Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25109.t1 | XP_003627322.1 | 99.2 | 614 | 3 | 1 | 1 | 612 | 1 | 614 | 3.20E-247 | 864.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25109.t1 | Q8L7S4 | 74.6 | 639 | 130 | 11 | 1 | 612 | 1 | 634 | 9.4e-171 | 601.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25109.t1 | G7L7L2 | 99.2 | 614 | 3 | 1 | 1 | 612 | 1 | 614 | 2.3e-247 | 864.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene25109 | 0.854724 | 1.02E-61 | -1.69E-46 |
| MS.gene049807 | MS.gene25109 | 0.806803 | 6.89E-50 | -1.69E-46 |
| MS.gene049887 | MS.gene25109 | 0.858319 | 8.94E-63 | -1.69E-46 |
| MS.gene050084 | MS.gene25109 | 0.8069 | 6.57E-50 | -1.69E-46 |
| MS.gene050085 | MS.gene25109 | 0.82823 | 1.01E-54 | -1.69E-46 |
| MS.gene050551 | MS.gene25109 | 0.846068 | 2.74E-59 | -1.69E-46 |
| MS.gene050689 | MS.gene25109 | 0.833499 | 5.15E-56 | -1.69E-46 |
| MS.gene050807 | MS.gene25109 | 0.808875 | 2.50E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene25109 | 0.837714 | 4.42E-57 | -1.69E-46 |
| MS.gene051102 | MS.gene25109 | 0.911585 | 5.15E-83 | -1.69E-46 |
| MS.gene051343 | MS.gene25109 | 0.817215 | 3.70E-52 | -1.69E-46 |
| MS.gene051381 | MS.gene25109 | 0.834487 | 2.91E-56 | -1.69E-46 |
| MS.gene05157 | MS.gene25109 | 0.810516 | 1.11E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene25109 | 0.800457 | 1.43E-48 | -1.69E-46 |
| MS.gene052307 | MS.gene25109 | 0.850031 | 2.21E-60 | -1.69E-46 |
| MS.gene052335 | MS.gene25109 | 0.803528 | 3.34E-49 | -1.69E-46 |
| MS.gene052397 | MS.gene25109 | 0.838007 | 3.71E-57 | -1.69E-46 |
| MS.gene052514 | MS.gene25109 | 0.804338 | 2.27E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene25109 | 0.831555 | 1.56E-55 | -1.69E-46 |
| MS.gene052609 | MS.gene25109 | 0.872553 | 2.91E-67 | -1.69E-46 |
| MS.gene052665 | MS.gene25109 | 0.851531 | 8.35E-61 | -1.69E-46 |
| MS.gene052732 | MS.gene25109 | 0.836504 | 9.00E-57 | -1.69E-46 |
| MS.gene052776 | MS.gene25109 | 0.801445 | 8.97E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene25109 | 0.834558 | 2.80E-56 | -1.69E-46 |
| MS.gene053143 | MS.gene25109 | 0.839622 | 1.42E-57 | -1.69E-46 |
| MS.gene053144 | MS.gene25109 | 0.842636 | 2.29E-58 | -1.69E-46 |
| MS.gene053174 | MS.gene25109 | 0.803879 | 2.82E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene25109 | 0.804819 | 1.80E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene25109 | 0.803467 | 3.44E-49 | -1.69E-46 |
| MS.gene054558 | MS.gene25109 | 0.805836 | 1.10E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene25109 | 0.842388 | 2.67E-58 | -1.69E-46 |
| MS.gene05462 | MS.gene25109 | 0.823197 | 1.58E-53 | -1.69E-46 |
| MS.gene054823 | MS.gene25109 | 0.81291 | 3.34E-51 | -1.69E-46 |
| MS.gene054824 | MS.gene25109 | 0.84304 | 1.79E-58 | -1.69E-46 |
| MS.gene055144 | MS.gene25109 | 0.800116 | 1.68E-48 | -1.69E-46 |
| MS.gene055311 | MS.gene25109 | 0.826001 | 3.45E-54 | -1.69E-46 |
| MS.gene055313 | MS.gene25109 | 0.823156 | 1.61E-53 | -1.69E-46 |
| MS.gene055314 | MS.gene25109 | 0.813394 | 2.62E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene25109 | 0.828225 | 1.01E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene25109 | 0.8187 | 1.71E-52 | -1.69E-46 |
| MS.gene055469 | MS.gene25109 | 0.877632 | 5.38E-69 | -1.69E-46 |
| MS.gene055513 | MS.gene25109 | 0.835341 | 1.78E-56 | -1.69E-46 |
| MS.gene055891 | MS.gene25109 | 0.803414 | 3.53E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene25109 | -0.804583 | 2.02E-49 | -1.69E-46 |
| MS.gene056097 | MS.gene25109 | 0.803692 | 3.09E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene25109 | 0.855117 | 7.82E-62 | -1.69E-46 |
| MS.gene056308 | MS.gene25109 | 0.845526 | 3.84E-59 | -1.69E-46 |
| MS.gene056390 | MS.gene25109 | 0.809905 | 1.50E-50 | -1.69E-46 |
| MS.gene056432 | MS.gene25109 | 0.821666 | 3.58E-53 | -1.69E-46 |
| MS.gene056507 | MS.gene25109 | 0.867923 | 9.56E-66 | -1.69E-46 |
| MS.gene056553 | MS.gene25109 | 0.801757 | 7.75E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene25109 | 0.803256 | 3.80E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene25109 | 0.803325 | 3.68E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene25109 | 0.81952 | 1.11E-52 | -1.69E-46 |
| MS.gene057446 | MS.gene25109 | 0.814981 | 1.17E-51 | -1.69E-46 |
| MS.gene058292 | MS.gene25109 | 0.801633 | 8.21E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene25109 | 0.846511 | 2.07E-59 | -1.69E-46 |
| MS.gene058639 | MS.gene25109 | 0.851369 | 9.28E-61 | -1.69E-46 |
| MS.gene058646 | MS.gene25109 | 0.805697 | 1.18E-49 | -1.69E-46 |
| MS.gene058647 | MS.gene25109 | 0.800502 | 1.40E-48 | -1.69E-46 |
| MS.gene058758 | MS.gene25109 | 0.80905 | 2.29E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene25109 | 0.837972 | 3.79E-57 | -1.69E-46 |
| MS.gene059007 | MS.gene25109 | 0.800053 | 1.73E-48 | -1.69E-46 |
| MS.gene059171 | MS.gene25109 | 0.872205 | 3.80E-67 | -1.69E-46 |
| MS.gene059570 | MS.gene25109 | 0.803715 | 3.05E-49 | -1.69E-46 |
| MS.gene059713 | MS.gene25109 | 0.84903 | 4.20E-60 | -1.69E-46 |
| MS.gene059725 | MS.gene25109 | 0.830225 | 3.31E-55 | -1.69E-46 |
| MS.gene05978 | MS.gene25109 | 0.820272 | 7.49E-53 | -1.69E-46 |
| MS.gene059937 | MS.gene25109 | 0.800865 | 1.18E-48 | -1.69E-46 |
| MS.gene059965 | MS.gene25109 | 0.801313 | 9.55E-49 | -1.69E-46 |
| MS.gene060296 | MS.gene25109 | 0.812765 | 3.60E-51 | -1.69E-46 |
| MS.gene060563 | MS.gene25109 | 0.800473 | 1.42E-48 | -1.69E-46 |
| MS.gene060637 | MS.gene25109 | 0.850154 | 2.04E-60 | -1.69E-46 |
| MS.gene061006 | MS.gene25109 | 0.87714 | 7.98E-69 | -1.69E-46 |
| MS.gene061100 | MS.gene25109 | 0.807427 | 5.08E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25109.t1 | MTR_8g021120 | 99.349 | 614 | 2 | 1 | 1 | 612 | 1 | 614 | 0.0 | 1224 |
| MS.gene25109.t1 | MTR_1g032520 | 88.130 | 615 | 66 | 4 | 1 | 612 | 1 | 611 | 0.0 | 1026 |
| MS.gene25109.t1 | MTR_8g105350 | 83.495 | 618 | 94 | 5 | 1 | 612 | 1 | 616 | 0.0 | 1004 |
| MS.gene25109.t1 | MTR_2g026590 | 49.180 | 549 | 243 | 9 | 53 | 581 | 13 | 545 | 4.33e-150 | 444 |
| MS.gene25109.t1 | MTR_4g133890 | 49.720 | 535 | 242 | 10 | 52 | 567 | 17 | 543 | 1.22e-149 | 444 |
| MS.gene25109.t1 | MTR_4g133890 | 49.720 | 535 | 242 | 10 | 52 | 567 | 25 | 551 | 3.24e-149 | 443 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25109.t1 | AT1G24764 | 75.743 | 639 | 123 | 11 | 1 | 612 | 1 | 634 | 0.0 | 902 |
| MS.gene25109.t1 | AT1G24764 | 75.743 | 639 | 123 | 11 | 1 | 612 | 60 | 693 | 0.0 | 902 |
| MS.gene25109.t1 | AT1G68060 | 75.829 | 633 | 121 | 12 | 1 | 612 | 1 | 622 | 0.0 | 900 |
| MS.gene25109.t1 | AT1G14840 | 74.013 | 608 | 132 | 11 | 17 | 612 | 11 | 604 | 0.0 | 829 |
| MS.gene25109.t1 | AT2G01750 | 74.915 | 590 | 132 | 8 | 29 | 612 | 50 | 629 | 0.0 | 826 |
| MS.gene25109.t1 | AT2G01750 | 74.788 | 591 | 132 | 9 | 29 | 612 | 50 | 630 | 0.0 | 821 |
| MS.gene25109.t1 | AT1G14840 | 71.711 | 608 | 131 | 12 | 17 | 612 | 11 | 589 | 0.0 | 787 |
| MS.gene25109.t1 | AT1G24764 | 79.630 | 486 | 88 | 7 | 133 | 612 | 1 | 481 | 0.0 | 749 |
| MS.gene25109.t1 | AT4G17220 | 47.037 | 540 | 247 | 10 | 53 | 588 | 6 | 510 | 1.14e-135 | 406 |
Find 146 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTAGTGCCGCTTCTT+TGG | 0.223340 | 8.4:+72568752 | None:intergenic |
| AGAGAGAAACAGATGTTAAT+TGG | 0.235223 | 8.4:-72567506 | MS.gene25109:CDS |
| TCATCCATGGCGGATGTTTC+CGG | 0.236748 | 8.4:-72573482 | None:intergenic |
| TTCTCAAAACCAACCTCTAA+TGG | 0.241419 | 8.4:-72567717 | MS.gene25109:CDS |
| TTCTAGCTCCCTTACAGTTT+GGG | 0.252166 | 8.4:+72568476 | None:intergenic |
| TGATTCTGAGCACTGTTTAC+AGG | 0.265068 | 8.4:+72567071 | None:intergenic |
| AACATCTGTTTCTCTCTCTT+TGG | 0.269005 | 8.4:+72567512 | None:intergenic |
| CTTCTAGCTCCCTTACAGTT+TGG | 0.274253 | 8.4:+72568475 | None:intergenic |
| GCTCAGAATCAGCTAATTTC+TGG | 0.278957 | 8.4:-72567059 | MS.gene25109:CDS |
| AGAAGCAATTCTTGCTCCTT+TGG | 0.279703 | 8.4:-72568973 | MS.gene25109:CDS |
| CTAGAAGAGGCTGTCCTTGC+AGG | 0.291437 | 8.4:-72568459 | MS.gene25109:CDS |
| CCGGCGCCGCTTTCAGTTCC+CGG | 0.295615 | 8.4:-72573437 | MS.gene25109:CDS |
| GGAGCAAGAATTGCTTCTAT+TGG | 0.301222 | 8.4:+72568978 | None:intergenic |
| GGTTACCATCCTTTCAATTA+AGG | 0.302608 | 8.4:-72567680 | MS.gene25109:CDS |
| CTCCGCGAGGCAACCGAGTA+TGG | 0.302776 | 8.4:-72573378 | MS.gene25109:CDS |
| ATAATAAGCTTGATGTTATT+GGG | 0.314258 | 8.4:+72566257 | None:intergenic |
| GGATTTGGTAAGACGGTCTA+AGG | 0.317342 | 8.4:+72568773 | None:intergenic |
| CAGTGAAGGTTGAGCTTAAT+CGG | 0.325939 | 8.4:-72573316 | MS.gene25109:CDS |
| TAGTGCCGCTTCTTTGGATT+TGG | 0.336670 | 8.4:+72568758 | None:intergenic |
| GAGCAAGAATTGCTTCTATT+GGG | 0.338217 | 8.4:+72568979 | None:intergenic |
| CTTTGGTTTCTTCAAGAGAT+TGG | 0.352553 | 8.4:+72567529 | None:intergenic |
| AAAGCGGTTCAGCAATATAA+AGG | 0.353628 | 8.4:-72567102 | MS.gene25109:CDS |
| TGAAGAACGTCGATTCTTGC+AGG | 0.357777 | 8.4:-72568140 | MS.gene25109:intron |
| TCAGGAAGAAAATAAAATAT+TGG | 0.359694 | 8.4:-72568541 | MS.gene25109:intron |
| TGCCTCGACTTCCATGGCTT+TGG | 0.366369 | 8.4:+72567205 | None:intergenic |
| TCTCAAAACCAACCTCTAAT+GGG | 0.370707 | 8.4:-72567716 | MS.gene25109:CDS |
| TTGGTTAAACGAATAACTTT+GGG | 0.372655 | 8.4:+72567548 | None:intergenic |
| TGTTCAGGTTGCCTTGGTTA+AGG | 0.376565 | 8.4:-72568718 | MS.gene25109:CDS |
| ATTGGTTAAACGAATAACTT+TGG | 0.382076 | 8.4:+72567547 | None:intergenic |
| GATACAGAGGATAGTGTTCC+AGG | 0.384107 | 8.4:-72567441 | MS.gene25109:CDS |
| TCACGAAAAGCTCTTCTTCT+CGG | 0.387832 | 8.4:-72573409 | MS.gene25109:CDS |
| AAAAGATTTAGATGTTCCTT+TGG | 0.396460 | 8.4:+72567623 | None:intergenic |
| AAGTACTAGAGGAGAGTTTG+AGG | 0.414680 | 8.4:-72567827 | MS.gene25109:CDS |
| CATGAATCTGTTGCACGGTT+CGG | 0.424974 | 8.4:-72573342 | MS.gene25109:CDS |
| CACCGTAGCTACTCTATTTG+CGG | 0.426008 | 8.4:+72568219 | None:intergenic |
| TTCCGGCGACGGAGCTGAAA+TGG | 0.428527 | 8.4:-72573465 | MS.gene25109:CDS |
| TGAGCACTGTTTACAGGGCC+AGG | 0.429111 | 8.4:+72567077 | None:intergenic |
| CTTCTTTGCCTCGACTTCCA+TGG | 0.430509 | 8.4:+72567199 | None:intergenic |
| TGAAGCCGAAAAGACTGTTC+AGG | 0.438906 | 8.4:-72568733 | MS.gene25109:CDS |
| GAAAGGAAATTCAGATGATA+AGG | 0.438934 | 8.4:-72567484 | MS.gene25109:CDS |
| TTGCTTACACTTCTTCCCTC+AGG | 0.450125 | 8.4:+72567774 | None:intergenic |
| CGGAGCTGAAATGGCGACGC+CGG | 0.450733 | 8.4:-72573456 | MS.gene25109:CDS |
| CTGTCAGATGTTAGCAAAGA+AGG | 0.450927 | 8.4:-72567240 | MS.gene25109:intron |
| TGCTTACACTTCTTCCCTCA+GGG | 0.455039 | 8.4:+72567775 | None:intergenic |
| AAAAGCTCACCCAAACTGTA+AGG | 0.456426 | 8.4:-72568485 | MS.gene25109:CDS |
| AGTACTAGAGGAGAGTTTGA+GGG | 0.460626 | 8.4:-72567826 | MS.gene25109:CDS |
| TTCAATACTGAGCTAGAAGA+TGG | 0.461459 | 8.4:+72567651 | None:intergenic |
| TCTTCAAGCCATTGTTTGAC+AGG | 0.463739 | 8.4:+72568157 | None:intergenic |
| TACTCTATTTGCGGTTACCT+TGG | 0.466980 | 8.4:+72568228 | None:intergenic |
| CGCCATTTCAGCTCCGTCGC+CGG | 0.470645 | 8.4:+72573463 | None:intergenic |
| ATATGATCTCCTGCAGAAAG+AGG | 0.478732 | 8.4:-72567412 | MS.gene25109:CDS |
| TGCCTTGGTTAAGGCCTCCA+TGG | 0.478833 | 8.4:-72568709 | MS.gene25109:CDS |
| CTACGGTGGTTGCAAATGAA+TGG | 0.479682 | 8.4:-72568204 | MS.gene25109:CDS |
| AGCAATTCTTGCTCCTTTGG+AGG | 0.480043 | 8.4:-72568970 | MS.gene25109:CDS |
| TGATGGCAAGCTAAAATTAA+CGG | 0.487466 | 8.4:-72569221 | MS.gene25109:CDS |
| CCGGGAACTGAAAGCGGCGC+CGG | 0.487898 | 8.4:+72573437 | None:intergenic |
| TTCGTTGTGTAGATAAGGAT+AGG | 0.490508 | 8.4:-72573190 | MS.gene25109:intron |
| CGATTAAGCTCAACCTTCAC+TGG | 0.491809 | 8.4:+72573317 | None:intergenic |
| GTCATGACCTTGAGGAAAGC+TGG | 0.495312 | 8.4:-72567390 | MS.gene25109:CDS |
| AGGAATAAAATGCAGCTGAA+TGG | 0.499339 | 8.4:-72567576 | MS.gene25109:CDS |
| CTATCCTCTGTATCCACTGT+TGG | 0.500010 | 8.4:+72567450 | None:intergenic |
| ATGGCGGATGTTTCCGGCGA+CGG | 0.500646 | 8.4:-72573476 | MS.gene25109:CDS |
| GAAACAGATGTTAATTGGAA+AGG | 0.502395 | 8.4:-72567501 | MS.gene25109:CDS |
| AAAGACTGTTCAGGTTGCCT+TGG | 0.505372 | 8.4:-72568724 | MS.gene25109:CDS |
| AGATAAAGACGATGCTATTG+AGG | 0.506040 | 8.4:-72567343 | MS.gene25109:intron |
| GATTCTGAGCACTGTTTACA+GGG | 0.509732 | 8.4:+72567072 | None:intergenic |
| AGGTCATGACCTCTTTCTGC+AGG | 0.510001 | 8.4:+72567403 | None:intergenic |
| TCGTTGTGTAGATAAGGATA+GGG | 0.511211 | 8.4:-72573189 | MS.gene25109:intron |
| GAGCACTGTTTACAGGGCCA+GGG | 0.513679 | 8.4:+72567078 | None:intergenic |
| TCGAGGCAAAGAAGATGAGA+AGG | 0.517293 | 8.4:-72567190 | MS.gene25109:CDS |
| TGAAAGGATGGTAACCGCTT+AGG | 0.519905 | 8.4:+72567687 | None:intergenic |
| GATGAACTGTCAAAGGTTGA+TGG | 0.521132 | 8.4:-72569238 | MS.gene25109:CDS |
| AATTCTCGTCGGCAATCTCT+AGG | 0.523539 | 8.4:-72567753 | MS.gene25109:CDS |
| GATGACCTTAATTGAAAGGA+TGG | 0.525501 | 8.4:+72567675 | None:intergenic |
| TATTTGCGGTTACCTTGGCA+CGG | 0.525808 | 8.4:+72568233 | None:intergenic |
| AAGCGGTTCAGCAATATAAA+GGG | 0.526321 | 8.4:-72567101 | MS.gene25109:CDS |
| GGAAGTAGCCAACATGGAAA+AGG | 0.530015 | 8.4:-72567168 | MS.gene25109:CDS |
| GTACTAGAGGAGAGTTTGAG+GGG | 0.532343 | 8.4:-72567825 | MS.gene25109:CDS |
| TATCCTCTGTATCCACTGTT+GGG | 0.534369 | 8.4:+72567451 | None:intergenic |
| TTCAGCAATATAAAGGGCCC+TGG | 0.538699 | 8.4:-72567095 | MS.gene25109:CDS |
| CTGCTGAAGCTACTCTTCGA+AGG | 0.540526 | 8.4:-72569034 | MS.gene25109:CDS |
| GAAACAGATTGAGATTTGCC+AGG | 0.542161 | 8.4:-72568652 | MS.gene25109:intron |
| AAGGGTACATGCTGCTCAGA+AGG | 0.547693 | 8.4:-72569015 | MS.gene25109:CDS |
| ATCAACCTTTGACAGTTCAT+CGG | 0.548852 | 8.4:+72569240 | None:intergenic |
| TCAATACTGAGCTAGAAGAT+GGG | 0.554005 | 8.4:+72567652 | None:intergenic |
| AACTCGTCAGCATCCATACT+CGG | 0.554301 | 8.4:+72573365 | None:intergenic |
| AGCAAGAATTGCTTCTATTG+GGG | 0.554309 | 8.4:+72568980 | None:intergenic |
| CTCATTACCAGCTTTCCTCA+AGG | 0.556470 | 8.4:+72567383 | None:intergenic |
| TCAAAAGATTACCTCTTCAA+CGG | 0.560647 | 8.4:+72573103 | None:intergenic |
| TGGGGATGACCTTAATTGAA+AGG | 0.562293 | 8.4:+72567671 | None:intergenic |
| GCATAGACTAAAGGTGGCAG+AGG | 0.565614 | 8.4:-72568511 | MS.gene25109:CDS |
| GAAGAGGCTGTCCTTGCAGG+TGG | 0.569785 | 8.4:-72568456 | MS.gene25109:CDS |
| GTTAACCGATGAACTGTCAA+AGG | 0.570201 | 8.4:-72569245 | MS.gene25109:CDS |
| CTTCTTTGGATTTGGTAAGA+CGG | 0.571194 | 8.4:+72568766 | None:intergenic |
| ATTTGCGGTTACCTTGGCAC+GGG | 0.572229 | 8.4:+72568234 | None:intergenic |
| CTCGGAGACGCGGCTCCGCG+AGG | 0.572362 | 8.4:-72573391 | MS.gene25109:CDS |
| AACCGCAAATAGAGTAGCTA+CGG | 0.574969 | 8.4:-72568221 | MS.gene25109:CDS |
| GGACAGAATGCATAGACTAA+AGG | 0.576267 | 8.4:-72568520 | MS.gene25109:CDS |
| GCACGGTTCGGATCCAGTGA+AGG | 0.577059 | 8.4:-72573330 | MS.gene25109:CDS |
| TTGCAGCAGCACCACCTGCA+AGG | 0.579728 | 8.4:+72568445 | None:intergenic |
| TACTAGAGGAGAGTTTGAGG+GGG | 0.580757 | 8.4:-72567824 | MS.gene25109:CDS |
| AGATACATTAACCAAAGCCA+TGG | 0.582171 | 8.4:-72567216 | MS.gene25109:CDS |
| TCGGGAGTTGGCCCGTGCCA+AGG | 0.582971 | 8.4:-72568245 | MS.gene25109:CDS |
| AACGATCCGGGAACTGAAAG+CGG | 0.583534 | 8.4:+72573431 | None:intergenic |
| CGGCTTGAGAATGAAGTTCG+AGG | 0.589218 | 8.4:-72573296 | MS.gene25109:intron |
| GGGGCACAAGGTCACTGGAG+AGG | 0.592071 | 8.4:-72567596 | MS.gene25109:CDS |
| TGATGAAAAGAAAGCAGCAA+TGG | 0.592211 | 8.4:-72569069 | MS.gene25109:CDS |
| AACTGTAAGGGAGCTAGAAG+AGG | 0.592925 | 8.4:-72568472 | MS.gene25109:CDS |
| CGAGGCAAAGAAGATGAGAA+GGG | 0.598005 | 8.4:-72567189 | MS.gene25109:CDS |
| AGTAGTCGCAGCACCCCTGA+GGG | 0.599314 | 8.4:-72567789 | MS.gene25109:CDS |
| AACCAAAGCCATGGAAGTCG+AGG | 0.599943 | 8.4:-72567207 | MS.gene25109:CDS |
| GAGAAGGGAAGTAGCCAACA+TGG | 0.599967 | 8.4:-72567174 | MS.gene25109:CDS |
| ACTAAAACTTGCTCGACAAG+AGG | 0.602494 | 8.4:-72568943 | MS.gene25109:intron |
| GTCGCCGGAAACATCCGCCA+TGG | 0.605558 | 8.4:+72573478 | None:intergenic |
| CAATACTGAGCTAGAAGATG+GGG | 0.606926 | 8.4:+72567653 | None:intergenic |
| TGCTGAAGCTACTCTTCGAA+GGG | 0.610610 | 8.4:-72569033 | MS.gene25109:CDS |
| CACAGAAGTGTGACACGTGG+AGG | 0.611200 | 8.4:-72566294 | MS.gene25109:intron |
| CAGAATGCATAGACTAAAGG+TGG | 0.613852 | 8.4:-72568517 | MS.gene25109:CDS |
| GCTTACACTTCTTCCCTCAG+GGG | 0.618533 | 8.4:+72567776 | None:intergenic |
| GGCAAATGACTTCCCAACAG+TGG | 0.619817 | 8.4:-72567463 | MS.gene25109:CDS |
| AAGTGATGCCTGTCAAACAA+TGG | 0.623263 | 8.4:-72568165 | MS.gene25109:CDS |
| AAAGCTCACCCAAACTGTAA+GGG | 0.623664 | 8.4:-72568484 | MS.gene25109:CDS |
| TCTTACCAAATCCAAAGAAG+CGG | 0.624399 | 8.4:-72568763 | MS.gene25109:CDS |
| AGAATCAGCTAATTTCTGGA+AGG | 0.627344 | 8.4:-72567055 | MS.gene25109:intron |
| AGGAGATCATATAAAATACC+TGG | 0.629626 | 8.4:+72567423 | None:intergenic |
| CAGTAGTCGCAGCACCCCTG+AGG | 0.630358 | 8.4:-72567790 | MS.gene25109:CDS |
| GAAGTGTAAGCAATTCTCGT+CGG | 0.633903 | 8.4:-72567764 | MS.gene25109:CDS |
| ATTACGGCTTAAAGTACTAG+AGG | 0.638308 | 8.4:-72567838 | MS.gene25109:CDS |
| TCAGTATTGAAGAATGCCAA+AGG | 0.641224 | 8.4:-72567639 | MS.gene25109:CDS |
| GCAAGAATTGCTTCTATTGG+GGG | 0.641990 | 8.4:+72568981 | None:intergenic |
| GAGTTCATGAATCTGTTGCA+CGG | 0.643279 | 8.4:-72573347 | MS.gene25109:CDS |
| AGAAAGAGGTCATGACCTTG+AGG | 0.644090 | 8.4:-72567398 | MS.gene25109:CDS |
| GGAGGTAGCTGCTATGCGTG+TGG | 0.645115 | 8.4:-72567147 | MS.gene25109:CDS |
| AGTAGCCAACATGGAAAAGG+AGG | 0.647046 | 8.4:-72567165 | MS.gene25109:CDS |
| CGCAAATAGAGTAGCTACGG+TGG | 0.650139 | 8.4:-72568218 | MS.gene25109:CDS |
| CACCATGGAGGCCTTAACCA+AGG | 0.650505 | 8.4:+72568707 | None:intergenic |
| TGGTTAAACGAATAACTTTG+GGG | 0.651422 | 8.4:+72567549 | None:intergenic |
| AGCTCTTCTTCTCGGAGACG+CGG | 0.654689 | 8.4:-72573401 | MS.gene25109:CDS |
| ATCCATACTCGGTTGCCTCG+CGG | 0.672191 | 8.4:+72573376 | None:intergenic |
| ATGCAGTTAGAGATTATCAG+AGG | 0.672316 | 8.4:-72568422 | MS.gene25109:CDS |
| CTTGGTTAAGGCCTCCATGG+TGG | 0.672391 | 8.4:-72568706 | MS.gene25109:CDS |
| TCTCGTCGGCAATCTCTAGG+TGG | 0.679714 | 8.4:-72567750 | MS.gene25109:CDS |
| CTTCCCAACAGTGGATACAG+AGG | 0.682920 | 8.4:-72567454 | MS.gene25109:CDS |
| TTGGAGATCATCCACCATGG+AGG | 0.683506 | 8.4:+72568695 | None:intergenic |
| TTCCACAGAAGTGTGACACG+TGG | 0.691881 | 8.4:-72566297 | MS.gene25109:intron |
| AACAAGAGAACAGAGCAAAG+CGG | 0.697116 | 8.4:-72567118 | MS.gene25109:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 72566272 | 72573498 | 72566272 | ID=MS.gene25109 |
| chr8.4 | mRNA | 72566272 | 72573498 | 72566272 | ID=MS.gene25109.t1;Parent=MS.gene25109 |
| chr8.4 | exon | 72573297 | 72573498 | 72573297 | ID=MS.gene25109.t1.exon1;Parent=MS.gene25109.t1 |
| chr8.4 | CDS | 72573297 | 72573498 | 72573297 | ID=cds.MS.gene25109.t1;Parent=MS.gene25109.t1 |
| chr8.4 | exon | 72573115 | 72573200 | 72573115 | ID=MS.gene25109.t1.exon2;Parent=MS.gene25109.t1 |
| chr8.4 | CDS | 72573115 | 72573200 | 72573115 | ID=cds.MS.gene25109.t1;Parent=MS.gene25109.t1 |
| chr8.4 | exon | 72569201 | 72569266 | 72569201 | ID=MS.gene25109.t1.exon3;Parent=MS.gene25109.t1 |
| chr8.4 | CDS | 72569201 | 72569266 | 72569201 | ID=cds.MS.gene25109.t1;Parent=MS.gene25109.t1 |
| chr8.4 | exon | 72568944 | 72569114 | 72568944 | ID=MS.gene25109.t1.exon4;Parent=MS.gene25109.t1 |
| chr8.4 | CDS | 72568944 | 72569114 | 72568944 | ID=cds.MS.gene25109.t1;Parent=MS.gene25109.t1 |
| chr8.4 | exon | 72568653 | 72568823 | 72568653 | ID=MS.gene25109.t1.exon5;Parent=MS.gene25109.t1 |
| chr8.4 | CDS | 72568653 | 72568823 | 72568653 | ID=cds.MS.gene25109.t1;Parent=MS.gene25109.t1 |
| chr8.4 | exon | 72568404 | 72568559 | 72568404 | ID=MS.gene25109.t1.exon6;Parent=MS.gene25109.t1 |
| chr8.4 | CDS | 72568404 | 72568559 | 72568404 | ID=cds.MS.gene25109.t1;Parent=MS.gene25109.t1 |
| chr8.4 | exon | 72568141 | 72568287 | 72568141 | ID=MS.gene25109.t1.exon7;Parent=MS.gene25109.t1 |
| chr8.4 | CDS | 72568141 | 72568287 | 72568141 | ID=cds.MS.gene25109.t1;Parent=MS.gene25109.t1 |
| chr8.4 | exon | 72567951 | 72568022 | 72567951 | ID=MS.gene25109.t1.exon8;Parent=MS.gene25109.t1 |
| chr8.4 | CDS | 72567951 | 72568022 | 72567951 | ID=cds.MS.gene25109.t1;Parent=MS.gene25109.t1 |
| chr8.4 | exon | 72567344 | 72567871 | 72567344 | ID=MS.gene25109.t1.exon9;Parent=MS.gene25109.t1 |
| chr8.4 | CDS | 72567344 | 72567871 | 72567344 | ID=cds.MS.gene25109.t1;Parent=MS.gene25109.t1 |
| chr8.4 | exon | 72567056 | 72567255 | 72567056 | ID=MS.gene25109.t1.exon10;Parent=MS.gene25109.t1 |
| chr8.4 | CDS | 72567056 | 72567255 | 72567056 | ID=cds.MS.gene25109.t1;Parent=MS.gene25109.t1 |
| chr8.4 | exon | 72566272 | 72566311 | 72566272 | ID=MS.gene25109.t1.exon11;Parent=MS.gene25109.t1 |
| chr8.4 | CDS | 72566272 | 72566311 | 72566272 | ID=cds.MS.gene25109.t1;Parent=MS.gene25109.t1 |
| Gene Sequence |
| Protein sequence |
