Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24897.t1 | XP_013454734.1 | 97.9 | 900 | 19 | 0 | 73 | 972 | 1 | 900 | 0.00E+00 | 1696 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24897.t1 | Q8VZM1 | 76.4 | 878 | 203 | 4 | 73 | 949 | 1 | 875 | 0.0e+00 | 1274.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24897.t1 | A0A072USB6 | 97.9 | 900 | 19 | 0 | 73 | 972 | 1 | 900 | 0.0e+00 | 1696.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene24897 | 0.837818 | 4.15E-57 | -1.69E-46 |
| MS.gene049159 | MS.gene24897 | 0.806736 | 7.12E-50 | -1.69E-46 |
| MS.gene049190 | MS.gene24897 | 0.814817 | 1.27E-51 | -1.69E-46 |
| MS.gene049207 | MS.gene24897 | 0.801879 | 7.31E-49 | -1.69E-46 |
| MS.gene049343 | MS.gene24897 | 0.803541 | 3.32E-49 | -1.69E-46 |
| MS.gene049666 | MS.gene24897 | 0.804519 | 2.08E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene24897 | 0.80725 | 5.54E-50 | -1.69E-46 |
| MS.gene049824 | MS.gene24897 | 0.821762 | 3.40E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene24897 | 0.824359 | 8.43E-54 | -1.69E-46 |
| MS.gene050561 | MS.gene24897 | 0.802604 | 5.18E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene24897 | 0.804763 | 1.85E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene24897 | 0.804743 | 1.87E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene24897 | 0.809995 | 1.44E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene24897 | 0.800725 | 1.26E-48 | -1.69E-46 |
| MS.gene051720 | MS.gene24897 | 0.816708 | 4.81E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene24897 | 0.85562 | 5.58E-62 | -1.69E-46 |
| MS.gene052020 | MS.gene24897 | 0.80105 | 1.08E-48 | -1.69E-46 |
| MS.gene052582 | MS.gene24897 | 0.810564 | 1.08E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene24897 | 0.825057 | 5.77E-54 | -1.69E-46 |
| MS.gene052609 | MS.gene24897 | 0.830922 | 2.24E-55 | -1.69E-46 |
| MS.gene052669 | MS.gene24897 | 0.805904 | 1.07E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene24897 | 0.812481 | 4.15E-51 | -1.69E-46 |
| MS.gene052775 | MS.gene24897 | 0.828714 | 7.71E-55 | -1.69E-46 |
| MS.gene052776 | MS.gene24897 | 0.800949 | 1.13E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene24897 | 0.823711 | 1.20E-53 | -1.69E-46 |
| MS.gene053122 | MS.gene24897 | 0.838288 | 3.14E-57 | -1.69E-46 |
| MS.gene053226 | MS.gene24897 | 0.886228 | 4.10E-72 | -1.69E-46 |
| MS.gene053541 | MS.gene24897 | 0.80972 | 1.65E-50 | -1.69E-46 |
| MS.gene053542 | MS.gene24897 | 0.820908 | 5.35E-53 | -1.69E-46 |
| MS.gene05364 | MS.gene24897 | 0.804369 | 2.23E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene24897 | 0.820876 | 5.44E-53 | -1.69E-46 |
| MS.gene054584 | MS.gene24897 | 0.806527 | 7.88E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene24897 | 0.83776 | 4.30E-57 | -1.69E-46 |
| MS.gene055512 | MS.gene24897 | 0.807512 | 4.87E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene24897 | 0.813053 | 3.11E-51 | -1.69E-46 |
| MS.gene055694 | MS.gene24897 | 0.820695 | 5.99E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene24897 | 0.873232 | 1.72E-67 | -1.69E-46 |
| MS.gene056173 | MS.gene24897 | 0.834728 | 2.53E-56 | -1.69E-46 |
| MS.gene056308 | MS.gene24897 | 0.833687 | 4.62E-56 | -1.69E-46 |
| MS.gene056366 | MS.gene24897 | 0.82547 | 4.61E-54 | -1.69E-46 |
| MS.gene056507 | MS.gene24897 | 0.843206 | 1.62E-58 | -1.69E-46 |
| MS.gene056553 | MS.gene24897 | 0.807292 | 5.43E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene24897 | 0.828624 | 8.10E-55 | -1.69E-46 |
| MS.gene057444 | MS.gene24897 | 0.800247 | 1.58E-48 | -1.69E-46 |
| MS.gene057598 | MS.gene24897 | 0.826299 | 2.93E-54 | -1.69E-46 |
| MS.gene057855 | MS.gene24897 | 0.81969 | 1.02E-52 | -1.69E-46 |
| MS.gene057869 | MS.gene24897 | 0.815568 | 8.65E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene24897 | 0.836184 | 1.09E-56 | -1.69E-46 |
| MS.gene058010 | MS.gene24897 | 0.806806 | 6.88E-50 | -1.69E-46 |
| MS.gene05847 | MS.gene24897 | 0.808696 | 2.73E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene24897 | 0.815047 | 1.13E-51 | -1.69E-46 |
| MS.gene058829 | MS.gene24897 | 0.813764 | 2.17E-51 | -1.69E-46 |
| MS.gene058919 | MS.gene24897 | 0.804983 | 1.66E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene24897 | 0.810734 | 9.95E-51 | -1.69E-46 |
| MS.gene059570 | MS.gene24897 | 0.807554 | 4.78E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene24897 | 0.804912 | 1.72E-49 | -1.69E-46 |
| MS.gene059725 | MS.gene24897 | 0.80176 | 7.73E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene24897 | 0.839069 | 1.98E-57 | -1.69E-46 |
| MS.gene060355 | MS.gene24897 | 0.860101 | 2.61E-63 | -1.69E-46 |
| MS.gene060587 | MS.gene24897 | 0.802903 | 4.50E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene24897 | 0.811759 | 5.96E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene24897 | 0.812569 | 3.97E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene24897 | 0.807488 | 4.93E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24897.t1 | MTR_4g011890 | 98.111 | 900 | 17 | 0 | 73 | 972 | 1 | 900 | 0.0 | 1828 |
| MS.gene24897.t1 | MTR_2g102435 | 81.167 | 908 | 162 | 2 | 73 | 971 | 1 | 908 | 0.0 | 1450 |
| MS.gene24897.t1 | MTR_2g102435 | 82.759 | 841 | 138 | 1 | 73 | 906 | 1 | 841 | 0.0 | 1367 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24897.t1 | AT1G80410 | 74.197 | 903 | 223 | 6 | 73 | 972 | 1 | 896 | 0.0 | 1329 |
| MS.gene24897.t1 | AT1G80410 | 75.682 | 880 | 210 | 4 | 73 | 951 | 1 | 877 | 0.0 | 1326 |
Find 192 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCGGAAATCTTGTACATTT+TGG | 0.148812 | 4.1:+84021533 | MS.gene24897:CDS |
| CCATGAACCCTGATAATTAT+AGG | 0.179496 | 4.1:+84013629 | MS.gene24897:CDS |
| AGTTTCTCGCTTTCAGTTAC+AGG | 0.198845 | 4.1:-84021201 | None:intergenic |
| TCTTCTTTGTACAATCATTC+TGG | 0.211391 | 4.1:+84016663 | MS.gene24897:CDS |
| ATTTATTACCTATAATTATC+AGG | 0.212894 | 4.1:-84013637 | None:intergenic |
| TGAAACAAAGCAATATAAAA+AGG | 0.223930 | 4.1:+84007936 | MS.gene24897:CDS |
| ATCCAAGGCTGTGGAAATTT+TGG | 0.230234 | 4.1:+84012446 | MS.gene24897:CDS |
| CCCTCAAAGTAAGTTGAATA+AGG | 0.241878 | 4.1:-84023675 | None:intergenic |
| CTTTGTCTAGGCAGACATTT+TGG | 0.256838 | 4.1:+84016840 | MS.gene24897:intron |
| ATTGCAGTTCACAAGCTTCT+TGG | 0.266120 | 4.1:+84023274 | MS.gene24897:CDS |
| AATACAATCCAACACACTTT+TGG | 0.274805 | 4.1:-84014250 | None:intergenic |
| CTTCCTCTGTTGTAGACTTC+GGG | 0.282116 | 4.1:-84019392 | None:intergenic |
| TGCACAGATCTCTTTGTTAG+AGG | 0.284524 | 4.1:+84013371 | MS.gene24897:intron |
| AAGCCGAGCGCTCAACTATT+AGG | 0.286213 | 4.1:+84021241 | MS.gene24897:CDS |
| TGCTCCAACCGTTCACTATC+TGG | 0.286513 | 4.1:-84012504 | None:intergenic |
| CCTATAATTATCAGGGTTCA+TGG | 0.300614 | 4.1:-84013629 | None:intergenic |
| TGCAGATGAAGCAAGGCTTA+TGG | 0.303369 | 4.1:+84018362 | MS.gene24897:CDS |
| TTGAAGAGATTGGCCTCTTT+AGG | 0.305988 | 4.1:-84006896 | None:intergenic |
| CTTTGCTATCAAGGTGGATT+TGG | 0.311554 | 4.1:+84018546 | MS.gene24897:intron |
| GCGTGACTTATCACTCTTAC+AGG | 0.312505 | 4.1:+84009058 | MS.gene24897:CDS |
| TCTAGTGTGGCATCGAAGTC+TGG | 0.323999 | 4.1:+84019615 | MS.gene24897:CDS |
| AACAATAAGCTTGAAGAGAT+TGG | 0.334194 | 4.1:-84006906 | None:intergenic |
| ACCAAGCAACGATGAGAATC+AGG | 0.337600 | 4.1:-84020768 | None:intergenic |
| GCGCATGCTGCAGGCTGATC+AGG | 0.339377 | 4.1:+84018422 | MS.gene24897:CDS |
| AAGCAGCAGAAAATTATATT+AGG | 0.353155 | 4.1:+84016518 | MS.gene24897:CDS |
| CGAACAAGTTCATATGCTTC+AGG | 0.357741 | 4.1:-84008629 | None:intergenic |
| TCAGGATCAACAGGCTTTAC+AGG | 0.361983 | 4.1:-84019645 | None:intergenic |
| GATCGTTATGTGATGGCCTT+TGG | 0.366031 | 4.1:-83997441 | None:intergenic |
| AAGCAGCAGCAGGAGCTATA+AGG | 0.369614 | 4.1:+84018938 | MS.gene24897:CDS |
| CCCTTATTCAACTTACTTTG+AGG | 0.370290 | 4.1:+84023674 | MS.gene24897:CDS |
| GAAGAATTCACCCGATTCAT+TGG | 0.371821 | 4.1:+84020487 | MS.gene24897:CDS |
| TATTGATCTATATTCTTTCA+AGG | 0.373909 | 4.1:+84017375 | MS.gene24897:CDS |
| ACCTTAAAAGTCATGTTTGC+TGG | 0.375515 | 4.1:+84008934 | MS.gene24897:CDS |
| ATTCTCTGTCTGACCGATAA+AGG | 0.377191 | 4.1:-84008971 | None:intergenic |
| TGTAGAAACTTTATCAATGA+AGG | 0.378683 | 4.1:+84008577 | MS.gene24897:intron |
| TAGAAAGAGAAGTCTCATAT+TGG | 0.381306 | 4.1:-84017318 | None:intergenic |
| GGATTTCTTGAGAGAGCTCT+TGG | 0.382910 | 4.1:+84013399 | MS.gene24897:CDS |
| TGCTGCTGCTTTATGAAAAT+AGG | 0.383335 | 4.1:-84018926 | None:intergenic |
| GCTCAAATGAGAGATTTATC+TGG | 0.384702 | 4.1:+84011536 | MS.gene24897:CDS |
| GCTTTCCATGACAATCATAA+AGG | 0.386503 | 4.1:+84021395 | MS.gene24897:CDS |
| TTGTCATAGTCATTACCATT+AGG | 0.391088 | 4.1:+84002967 | MS.gene24897:intron |
| GATCTATTCTCAGTGCATTT+CGG | 0.393326 | 4.1:-84009016 | None:intergenic |
| ATCCAGTTCATGCGATGGTT+TGG | 0.398255 | 4.1:-84011596 | None:intergenic |
| ACTTGGGGAGAAGTTATTAC+AGG | 0.405789 | 4.1:+84019671 | MS.gene24897:CDS |
| AGCCAAACCATCGCATGAAC+TGG | 0.411550 | 4.1:+84011594 | MS.gene24897:CDS |
| TGATTATCAACTGAATGGTT+AGG | 0.412636 | 4.1:-84023765 | None:intergenic |
| TCTTCCTCTGTTGTAGACTT+CGG | 0.415096 | 4.1:-84019393 | None:intergenic |
| AACTGACTAAAGGCCGAGTT+GGG | 0.418480 | 4.1:-84023717 | None:intergenic |
| AACTTCTCCCCAAGTGGATC+AGG | 0.418869 | 4.1:-84019663 | None:intergenic |
| TCGTCTAGAAATGGAGCAAT+TGG | 0.419041 | 4.1:+84023220 | MS.gene24897:intron |
| CAAATGTGTTTCCAATGAAT+CGG | 0.422505 | 4.1:-84020498 | None:intergenic |
| CCCTGATTCTCATCGTTGCT+TGG | 0.426967 | 4.1:+84020767 | MS.gene24897:CDS |
| CCAAGTGGATCAGGATCAAC+AGG | 0.427504 | 4.1:-84019654 | None:intergenic |
| TGCTGTATTGTTCACAAAAG+AGG | 0.429445 | 4.1:+84018579 | MS.gene24897:CDS |
| CCGCCAGGGCAATCTTGGGC+GGG | 0.430054 | 4.1:+84018759 | MS.gene24897:CDS |
| CTTCTTTGTACAATCATTCT+GGG | 0.430078 | 4.1:+84016664 | MS.gene24897:CDS |
| AGTATGAATGAAAATCAAAT+TGG | 0.433591 | 4.1:-84018834 | None:intergenic |
| CCTCAAAGTAAGTTGAATAA+GGG | 0.433741 | 4.1:-84023674 | None:intergenic |
| CTTCAAGTATTTAACAGCTT+CGG | 0.435564 | 4.1:-84020456 | None:intergenic |
| CTGAAAGCGAGAAACTGATA+TGG | 0.441420 | 4.1:+84021208 | MS.gene24897:CDS |
| AAATGTATACCTCCATGATC+TGG | 0.441908 | 4.1:-84007994 | None:intergenic |
| TGCTCATGGAACCCAATTGA+TGG | 0.444158 | 4.1:-84021176 | None:intergenic |
| CCTTATTCAACTTACTTTGA+GGG | 0.450035 | 4.1:+84023675 | MS.gene24897:CDS |
| TTGTGTTCTTTAGCAATATG+TGG | 0.452213 | 4.1:-84003038 | None:intergenic |
| TATTAGGCCTCTCTTAACTA+AGG | 0.452306 | 4.1:+84016534 | MS.gene24897:CDS |
| TTCCAAAATTTCCACAGCCT+TGG | 0.452318 | 4.1:-84012448 | None:intergenic |
| AATGGAGCAATTGGACCAAT+CGG | 0.452826 | 4.1:+84023229 | MS.gene24897:CDS |
| AACTCTGATGACAATCCTAA+TGG | 0.457728 | 4.1:-84002982 | None:intergenic |
| TTATGTGATGGCCTTTGGTT+TGG | 0.461676 | 4.1:-83997436 | None:intergenic |
| CTGCATTTGCAGATGAAGCA+AGG | 0.463262 | 4.1:+84018355 | MS.gene24897:CDS |
| AATAGGCATGTGAGTGCAAT+TGG | 0.469602 | 4.1:-84018909 | None:intergenic |
| GTTCTTTCGTAACTGACTAA+AGG | 0.470549 | 4.1:-84023727 | None:intergenic |
| ATGGAGCAATTGGACCAATC+GGG | 0.471704 | 4.1:+84023230 | MS.gene24897:CDS |
| GGGTTTAACATTAAATTGCA+TGG | 0.472520 | 4.1:+84008598 | MS.gene24897:CDS |
| TCAAGTTTCCATTCCCCGAT+TGG | 0.475845 | 4.1:-84023244 | None:intergenic |
| TCCGCCAGGGCAATCTTGGG+CGG | 0.475971 | 4.1:+84018758 | MS.gene24897:CDS |
| GTGAGATCCTTCCTTACTCA+TGG | 0.478371 | 4.1:-83997414 | None:intergenic |
| ATCGGTCAGACAGAGAATAC+AGG | 0.479744 | 4.1:+84008976 | MS.gene24897:CDS |
| CACATTCACTATTAACATAA+CGG | 0.486325 | 4.1:-84018395 | None:intergenic |
| TAAGTGGTCTTCTGCAGTAA+AGG | 0.488305 | 4.1:+84014346 | MS.gene24897:CDS |
| GTGGTGGTGGTCGCCACTCT+AGG | 0.488307 | 4.1:-84003019 | None:intergenic |
| GTTGGATTGTATTTAGAAGA+TGG | 0.489708 | 4.1:+84014260 | MS.gene24897:CDS |
| TTCAGTTACAGGAGTGCTCA+TGG | 0.491608 | 4.1:-84021190 | None:intergenic |
| ACTTGCTTCTACCATGAGTA+AGG | 0.492420 | 4.1:+83997403 | None:intergenic |
| AAAGTCCACAAAAGAGTTGA+AGG | 0.492499 | 4.1:-84017191 | None:intergenic |
| AACCATCGCATGAACTGGAT+TGG | 0.493792 | 4.1:+84011599 | MS.gene24897:CDS |
| TGTTTGCCAGAGAATACCCC+TGG | 0.493889 | 4.1:+84016468 | MS.gene24897:intron |
| GCAACATCAGCAACAACAAT+GGG | 0.494095 | 4.1:+84006860 | MS.gene24897:intron |
| AAGAAGCAGAAACGTTATAC+AGG | 0.494572 | 4.1:+84013596 | MS.gene24897:CDS |
| GCAAGGTATGAGCTGGCCTC+AGG | 0.497598 | 4.1:+84018724 | MS.gene24897:intron |
| GCTGTATTGTTCACAAAAGA+GGG | 0.499907 | 4.1:+84018580 | MS.gene24897:CDS |
| GAACCTAATAGTTGAGCGCT+CGG | 0.502984 | 4.1:-84021244 | None:intergenic |
| GTTTCACTTGTAGTGAAGCT+TGG | 0.503623 | 4.1:+84013565 | MS.gene24897:CDS |
| GATAACCTTTATGATTGTCA+TGG | 0.505429 | 4.1:-84021400 | None:intergenic |
| CCTGTTGATCCTGATCCACT+TGG | 0.507893 | 4.1:+84019654 | MS.gene24897:CDS |
| TTCAGTTGATAATCAAAATG+TGG | 0.511760 | 4.1:+84023773 | MS.gene24897:CDS |
| CATACTTAGAGTTTAAATGA+TGG | 0.512812 | 4.1:-84011634 | None:intergenic |
| ATAGTGAACGGTTGGAGCAT+GGG | 0.513342 | 4.1:+84012508 | MS.gene24897:CDS |
| ACATTAAAGTGGTTTGAAGA+AGG | 0.514107 | 4.1:+83997476 | MS.gene24897:CDS |
| GATAGTGAACGGTTGGAGCA+TGG | 0.514201 | 4.1:+84012507 | MS.gene24897:CDS |
| ATGTGTTAAGCGCATGCTGC+AGG | 0.516507 | 4.1:+84018413 | MS.gene24897:CDS |
| GTTTCGTTGTATGAAACACT+TGG | 0.516607 | 4.1:+84014314 | MS.gene24897:CDS |
| TCCTCCAGATAGTGAACGGT+TGG | 0.517561 | 4.1:+84012500 | MS.gene24897:CDS |
| AAATGTGTTTCCAATGAATC+GGG | 0.519249 | 4.1:-84020497 | None:intergenic |
| ACTTACTCAATGCCGCATCT+TGG | 0.521571 | 4.1:-84023312 | None:intergenic |
| ATACTTAGAGTTTAAATGAT+GGG | 0.522923 | 4.1:-84011633 | None:intergenic |
| TTGGATTGTATTTAGAAGAT+GGG | 0.522961 | 4.1:+84014261 | MS.gene24897:CDS |
| AGAAGGTGGACAAATTAACT+TGG | 0.523355 | 4.1:+83997493 | MS.gene24897:CDS |
| TTTATTACCTATAATTATCA+GGG | 0.529331 | 4.1:-84013636 | None:intergenic |
| TAACTGACTAAAGGCCGAGT+TGG | 0.529519 | 4.1:-84023718 | None:intergenic |
| TGCTTCACTGCCTCCTAAAG+AGG | 0.530422 | 4.1:+84006883 | MS.gene24897:CDS |
| CTGTTGATCCTGATCCACTT+GGG | 0.530625 | 4.1:+84019655 | MS.gene24897:CDS |
| TGTAAAGCAGTTACTGAGGT+TGG | 0.532998 | 4.1:+84020734 | MS.gene24897:CDS |
| ATCTCTTTGTTAGAGGAATG+TGG | 0.534201 | 4.1:+84013378 | MS.gene24897:CDS |
| GTGGGCTCTACCACATCGAA+TGG | 0.535193 | 4.1:+84023792 | MS.gene24897:CDS |
| AAGACGTCAAGCCAATATCC+TGG | 0.535938 | 4.1:+84016895 | MS.gene24897:CDS |
| TATTTAACAGCTTCGGACAA+TGG | 0.540220 | 4.1:-84020449 | None:intergenic |
| GTAGAAACTTTATCAATGAA+GGG | 0.546677 | 4.1:+84008578 | MS.gene24897:intron |
| TGAATACCGCGGTCCTAGAG+TGG | 0.550208 | 4.1:+84003006 | MS.gene24897:CDS |
| CAGCTCTGCCTCTCCCAACT+CGG | 0.550523 | 4.1:+84023704 | MS.gene24897:CDS |
| CTAGTGTGGCATCGAAGTCT+GGG | 0.550990 | 4.1:+84019616 | MS.gene24897:CDS |
| TTTGTACAATCATTCTGGGA+AGG | 0.551029 | 4.1:+84016668 | MS.gene24897:CDS |
| TTACCAATCAGTTACTATGA+AGG | 0.552154 | 4.1:+84014224 | MS.gene24897:intron |
| CCCGCCCAAGATTGCCCTGG+CGG | 0.556745 | 4.1:-84018759 | None:intergenic |
| CAATTGGACCAATCGGGGAA+TGG | 0.557393 | 4.1:+84023236 | MS.gene24897:CDS |
| GAAGGTCTCCAAAAGTGTGT+TGG | 0.559719 | 4.1:+84014242 | MS.gene24897:CDS |
| GAATATAGATCAATAACAGC+AGG | 0.560700 | 4.1:-84017367 | None:intergenic |
| TGGGCTCTACCACATCGAAT+GGG | 0.560936 | 4.1:+84023793 | MS.gene24897:CDS |
| ACTTGTTCGTCAAGGATTGA+AGG | 0.563496 | 4.1:+84008643 | MS.gene24897:CDS |
| TTGTATACCTTAGTTAAGAG+AGG | 0.566996 | 4.1:-84016541 | None:intergenic |
| AACCAATCCAGTTCATGCGA+TGG | 0.567359 | 4.1:-84011601 | None:intergenic |
| TTGTGAAGGAAACATTAAAG+TGG | 0.568690 | 4.1:+83997465 | MS.gene24897:CDS |
| TTAAAGTGGTTTGAAGAAGG+TGG | 0.569571 | 4.1:+83997479 | MS.gene24897:CDS |
| TTCCTCTGTTGTAGACTTCG+GGG | 0.572186 | 4.1:-84019391 | None:intergenic |
| TGTAATAACTTCTCCCCAAG+TGG | 0.572730 | 4.1:-84019669 | None:intergenic |
| AAGAGATTGGCCTCTTTAGG+AGG | 0.575397 | 4.1:-84006893 | None:intergenic |
| GAAAGATCCGAAAACAGAGA+TGG | 0.575498 | 4.1:-84016642 | None:intergenic |
| TGTACTTGCAAGGTATGAGC+TGG | 0.575773 | 4.1:+84018717 | MS.gene24897:intron |
| TCAGTTGATAATCAAAATGT+GGG | 0.576091 | 4.1:+84023774 | MS.gene24897:CDS |
| ATTGCGACAAAAGCAAAGAA+AGG | 0.577955 | 4.1:+84019455 | MS.gene24897:CDS |
| GCTTCTACCATGAGTAAGGA+AGG | 0.579198 | 4.1:+83997407 | None:intergenic |
| GCATATGAACTTGTTCGTCA+AGG | 0.579316 | 4.1:+84008635 | MS.gene24897:CDS |
| ACTTTAATGTTTCCTTCACA+AGG | 0.583186 | 4.1:-83997463 | None:intergenic |
| GGATTCTAATAGAAAGTCTG+AGG | 0.584814 | 4.1:+84021554 | MS.gene24897:CDS |
| ACTAAAGGCCGAGTTGGGAG+AGG | 0.587034 | 4.1:-84023712 | None:intergenic |
| GAGCCCGCCCAAGATTGCCC+TGG | 0.587641 | 4.1:-84018762 | None:intergenic |
| TAGTGAACGGTTGGAGCATG+GGG | 0.588647 | 4.1:+84012509 | MS.gene24897:CDS |
| ATTCAACTTACTTTGAGGGA+AGG | 0.590106 | 4.1:+84023679 | MS.gene24897:CDS |
| AGACGTCAAGCCAATATCCT+GGG | 0.590848 | 4.1:+84016896 | MS.gene24897:CDS |
| CACTTGGGCAGCAATATAAG+TGG | 0.595646 | 4.1:+84014330 | MS.gene24897:CDS |
| TGCTAAAGAACACAAGAACA+AGG | 0.599958 | 4.1:+84003046 | MS.gene24897:CDS |
| AAGTCCACAAAAGAGTTGAA+GGG | 0.600837 | 4.1:-84017190 | None:intergenic |
| TGCAACATCAGCAACAACAA+TGG | 0.600944 | 4.1:+84006859 | MS.gene24897:intron |
| ACATGCATTGCATATCATGA+AGG | 0.601554 | 4.1:-84018618 | None:intergenic |
| TCTTTAGCAATATGTGGTGG+TGG | 0.601967 | 4.1:-84003032 | None:intergenic |
| TAACAGTGCATCCAAGGCTG+TGG | 0.602812 | 4.1:+84012437 | MS.gene24897:intron |
| TCACAAGGATCGTTATGTGA+TGG | 0.604339 | 4.1:-83997448 | None:intergenic |
| TCCTCTGTTGTAGACTTCGG+GGG | 0.608275 | 4.1:-84019390 | None:intergenic |
| ATCATCCTCCAGATAGTGAA+CGG | 0.611227 | 4.1:+84012496 | MS.gene24897:CDS |
| CGAAGAGTTAAATTCTAGTG+TGG | 0.611472 | 4.1:+84019602 | MS.gene24897:CDS |
| TTTCGTTGTATGAAACACTT+GGG | 0.614312 | 4.1:+84014315 | MS.gene24897:CDS |
| TGGAGCAATTGGACCAATCG+GGG | 0.617287 | 4.1:+84023231 | MS.gene24897:CDS |
| AGTCCACAAAAGAGTTGAAG+GGG | 0.617982 | 4.1:-84017189 | None:intergenic |
| CCAAGCAACGATGAGAATCA+GGG | 0.620040 | 4.1:-84020767 | None:intergenic |
| TGTTGATCCTGATCCACTTG+GGG | 0.622870 | 4.1:+84019656 | MS.gene24897:CDS |
| TCACATAACGATCCTTGTGA+AGG | 0.628319 | 4.1:+83997451 | MS.gene24897:CDS |
| AGTCGGTTACTGAAGCATGC+GGG | 0.630243 | 4.1:+84018315 | MS.gene24897:CDS |
| AATGTGTAACAGTGCATCCA+AGG | 0.631402 | 4.1:+84012431 | MS.gene24897:intron |
| TGTTCTTTAGCAATATGTGG+TGG | 0.639560 | 4.1:-84003035 | None:intergenic |
| TCATGAATGTATTTATGAGA+TGG | 0.640350 | 4.1:-84023835 | None:intergenic |
| GAAGGATCTCACCAAACCAA+AGG | 0.642105 | 4.1:+83997425 | MS.gene24897:CDS |
| CTGGCCTCTACGTACCTGAA+AGG | 0.644814 | 4.1:-84020564 | None:intergenic |
| GAGTCGGTTACTGAAGCATG+CGG | 0.647183 | 4.1:+84018314 | MS.gene24897:intron |
| GAATGTTCTCCCATTCGATG+TGG | 0.652509 | 4.1:-84023802 | None:intergenic |
| CAGTAAATAATATTGTGCCA+AGG | 0.653453 | 4.1:+84021598 | MS.gene24897:CDS |
| CTGTATTGTTCACAAAAGAG+GGG | 0.659001 | 4.1:+84018581 | MS.gene24897:CDS |
| TCGGTCAGACAGAGAATACA+GGG | 0.659217 | 4.1:+84008977 | MS.gene24897:CDS |
| TGTATTGTTCACAAAAGAGG+GGG | 0.659746 | 4.1:+84018582 | MS.gene24897:CDS |
| TCCAACCGTTCACTATCTGG+AGG | 0.661507 | 4.1:-84012501 | None:intergenic |
| GCTAAAGAACACAAGAACAA+GGG | 0.662862 | 4.1:+84003047 | MS.gene24897:CDS |
| TGGTCGCCACTCTAGGACCG+CGG | 0.665767 | 4.1:-84003012 | None:intergenic |
| AAATAGCATCAGCCGCCTTG+AGG | 0.671327 | 4.1:-84007960 | None:intergenic |
| TTCTCTTTCTAAAATCGACG+AGG | 0.687102 | 4.1:+84017330 | MS.gene24897:CDS |
| AGGCTGTAAAGCAGTTACTG+AGG | 0.698287 | 4.1:+84020730 | MS.gene24897:intron |
| GCATTATGCTGATATTACTG+AGG | 0.708511 | 4.1:+84018810 | MS.gene24897:CDS |
| GTGCAGCATTATGACAGACG+TGG | 0.713334 | 4.1:+84017295 | MS.gene24897:intron |
| AGTACTTGTTGACCAAGATG+CGG | 0.715178 | 4.1:+84023300 | MS.gene24897:CDS |
| CGTCAAGCCAATATCCTGGG+AGG | 0.718713 | 4.1:+84016899 | MS.gene24897:CDS |
| TTCATGATATGCAATGCATG+TGG | 0.734917 | 4.1:+84018620 | MS.gene24897:CDS |
| CATCAGAGTTATGAATACCG+CGG | 0.747773 | 4.1:+84002995 | MS.gene24897:CDS |
| AGCAACGATGAGAATCAGGG+TGG | 0.778782 | 4.1:-84020764 | None:intergenic |
| GTCAGACAGAGAATACAGGG+AGG | 0.800412 | 4.1:+84008980 | MS.gene24897:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 83997416 | 84023845 | 83997416 | ID=MS.gene24897 |
| chr4.1 | mRNA | 83997416 | 84023845 | 83997416 | ID=MS.gene24897.t1;Parent=MS.gene24897 |
| chr4.1 | exon | 83997416 | 83997530 | 83997416 | ID=MS.gene24897.t1.exon1;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 83997416 | 83997530 | 83997416 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84002976 | 84003068 | 84002976 | ID=MS.gene24897.t1.exon2;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84002976 | 84003068 | 84002976 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84006870 | 84006928 | 84006870 | ID=MS.gene24897.t1.exon3;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84006870 | 84006928 | 84006870 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84007928 | 84008006 | 84007928 | ID=MS.gene24897.t1.exon4;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84007928 | 84008006 | 84007928 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84008582 | 84008664 | 84008582 | ID=MS.gene24897.t1.exon5;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84008582 | 84008664 | 84008582 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84008930 | 84009079 | 84008930 | ID=MS.gene24897.t1.exon6;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84008930 | 84009079 | 84008930 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84011536 | 84011651 | 84011536 | ID=MS.gene24897.t1.exon7;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84011536 | 84011651 | 84011536 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84012443 | 84012548 | 84012443 | ID=MS.gene24897.t1.exon8;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84012443 | 84012548 | 84012443 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84013378 | 84013449 | 84013378 | ID=MS.gene24897.t1.exon9;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84013378 | 84013449 | 84013378 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84013535 | 84013650 | 84013535 | ID=MS.gene24897.t1.exon10;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84013535 | 84013650 | 84013535 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84014235 | 84014367 | 84014235 | ID=MS.gene24897.t1.exon11;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84014235 | 84014367 | 84014235 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84016478 | 84016555 | 84016478 | ID=MS.gene24897.t1.exon12;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84016478 | 84016555 | 84016478 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84016636 | 84016689 | 84016636 | ID=MS.gene24897.t1.exon13;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84016636 | 84016689 | 84016636 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84016850 | 84016920 | 84016850 | ID=MS.gene24897.t1.exon14;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84016850 | 84016920 | 84016850 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84017175 | 84017229 | 84017175 | ID=MS.gene24897.t1.exon15;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84017175 | 84017229 | 84017175 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84017301 | 84017396 | 84017301 | ID=MS.gene24897.t1.exon16;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84017301 | 84017396 | 84017301 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84018315 | 84018443 | 84018315 | ID=MS.gene24897.t1.exon17;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84018315 | 84018443 | 84018315 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84018559 | 84018641 | 84018559 | ID=MS.gene24897.t1.exon18;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84018559 | 84018641 | 84018559 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84018729 | 84018959 | 84018729 | ID=MS.gene24897.t1.exon19;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84018729 | 84018959 | 84018729 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84019365 | 84019497 | 84019365 | ID=MS.gene24897.t1.exon20;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84019365 | 84019497 | 84019365 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84019585 | 84019692 | 84019585 | ID=MS.gene24897.t1.exon21;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84019585 | 84019692 | 84019585 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84020440 | 84020571 | 84020440 | ID=MS.gene24897.t1.exon22;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84020440 | 84020571 | 84020440 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84020732 | 84020788 | 84020732 | ID=MS.gene24897.t1.exon23;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84020732 | 84020788 | 84020732 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84021165 | 84021262 | 84021165 | ID=MS.gene24897.t1.exon24;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84021165 | 84021262 | 84021165 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84021358 | 84021416 | 84021358 | ID=MS.gene24897.t1.exon25;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84021358 | 84021416 | 84021358 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84021508 | 84021619 | 84021508 | ID=MS.gene24897.t1.exon26;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84021508 | 84021619 | 84021508 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84023228 | 84023328 | 84023228 | ID=MS.gene24897.t1.exon27;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84023228 | 84023328 | 84023228 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| chr4.1 | exon | 84023646 | 84023845 | 84023646 | ID=MS.gene24897.t1.exon28;Parent=MS.gene24897.t1 |
| chr4.1 | CDS | 84023646 | 84023845 | 84023646 | ID=cds.MS.gene24897.t1;Parent=MS.gene24897.t1 |
| Gene Sequence |
| Protein sequence |
