Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21794.t1 | GAU18892.1 | 91.1 | 168 | 15 | 0 | 1 | 168 | 1 | 168 | 1.60E-55 | 225.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21794.t1 | Q9LZH5 | 36.5 | 115 | 56 | 3 | 20 | 117 | 30 | 144 | 1.5e-09 | 64.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21794.t1 | A0A2Z6LLS6 | 91.1 | 168 | 15 | 0 | 1 | 168 | 1 | 168 | 1.1e-55 | 225.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene21794 | 0.804299 | 2.31E-49 | -1.69E-46 |
| MS.gene049611 | MS.gene21794 | 0.828012 | 1.14E-54 | -1.69E-46 |
| MS.gene049634 | MS.gene21794 | 0.807704 | 4.44E-50 | -1.69E-46 |
| MS.gene050082 | MS.gene21794 | 0.837913 | 3.93E-57 | -1.69E-46 |
| MS.gene050381 | MS.gene21794 | 0.864461 | 1.20E-64 | -1.69E-46 |
| MS.gene050809 | MS.gene21794 | 0.814793 | 1.29E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene21794 | -0.804652 | 1.95E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene21794 | -0.809109 | 2.23E-50 | -1.69E-46 |
| MS.gene050883 | MS.gene21794 | 0.808257 | 3.38E-50 | -1.69E-46 |
| MS.gene05104 | MS.gene21794 | 0.810976 | 8.82E-51 | -1.69E-46 |
| MS.gene051127 | MS.gene21794 | 0.824458 | 7.98E-54 | -1.69E-46 |
| MS.gene051138 | MS.gene21794 | 0.817222 | 3.69E-52 | -1.69E-46 |
| MS.gene051632 | MS.gene21794 | 0.81915 | 1.35E-52 | -1.69E-46 |
| MS.gene051946 | MS.gene21794 | 0.81074 | 9.92E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene21794 | -0.803398 | 3.55E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene21794 | 0.802919 | 4.46E-49 | -1.69E-46 |
| MS.gene05234 | MS.gene21794 | 0.806001 | 1.02E-49 | -1.69E-46 |
| MS.gene05240 | MS.gene21794 | 0.803328 | 3.67E-49 | -1.69E-46 |
| MS.gene052805 | MS.gene21794 | 0.800508 | 1.39E-48 | -1.69E-46 |
| MS.gene053420 | MS.gene21794 | 0.844684 | 6.49E-59 | -1.69E-46 |
| MS.gene053488 | MS.gene21794 | 0.817184 | 3.76E-52 | -1.69E-46 |
| MS.gene054706 | MS.gene21794 | 0.814396 | 1.57E-51 | -1.69E-46 |
| MS.gene055124 | MS.gene21794 | 0.809698 | 1.66E-50 | -1.69E-46 |
| MS.gene055154 | MS.gene21794 | 0.82414 | 9.48E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene21794 | -0.80742 | 5.10E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene21794 | -0.811623 | 6.38E-51 | -1.69E-46 |
| MS.gene056313 | MS.gene21794 | 0.80881 | 2.58E-50 | -1.69E-46 |
| MS.gene057261 | MS.gene21794 | 0.815697 | 8.09E-52 | -1.69E-46 |
| MS.gene057717 | MS.gene21794 | 0.833639 | 4.75E-56 | -1.69E-46 |
| MS.gene058067 | MS.gene21794 | 0.850533 | 1.60E-60 | -1.69E-46 |
| MS.gene058068 | MS.gene21794 | 0.924963 | 3.49E-90 | -1.69E-46 |
| MS.gene058099 | MS.gene21794 | 0.828392 | 9.22E-55 | -1.69E-46 |
| MS.gene058157 | MS.gene21794 | -0.809667 | 1.69E-50 | -1.69E-46 |
| MS.gene058171 | MS.gene21794 | 0.819804 | 9.58E-53 | -1.69E-46 |
| MS.gene058173 | MS.gene21794 | 0.808112 | 3.63E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene21794 | 0.815639 | 8.34E-52 | -1.69E-46 |
| MS.gene058269 | MS.gene21794 | 0.805396 | 1.36E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene21794 | -0.829441 | 5.14E-55 | -1.69E-46 |
| MS.gene059069 | MS.gene21794 | 0.800345 | 1.51E-48 | -1.69E-46 |
| MS.gene059070 | MS.gene21794 | 0.805983 | 1.03E-49 | -1.69E-46 |
| MS.gene059223 | MS.gene21794 | 0.829029 | 6.47E-55 | -1.69E-46 |
| MS.gene060205 | MS.gene21794 | 0.800784 | 1.23E-48 | -1.69E-46 |
| MS.gene06077 | MS.gene21794 | -0.806714 | 7.19E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21794.t1 | MTR_5g006950 | 95.238 | 168 | 8 | 0 | 1 | 168 | 1 | 168 | 9.26e-109 | 307 |
| MS.gene21794.t1 | MTR_1g103490 | 64.848 | 165 | 37 | 3 | 1 | 164 | 1 | 145 | 2.10e-64 | 194 |
| MS.gene21794.t1 | MTR_1g103470 | 50.595 | 168 | 61 | 3 | 1 | 168 | 1 | 146 | 6.16e-39 | 130 |
| MS.gene21794.t1 | MTR_7g095230 | 51.701 | 147 | 64 | 4 | 1 | 141 | 1 | 146 | 6.08e-38 | 128 |
| MS.gene21794.t1 | MTR_1g103450 | 53.906 | 128 | 51 | 3 | 1 | 127 | 1 | 121 | 1.98e-37 | 126 |
| MS.gene21794.t1 | MTR_1g071730 | 51.235 | 162 | 53 | 1 | 1 | 162 | 1 | 136 | 1.03e-31 | 111 |
| MS.gene21794.t1 | MTR_1g071730 | 62.264 | 106 | 40 | 0 | 1 | 106 | 1 | 106 | 3.90e-27 | 99.0 |
| MS.gene21794.t1 | MTR_1g097720 | 57.955 | 88 | 34 | 2 | 1 | 87 | 1 | 86 | 1.25e-24 | 91.7 |
| MS.gene21794.t1 | MTR_5g070360 | 31.148 | 183 | 98 | 6 | 7 | 162 | 4 | 185 | 3.75e-16 | 72.4 |
| MS.gene21794.t1 | MTR_3g079210 | 42.353 | 85 | 46 | 2 | 24 | 105 | 46 | 130 | 1.16e-15 | 71.6 |
| MS.gene21794.t1 | MTR_2g008560 | 35.606 | 132 | 73 | 5 | 7 | 127 | 4 | 134 | 1.41e-14 | 68.2 |
| MS.gene21794.t1 | MTR_2g008580 | 37.805 | 82 | 48 | 2 | 26 | 105 | 33 | 113 | 1.97e-11 | 60.1 |
| MS.gene21794.t1 | MTR_8g085560 | 31.092 | 119 | 72 | 3 | 25 | 134 | 33 | 150 | 2.54e-11 | 59.7 |
| MS.gene21794.t1 | MTR_5g006940 | 33.571 | 140 | 81 | 7 | 1 | 130 | 1 | 138 | 2.58e-11 | 60.1 |
| MS.gene21794.t1 | MTR_3g083760 | 36.486 | 74 | 46 | 1 | 25 | 97 | 28 | 101 | 7.61e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21794.t1 | AT3G22600 | 53.757 | 173 | 67 | 6 | 5 | 168 | 2 | 170 | 1.80e-50 | 160 |
| MS.gene21794.t1 | AT4G14815 | 47.500 | 160 | 68 | 4 | 5 | 163 | 2 | 146 | 9.19e-39 | 129 |
| MS.gene21794.t1 | AT2G48130 | 40.437 | 183 | 94 | 5 | 1 | 168 | 1 | 183 | 8.58e-33 | 115 |
| MS.gene21794.t1 | AT2G48130 | 40.437 | 183 | 94 | 5 | 1 | 168 | 1 | 183 | 8.58e-33 | 115 |
| MS.gene21794.t1 | AT2G48130 | 40.437 | 183 | 94 | 5 | 1 | 168 | 1 | 183 | 8.58e-33 | 115 |
| MS.gene21794.t1 | AT2G48130 | 40.437 | 183 | 94 | 5 | 1 | 168 | 1 | 183 | 8.58e-33 | 115 |
| MS.gene21794.t1 | AT2G48130 | 40.437 | 183 | 94 | 5 | 1 | 168 | 1 | 183 | 8.58e-33 | 115 |
| MS.gene21794.t1 | AT2G48130 | 40.437 | 183 | 94 | 5 | 1 | 168 | 1 | 183 | 8.58e-33 | 115 |
| MS.gene21794.t1 | AT1G03103 | 41.520 | 171 | 83 | 6 | 6 | 161 | 1 | 169 | 1.20e-27 | 102 |
| MS.gene21794.t1 | AT3G43720 | 34.545 | 165 | 86 | 5 | 21 | 168 | 31 | 190 | 2.47e-17 | 75.9 |
| MS.gene21794.t1 | AT5G09370 | 40.000 | 90 | 50 | 2 | 26 | 113 | 26 | 113 | 6.31e-17 | 73.9 |
| MS.gene21794.t1 | AT5G09370 | 40.000 | 90 | 50 | 2 | 26 | 113 | 26 | 113 | 6.66e-17 | 73.2 |
| MS.gene21794.t1 | AT5G09370 | 40.000 | 90 | 50 | 2 | 26 | 113 | 26 | 113 | 7.42e-17 | 73.6 |
| MS.gene21794.t1 | AT3G43720 | 34.337 | 166 | 87 | 5 | 21 | 168 | 31 | 192 | 1.31e-16 | 73.9 |
| MS.gene21794.t1 | AT1G55260 | 27.389 | 157 | 107 | 3 | 1 | 151 | 44 | 199 | 1.92e-15 | 71.2 |
| MS.gene21794.t1 | AT2G13820 | 27.711 | 166 | 112 | 5 | 1 | 161 | 1 | 163 | 9.94e-15 | 68.6 |
| MS.gene21794.t1 | AT1G55260 | 28.750 | 160 | 104 | 5 | 1 | 151 | 44 | 202 | 1.10e-14 | 69.3 |
| MS.gene21794.t1 | AT2G13820 | 27.711 | 166 | 112 | 5 | 1 | 161 | 13 | 175 | 1.34e-14 | 68.2 |
| MS.gene21794.t1 | AT2G13820 | 31.034 | 116 | 74 | 4 | 1 | 113 | 1 | 113 | 7.13e-14 | 65.1 |
| MS.gene21794.t1 | AT4G08670 | 33.951 | 162 | 87 | 6 | 26 | 168 | 46 | 206 | 8.88e-14 | 66.6 |
| MS.gene21794.t1 | AT2G44290 | 32.075 | 159 | 90 | 6 | 6 | 148 | 9 | 165 | 7.12e-13 | 64.3 |
| MS.gene21794.t1 | AT1G36150 | 33.333 | 129 | 78 | 4 | 26 | 151 | 43 | 166 | 1.13e-11 | 61.6 |
| MS.gene21794.t1 | AT2G48140 | 34.884 | 129 | 66 | 5 | 8 | 129 | 4 | 121 | 1.14e-11 | 60.8 |
| MS.gene21794.t1 | AT3G22580 | 38.739 | 111 | 56 | 4 | 5 | 105 | 2 | 110 | 2.12e-11 | 58.5 |
| MS.gene21794.t1 | AT2G48140 | 35.965 | 114 | 65 | 4 | 8 | 114 | 4 | 116 | 2.64e-11 | 58.5 |
| MS.gene21794.t1 | AT5G64080 | 30.137 | 146 | 83 | 5 | 28 | 166 | 43 | 176 | 4.01e-11 | 58.9 |
| MS.gene21794.t1 | AT2G44300 | 39.726 | 73 | 43 | 1 | 25 | 96 | 32 | 104 | 4.93e-11 | 59.3 |
Find 52 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCCGTTGGTTCTTATTT+TGG | 0.199878 | 5.2:+1537764 | MS.gene21794:CDS |
| CAGCAAAATGAATATGAGTT+TGG | 0.304193 | 5.2:+1536976 | MS.gene21794:CDS |
| AATGAATATGAGTTTGGTTT+TGG | 0.324175 | 5.2:+1536982 | MS.gene21794:CDS |
| GTTCCTGCTGGTGAGTCTGC+TGG | 0.326138 | 5.2:-1537541 | None:intergenic |
| AACGGAATTGACAGCTTGAT+TGG | 0.350335 | 5.2:-1537750 | None:intergenic |
| GTACCTGATGGAACTGAGTT+TGG | 0.355549 | 5.2:-1537577 | None:intergenic |
| AATTCCTCAACCCCGTCTTC+AGG | 0.363035 | 5.2:+1537100 | MS.gene21794:CDS |
| TTCCTGCTGGTGAGTCTGCT+GGG | 0.376602 | 5.2:-1537540 | None:intergenic |
| AGTCAGTGTAAAACTAATAA+TGG | 0.381064 | 5.2:+1537274 | MS.gene21794:CDS |
| GCCTATGTCAGGTTCTCGGC+GGG | 0.418113 | 5.2:+1537167 | MS.gene21794:CDS |
| GACTCTGCTTCTGTTCCTGC+TGG | 0.439322 | 5.2:-1537553 | None:intergenic |
| AGCCTTGCCTGGTGCTTGCA+AGG | 0.452642 | 5.2:+1537234 | MS.gene21794:CDS |
| CAGCTTGATTGGATTTCCAC+TGG | 0.465066 | 5.2:-1537739 | None:intergenic |
| TCCATCACCGGTTGAGGGAG+TGG | 0.468250 | 5.2:-1537712 | None:intergenic |
| TCAAAATCCACTCCCTCAAC+CGG | 0.469317 | 5.2:+1537705 | MS.gene21794:CDS |
| TTTACACTGACTGGTGGGTG+GGG | 0.471462 | 5.2:-1537263 | None:intergenic |
| GGATGATCCATCACCGGTTG+AGG | 0.472460 | 5.2:-1537718 | None:intergenic |
| GTTTGCACCTTGCAAGCACC+AGG | 0.476162 | 5.2:-1537241 | None:intergenic |
| TTGAGCAGCATCCTGAAGAC+GGG | 0.489604 | 5.2:-1537111 | None:intergenic |
| TCCACTCCCTCAACCGGTGA+TGG | 0.490607 | 5.2:+1537711 | MS.gene21794:CDS |
| TATAGTTAAGACAAGGTGAT+AGG | 0.493717 | 5.2:-1537069 | None:intergenic |
| CTATGTCAGGTTCTCGGCGG+GGG | 0.499514 | 5.2:+1537169 | MS.gene21794:CDS |
| ACTCAGGCTCTAGCCTTGCC+TGG | 0.500358 | 5.2:+1537223 | MS.gene21794:CDS |
| CACCTTGCAAGCACCAGGCA+AGG | 0.514952 | 5.2:-1537236 | None:intergenic |
| CTATGCCTATGTCAGGTTCT+CGG | 0.519779 | 5.2:+1537163 | MS.gene21794:CDS |
| ATCGAGTTGTACAAATGTCT+TGG | 0.528842 | 5.2:+1537042 | MS.gene21794:CDS |
| CCTTGTCTTAACTATATCAC+AGG | 0.529529 | 5.2:+1537076 | MS.gene21794:CDS |
| TCTCCAAACTCAGTTCCATC+AGG | 0.538578 | 5.2:+1537574 | MS.gene21794:CDS |
| GCATCCTGAAGACGGGGTTG+AGG | 0.545184 | 5.2:-1537104 | None:intergenic |
| ACAACCACTATGCCTATGTC+AGG | 0.550990 | 5.2:+1537156 | MS.gene21794:CDS |
| TCCACTGGATGATCCATCAC+CGG | 0.555144 | 5.2:-1537724 | None:intergenic |
| TGTTCAGAAAACTGAGGCAT+AGG | 0.555263 | 5.2:-1537793 | None:intergenic |
| AATCAAGCTGTCAATTCCGT+TGG | 0.560006 | 5.2:+1537752 | MS.gene21794:CDS |
| TTTGAGCAGCATCCTGAAGA+CGG | 0.563609 | 5.2:-1537112 | None:intergenic |
| GATGATCCATCACCGGTTGA+GGG | 0.571557 | 5.2:-1537717 | None:intergenic |
| TCCCCAGCAGACTCACCAGC+AGG | 0.577866 | 5.2:+1537538 | MS.gene21794:CDS |
| CTGCTCAAACCTTGCCAGTG+TGG | 0.578926 | 5.2:+1537126 | MS.gene21794:CDS |
| GTGAATTCACCACACTGGCA+AGG | 0.582240 | 5.2:-1537135 | None:intergenic |
| GTAATCGCAATGTTGTGCGC+TGG | 0.583284 | 5.2:+1537007 | MS.gene21794:CDS |
| TCCTGCTGGTGAGTCTGCTG+GGG | 0.602035 | 5.2:-1537539 | None:intergenic |
| TGCCTATGTCAGGTTCTCGG+CGG | 0.603440 | 5.2:+1537166 | MS.gene21794:CDS |
| CCCCGCCGAGAACCTGACAT+AGG | 0.604243 | 5.2:-1537168 | None:intergenic |
| AATCAGCATCAATCAAACTC+AGG | 0.612879 | 5.2:+1537207 | MS.gene21794:CDS |
| AGAACCTGACATAGGCATAG+TGG | 0.618190 | 5.2:-1537160 | None:intergenic |
| CCTATGTCAGGTTCTCGGCG+GGG | 0.623545 | 5.2:+1537168 | MS.gene21794:CDS |
| GCTGCCAAAATAAGAACCAA+CGG | 0.650717 | 5.2:-1537768 | None:intergenic |
| ACCGGTGATGGATCATCCAG+TGG | 0.660594 | 5.2:+1537723 | MS.gene21794:CDS |
| CCTGTGATATAGTTAAGACA+AGG | 0.669942 | 5.2:-1537076 | None:intergenic |
| CTTGTCTTAACTATATCACA+GGG | 0.674749 | 5.2:+1537077 | MS.gene21794:CDS |
| TGGTTGTGAATTCACCACAC+TGG | 0.698930 | 5.2:-1537140 | None:intergenic |
| TGAGCAGCATCCTGAAGACG+GGG | 0.700847 | 5.2:-1537110 | None:intergenic |
| TCAGTATGTTCAGAAAACTG+AGG | 0.728921 | 5.2:-1537799 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATATAGTTTAGAATAT+GGG | - | chr5.2:1537479-1537498 | None:intergenic | 10.0% |
| !!! | GAAATATATAGTTTAGAATA+TGG | - | chr5.2:1537480-1537499 | None:intergenic | 15.0% |
| !! | CAAATGAATTTCAACTTAAA+TGG | - | chr5.2:1537674-1537693 | None:intergenic | 20.0% |
| ! | AGTCAGTGTAAAACTAATAA+TGG | + | chr5.2:1537274-1537293 | MS.gene21794:CDS | 25.0% |
| ! | ATCTCAATGTTCATATAGTT+AGG | - | chr5.2:1537368-1537387 | None:intergenic | 25.0% |
| ! | TCTCAATGTTCATATAGTTA+GGG | - | chr5.2:1537367-1537386 | None:intergenic | 25.0% |
| ! | TTCAACTTAAATGGTTAACA+AGG | - | chr5.2:1537665-1537684 | None:intergenic | 25.0% |
| !!! | AATGAATATGAGTTTGGTTT+TGG | + | chr5.2:1536982-1537001 | MS.gene21794:CDS | 25.0% |
| !!! | ACTTATCTTTTTGAGTATCA+AGG | - | chr5.2:1537452-1537471 | None:intergenic | 25.0% |
| !!! | ATTATTAGTTTTACACTGAC+TGG | - | chr5.2:1537275-1537294 | None:intergenic | 25.0% |
| !!! | TTAAGTTGAAATTCATTTGC+AGG | + | chr5.2:1537675-1537694 | MS.gene21794:intron | 25.0% |
| AATGTTCATATAGTTAGGGT+TGG | - | chr5.2:1537363-1537382 | None:intergenic | 30.0% | |
| CAGCAAAATGAATATGAGTT+TGG | + | chr5.2:1536976-1536995 | MS.gene21794:CDS | 30.0% | |
| CTTGTCTTAACTATATCACA+GGG | + | chr5.2:1537077-1537096 | MS.gene21794:CDS | 30.0% | |
| TATAGTTAAGACAAGGTGAT+AGG | - | chr5.2:1537072-1537091 | None:intergenic | 30.0% | |
| !!! | AATTCCGTTGGTTCTTATTT+TGG | + | chr5.2:1537764-1537783 | MS.gene21794:CDS | 30.0% |
| AATCAGCATCAATCAAACTC+AGG | + | chr5.2:1537207-1537226 | MS.gene21794:CDS | 35.0% | |
| CATCAGGTACTAACATATTG+GGG | + | chr5.2:1537590-1537609 | MS.gene21794:intron | 35.0% | |
| CCATCAGGTACTAACATATT+GGG | + | chr5.2:1537589-1537608 | MS.gene21794:intron | 35.0% | |
| CCTGTGATATAGTTAAGACA+AGG | - | chr5.2:1537079-1537098 | None:intergenic | 35.0% | |
| CCTTGTCTTAACTATATCAC+AGG | + | chr5.2:1537076-1537095 | MS.gene21794:CDS | 35.0% | |
| TCCATCAGGTACTAACATAT+TGG | + | chr5.2:1537588-1537607 | MS.gene21794:intron | 35.0% | |
| TGAAATTCATTTGCAGGAAC+CGG | + | chr5.2:1537681-1537700 | MS.gene21794:intron | 35.0% | |
| TGATCATCCAATTTGAACCT+TGG | + | chr5.2:1537639-1537658 | MS.gene21794:intron | 35.0% | |
| TTAAATGGTTAACAAGGCCA+AGG | - | chr5.2:1537659-1537678 | None:intergenic | 35.0% | |
| ! | ATCGAGTTGTACAAATGTCT+TGG | + | chr5.2:1537042-1537061 | MS.gene21794:CDS | 35.0% |
| !!! | ATTAGTTTTACACTGACTGG+TGG | - | chr5.2:1537272-1537291 | None:intergenic | 35.0% |
| !!! | TTAGTTTTACACTGACTGGT+GGG | - | chr5.2:1537271-1537290 | None:intergenic | 35.0% |
| AACAAGGCCAAGGTTCAAAT+TGG | - | chr5.2:1537649-1537668 | None:intergenic | 40.0% | |
| AACGGAATTGACAGCTTGAT+TGG | - | chr5.2:1537753-1537772 | None:intergenic | 40.0% | |
| AATCAAGCTGTCAATTCCGT+TGG | + | chr5.2:1537752-1537771 | MS.gene21794:CDS | 40.0% | |
| CCCAATATGTTAGTACCTGA+TGG | - | chr5.2:1537592-1537611 | None:intergenic | 40.0% | |
| GCTGCCAAAATAAGAACCAA+CGG | - | chr5.2:1537771-1537790 | None:intergenic | 40.0% | |
| ACAACCACTATGCCTATGTC+AGG | + | chr5.2:1537156-1537175 | MS.gene21794:CDS | 45.0% | |
| AGAACCTGACATAGGCATAG+TGG | - | chr5.2:1537163-1537182 | None:intergenic | 45.0% | |
| CAGCTTGATTGGATTTCCAC+TGG | - | chr5.2:1537742-1537761 | None:intergenic | 45.0% | |
| CTATGCCTATGTCAGGTTCT+CGG | + | chr5.2:1537163-1537182 | MS.gene21794:CDS | 45.0% | |
| GTACCTGATGGAACTGAGTT+TGG | - | chr5.2:1537580-1537599 | None:intergenic | 45.0% | |
| TCAAAATCCACTCCCTCAAC+CGG | + | chr5.2:1537705-1537724 | MS.gene21794:CDS | 45.0% | |
| TCTCCAAACTCAGTTCCATC+AGG | + | chr5.2:1537574-1537593 | MS.gene21794:CDS | 45.0% | |
| TGGTTGTGAATTCACCACAC+TGG | - | chr5.2:1537143-1537162 | None:intergenic | 45.0% | |
| TTTGAGCAGCATCCTGAAGA+CGG | - | chr5.2:1537115-1537134 | None:intergenic | 45.0% | |
| !! | TGAGGGAGTGGATTTTGATC+CGG | - | chr5.2:1537703-1537722 | None:intergenic | 45.0% |
| !! | TTTTACACTGACTGGTGGGT+GGG | - | chr5.2:1537267-1537286 | None:intergenic | 45.0% |
| AATTCCTCAACCCCGTCTTC+AGG | + | chr5.2:1537100-1537119 | MS.gene21794:CDS | 50.0% | |
| GTAATCGCAATGTTGTGCGC+TGG | + | chr5.2:1537007-1537026 | MS.gene21794:CDS | 50.0% | |
| GTGAATTCACCACACTGGCA+AGG | - | chr5.2:1537138-1537157 | None:intergenic | 50.0% | |
| TCCACTGGATGATCCATCAC+CGG | - | chr5.2:1537727-1537746 | None:intergenic | 50.0% | |
| TTGAGCAGCATCCTGAAGAC+GGG | - | chr5.2:1537114-1537133 | None:intergenic | 50.0% | |
| ! | GATGATCCATCACCGGTTGA+GGG | - | chr5.2:1537720-1537739 | None:intergenic | 50.0% |
| ! | TTTACACTGACTGGTGGGTG+GGG | - | chr5.2:1537266-1537285 | None:intergenic | 50.0% |
| !! | GTTTTACACTGACTGGTGGG+TGG | - | chr5.2:1537268-1537287 | None:intergenic | 50.0% |
| CTGCTCAAACCTTGCCAGTG+TGG | + | chr5.2:1537126-1537145 | MS.gene21794:CDS | 55.0% | |
| GACTCTGCTTCTGTTCCTGC+TGG | - | chr5.2:1537556-1537575 | None:intergenic | 55.0% | |
| GTTTGCACCTTGCAAGCACC+AGG | - | chr5.2:1537244-1537263 | None:intergenic | 55.0% | |
| TGAGCAGCATCCTGAAGACG+GGG | - | chr5.2:1537113-1537132 | None:intergenic | 55.0% | |
| TGCCTATGTCAGGTTCTCGG+CGG | + | chr5.2:1537166-1537185 | MS.gene21794:CDS | 55.0% | |
| TTCCTGCTGGTGAGTCTGCT+GGG | - | chr5.2:1537543-1537562 | None:intergenic | 55.0% | |
| ! | GGATGATCCATCACCGGTTG+AGG | - | chr5.2:1537721-1537740 | None:intergenic | 55.0% |
| !! | ACCGGTGATGGATCATCCAG+TGG | + | chr5.2:1537723-1537742 | MS.gene21794:CDS | 55.0% |
| AGCCTTGCCTGGTGCTTGCA+AGG | + | chr5.2:1537234-1537253 | MS.gene21794:CDS | 60.0% | |
| CACCTTGCAAGCACCAGGCA+AGG | - | chr5.2:1537239-1537258 | None:intergenic | 60.0% | |
| CCTATGTCAGGTTCTCGGCG+GGG | + | chr5.2:1537168-1537187 | MS.gene21794:CDS | 60.0% | |
| CTATGTCAGGTTCTCGGCGG+GGG | + | chr5.2:1537169-1537188 | MS.gene21794:CDS | 60.0% | |
| GCATCCTGAAGACGGGGTTG+AGG | - | chr5.2:1537107-1537126 | None:intergenic | 60.0% | |
| GCCTATGTCAGGTTCTCGGC+GGG | + | chr5.2:1537167-1537186 | MS.gene21794:CDS | 60.0% | |
| GTTCCTGCTGGTGAGTCTGC+TGG | - | chr5.2:1537544-1537563 | None:intergenic | 60.0% | |
| TCCACTCCCTCAACCGGTGA+TGG | + | chr5.2:1537711-1537730 | MS.gene21794:CDS | 60.0% | |
| TCCTGCTGGTGAGTCTGCTG+GGG | - | chr5.2:1537542-1537561 | None:intergenic | 60.0% | |
| ! | TCCATCACCGGTTGAGGGAG+TGG | - | chr5.2:1537715-1537734 | None:intergenic | 60.0% |
| !! | ACTCAGGCTCTAGCCTTGCC+TGG | + | chr5.2:1537223-1537242 | MS.gene21794:CDS | 60.0% |
| CCCCGCCGAGAACCTGACAT+AGG | - | chr5.2:1537171-1537190 | None:intergenic | 65.0% | |
| TCCCCAGCAGACTCACCAGC+AGG | + | chr5.2:1537538-1537557 | MS.gene21794:CDS | 65.0% | |
| ! | GGCGGGGGTGCATCGTCGCT+GGG | + | chr5.2:1537184-1537203 | MS.gene21794:CDS | 75.0% |
| !! | CGGCGGGGGTGCATCGTCGC+TGG | + | chr5.2:1537183-1537202 | MS.gene21794:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 1536968 | 1537812 | 1536968 | ID=MS.gene21794 |
| chr5.2 | mRNA | 1536968 | 1537812 | 1536968 | ID=MS.gene21794.t1;Parent=MS.gene21794 |
| chr5.2 | exon | 1536968 | 1537295 | 1536968 | ID=MS.gene21794.t1.exon1;Parent=MS.gene21794.t1 |
| chr5.2 | CDS | 1536968 | 1537295 | 1536968 | ID=cds.MS.gene21794.t1;Parent=MS.gene21794.t1 |
| chr5.2 | exon | 1537533 | 1537595 | 1537533 | ID=MS.gene21794.t1.exon2;Parent=MS.gene21794.t1 |
| chr5.2 | CDS | 1537533 | 1537595 | 1537533 | ID=cds.MS.gene21794.t1;Parent=MS.gene21794.t1 |
| chr5.2 | exon | 1537697 | 1537812 | 1537697 | ID=MS.gene21794.t1.exon3;Parent=MS.gene21794.t1 |
| chr5.2 | CDS | 1537697 | 1537812 | 1537697 | ID=cds.MS.gene21794.t1;Parent=MS.gene21794.t1 |
| Gene Sequence |
| Protein sequence |
