Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24734.t1 | KAE8009676.1 | 100 | 92 | 0 | 0 | 1 | 92 | 312 | 403 | 3.10E-45 | 190.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24734.t1 | Q1H595 | 93.5 | 92 | 6 | 0 | 1 | 92 | 2 | 93 | 4.5e-45 | 181.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24734.t1 | G7KQV7 | 100.0 | 92 | 0 | 0 | 1 | 92 | 2 | 93 | 2.2e-45 | 190.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006712 | MS.gene24734 | PPI |
| MS.gene24734 | MS.gene23567 | PPI |
| MS.gene24734 | MS.gene073734 | PPI |
| MS.gene24734 | MS.gene83565 | PPI |
| MS.gene43700 | MS.gene24734 | PPI |
| MS.gene051241 | MS.gene24734 | PPI |
| MS.gene24734 | MS.gene067444 | PPI |
| MS.gene24734 | MS.gene85931 | PPI |
| MS.gene045470 | MS.gene24734 | PPI |
| MS.gene24734 | MS.gene86968 | PPI |
| MS.gene24734 | MS.gene009798 | PPI |
| MS.gene24734 | MS.gene56983 | PPI |
| MS.gene50211 | MS.gene24734 | PPI |
| MS.gene24734 | MS.gene035486 | PPI |
| MS.gene24734 | MS.gene023131 | PPI |
| MS.gene24734 | MS.gene36469 | PPI |
| MS.gene59503 | MS.gene24734 | PPI |
| MS.gene24734 | MS.gene028322 | PPI |
| MS.gene24734 | MS.gene44813 | PPI |
| MS.gene24734 | MS.gene006962 | PPI |
| MS.gene24734 | MS.gene67483 | PPI |
| MS.gene24734 | MS.gene055162 | PPI |
| MS.gene24734 | MS.gene64804 | PPI |
| MS.gene24734 | MS.gene25097 | PPI |
| MS.gene24734 | MS.gene051172 | PPI |
| MS.gene24734 | MS.gene35136 | PPI |
| MS.gene24734 | MS.gene93333 | PPI |
| MS.gene24734 | MS.gene040757 | PPI |
| MS.gene24734 | MS.gene051245 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24734.t1 | MTR_7g104700 | 100.000 | 92 | 0 | 0 | 1 | 92 | 2 | 93 | 1.11e-64 | 190 |
| MS.gene24734.t1 | MTR_7g094500 | 98.913 | 92 | 1 | 0 | 1 | 92 | 2 | 93 | 4.23e-64 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24734.t1 | AT1G03330 | 93.478 | 92 | 6 | 0 | 1 | 92 | 2 | 93 | 8.27e-61 | 180 |
Find 25 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCATACTTCAAAGATT+TGG | 0.289749 | 7.1:-6874920 | MS.gene24734:CDS |
| AGTTCAATGTCCACGCCTTC+TGG | 0.312744 | 7.1:+6871527 | None:intergenic |
| CAAGCTTGATGTTGAGGTAT+TGG | 0.349777 | 7.1:+6874830 | None:intergenic |
| TGCCACAAGGAGAGAAGCCC+GGG | 0.397676 | 7.1:-6871495 | MS.gene24734:CDS |
| TTTGGTGGGAAGAGAAGTTA+CGG | 0.430070 | 7.1:-6874902 | MS.gene24734:CDS |
| CTCATACTTCAAAGATTTGG+TGG | 0.453220 | 7.1:-6874917 | MS.gene24734:CDS |
| TTTGATGTCAGCTTTCTGTA+AGG | 0.476052 | 7.1:-6871595 | MS.gene24734:intron |
| ATGCCACAAGGAGAGAAGCC+CGG | 0.530400 | 7.1:-6871496 | MS.gene24734:CDS |
| GCAATTGCCGCCAGAAGGCG+TGG | 0.554183 | 7.1:-6871537 | MS.gene24734:CDS |
| TCATACTTCAAAGATTTGGT+GGG | 0.556853 | 7.1:-6874916 | MS.gene24734:CDS |
| ACCCCGGGCTTCTCTCCTTG+TGG | 0.566921 | 7.1:+6871493 | None:intergenic |
| TACGTGCAATTGCCGCCAGA+AGG | 0.591585 | 7.1:-6871542 | MS.gene24734:CDS |
| AGAATGCAATGTGCCTCTGA+TGG | 0.594400 | 7.1:+6874858 | None:intergenic |
| CTGCTTCATCAGAGGATCAG+TGG | 0.596818 | 7.1:-6871570 | MS.gene24734:CDS |
| AACTATTGCACGATGCCACA+AGG | 0.598329 | 7.1:-6871508 | MS.gene24734:CDS |
| GAAAAGAAGATACCATGTGA+GGG | 0.601619 | 7.1:+6874776 | None:intergenic |
| ATAACAAAATCAACCACCCC+GGG | 0.612233 | 7.1:+6871478 | None:intergenic |
| GTAAGGAACTGCTTCATCAG+AGG | 0.623322 | 7.1:-6871578 | MS.gene24734:CDS |
| TCAATGTCCACGCCTTCTGG+CGG | 0.635143 | 7.1:+6871530 | None:intergenic |
| AGAAAAGAAGATACCATGTG+AGG | 0.650738 | 7.1:+6874775 | None:intergenic |
| AAGAACGATTTAGCCATCAG+AGG | 0.666365 | 7.1:-6874871 | MS.gene24734:CDS |
| AATAACAAAATCAACCACCC+CGG | 0.669310 | 7.1:+6871477 | None:intergenic |
| TCAAGACAAGTACCCTCACA+TGG | 0.691465 | 7.1:-6874788 | MS.gene24734:intron |
| ACAAGGAGAGAAGCCCGGGG+TGG | 0.693695 | 7.1:-6871491 | MS.gene24734:CDS |
| GCCACAAGGAGAGAAGCCCG+GGG | 0.723642 | 7.1:-6871494 | MS.gene24734:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTAAATTTGGATATT+TGG | - | chr7.1:6872562-6872581 | MS.gene24734:intron | 10.0% |
| !! | AGATATTCAAAATTTAAATT+TGG | - | chr7.1:6872554-6872573 | MS.gene24734:intron | 10.0% |
| !! | ATAAAAAAAAAAATCCTAAT+AGG | - | chr7.1:6871954-6871973 | MS.gene24734:intron | 10.0% |
| !! | TAAAAAAAAAAATCCTAATA+GGG | - | chr7.1:6871955-6871974 | MS.gene24734:intron | 10.0% |
| !!! | ATCTTCTTTTTTTTTTTTTA+AGG | + | chr7.1:6873915-6873934 | None:intergenic | 10.0% |
| !!! | ATTTTCTGTTTAAAAATTTA+GGG | - | chr7.1:6872929-6872948 | MS.gene24734:intron | 10.0% |
| !!! | TTAAATCTAATTTTGTTTTA+GGG | - | chr7.1:6872650-6872669 | MS.gene24734:intron | 10.0% |
| !! | AAAAAAAAAAATCCTAATAG+GGG | - | chr7.1:6871956-6871975 | MS.gene24734:intron | 15.0% |
| !! | AGGTAAAATATCATAATTAA+AGG | - | chr7.1:6873698-6873717 | MS.gene24734:intron | 15.0% |
| !! | TAATTATAGCAATAATAGTA+GGG | - | chr7.1:6873478-6873497 | MS.gene24734:intron | 15.0% |
| !!! | ATTTGATTCTATTTTTGTTA+TGG | - | chr7.1:6874772-6874791 | MS.gene24734:intron | 15.0% |
| !!! | CTTAAATCTAATTTTGTTTT+AGG | - | chr7.1:6872649-6872668 | MS.gene24734:intron | 15.0% |
| !!! | GATTTTCTGTTTAAAAATTT+AGG | - | chr7.1:6872928-6872947 | MS.gene24734:intron | 15.0% |
| !!! | TTTTCTGTTTAAAAATTTAG+GGG | - | chr7.1:6872930-6872949 | MS.gene24734:intron | 15.0% |
| !!! | TTTTTAGCTTTATGAAAAAA+TGG | + | chr7.1:6872967-6872986 | None:intergenic | 15.0% |
| !! | AAATTAATGCACAAAAGTAA+AGG | + | chr7.1:6872461-6872480 | None:intergenic | 20.0% |
| !! | AATTATAGCAATAATAGTAG+GGG | - | chr7.1:6873479-6873498 | MS.gene24734:intron | 20.0% |
| !! | ACTTCAATAGAAATCAATAA+TGG | + | chr7.1:6872392-6872411 | None:intergenic | 20.0% |
| !! | ATAAGATAAAAACCACAATT+TGG | + | chr7.1:6873663-6873682 | None:intergenic | 20.0% |
| !! | ATTGTTACATAGAAAAGATT+GGG | + | chr7.1:6874292-6874311 | None:intergenic | 20.0% |
| !! | CTCAAAATTTAAACATGAAA+TGG | - | chr7.1:6872179-6872198 | MS.gene24734:intron | 20.0% |
| !! | GCTTGTTTATATTCAATTAA+TGG | - | chr7.1:6874372-6874391 | MS.gene24734:intron | 20.0% |
| !! | GTAATTATAGCAATAATAGT+AGG | - | chr7.1:6873477-6873496 | MS.gene24734:intron | 20.0% |
| !! | TACATATAGATAAAGAGTAA+AGG | - | chr7.1:6874504-6874523 | MS.gene24734:intron | 20.0% |
| !! | TATCATAGAATAGATAAACA+AGG | - | chr7.1:6874548-6874567 | MS.gene24734:intron | 20.0% |
| !!! | ATCAACAATGCTTTAAATAA+TGG | + | chr7.1:6872289-6872308 | None:intergenic | 20.0% |
| !!! | TATTGTTTTTGTAGGAATTT+TGG | - | chr7.1:6873029-6873048 | MS.gene24734:intron | 20.0% |
| !!! | TCATGTTTAAATTTTGAGTT+TGG | + | chr7.1:6872177-6872196 | None:intergenic | 20.0% |
| !!! | TGTCTTAAAAGTTTTATTCA+AGG | - | chr7.1:6873396-6873415 | MS.gene24734:intron | 20.0% |
| !!! | TTGAAATTGAGAAGTATATT+AGG | - | chr7.1:6873619-6873638 | MS.gene24734:intron | 20.0% |
| !!! | TTTGGAATTATTGTTTTTGT+AGG | - | chr7.1:6873021-6873040 | MS.gene24734:intron | 20.0% |
| ! | AACCAATAAATAAGCACATA+AGG | + | chr7.1:6872791-6872810 | None:intergenic | 25.0% |
| ! | AACTATTGGATTAAGAAAGA+TGG | - | chr7.1:6872258-6872277 | MS.gene24734:intron | 25.0% |
| ! | AATATAAACAAGCTCAAACA+AGG | + | chr7.1:6874365-6874384 | None:intergenic | 25.0% |
| ! | ACCATAAGACTTAAAAATTG+TGG | + | chr7.1:6874418-6874437 | None:intergenic | 25.0% |
| ! | ACTATGATAGAATATCATTG+AGG | - | chr7.1:6872102-6872121 | MS.gene24734:intron | 25.0% |
| ! | ACTATTGGATTAAGAAAGAT+GGG | - | chr7.1:6872259-6872278 | MS.gene24734:intron | 25.0% |
| ! | ATGAACACTAAATCATTGTT+GGG | - | chr7.1:6871827-6871846 | MS.gene24734:intron | 25.0% |
| ! | CATAAGACTTAAAAATTGTG+GGG | + | chr7.1:6874416-6874435 | None:intergenic | 25.0% |
| ! | CCATAAGACTTAAAAATTGT+GGG | + | chr7.1:6874417-6874436 | None:intergenic | 25.0% |
| ! | GATTGTTACATAGAAAAGAT+TGG | + | chr7.1:6874293-6874312 | None:intergenic | 25.0% |
| ! | GTTCATCTGTTAATATGAAA+TGG | - | chr7.1:6873291-6873310 | MS.gene24734:intron | 25.0% |
| ! | TATCCTAATTGTTCATGAAT+CGG | - | chr7.1:6873553-6873572 | MS.gene24734:intron | 25.0% |
| ! | TCCTTATCTTTAATCTATGT+GGG | + | chr7.1:6871871-6871890 | None:intergenic | 25.0% |
| ! | TCTCTATAGCTCAATAAAAT+AGG | - | chr7.1:6872608-6872627 | MS.gene24734:intron | 25.0% |
| ! | TTTAAACAGAGTTGGATAAT+TGG | - | chr7.1:6873445-6873464 | MS.gene24734:intron | 25.0% |
| ! | TTTACAAGGATATTTGCAAA+AGG | - | chr7.1:6874574-6874593 | MS.gene24734:intron | 25.0% |
| !! | AAAATCTGCATTAGGTTTTT+GGG | - | chr7.1:6873206-6873225 | MS.gene24734:intron | 25.0% |
| !! | ACAGATCAAAATAGCATTTT+CGG | + | chr7.1:6872320-6872339 | None:intergenic | 25.0% |
| !! | CTTAATTTGATTAACCTAAC+TGG | - | chr7.1:6874743-6874762 | MS.gene24734:intron | 25.0% |
| !! | GATAAACAAGGAATTTTACA+AGG | - | chr7.1:6874560-6874579 | MS.gene24734:intron | 25.0% |
| !! | GTTGATATATCTCCTTTTAA+TGG | + | chr7.1:6874467-6874486 | None:intergenic | 25.0% |
| !! | TAAAATCTGCATTAGGTTTT+TGG | - | chr7.1:6873205-6873224 | MS.gene24734:intron | 25.0% |
| !! | TCTTGTTTAAAATCTGCATT+AGG | - | chr7.1:6873198-6873217 | MS.gene24734:intron | 25.0% |
| !! | TTGTGGTTTTTATCTTATGT+AGG | - | chr7.1:6873665-6873684 | MS.gene24734:intron | 25.0% |
| !!! | CTTAAAAGTTTTATTCAAGG+AGG | - | chr7.1:6873399-6873418 | MS.gene24734:intron | 25.0% |
| !!! | GAAGTTTTTGCTATTGTTAA+AGG | - | chr7.1:6872407-6872426 | MS.gene24734:intron | 25.0% |
| !!! | TATATTAGGATTTTGGAGTA+AGG | - | chr7.1:6873633-6873652 | MS.gene24734:intron | 25.0% |
| !!! | TATTTTGGAATGCCATTAAA+AGG | - | chr7.1:6874452-6874471 | MS.gene24734:intron | 25.0% |
| !!! | TGAAACTGTATGTTATTTTC+TGG | - | chr7.1:6874699-6874718 | MS.gene24734:intron | 25.0% |
| !!! | TGAGAAGTATATTAGGATTT+TGG | - | chr7.1:6873626-6873645 | MS.gene24734:intron | 25.0% |
| AACAATAATTCCAAACAGCA+TGG | + | chr7.1:6873016-6873035 | None:intergenic | 30.0% | |
| AATTAATGGCTGTGTTTGAA+TGG | - | chr7.1:6874386-6874405 | MS.gene24734:intron | 30.0% | |
| ACAATTAGGATAACAGAACT+AGG | + | chr7.1:6873545-6873564 | None:intergenic | 30.0% | |
| ACATAATCTGATTCATGTGA+AGG | + | chr7.1:6873060-6873079 | None:intergenic | 30.0% | |
| ATAAACTCATAAGTGAGGTT+GGG | - | chr7.1:6872056-6872075 | MS.gene24734:intron | 30.0% | |
| ATAAATACACTGCACTATCA+AGG | + | chr7.1:6872016-6872035 | None:intergenic | 30.0% | |
| ATCAAAACAAAATTTCCTGG+TGG | + | chr7.1:6872765-6872784 | None:intergenic | 30.0% | |
| ATCCTAATTGTTCATGAATC+GGG | - | chr7.1:6873554-6873573 | MS.gene24734:intron | 30.0% | |
| ATGTGATAAACTCATAAGTG+AGG | - | chr7.1:6872051-6872070 | MS.gene24734:intron | 30.0% | |
| CACATCAAAACAAAATTTCC+TGG | + | chr7.1:6872768-6872787 | None:intergenic | 30.0% | |
| CATATTCTGCGAATAACTAT+TGG | - | chr7.1:6872244-6872263 | MS.gene24734:intron | 30.0% | |
| CATGAACACTAAATCATTGT+TGG | - | chr7.1:6871826-6871845 | MS.gene24734:intron | 30.0% | |
| CTTATGTAGGATCATAATGA+AGG | - | chr7.1:6873678-6873697 | MS.gene24734:intron | 30.0% | |
| CTTCTCATACTTCAAAGATT+TGG | - | chr7.1:6871492-6871511 | MS.gene24734:CDS | 30.0% | |
| GTCCTTATCTTTAATCTATG+TGG | + | chr7.1:6871872-6871891 | None:intergenic | 30.0% | |
| TAAAAGTCATTACCAGTGTT+AGG | + | chr7.1:6873104-6873123 | None:intergenic | 30.0% | |
| TAGGAAAGATGAACATTAGT+AGG | + | chr7.1:6873526-6873545 | None:intergenic | 30.0% | |
| TATCCAACTCTGTTTAAATG+TGG | + | chr7.1:6873443-6873462 | None:intergenic | 30.0% | |
| TATGTAACAATCCTCTATGT+GGG | - | chr7.1:6874301-6874320 | MS.gene24734:intron | 30.0% | |
| TCCAAAATAACCTATAGTTC+AGG | + | chr7.1:6874441-6874460 | None:intergenic | 30.0% | |
| TCCCACATAGATTAAAGATA+AGG | - | chr7.1:6871867-6871886 | MS.gene24734:intron | 30.0% | |
| TGACTAGAGTTTATAAAGAG+AGG | - | chr7.1:6871892-6871911 | MS.gene24734:intron | 30.0% | |
| TGCACTATCAAGGTAAAATA+GGG | + | chr7.1:6872006-6872025 | None:intergenic | 30.0% | |
| TGCCTTATGTGCTTATTTAT+TGG | - | chr7.1:6872786-6872805 | MS.gene24734:intron | 30.0% | |
| TTAACTCATCCTTACAAAAC+TGG | + | chr7.1:6871927-6871946 | None:intergenic | 30.0% | |
| ! | AAATCTGCATTAGGTTTTTG+GGG | - | chr7.1:6873207-6873226 | MS.gene24734:intron | 30.0% |
| ! | AATCAAATCTGAAACCAGTT+AGG | + | chr7.1:6874760-6874779 | None:intergenic | 30.0% |
| ! | GTTAAGATTCCTTGTTTACT+CGG | + | chr7.1:6874340-6874359 | None:intergenic | 30.0% |
| ! | TATCTTCTTTTCTCTCTCTA+GGG | - | chr7.1:6871647-6871666 | MS.gene24734:intron | 30.0% |
| ! | TCATACTTCAAAGATTTGGT+GGG | - | chr7.1:6871496-6871515 | MS.gene24734:CDS | 30.0% |
| ! | TCCTGAACTATAGGTTATTT+TGG | - | chr7.1:6874437-6874456 | MS.gene24734:intron | 30.0% |
| !! | TATTTTCAAGCTTGATGTTG+AGG | + | chr7.1:6871591-6871610 | None:intergenic | 30.0% |
| !!! | CCCACAATTTTTAAGTCTTA+TGG | - | chr7.1:6874414-6874433 | MS.gene24734:intron | 30.0% |
| AAAGGGAAATCATGCATCAA+TGG | + | chr7.1:6872496-6872515 | None:intergenic | 35.0% | |
| AAGGTTTGCAGAAATTACCT+TGG | - | chr7.1:6874593-6874612 | MS.gene24734:intron | 35.0% | |
| AAGTAGAACTATGTCTCTCA+TGG | - | chr7.1:6872988-6873007 | MS.gene24734:intron | 35.0% | |
| ACCAGGAACAAATTGTTAGA+AGG | + | chr7.1:6871769-6871788 | None:intergenic | 35.0% | |
| AGAAAAGAAGATACCATGTG+AGG | + | chr7.1:6871640-6871659 | None:intergenic | 35.0% | |
| AGAGTAAAGGATAAACACCT+AGG | - | chr7.1:6874517-6874536 | MS.gene24734:intron | 35.0% | |
| ATCCTTACAAAACTGGTGAA+GGG | + | chr7.1:6871920-6871939 | None:intergenic | 35.0% | |
| CACTATCAAGGTAAAATAGG+GGG | + | chr7.1:6872004-6872023 | None:intergenic | 35.0% | |
| CATCCACATTTAAACAGAGT+TGG | - | chr7.1:6873437-6873456 | MS.gene24734:intron | 35.0% | |
| CTAAATCATTGTTGGGCTAT+TGG | - | chr7.1:6871834-6871853 | MS.gene24734:intron | 35.0% | |
| CTATGTAACAATCCTCTATG+TGG | - | chr7.1:6874300-6874319 | MS.gene24734:intron | 35.0% | |
| CTCATACTTCAAAGATTTGG+TGG | - | chr7.1:6871495-6871514 | MS.gene24734:CDS | 35.0% | |
| CTGCACTATCAAGGTAAAAT+AGG | + | chr7.1:6872007-6872026 | None:intergenic | 35.0% | |
| CTTGATCGACATGCTATAAA+GGG | + | chr7.1:6872513-6872532 | None:intergenic | 35.0% | |
| CTTGGTTATGTTGTGAATTG+AGG | - | chr7.1:6872840-6872859 | MS.gene24734:intron | 35.0% | |
| GAAAAGAAGATACCATGTGA+GGG | + | chr7.1:6871639-6871658 | None:intergenic | 35.0% | |
| GAGTTGGATAATTGGTAAGT+CGG | - | chr7.1:6873453-6873472 | MS.gene24734:intron | 35.0% | |
| GATAAACTCATAAGTGAGGT+TGG | - | chr7.1:6872055-6872074 | MS.gene24734:intron | 35.0% | |
| GCACTATCAAGGTAAAATAG+GGG | + | chr7.1:6872005-6872024 | None:intergenic | 35.0% | |
| GTTAATGTTGCTGTAGATCT+TGG | - | chr7.1:6872822-6872841 | MS.gene24734:intron | 35.0% | |
| GTTACATAGAAAAGATTGGG+TGG | + | chr7.1:6874289-6874308 | None:intergenic | 35.0% | |
| TAAACTCATAAGTGAGGTTG+GGG | - | chr7.1:6872057-6872076 | MS.gene24734:intron | 35.0% | |
| TAACGAAAGCAATTTGTCAG+CGG | + | chr7.1:6873349-6873368 | None:intergenic | 35.0% | |
| TCTTTAATCTATGTGGGACT+TGG | + | chr7.1:6871865-6871884 | None:intergenic | 35.0% | |
| TGAAGAAAGAAAAACTGCAG+AGG | - | chr7.1:6872895-6872914 | MS.gene24734:intron | 35.0% | |
| TGAGAAGGAATGTGTTTGAA+AGG | - | chr7.1:6873951-6873970 | MS.gene24734:intron | 35.0% | |
| TGTTTATGCACTTAGGAGTT+AGG | - | chr7.1:6872691-6872710 | MS.gene24734:intron | 35.0% | |
| TTAGGAGTTAGGAATACAAG+AGG | - | chr7.1:6872702-6872721 | MS.gene24734:intron | 35.0% | |
| TTTCAAACACATTCCTTCTC+AGG | + | chr7.1:6873952-6873971 | None:intergenic | 35.0% | |
| TTTCACTTTATGCGTGCATA+AGG | + | chr7.1:6874684-6874703 | None:intergenic | 35.0% | |
| TTTGATGTCAGCTTTCTGTA+AGG | - | chr7.1:6874817-6874836 | MS.gene24734:CDS | 35.0% | |
| ! | AGGTTTCTCGTTTTCATGTT+TGG | - | chr7.1:6873238-6873257 | MS.gene24734:intron | 35.0% |
| ! | GTATCTTCTTTTCTCTCTCT+AGG | - | chr7.1:6871646-6871665 | MS.gene24734:intron | 35.0% |
| ! | TCTAACAATTTGTTCCTGGT+TGG | - | chr7.1:6871769-6871788 | MS.gene24734:intron | 35.0% |
| ! | TTTAGCTTATGATCTGCGAT+AGG | - | chr7.1:6873130-6873149 | MS.gene24734:intron | 35.0% |
| !! | TAGGGTTGTTTGTTGTTTGA+GGG | - | chr7.1:6872668-6872687 | MS.gene24734:intron | 35.0% |
| !! | TTAGGGTTGTTTGTTGTTTG+AGG | - | chr7.1:6872667-6872686 | MS.gene24734:intron | 35.0% |
| !!! | GAGATCGTTATAGTTTTGTG+AGG | + | chr7.1:6874238-6874257 | None:intergenic | 35.0% |
| AAAAACCTAGCTCAAAGCGT+CGG | - | chr7.1:6872146-6872165 | MS.gene24734:intron | 40.0% | |
| AAAAACTGCAGAGGAAGGAA+AGG | - | chr7.1:6872904-6872923 | MS.gene24734:intron | 40.0% | |
| AAAACTGCAGAGGAAGGAAA+GGG | - | chr7.1:6872905-6872924 | MS.gene24734:intron | 40.0% | |
| AAGAACGATTTAGCCATCAG+AGG | - | chr7.1:6871541-6871560 | MS.gene24734:CDS | 40.0% | |
| AGAGAGGAGAGAAAGACAAT+GGG | - | chr7.1:6874073-6874092 | MS.gene24734:intron | 40.0% | |
| AGAGTAAGAGAGGTTTAGAG+AGG | - | chr7.1:6874057-6874076 | MS.gene24734:intron | 40.0% | |
| AGATTGAGTATGTAACCACC+AGG | - | chr7.1:6872747-6872766 | MS.gene24734:intron | 40.0% | |
| AGGAATGTGTTTGAAAGGTC+TGG | - | chr7.1:6873956-6873975 | MS.gene24734:intron | 40.0% | |
| AGTTAGGAATACAAGAGGCT+CGG | - | chr7.1:6872707-6872726 | MS.gene24734:intron | 40.0% | |
| CAAGCTTGATGTTGAGGTAT+TGG | + | chr7.1:6871585-6871604 | None:intergenic | 40.0% | |
| CAGTGTTAGGAGTTGAAGAA+TGG | + | chr7.1:6873091-6873110 | None:intergenic | 40.0% | |
| CATCCTTACAAAACTGGTGA+AGG | + | chr7.1:6871921-6871940 | None:intergenic | 40.0% | |
| CATTCTTCAACTCCTAACAC+TGG | - | chr7.1:6873089-6873108 | MS.gene24734:intron | 40.0% | |
| CCACATATGCACAATAAGCA+AGG | - | chr7.1:6872363-6872382 | MS.gene24734:intron | 40.0% | |
| CCTTGCTTATTGTGCATATG+TGG | + | chr7.1:6872366-6872385 | None:intergenic | 40.0% | |
| CTCCCGATTCATGAACAATT+AGG | + | chr7.1:6873559-6873578 | None:intergenic | 40.0% | |
| GAAAGAAAAACTGCAGAGGA+AGG | - | chr7.1:6872899-6872918 | MS.gene24734:intron | 40.0% | |
| GAGTAAGGCTTTCCAAATTG+TGG | - | chr7.1:6873648-6873667 | MS.gene24734:intron | 40.0% | |
| GCAACTATACTATACCAACC+AGG | + | chr7.1:6871786-6871805 | None:intergenic | 40.0% | |
| GCTTGATCGACATGCTATAA+AGG | + | chr7.1:6872514-6872533 | None:intergenic | 40.0% | |
| GTCTTATGGTCCTGAACTAT+AGG | - | chr7.1:6874428-6874447 | MS.gene24734:intron | 40.0% | |
| GTTCAAATAAGAGCCTGAGA+AGG | - | chr7.1:6873936-6873955 | MS.gene24734:intron | 40.0% | |
| TAGAGAGGAGAGAAAGACAA+TGG | - | chr7.1:6874072-6874091 | MS.gene24734:intron | 40.0% | |
| TAGATGAGACAGAGTAAGAG+AGG | - | chr7.1:6874047-6874066 | MS.gene24734:intron | 40.0% | |
| TCTATGATAGCAGCATACCT+AGG | + | chr7.1:6874537-6874556 | None:intergenic | 40.0% | |
| TGAATCGGGAGACATTGAAA+CGG | - | chr7.1:6873568-6873587 | MS.gene24734:intron | 40.0% | |
| TGCCATGTGTTTCAATTCGA+AGG | - | chr7.1:6871803-6871822 | MS.gene24734:intron | 40.0% | |
| TGCCTTCGAATTGAAACACA+TGG | + | chr7.1:6871808-6871827 | None:intergenic | 40.0% | |
| TTTGGTGGGAAGAGAAGTTA+CGG | - | chr7.1:6871510-6871529 | MS.gene24734:CDS | 40.0% | |
| ! | AAGATTCCTTGTTTACTCGG+AGG | + | chr7.1:6874337-6874356 | None:intergenic | 40.0% |
| ! | AGATTCCTTGTTTACTCGGA+GGG | + | chr7.1:6874336-6874355 | None:intergenic | 40.0% |
| ! | GCCTTCTAACAATTTGTTCC+TGG | - | chr7.1:6871765-6871784 | MS.gene24734:intron | 40.0% |
| ! | GTGATAATGACACAAAGCCA+GGG | + | chr7.1:6874185-6874204 | None:intergenic | 40.0% |
| ! | TGTGATAATGACACAAAGCC+AGG | + | chr7.1:6874186-6874205 | None:intergenic | 40.0% |
| !! | TTGAGGGTGTTTATGCACTT+AGG | - | chr7.1:6872684-6872703 | MS.gene24734:intron | 40.0% |
| !!! | AGGTTTTTGGGGTCAACATT+AGG | - | chr7.1:6873218-6873237 | MS.gene24734:intron | 40.0% |
| AAACTGCAGAGGAAGGAAAG+GGG | - | chr7.1:6872906-6872925 | MS.gene24734:intron | 45.0% | |
| AACTATTGCACGATGCCACA+AGG | - | chr7.1:6874904-6874923 | MS.gene24734:CDS | 45.0% | |
| AAGATTGGGTGGAATCTCCA+TGG | + | chr7.1:6874278-6874297 | None:intergenic | 45.0% | |
| AGAATGCAATGTGCCTCTGA+TGG | + | chr7.1:6871557-6871576 | None:intergenic | 45.0% | |
| AGACATGGATAGAGGTTCGA+CGG | - | chr7.1:6874101-6874120 | MS.gene24734:intron | 45.0% | |
| AGATGAAGCAATGTTGTCCC+TGG | - | chr7.1:6874165-6874184 | MS.gene24734:intron | 45.0% | |
| AGGAGAGAAAGACAATGGGT+TGG | - | chr7.1:6874077-6874096 | MS.gene24734:intron | 45.0% | |
| GAACATTAGTAGGCTCACTC+AGG | + | chr7.1:6873516-6873535 | None:intergenic | 45.0% | |
| GAATCTCCATGGAGACTTGT+AGG | + | chr7.1:6874267-6874286 | None:intergenic | 45.0% | |
| GTAAGGAACTGCTTCATCAG+AGG | - | chr7.1:6874834-6874853 | MS.gene24734:CDS | 45.0% | |
| GTAGCTGCATTACCCCTATT+AGG | + | chr7.1:6871971-6871990 | None:intergenic | 45.0% | |
| TCAAGACAAGTACCCTCACA+TGG | - | chr7.1:6871624-6871643 | MS.gene24734:intron | 45.0% | |
| TCTCATGGTACCATGCTGTT+TGG | - | chr7.1:6873003-6873022 | MS.gene24734:intron | 45.0% | |
| TCTGTTTCCATGTGAGCAAG+AGG | - | chr7.1:6873155-6873174 | MS.gene24734:intron | 45.0% | |
| TTCAGCTCTCTCAAACTCCA+AGG | + | chr7.1:6874613-6874632 | None:intergenic | 45.0% | |
| TTTCCATGTGAGCAAGAGGA+GGG | - | chr7.1:6873159-6873178 | MS.gene24734:intron | 45.0% | |
| ! | GGAGAGAAAGACAATGGGTT+GGG | - | chr7.1:6874078-6874097 | MS.gene24734:intron | 45.0% |
| !! | AGTTTTGTGAGGCAAGTGAC+AGG | + | chr7.1:6874227-6874246 | None:intergenic | 45.0% |
| !! | CACCCTTCACCAGTTTTGTA+AGG | - | chr7.1:6871915-6871934 | MS.gene24734:intron | 45.0% |
| !! | ATTTATTTATTTATAGTTAT+TGG | - | chr7.1:6873814-6873833 | MS.gene24734:intron | 5.0% |
| !!! | AATTTTGTTTATATAATTAA+AGG | + | chr7.1:6873781-6873800 | None:intergenic | 5.0% |
| ACGGACAGAGATAGGCATAG+AGG | - | chr7.1:6874120-6874139 | MS.gene24734:intron | 50.0% | |
| AGTTCAATGTCCACGCCTTC+TGG | + | chr7.1:6874888-6874907 | None:intergenic | 50.0% | |
| CTGCTTCATCAGAGGATCAG+TGG | - | chr7.1:6874842-6874861 | MS.gene24734:CDS | 50.0% | |
| GCGTGCATAAGGTAATGCGA+GGG | + | chr7.1:6874673-6874692 | None:intergenic | 50.0% | |
| GCTGTTCCTACAAGTCTCCA+TGG | - | chr7.1:6874258-6874277 | MS.gene24734:intron | 50.0% | |
| GTTTCCATGTGAGCAAGAGG+AGG | - | chr7.1:6873158-6873177 | MS.gene24734:intron | 50.0% | |
| TGCGTGCATAAGGTAATGCG+AGG | + | chr7.1:6874674-6874693 | None:intergenic | 50.0% | |
| TTCCATGTGAGCAAGAGGAG+GGG | - | chr7.1:6873160-6873179 | MS.gene24734:intron | 50.0% | |
| !! | AGACAATGGGTTGGGAGACA+TGG | - | chr7.1:6874086-6874105 | MS.gene24734:intron | 50.0% |
| ATGCCACAAGGAGAGAAGCC+CGG | - | chr7.1:6874916-6874935 | MS.gene24734:CDS | 55.0% | |
| CACGACCCTCCGAGTAAACA+AGG | - | chr7.1:6874328-6874347 | MS.gene24734:intron | 55.0% | |
| GAGGTTCGACGGACAGAGAT+AGG | - | chr7.1:6874112-6874131 | MS.gene24734:intron | 55.0% | |
| GGGTTGGGAGACATGGATAG+AGG | - | chr7.1:6874093-6874112 | MS.gene24734:intron | 55.0% | |
| GGTCGTGCAATCCCACATAG+AGG | + | chr7.1:6874315-6874334 | None:intergenic | 55.0% | |
| TACGTGCAATTGCCGCCAGA+AGG | - | chr7.1:6874870-6874889 | MS.gene24734:CDS | 55.0% | |
| TCAATGTCCACGCCTTCTGG+CGG | + | chr7.1:6874885-6874904 | None:intergenic | 55.0% | |
| ! | CTGAACCGACGCTTTGAGCT+AGG | + | chr7.1:6872154-6872173 | None:intergenic | 55.0% |
| GACCCCTCCTCTTGCTCACA+TGG | + | chr7.1:6873165-6873184 | None:intergenic | 60.0% | |
| GTGAGCAAGAGGAGGGGTCA+GGG | - | chr7.1:6873166-6873185 | MS.gene24734:intron | 60.0% | |
| TGAGCAAGAGGAGGGGTCAG+GGG | - | chr7.1:6873167-6873186 | MS.gene24734:intron | 60.0% | |
| TGCCACAAGGAGAGAAGCCC+GGG | - | chr7.1:6874917-6874936 | MS.gene24734:CDS | 60.0% | |
| TGTGAGCAAGAGGAGGGGTC+AGG | - | chr7.1:6873165-6873184 | MS.gene24734:intron | 60.0% | |
| ACAAGGAGAGAAGCCCGGGG+TGG | - | chr7.1:6874921-6874940 | MS.gene24734:CDS | 65.0% | |
| ACCCCGGGCTTCTCTCCTTG+TGG | + | chr7.1:6874922-6874941 | None:intergenic | 65.0% | |
| GCAATTGCCGCCAGAAGGCG+TGG | - | chr7.1:6874875-6874894 | MS.gene24734:CDS | 65.0% | |
| GCCACAAGGAGAGAAGCCCG+GGG | - | chr7.1:6874918-6874937 | MS.gene24734:CDS | 65.0% | |
| ! | AGAGGAGGGGTCAGGGGTGC+AGG | - | chr7.1:6873173-6873192 | MS.gene24734:intron | 70.0% |
| ! | GAGGAGGGGTCAGGGGTGCA+GGG | - | chr7.1:6873174-6873193 | MS.gene24734:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 6871487 | 6874947 | 6871487 | ID=MS.gene24734 |
| chr7.1 | mRNA | 6871487 | 6874947 | 6871487 | ID=MS.gene24734.t1;Parent=MS.gene24734 |
| chr7.1 | exon | 6874789 | 6874947 | 6874789 | ID=MS.gene24734.t1.exon1;Parent=MS.gene24734.t1 |
| chr7.1 | CDS | 6874789 | 6874947 | 6874789 | ID=cds.MS.gene24734.t1;Parent=MS.gene24734.t1 |
| chr7.1 | exon | 6871487 | 6871606 | 6871487 | ID=MS.gene24734.t1.exon2;Parent=MS.gene24734.t1 |
| chr7.1 | CDS | 6871487 | 6871606 | 6871487 | ID=cds.MS.gene24734.t1;Parent=MS.gene24734.t1 |
| Gene Sequence |
| Protein sequence |
