAAAAATCTTCACATAGGGTACTATGACAGCTACAAAAACAAGAACGCACAATTTGATCATGATGTTGTTGTATTTCATAAAATACTCGCAAATTATTGGGAAAAGATGGTTGAAGAAGCTGAACTGAAGCCTCAAAGAGAAGGCGCTGCATTTCGTAATCGCTGGCTCTTCGGTGGAACTACATATAGAAGAATGGTTGAACCACTAGCTATTGCTCAGTACTATAGAGACGGTGGTAAAGATTATGTCAATAAACAAAGATCCAAACACTTCAAAACTTTGGAGGAATGGTTAGAGGAAGACTCGACAAAGACTAAAACTGAATTAAACAGTACAAGTAAGAAGAAAGTGGAAGTGATTTTGACTATAGATTCTTGCTTTTGGGCACATGTTGAAGAGGCTATACTTGCATGCAATGAGTTGAACGAAGTGAAAGACAAAGAAGAGGTATTGAATAAATTGGTTGAATTTGAGGACTATGTTTATGGTTTGCTTAAGGATTATGCAGTGTCCCCTGAGATTTTCTTGAGGCAAAGTAGCTATATGAGTTGGTGGAAGGATTACAAAGCTATTAAGGGATCTTCATACACTTCAAAACTTGCTAATTTCATGAATGATGCTGGAAAGATTAAGCTGTATGGTTTGGGAGCTTATGATTTTCCTTGA

Protein sequence

>MS.gene20608.t1

MAQPKLFSSGIEHASFVTSYQILKKAWNVISSSSKDIVTNDGVGLCWKEYKEQSPDLTIIAFEATIDSSNLQSGLVSSTDLKGKKNFHQFDFLCSKKNPSFSLNDTAVSLFCDNFQKLDELKSKILGTNPVTPLIVTGKGLGGSIASLFTISLLDNIGSTKNRPLCITFGSPLVGDKKLQQAISRSSNWNSCFIHVVSCKDPFPRLFITNHMPFGTFIFCSDSDSTCFENPESNLEIIMTLSKMHGQNQGFKLDEYGNIVDNLRRKAFFKDVSILAGDGTHSDSLVIGISLQLQALGLTPNILKKNDIDINVLETKIKRLEELSIRQKKTSFDPSKKLNEMKRHMAQLEWYKMKTKNLHIGYYDSYKNKNAQFDHDVVVFHKILANYWEKMVEEAELKPQREGAAFRNRWLFGGTTYRRMVEPLAIAQYYRDGGKDYVNKQRSKHFKTLEEWLEEDSTKTKTELNSTSKKKVEVILTIDSCFWAHVEEAILACNELNEVKDKEEVLNKLVEFEDYVYGLLKDYAVSPEIFLRQSSYMSWWKDYKAIKGSSYTSKLANFMNDAGKIKLYGLGAYDFP